Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05233.t1 | XP_003620187.1 | 94.8 | 213 | 9 | 1 | 1 | 213 | 1 | 211 | 9.60E-114 | 419.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05233.t1 | P13087 | 40.4 | 213 | 104 | 7 | 11 | 213 | 17 | 216 | 1.4e-33 | 144.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05233.t1 | G7KKQ9 | 94.8 | 213 | 9 | 1 | 1 | 213 | 1 | 211 | 6.9e-114 | 419.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052011 | MS.gene05233 | 0.804959 | 1.68E-49 | -1.69E-46 |
| MS.gene052223 | MS.gene05233 | 0.81723 | 3.67E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene053406 | 0.803593 | 3.24E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene054183 | -0.801238 | 9.89E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene055601 | 0.848907 | 4.54E-60 | -1.69E-46 |
| MS.gene05233 | MS.gene056330 | 0.814526 | 1.47E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene056690 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene056899 | 0.848026 | 7.97E-60 | -1.69E-46 |
| MS.gene05233 | MS.gene05984 | -0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene061049 | -0.817443 | 3.29E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene061679 | -0.801205 | 1.01E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene061836 | 0.816914 | 4.32E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene061837 | 0.828977 | 6.66E-55 | -1.69E-46 |
| MS.gene05233 | MS.gene061838 | 0.826734 | 2.31E-54 | -1.69E-46 |
| MS.gene05233 | MS.gene062491 | 0.852785 | 3.68E-61 | -1.69E-46 |
| MS.gene05233 | MS.gene066937 | 0.83481 | 2.42E-56 | -1.69E-46 |
| MS.gene05233 | MS.gene069431 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene069486 | 0.833536 | 5.04E-56 | -1.69E-46 |
| MS.gene05233 | MS.gene069487 | 0.907958 | 2.88E-81 | -1.69E-46 |
| MS.gene05233 | MS.gene070491 | -0.815986 | 6.98E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene071546 | -0.801385 | 9.23E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene073286 | 0.83842 | 2.91E-57 | -1.69E-46 |
| MS.gene05233 | MS.gene07862 | -0.803344 | 3.65E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene08665 | -0.801144 | 1.03E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene08666 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene09768 | 0.811508 | 6.76E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene09895 | 0.807208 | 5.66E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene20315 | -0.802583 | 5.24E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene20556 | -0.835165 | 1.97E-56 | -1.69E-46 |
| MS.gene05233 | MS.gene25652 | 0.824101 | 9.69E-54 | -1.69E-46 |
| MS.gene05233 | MS.gene26705 | 0.805619 | 1.22E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene28160 | -0.801191 | 1.01E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene30518 | 0.834046 | 3.76E-56 | -1.69E-46 |
| MS.gene05233 | MS.gene30519 | 0.860741 | 1.67E-63 | -1.69E-46 |
| MS.gene05233 | MS.gene30520 | 0.854724 | 1.02E-61 | -1.69E-46 |
| MS.gene05233 | MS.gene30666 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene31671 | -0.81144 | 7.00E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene33198 | -0.819473 | 1.14E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene35460 | 0.803107 | 4.08E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene37742 | 0.960581 | 1.02E-118 | -1.69E-46 |
| MS.gene05233 | MS.gene37910 | -0.810172 | 1.32E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene42017 | 0.801715 | 7.90E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene42018 | 0.804053 | 2.60E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene42096 | 0.809556 | 1.79E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene43874 | 0.81537 | 9.57E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene45695 | 0.802068 | 6.68E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene46272 | 0.839447 | 1.58E-57 | -1.69E-46 |
| MS.gene05233 | MS.gene46312 | -0.819205 | 1.31E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene48184 | 0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene50787 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene51067 | -0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene52248 | 0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene52369 | 0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene52371 | 0.806017 | 1.01E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene54611 | 0.834481 | 2.92E-56 | -1.69E-46 |
| MS.gene05233 | MS.gene56009 | 0.800058 | 1.72E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene56177 | -0.812809 | 3.52E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene57813 | 0.92821 | 3.98E-92 | -1.69E-46 |
| MS.gene05233 | MS.gene57944 | 0.808207 | 3.47E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene58160 | -0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene58162 | -0.817847 | 2.67E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene58740 | 0.800371 | 1.49E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene60286 | -0.807864 | 4.10E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene61701 | -0.802804 | 4.71E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene62885 | 0.84774 | 9.55E-60 | -1.69E-46 |
| MS.gene05233 | MS.gene62886 | 0.847636 | 1.02E-59 | -1.69E-46 |
| MS.gene05233 | MS.gene70064 | 0.81156 | 6.58E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene70304 | -0.803165 | 3.97E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene70315 | -0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene71395 | 0.800522 | 1.39E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene71924 | 0.821725 | 3.47E-53 | -1.69E-46 |
| MS.gene05233 | MS.gene71927 | 0.844888 | 5.72E-59 | -1.69E-46 |
| MS.gene05233 | MS.gene72466 | -0.802673 | 5.02E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene72924 | 0.84295 | 1.89E-58 | -1.69E-46 |
| MS.gene05233 | MS.gene74030 | 0.83844 | 2.87E-57 | -1.69E-46 |
| MS.gene05233 | MS.gene74031 | 0.841979 | 3.42E-58 | -1.69E-46 |
| MS.gene05233 | MS.gene74032 | 0.852652 | 4.01E-61 | -1.69E-46 |
| MS.gene05233 | MS.gene75460 | 0.815249 | 1.02E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene76737 | 0.806108 | 9.65E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene79232 | 0.819601 | 1.07E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene82533 | -0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene82939 | -0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene83008 | 0.81316 | 2.95E-51 | -1.69E-46 |
| MS.gene05233 | MS.gene84373 | 0.819674 | 1.03E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene85276 | 0.808959 | 2.40E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene87043 | 0.824832 | 6.52E-54 | -1.69E-46 |
| MS.gene05233 | MS.gene88768 | -0.800301 | 1.54E-48 | -1.69E-46 |
| MS.gene05233 | MS.gene89773 | 0.816332 | 5.84E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene91221 | 0.80697 | 6.35E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene91509 | -0.815996 | 6.94E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene91581 | -0.80465 | 1.95E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene92773 | -0.80302 | 4.25E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene96371 | -0.80559 | 1.24E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene97335 | 0.803165 | 3.97E-49 | -1.69E-46 |
| MS.gene05233 | MS.gene97788 | 0.809163 | 2.17E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene99544 | 0.840471 | 8.53E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05233.t1 | MTR_6g078280 | 94.836 | 213 | 9 | 1 | 1 | 213 | 1 | 211 | 1.23e-141 | 394 |
| MS.gene05233.t1 | MTR_6g078260 | 67.742 | 217 | 47 | 7 | 1 | 213 | 1 | 198 | 1.59e-93 | 272 |
| MS.gene05233.t1 | MTR_6g078140 | 58.911 | 202 | 75 | 4 | 15 | 213 | 16 | 212 | 5.20e-73 | 220 |
| MS.gene05233.t1 | MTR_6g078120 | 58.416 | 202 | 76 | 4 | 15 | 213 | 16 | 212 | 3.08e-72 | 218 |
| MS.gene05233.t1 | MTR_6g078290 | 51.852 | 216 | 94 | 5 | 1 | 212 | 1 | 210 | 3.99e-67 | 205 |
| MS.gene05233.t1 | MTR_6g078250 | 52.074 | 217 | 88 | 6 | 1 | 214 | 1 | 204 | 1.84e-62 | 193 |
| MS.gene05233.t1 | MTR_7g037410 | 43.979 | 191 | 90 | 6 | 26 | 213 | 25 | 201 | 1.59e-48 | 158 |
| MS.gene05233.t1 | MTR_6g078100 | 37.788 | 217 | 118 | 8 | 1 | 213 | 1 | 204 | 7.69e-35 | 123 |
| MS.gene05233.t1 | MTR_6g078070 | 35.747 | 221 | 115 | 10 | 1 | 213 | 1 | 202 | 1.96e-30 | 111 |
| MS.gene05233.t1 | MTR_6g065460 | 29.767 | 215 | 133 | 7 | 1 | 211 | 1 | 201 | 8.28e-16 | 73.2 |
| MS.gene05233.t1 | MTR_6g009563 | 29.756 | 205 | 119 | 7 | 6 | 205 | 9 | 193 | 2.34e-12 | 63.9 |
| MS.gene05233.t1 | MTR_3g106620 | 29.515 | 227 | 114 | 13 | 6 | 214 | 1 | 199 | 1.15e-11 | 62.0 |
| MS.gene05233.t1 | MTR_6g009650 | 29.952 | 207 | 118 | 7 | 4 | 205 | 8 | 192 | 1.29e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05233.t1 | AT1G17860 | 36.239 | 218 | 110 | 9 | 1 | 213 | 1 | 194 | 1.41e-36 | 127 |
| MS.gene05233.t1 | AT1G73325 | 33.480 | 227 | 112 | 12 | 1 | 213 | 1 | 202 | 9.20e-22 | 89.4 |
| MS.gene05233.t1 | AT1G73260 | 30.047 | 213 | 124 | 10 | 8 | 214 | 12 | 205 | 6.73e-18 | 79.0 |
| MS.gene05233.t1 | AT1G73330 | 29.596 | 223 | 117 | 13 | 1 | 214 | 1 | 192 | 2.54e-13 | 66.6 |
Find 57 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGAAACTTAACTTTAA+AGG | 0.154767 | 6.2:-77792066 | None:intergenic |
| CATCTTCATACTTCTCAATT+TGG | 0.163418 | 6.2:-77791923 | None:intergenic |
| AATGTTTCTTCTTTAGAAAA+AGG | 0.285974 | 6.2:-77791843 | None:intergenic |
| TTCTGAAACTTAACTTTAAA+GGG | 0.298093 | 6.2:-77792065 | None:intergenic |
| AGCCGGAATGATGTAGTAAT+TGG | 0.358723 | 6.2:-77791574 | None:intergenic |
| AACCATGTATGCAAAGATAT+TGG | 0.371437 | 6.2:+77791993 | MS.gene05233:CDS |
| AACGCCTTTCTTGTTGTTAA+CGG | 0.386453 | 6.2:-77791730 | None:intergenic |
| TTGTTAGTTGTTTCAATAGT+GGG | 0.387109 | 6.2:+77791619 | MS.gene05233:CDS |
| GTGACTACTAATGGTGTATT+GGG | 0.404413 | 6.2:+77791867 | MS.gene05233:CDS |
| ACGCCTTTCTTGTTGTTAAC+GGG | 0.404872 | 6.2:-77791729 | None:intergenic |
| TTCCAATATCTTTGCATACA+TGG | 0.418385 | 6.2:-77791995 | None:intergenic |
| GAAACATTTGTGACTACTAA+TGG | 0.419288 | 6.2:+77791858 | MS.gene05233:CDS |
| TTTGTTAGTTGTTTCAATAG+TGG | 0.428561 | 6.2:+77791618 | MS.gene05233:CDS |
| TGTGACTACTAATGGTGTAT+TGG | 0.442930 | 6.2:+77791866 | MS.gene05233:CDS |
| TACCAATTACTACATCATTC+CGG | 0.457107 | 6.2:+77791572 | MS.gene05233:CDS |
| TAAGACTAGGGAAATGCGTT+TGG | 0.471251 | 6.2:+77792028 | MS.gene05233:CDS |
| CTTAACTTTAAAGGGAACAT+TGG | 0.476364 | 6.2:-77792057 | None:intergenic |
| GTTCAAATACAATCCACAAT+TGG | 0.476445 | 6.2:+77791898 | MS.gene05233:CDS |
| TCTCAATTTGGAACCAATTG+TGG | 0.486271 | 6.2:-77791911 | None:intergenic |
| ACATGGTTGCAAGTAGGCCT+AGG | 0.486695 | 6.2:-77791978 | None:intergenic |
| TTGTCCTCACAACCACTACT+TGG | 0.492527 | 6.2:+77791489 | MS.gene05233:CDS |
| CGATGTGTCAATGACTTGAT+CGG | 0.502159 | 6.2:-77791529 | None:intergenic |
| GTAGGCCTAGGGCACACATT+AGG | 0.504846 | 6.2:-77791966 | None:intergenic |
| GAACTTTATGTTGAGATCAG+TGG | 0.505826 | 6.2:-77791763 | None:intergenic |
| ATTGTCCTAATGTGTGCCCT+AGG | 0.513630 | 6.2:+77791961 | MS.gene05233:CDS |
| GAATTTATGTGTATAAGACT+AGG | 0.515322 | 6.2:+77792015 | MS.gene05233:CDS |
| TGTTAGTTGTTTCAATAGTG+GGG | 0.526839 | 6.2:+77791620 | MS.gene05233:CDS |
| GTAGTTGTGAAACATAATCA+AGG | 0.526996 | 6.2:+77791687 | MS.gene05233:CDS |
| AATTTATGTGTATAAGACTA+GGG | 0.531831 | 6.2:+77792016 | MS.gene05233:CDS |
| AGGATCAATCTTCCACACTA+AGG | 0.534325 | 6.2:-77791823 | None:intergenic |
| GTTAGTTGTTTCAATAGTGG+GGG | 0.535688 | 6.2:+77791621 | MS.gene05233:CDS |
| TTGTGGATTGTATTTGAACC+CGG | 0.536118 | 6.2:-77791894 | None:intergenic |
| GTATGAAGATGCTTATAAGT+TGG | 0.537055 | 6.2:+77791935 | MS.gene05233:CDS |
| ATAATCAAGGTTTACCGTTG+AGG | 0.542322 | 6.2:+77791700 | MS.gene05233:CDS |
| TTCCACACTAAGGAATGGTT+AGG | 0.542536 | 6.2:-77791813 | None:intergenic |
| GATGTGTCAATGACTTGATC+GGG | 0.551157 | 6.2:-77791528 | None:intergenic |
| TAATGGTGTATTGGGAAACC+CGG | 0.551726 | 6.2:+77791875 | MS.gene05233:CDS |
| CTTTAAAGTTAAGTTTCAGA+AGG | 0.553919 | 6.2:+77792067 | MS.gene05233:CDS |
| TTGCATACATGGTTGCAAGT+AGG | 0.561986 | 6.2:-77791984 | None:intergenic |
| GTCCTAACCATTCCTTAGTG+TGG | 0.567409 | 6.2:+77791811 | MS.gene05233:CDS |
| GGCATTGCTCTTGAATCCGT+CGG | 0.567668 | 6.2:+77791642 | MS.gene05233:CDS |
| ACACCCGTTAACAACAAGAA+AGG | 0.576147 | 6.2:+77791726 | MS.gene05233:CDS |
| GATCAAGTCATTGACACATC+GGG | 0.588958 | 6.2:+77791531 | MS.gene05233:CDS |
| TTCACAACTACTACATCAAG+AGG | 0.592646 | 6.2:-77791675 | None:intergenic |
| CAATCTTCCACACTAAGGAA+TGG | 0.596624 | 6.2:-77791818 | None:intergenic |
| GTGAGGACAATGCAAAGAGA+AGG | 0.598876 | 6.2:-77791476 | None:intergenic |
| TGTGGATTGTATTTGAACCC+GGG | 0.605984 | 6.2:-77791893 | None:intergenic |
| GCTACGTCATTTACAACATG+TGG | 0.606180 | 6.2:+77791594 | MS.gene05233:CDS |
| CATGGTTGCAAGTAGGCCTA+GGG | 0.612576 | 6.2:-77791977 | None:intergenic |
| CATGTTGTAAATGACGTAGC+CGG | 0.612691 | 6.2:-77791591 | None:intergenic |
| CGATCAAGTCATTGACACAT+CGG | 0.616565 | 6.2:+77791530 | MS.gene05233:CDS |
| TTAACGGGTGTGAACCTCAA+CGG | 0.621698 | 6.2:-77791714 | None:intergenic |
| TGATCCAAGTAGTGGTTGTG+AGG | 0.632530 | 6.2:-77791493 | None:intergenic |
| GCTTCAGCTGATCCAAGTAG+TGG | 0.646579 | 6.2:-77791501 | None:intergenic |
| AATGGTGTATTGGGAAACCC+GGG | 0.666072 | 6.2:+77791876 | MS.gene05233:CDS |
| AAGAGGGCAAGATTCGCCGA+CGG | 0.698733 | 6.2:-77791658 | None:intergenic |
| TCACAACTACTACATCAAGA+GGG | 0.703659 | 6.2:-77791674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGTGTATAAGACTA+GGG | + | chr6.2:77792016-77792035 | MS.gene05233:CDS | 20.0% |
| !!! | AATGTTTCTTCTTTAGAAAA+AGG | - | chr6.2:77791846-77791865 | None:intergenic | 20.0% |
| !!! | TTCTGAAACTTAACTTTAAA+GGG | - | chr6.2:77792068-77792087 | None:intergenic | 20.0% |
| ! | GAATTTATGTGTATAAGACT+AGG | + | chr6.2:77792015-77792034 | MS.gene05233:CDS | 25.0% |
| !! | TTGTTAGTTGTTTCAATAGT+GGG | + | chr6.2:77791619-77791638 | MS.gene05233:CDS | 25.0% |
| !! | TTTGTTAGTTGTTTCAATAG+TGG | + | chr6.2:77791618-77791637 | MS.gene05233:CDS | 25.0% |
| !!! | CTTCTGAAACTTAACTTTAA+AGG | - | chr6.2:77792069-77792088 | None:intergenic | 25.0% |
| !!! | CTTTAAAGTTAAGTTTCAGA+AGG | + | chr6.2:77792067-77792086 | MS.gene05233:CDS | 25.0% |
| AACCATGTATGCAAAGATAT+TGG | + | chr6.2:77791993-77792012 | MS.gene05233:CDS | 30.0% | |
| CATCTTCATACTTCTCAATT+TGG | - | chr6.2:77791926-77791945 | None:intergenic | 30.0% | |
| GAAACATTTGTGACTACTAA+TGG | + | chr6.2:77791858-77791877 | MS.gene05233:CDS | 30.0% | |
| GTAGTTGTGAAACATAATCA+AGG | + | chr6.2:77791687-77791706 | MS.gene05233:CDS | 30.0% | |
| GTATGAAGATGCTTATAAGT+TGG | + | chr6.2:77791935-77791954 | MS.gene05233:CDS | 30.0% | |
| GTTCAAATACAATCCACAAT+TGG | + | chr6.2:77791898-77791917 | MS.gene05233:CDS | 30.0% | |
| TACCAATTACTACATCATTC+CGG | + | chr6.2:77791572-77791591 | MS.gene05233:CDS | 30.0% | |
| TTCCAATATCTTTGCATACA+TGG | - | chr6.2:77791998-77792017 | None:intergenic | 30.0% | |
| ! | CTTAACTTTAAAGGGAACAT+TGG | - | chr6.2:77792060-77792079 | None:intergenic | 30.0% |
| ! | TGTTAGTTGTTTCAATAGTG+GGG | + | chr6.2:77791620-77791639 | MS.gene05233:CDS | 30.0% |
| ATAATCAAGGTTTACCGTTG+AGG | + | chr6.2:77791700-77791719 | MS.gene05233:CDS | 35.0% | |
| GAACTTTATGTTGAGATCAG+TGG | - | chr6.2:77791766-77791785 | None:intergenic | 35.0% | |
| GTGACTACTAATGGTGTATT+GGG | + | chr6.2:77791867-77791886 | MS.gene05233:CDS | 35.0% | |
| TCACAACTACTACATCAAGA+GGG | - | chr6.2:77791677-77791696 | None:intergenic | 35.0% | |
| TGTGACTACTAATGGTGTAT+TGG | + | chr6.2:77791866-77791885 | MS.gene05233:CDS | 35.0% | |
| TTCACAACTACTACATCAAG+AGG | - | chr6.2:77791678-77791697 | None:intergenic | 35.0% | |
| ! | GTTAGTTGTTTCAATAGTGG+GGG | + | chr6.2:77791621-77791640 | MS.gene05233:CDS | 35.0% |
| ! | TCTCAATTTGGAACCAATTG+TGG | - | chr6.2:77791914-77791933 | None:intergenic | 35.0% |
| ! | TTGTGGATTGTATTTGAACC+CGG | - | chr6.2:77791897-77791916 | None:intergenic | 35.0% |
| !! | AACGCCTTTCTTGTTGTTAA+CGG | - | chr6.2:77791733-77791752 | None:intergenic | 35.0% |
| ACACCCGTTAACAACAAGAA+AGG | + | chr6.2:77791726-77791745 | MS.gene05233:CDS | 40.0% | |
| AGCCGGAATGATGTAGTAAT+TGG | - | chr6.2:77791577-77791596 | None:intergenic | 40.0% | |
| AGGATCAATCTTCCACACTA+AGG | - | chr6.2:77791826-77791845 | None:intergenic | 40.0% | |
| CAATCTTCCACACTAAGGAA+TGG | - | chr6.2:77791821-77791840 | None:intergenic | 40.0% | |
| CATGTTGTAAATGACGTAGC+CGG | - | chr6.2:77791594-77791613 | None:intergenic | 40.0% | |
| CGATCAAGTCATTGACACAT+CGG | + | chr6.2:77791530-77791549 | MS.gene05233:CDS | 40.0% | |
| CGATGTGTCAATGACTTGAT+CGG | - | chr6.2:77791532-77791551 | None:intergenic | 40.0% | |
| GATCAAGTCATTGACACATC+GGG | + | chr6.2:77791531-77791550 | MS.gene05233:CDS | 40.0% | |
| GATGTGTCAATGACTTGATC+GGG | - | chr6.2:77791531-77791550 | None:intergenic | 40.0% | |
| GCTACGTCATTTACAACATG+TGG | + | chr6.2:77791594-77791613 | MS.gene05233:CDS | 40.0% | |
| TAAGACTAGGGAAATGCGTT+TGG | + | chr6.2:77792028-77792047 | MS.gene05233:CDS | 40.0% | |
| TAATGGTGTATTGGGAAACC+CGG | + | chr6.2:77791875-77791894 | MS.gene05233:CDS | 40.0% | |
| TTCCACACTAAGGAATGGTT+AGG | - | chr6.2:77791816-77791835 | None:intergenic | 40.0% | |
| TTGCATACATGGTTGCAAGT+AGG | - | chr6.2:77791987-77792006 | None:intergenic | 40.0% | |
| ! | TGTGGATTGTATTTGAACCC+GGG | - | chr6.2:77791896-77791915 | None:intergenic | 40.0% |
| !! | ACGCCTTTCTTGTTGTTAAC+GGG | - | chr6.2:77791732-77791751 | None:intergenic | 40.0% |
| AATGGTGTATTGGGAAACCC+GGG | + | chr6.2:77791876-77791895 | MS.gene05233:CDS | 45.0% | |
| ATTGTCCTAATGTGTGCCCT+AGG | + | chr6.2:77791961-77791980 | MS.gene05233:CDS | 45.0% | |
| GTCCTAACCATTCCTTAGTG+TGG | + | chr6.2:77791811-77791830 | MS.gene05233:CDS | 45.0% | |
| GTGAGGACAATGCAAAGAGA+AGG | - | chr6.2:77791479-77791498 | None:intergenic | 45.0% | |
| TGATCCAAGTAGTGGTTGTG+AGG | - | chr6.2:77791496-77791515 | None:intergenic | 45.0% | |
| TTGTCCTCACAACCACTACT+TGG | + | chr6.2:77791489-77791508 | MS.gene05233:CDS | 45.0% | |
| ! | TTAACGGGTGTGAACCTCAA+CGG | - | chr6.2:77791717-77791736 | None:intergenic | 45.0% |
| ACATGGTTGCAAGTAGGCCT+AGG | - | chr6.2:77791981-77792000 | None:intergenic | 50.0% | |
| CATGGTTGCAAGTAGGCCTA+GGG | - | chr6.2:77791980-77791999 | None:intergenic | 50.0% | |
| GCTTCAGCTGATCCAAGTAG+TGG | - | chr6.2:77791504-77791523 | None:intergenic | 50.0% | |
| GGCATTGCTCTTGAATCCGT+CGG | + | chr6.2:77791642-77791661 | MS.gene05233:CDS | 50.0% | |
| AAGAGGGCAAGATTCGCCGA+CGG | - | chr6.2:77791661-77791680 | None:intergenic | 55.0% | |
| GTAGGCCTAGGGCACACATT+AGG | - | chr6.2:77791969-77791988 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 77791450 | 77792094 | 77791450 | ID=MS.gene05233 |
| chr6.2 | mRNA | 77791450 | 77792094 | 77791450 | ID=MS.gene05233.t1;Parent=MS.gene05233 |
| chr6.2 | exon | 77791450 | 77792094 | 77791450 | ID=MS.gene05233.t1.exon1;Parent=MS.gene05233.t1 |
| chr6.2 | CDS | 77791450 | 77792094 | 77791450 | ID=cds.MS.gene05233.t1;Parent=MS.gene05233.t1 |
| Gene Sequence |
| Protein sequence |
