Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42745.t1 | XP_013445322.1 | 96 | 399 | 11 | 1 | 1 | 399 | 1 | 394 | 2.80E-207 | 731.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42745.t1 | Q0WU02 | 73.5 | 378 | 90 | 2 | 19 | 396 | 59 | 426 | 2.5e-156 | 553.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42745.t1 | A0A072TRA6 | 96.0 | 399 | 11 | 1 | 1 | 399 | 1 | 394 | 2.0e-207 | 731.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene05112 | MS.gene42745 | PPI |
MS.gene53865 | MS.gene42745 | PPI |
MS.gene008424 | MS.gene42745 | PPI |
MS.gene049605 | MS.gene42745 | PPI |
MS.gene032465 | MS.gene42745 | PPI |
MS.gene92476 | MS.gene42745 | PPI |
MS.gene061402 | MS.gene42745 | PPI |
MS.gene98420 | MS.gene42745 | PPI |
MS.gene78686 | MS.gene42745 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42745.t1 | MTR_8g046550 | 96.241 | 399 | 10 | 1 | 1 | 399 | 1 | 394 | 0.0 | 793 |
MS.gene42745.t1 | MTR_2g064405 | 77.945 | 399 | 74 | 4 | 8 | 399 | 2 | 393 | 0.0 | 610 |
MS.gene42745.t1 | MTR_2g064405 | 85.759 | 316 | 45 | 0 | 84 | 399 | 1 | 316 | 0.0 | 542 |
MS.gene42745.t1 | MTR_3g080090 | 62.982 | 389 | 131 | 2 | 10 | 398 | 23 | 398 | 9.53e-176 | 496 |
MS.gene42745.t1 | MTR_7g022890 | 61.376 | 378 | 133 | 5 | 20 | 395 | 29 | 395 | 3.75e-162 | 461 |
MS.gene42745.t1 | MTR_7g022890 | 65.868 | 334 | 112 | 2 | 63 | 395 | 10 | 342 | 5.85e-161 | 456 |
MS.gene42745.t1 | MTR_3g062610 | 55.589 | 331 | 140 | 4 | 69 | 398 | 72 | 396 | 6.22e-128 | 374 |
MS.gene42745.t1 | MTR_5g075680 | 54.683 | 331 | 143 | 4 | 69 | 398 | 12 | 336 | 1.23e-125 | 366 |
MS.gene42745.t1 | MTR_5g075680 | 54.683 | 331 | 143 | 4 | 69 | 398 | 65 | 389 | 2.90e-125 | 367 |
MS.gene42745.t1 | MTR_3g062610 | 52.137 | 234 | 106 | 3 | 69 | 301 | 72 | 300 | 4.93e-79 | 247 |
MS.gene42745.t1 | MTR_5g075680 | 49.200 | 250 | 120 | 4 | 69 | 317 | 65 | 308 | 3.71e-76 | 239 |
MS.gene42745.t1 | MTR_5g075680 | 46.196 | 184 | 93 | 3 | 69 | 251 | 65 | 243 | 4.84e-47 | 161 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42745.t1 | AT1G16310 | 73.810 | 378 | 89 | 2 | 19 | 396 | 59 | 426 | 0.0 | 565 |
MS.gene42745.t1 | AT1G79520 | 72.585 | 383 | 98 | 3 | 17 | 399 | 27 | 402 | 0.0 | 556 |
MS.gene42745.t1 | AT1G79520 | 70.483 | 393 | 101 | 3 | 17 | 399 | 27 | 414 | 0.0 | 552 |
MS.gene42745.t1 | AT1G79520 | 77.876 | 339 | 75 | 0 | 61 | 399 | 11 | 349 | 0.0 | 548 |
MS.gene42745.t1 | AT1G79520 | 77.876 | 339 | 75 | 0 | 61 | 399 | 11 | 349 | 0.0 | 548 |
MS.gene42745.t1 | AT1G16310 | 80.192 | 313 | 62 | 0 | 84 | 396 | 1 | 313 | 0.0 | 515 |
MS.gene42745.t1 | AT2G39450 | 60.317 | 378 | 135 | 5 | 20 | 395 | 25 | 389 | 2.81e-140 | 405 |
MS.gene42745.t1 | AT3G58060 | 52.601 | 346 | 158 | 5 | 57 | 398 | 61 | 404 | 2.12e-123 | 363 |
MS.gene42745.t1 | AT3G58060 | 52.601 | 346 | 158 | 5 | 57 | 398 | 61 | 404 | 2.12e-123 | 363 |
MS.gene42745.t1 | AT2G47830 | 22.300 | 287 | 198 | 8 | 120 | 386 | 84 | 365 | 4.34e-11 | 64.7 |
Find 74 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTGTGTGCTTGATTTAA+AGG | 0.123675 | 8.2:-54841040 | None:intergenic |
TTCCAATTGGATAGTGAAAA+TGG | 0.205432 | 8.2:-54839515 | None:intergenic |
AACTCACTATGATTCATTTC+AGG | 0.278686 | 8.2:-54839969 | None:intergenic |
TGATTTAAAGGCATGTCTTC+TGG | 0.282313 | 8.2:-54841028 | None:intergenic |
GAAAGTTGACATATCTAATA+TGG | 0.286746 | 8.2:+54840918 | MS.gene42745:CDS |
TGTTGGCTGTCAAGTTCTAT+TGG | 0.308737 | 8.2:+54840144 | MS.gene42745:CDS |
CTGTGAGAGCATACACATTT+GGG | 0.317038 | 8.2:+54840972 | MS.gene42745:CDS |
TTAAATCAAGCACACAATAT+TGG | 0.317732 | 8.2:+54841043 | MS.gene42745:CDS |
ATTACTATACTTACTGTTAC+CGG | 0.327029 | 8.2:-54837107 | None:intergenic |
TCTACCTCGGTAAGACTTCC+TGG | 0.333653 | 8.2:-54838955 | None:intergenic |
TTCCACCCTGGATTCTCTCT+TGG | 0.347562 | 8.2:+54839437 | MS.gene42745:CDS |
TGCATCAGTGATGGCAACTT+TGG | 0.359219 | 8.2:+54839779 | MS.gene42745:CDS |
GTCAACTTTCCTAGAAAATC+AGG | 0.364143 | 8.2:-54840905 | None:intergenic |
TCTCTCTTGGATCTCTTGTC+AGG | 0.366198 | 8.2:+54839450 | MS.gene42745:CDS |
GAGAATGTATCATCTCTAAT+TGG | 0.369305 | 8.2:+54840869 | MS.gene42745:CDS |
CTATGTGCTTAACCTCTTCA+TGG | 0.378933 | 8.2:-54840946 | None:intergenic |
GCATCAGTGATGGCAACTTT+GGG | 0.385511 | 8.2:+54839780 | MS.gene42745:CDS |
TATACCATCATCTTGTGTTC+AGG | 0.390318 | 8.2:-54841148 | None:intergenic |
ACTGTGAGAGCATACACATT+TGG | 0.397157 | 8.2:+54840971 | MS.gene42745:CDS |
ACAAAAGCTCTTTCAACTTC+AGG | 0.412332 | 8.2:-54841097 | None:intergenic |
AGCAGCTAATCCAACTGAAT+TGG | 0.421069 | 8.2:-54840117 | None:intergenic |
ATGGATACTATGACTGAAAC+AGG | 0.431125 | 8.2:+54838925 | MS.gene42745:CDS |
CGTTGTACACAATCAATACA+TGG | 0.448712 | 8.2:+54840831 | MS.gene42745:CDS |
TCTTGTCAGGATTCATATTG+TGG | 0.452691 | 8.2:+54839463 | MS.gene42745:CDS |
TTCAGTTTCCATGATGATGA+AGG | 0.462307 | 8.2:-54836980 | None:intergenic |
CCACGTTCCTTCACTTTCAG+TGG | 0.463244 | 8.2:+54837070 | MS.gene42745:CDS |
AGCTGTGATTGCTTCCACCC+TGG | 0.464095 | 8.2:+54839425 | MS.gene42745:CDS |
TGGATTAGCTGCTGCTGTGT+TGG | 0.467111 | 8.2:+54840127 | MS.gene42745:CDS |
TGTGTCAAATGCAGTTAACT+TGG | 0.467579 | 8.2:+54839356 | MS.gene42745:CDS |
TGCAGAATACTATAAACAAC+AGG | 0.473003 | 8.2:+54838876 | MS.gene42745:CDS |
TTCAACAATCACACTTTCTC+CGG | 0.475994 | 8.2:-54836957 | None:intergenic |
CTTGGTACTATTTGCAGCAA+AGG | 0.479678 | 8.2:+54839374 | MS.gene42745:CDS |
CAACAGGAGAGGCTCCTTGA+GGG | 0.480373 | 8.2:+54838892 | MS.gene42745:CDS |
AGAGATCCAAGAGAGAATCC+AGG | 0.485355 | 8.2:-54839443 | None:intergenic |
TTGTTGAACCTTCATCATCA+TGG | 0.489038 | 8.2:+54836972 | MS.gene42745:CDS |
TGTTACCGGGTTTGCGAACA+AGG | 0.489300 | 8.2:-54837093 | None:intergenic |
GATGTTATTACCAATTCAGT+TGG | 0.495698 | 8.2:+54840107 | MS.gene42745:CDS |
ATTGGATAGTGAAAATGGTT+TGG | 0.503302 | 8.2:-54839510 | None:intergenic |
AGTGGCCTTGTTCGCAAACC+CGG | 0.504184 | 8.2:+54837088 | MS.gene42745:CDS |
CTATTGGTGGATCGATCCAT+TGG | 0.511645 | 8.2:+54840160 | MS.gene42745:CDS |
GAGAGTGACGGCGGCGCCAC+CGG | 0.511666 | 8.2:+54836938 | MS.gene42745:CDS |
GAGATGGATGATCGCGATCA+TGG | 0.515677 | 8.2:+54839992 | MS.gene42745:CDS |
TTACTATACTTACTGTTACC+GGG | 0.520070 | 8.2:-54837106 | None:intergenic |
TGGCTGTCAAGTTCTATTGG+TGG | 0.535980 | 8.2:+54840147 | MS.gene42745:CDS |
CCATGTCATTATAGCCCTCA+AGG | 0.536767 | 8.2:-54838906 | None:intergenic |
TATTGGTGGATCGATCCATT+GGG | 0.546329 | 8.2:+54840161 | MS.gene42745:CDS |
GAGATCCAAGAGAGAATCCA+GGG | 0.568691 | 8.2:-54839442 | None:intergenic |
TGAATCATAGTGAGTTGAGA+TGG | 0.568901 | 8.2:+54839976 | MS.gene42745:CDS |
AAGTGAAGGAACGTGGTTGA+CGG | 0.568954 | 8.2:-54837063 | None:intergenic |
AAAACAGTGGTCTTGTGCAT+AGG | 0.570292 | 8.2:-54840084 | None:intergenic |
GTGGTTGACGGTTATGATGA+TGG | 0.580191 | 8.2:-54837051 | None:intergenic |
CCTTGAGGGCTATAATGACA+TGG | 0.584762 | 8.2:+54838906 | MS.gene42745:CDS |
AACAATCACACTTTCTCCGG+TGG | 0.594350 | 8.2:-54836954 | None:intergenic |
ATGTATCATCTCTAATTGGA+AGG | 0.601705 | 8.2:+54840873 | MS.gene42745:CDS |
CAGGCCTGAACACAAGATGA+TGG | 0.605331 | 8.2:+54841144 | MS.gene42745:CDS |
TGGCAGGCAAATTATTGCAA+AGG | 0.608764 | 8.2:+54839824 | MS.gene42745:CDS |
GATGGTGATGATGATGATCA+TGG | 0.611195 | 8.2:-54837033 | None:intergenic |
ACAACAGGAGAGGCTCCTTG+AGG | 0.623404 | 8.2:+54838891 | MS.gene42745:CDS |
CTCACAATAATAGCTCCCAA+TGG | 0.632925 | 8.2:-54840176 | None:intergenic |
TAAAACATGTCGGAGAGTGA+CGG | 0.635376 | 8.2:+54836926 | None:intergenic |
AACAAGGCCACTGAAAGTGA+AGG | 0.641573 | 8.2:-54837077 | None:intergenic |
GATTTCAGAGAAGCAACGCA+AGG | 0.647581 | 8.2:+54838852 | MS.gene42745:intron |
AATATGGAATCACCATGAAG+AGG | 0.655738 | 8.2:+54840934 | MS.gene42745:CDS |
GTTGTACACAATCAATACAT+GGG | 0.667462 | 8.2:+54840832 | MS.gene42745:CDS |
TGGTAATAACATCAAAACAG+TGG | 0.669306 | 8.2:-54840097 | None:intergenic |
TGATGATCATGGTGATGATG+TGG | 0.670441 | 8.2:-54837022 | None:intergenic |
AATACTATAAACAACAGGAG+AGG | 0.673271 | 8.2:+54838881 | MS.gene42745:CDS |
ATCATGGAAACTGAATGTGA+AGG | 0.674792 | 8.2:+54836988 | MS.gene42745:CDS |
AACTTTCCTAGAAAATCAGG+TGG | 0.675539 | 8.2:-54840902 | None:intergenic |
CCACTGAAAGTGAAGGAACG+TGG | 0.688283 | 8.2:-54837070 | None:intergenic |
ATCCAAGAGAGAATCCAGGG+TGG | 0.694838 | 8.2:-54839439 | None:intergenic |
TGTGAGAGCATACACATTTG+GGG | 0.703573 | 8.2:+54840973 | MS.gene42745:CDS |
CATTAAAATGAACTTCACAA+CGG | 0.715661 | 8.2:-54840024 | None:intergenic |
AACATGTCGGAGAGTGACGG+CGG | 0.720516 | 8.2:+54836929 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCAAAACAAGAATAAAAT+AGG | - | chr8.2:54837663-54837682 | None:intergenic | 15.0% |
!! | ATCAAAACAAGAATAAAATA+GGG | - | chr8.2:54837662-54837681 | None:intergenic | 15.0% |
!! | TGAAAAATATACATTATTGA+TGG | - | chr8.2:54837570-54837589 | None:intergenic | 15.0% |
!! | TTGAATTAAAATGAAACTTA+TGG | - | chr8.2:54838135-54838154 | None:intergenic | 15.0% |
!!! | ATACTTTAAGAAAAGATAAA+GGG | - | chr8.2:54838407-54838426 | None:intergenic | 15.0% |
!!! | ATGATTTTTTTTTTGCTTAA+TGG | + | chr8.2:54838656-54838675 | MS.gene42745:intron | 15.0% |
!!! | ATTGTTGAATAATTTTTTAG+TGG | + | chr8.2:54837958-54837977 | MS.gene42745:intron | 15.0% |
!!! | TATACTTTAAGAAAAGATAA+AGG | - | chr8.2:54838408-54838427 | None:intergenic | 15.0% |
!! | AACATATCATACTTAATTAG+TGG | - | chr8.2:54838335-54838354 | None:intergenic | 20.0% |
!! | ATCAAAATTCCAAACATAAA+CGG | - | chr8.2:54838059-54838078 | None:intergenic | 20.0% |
!! | TCAGTTACATTTATAAACTA+TGG | - | chr8.2:54839133-54839152 | None:intergenic | 20.0% |
!!! | ACTAGTTTTTGTCAATATAT+AGG | - | chr8.2:54839738-54839757 | None:intergenic | 20.0% |
!!! | GTTTTCTTTTTGAGTTTTTT+TGG | + | chr8.2:54838821-54838840 | MS.gene42745:intron | 20.0% |
!!! | TGATTGTATTAGTTTTAGTT+GGG | + | chr8.2:54838075-54838094 | MS.gene42745:intron | 20.0% |
!!! | TTGAATAATTTTTTAGTGGT+TGG | + | chr8.2:54837962-54837981 | MS.gene42745:intron | 20.0% |
!!! | TTGATTGTATTAGTTTTAGT+TGG | + | chr8.2:54838074-54838093 | MS.gene42745:intron | 20.0% |
!!! | TTGGTAACTATAAAATTTAG+TGG | - | chr8.2:54840212-54840231 | None:intergenic | 20.0% |
!!! | TTGTTATTTTTGTTTACTTG+TGG | + | chr8.2:54840697-54840716 | MS.gene42745:intron | 20.0% |
! | AACGTTAAATTCTTGAAGAT+TGG | + | chr8.2:54840309-54840328 | MS.gene42745:intron | 25.0% |
! | AAGTATATGCAATATGCAAA+AGG | + | chr8.2:54838421-54838440 | MS.gene42745:intron | 25.0% |
! | AAGTTCATGAACAAAATTGA+TGG | + | chr8.2:54840728-54840747 | MS.gene42745:intron | 25.0% |
! | ACTATCCAATTGGAAAAAAA+CGG | + | chr8.2:54839523-54839542 | MS.gene42745:CDS | 25.0% |
! | ATATTGTGTGCTTGATTTAA+AGG | - | chr8.2:54841043-54841062 | None:intergenic | 25.0% |
! | ATTACTATACTTACTGTTAC+CGG | - | chr8.2:54837110-54837129 | None:intergenic | 25.0% |
! | CATTAAAATGAACTTCACAA+CGG | - | chr8.2:54840027-54840046 | None:intergenic | 25.0% |
! | CATTCAATTAATGACGTATA+TGG | + | chr8.2:54837814-54837833 | MS.gene42745:intron | 25.0% |
! | CATTCATTAAATGATGTATG+TGG | - | chr8.2:54837853-54837872 | None:intergenic | 25.0% |
! | GATTTCAATTATTTGGATTG+TGG | + | chr8.2:54840286-54840305 | MS.gene42745:intron | 25.0% |
! | GGTCTTAGATTTCAATTATT+TGG | + | chr8.2:54840279-54840298 | MS.gene42745:intron | 25.0% |
! | GTATATCATATATGAGTACA+TGG | - | chr8.2:54837734-54837753 | None:intergenic | 25.0% |
! | TAAGTATGATATGTTGAGTT+AGG | + | chr8.2:54838340-54838359 | MS.gene42745:intron | 25.0% |
! | TCAATCTTATCTTTGTGAAA+TGG | + | chr8.2:54838799-54838818 | MS.gene42745:intron | 25.0% |
! | TGTTTGTATTTCATAGCAAA+AGG | + | chr8.2:54838279-54838298 | MS.gene42745:intron | 25.0% |
! | TTAAATCAAGCACACAATAT+TGG | + | chr8.2:54841043-54841062 | MS.gene42745:CDS | 25.0% |
!! | ACACGATTAAAAATAATGGA+CGG | - | chr8.2:54840424-54840443 | None:intergenic | 25.0% |
!! | GCAACATTTGTTACAAAATA+AGG | - | chr8.2:54839036-54839055 | None:intergenic | 25.0% |
!! | TTGATTTTGAATATACTCAC+AGG | + | chr8.2:54841125-54841144 | MS.gene42745:CDS | 25.0% |
!! | TTGCTATTATAAAAAGCAGA+TGG | - | chr8.2:54838470-54838489 | None:intergenic | 25.0% |
!!! | AAAGATAAAGGGTATTATAG+AGG | - | chr8.2:54838396-54838415 | None:intergenic | 25.0% |
!!! | AGATAATCTCATTTTCAAGT+AGG | - | chr8.2:54838516-54838535 | None:intergenic | 25.0% |
!!! | CCATAATGTAAATGTTTTAG+AGG | - | chr8.2:54839097-54839116 | None:intergenic | 25.0% |
!!! | CCTCTAAAACATTTACATTA+TGG | + | chr8.2:54839094-54839113 | MS.gene42745:intron | 25.0% |
!!! | TATTCTTGTTTTGATTGTGT+TGG | + | chr8.2:54837667-54837686 | MS.gene42745:intron | 25.0% |
!!! | TTGTTTTTTCCGTTTATGTT+TGG | + | chr8.2:54838047-54838066 | MS.gene42745:intron | 25.0% |
!!! | TTTTTTTTTTGCAGTCTTCT+TGG | + | chr8.2:54837995-54838014 | MS.gene42745:intron | 25.0% |
AAAAAATGAAGACTTACCAC+TGG | - | chr8.2:54839555-54839574 | None:intergenic | 30.0% | |
AAAACATCTTTCATGAGTGT+TGG | + | chr8.2:54837924-54837943 | MS.gene42745:intron | 30.0% | |
AAACATCTTTCATGAGTGTT+GGG | + | chr8.2:54837925-54837944 | MS.gene42745:intron | 30.0% | |
AAACATTTACATTATGGTCG+CGG | + | chr8.2:54839100-54839119 | MS.gene42745:intron | 30.0% | |
AACAGACAAGATTACAAGTA+AGG | - | chr8.2:54839915-54839934 | None:intergenic | 30.0% | |
AACTCACTATGATTCATTTC+AGG | - | chr8.2:54839972-54839991 | None:intergenic | 30.0% | |
AATACTATAAACAACAGGAG+AGG | + | chr8.2:54838881-54838900 | MS.gene42745:CDS | 30.0% | |
AATCACAACTGAAATTGCTT+CGG | - | chr8.2:54839064-54839083 | None:intergenic | 30.0% | |
ACATCTTCAGAAGAAGAAAA+CGG | - | chr8.2:54837152-54837171 | None:intergenic | 30.0% | |
AGCCACACGATTAAAAATAA+TGG | - | chr8.2:54840428-54840447 | None:intergenic | 30.0% | |
AGTTCACATATTAGTGATTC+TGG | - | chr8.2:54839279-54839298 | None:intergenic | 30.0% | |
ATAGCATAGACTAACGAAAT+AGG | + | chr8.2:54840651-54840670 | MS.gene42745:intron | 30.0% | |
ATGGTCCAAAATTCTATAAG+TGG | - | chr8.2:54838451-54838470 | None:intergenic | 30.0% | |
ATGTAATCATGTGTCAGTAT+CGG | - | chr8.2:54838221-54838240 | None:intergenic | 30.0% | |
ATGTATCATCTCTAATTGGA+AGG | + | chr8.2:54840873-54840892 | MS.gene42745:CDS | 30.0% | |
ATTGGATAGTGAAAATGGTT+TGG | - | chr8.2:54839513-54839532 | None:intergenic | 30.0% | |
CATCTCTTGTTAGTAATTTG+AGG | + | chr8.2:54838607-54838626 | MS.gene42745:intron | 30.0% | |
CATTAACACTAATACACCTT+CGG | - | chr8.2:54837546-54837565 | None:intergenic | 30.0% | |
GACACAAATTAAGTATGTTC+CGG | + | chr8.2:54838175-54838194 | MS.gene42745:intron | 30.0% | |
GAGAATGTATCATCTCTAAT+TGG | + | chr8.2:54840869-54840888 | MS.gene42745:CDS | 30.0% | |
GAGATTGCTAAATTAGAGAT+TGG | - | chr8.2:54840231-54840250 | None:intergenic | 30.0% | |
GAGTAAACTAGTAATTGTCT+GGG | + | chr8.2:54840362-54840381 | MS.gene42745:intron | 30.0% | |
GATATGTTGAGTTAGGAAAT+TGG | + | chr8.2:54838347-54838366 | MS.gene42745:intron | 30.0% | |
GATGTTATTACCAATTCAGT+TGG | + | chr8.2:54840107-54840126 | MS.gene42745:CDS | 30.0% | |
GCACAATTGTAGATAATACT+TGG | + | chr8.2:54838683-54838702 | MS.gene42745:intron | 30.0% | |
GTATATTCTGTTACTCACAA+AGG | - | chr8.2:54838113-54838132 | None:intergenic | 30.0% | |
GTTGTACACAATCAATACAT+GGG | + | chr8.2:54840832-54840851 | MS.gene42745:CDS | 30.0% | |
TATGAGTACATGGTTCATAT+AGG | - | chr8.2:54837724-54837743 | None:intergenic | 30.0% | |
TGACAAAAACTAGTTATGCA+GGG | + | chr8.2:54839744-54839763 | MS.gene42745:intron | 30.0% | |
TGAGTGAAAATGATAGTCAT+TGG | + | chr8.2:54839602-54839621 | MS.gene42745:intron | 30.0% | |
TGCAGAATACTATAAACAAC+AGG | + | chr8.2:54838876-54838895 | MS.gene42745:CDS | 30.0% | |
TGGTAATAACATCAAAACAG+TGG | - | chr8.2:54840100-54840119 | None:intergenic | 30.0% | |
TTACTATACTTACTGTTACC+GGG | - | chr8.2:54837109-54837128 | None:intergenic | 30.0% | |
TTCCAATTGGATAGTGAAAA+TGG | - | chr8.2:54839518-54839537 | None:intergenic | 30.0% | |
TTGACAAAAACTAGTTATGC+AGG | + | chr8.2:54839743-54839762 | MS.gene42745:intron | 30.0% | |
TTGCTATGAAATACAAACAC+CGG | - | chr8.2:54838278-54838297 | None:intergenic | 30.0% | |
! | AACCATTTTCACTATCCAAT+TGG | + | chr8.2:54839513-54839532 | MS.gene42745:CDS | 30.0% |
! | CGTTGTGAAGTTCATTTTAA+TGG | + | chr8.2:54840025-54840044 | MS.gene42745:CDS | 30.0% |
! | GTTGTCCACTTATAGAATTT+TGG | + | chr8.2:54838443-54838462 | MS.gene42745:intron | 30.0% |
! | GTTTTGCTTATAATAGTGAC+CGG | + | chr8.2:54837888-54837907 | MS.gene42745:intron | 30.0% |
! | GTTTTGCTTATAATAGTGAC+CGG | - | chr8.2:54837907-54837888 | None:intergenic | 30.0% |
! | TGACACATTTAAAATCCAGT+TGG | - | chr8.2:54838723-54838742 | None:intergenic | 30.0% |
! | TTTTAAACAATCTCGACCAT+CGG | + | chr8.2:54840472-54840491 | MS.gene42745:intron | 30.0% |
! | TTTTAATGGTATACTGTCGA+AGG | + | chr8.2:54840039-54840058 | MS.gene42745:CDS | 30.0% |
!! | ATAAGGCAGTTGATTTTTGA+AGG | + | chr8.2:54840500-54840519 | MS.gene42745:intron | 30.0% |
!! | CACGATTAAAAATAATGGAC+GGG | - | chr8.2:54840423-54840442 | None:intergenic | 30.0% |
!! | CTACTGTCATACTTTTTGTT+TGG | + | chr8.2:54838534-54838553 | MS.gene42745:intron | 30.0% |
!! | CTTTTGTGTATGTGATTTGT+AGG | + | chr8.2:54837621-54837640 | MS.gene42745:intron | 30.0% |
!! | TAAGGCAGTTGATTTTTGAA+GGG | + | chr8.2:54840501-54840520 | MS.gene42745:intron | 30.0% |
!!! | AAAATGGTTTGGTGTTTTCA+TGG | - | chr8.2:54839502-54839521 | None:intergenic | 30.0% |
!!! | CATTTTCAAGTAGGTACTAA+AGG | - | chr8.2:54838507-54838526 | None:intergenic | 30.0% |
!!! | GTCCATTATTTTTAATCGTG+TGG | + | chr8.2:54840423-54840442 | MS.gene42745:intron | 30.0% |
!!! | TGTTTTTTAATTACACCCTC+CGG | - | chr8.2:54837910-54837929 | None:intergenic | 30.0% |
AAATGCAGATCACAGAAAAC+TGG | - | chr8.2:54839696-54839715 | None:intergenic | 35.0% | |
AACTTTCCTAGAAAATCAGG+TGG | - | chr8.2:54840905-54840924 | None:intergenic | 35.0% | |
AATATGGAATCACCATGAAG+AGG | + | chr8.2:54840934-54840953 | MS.gene42745:CDS | 35.0% | |
AATCGTTAGAGACTACATGA+GGG | - | chr8.2:54840567-54840586 | None:intergenic | 35.0% | |
ACAAAAGCTCTTTCAACTTC+AGG | - | chr8.2:54841100-54841119 | None:intergenic | 35.0% | |
ACTTGCACATAATTCCTCAA+GGG | + | chr8.2:54840258-54840277 | MS.gene42745:intron | 35.0% | |
ATCATGGAAACTGAATGTGA+AGG | + | chr8.2:54836988-54837007 | MS.gene42745:CDS | 35.0% | |
ATGGATACTATGACTGAAAC+AGG | + | chr8.2:54838925-54838944 | MS.gene42745:CDS | 35.0% | |
ATGTGAACTCTATGATTCTC+AGG | + | chr8.2:54839290-54839309 | MS.gene42745:intron | 35.0% | |
ATTCAATCACCAAACACTCT+TGG | - | chr8.2:54839583-54839602 | None:intergenic | 35.0% | |
CGAGTAAACTAGTAATTGTC+TGG | + | chr8.2:54840361-54840380 | MS.gene42745:intron | 35.0% | |
CGTTGTACACAATCAATACA+TGG | + | chr8.2:54840831-54840850 | MS.gene42745:CDS | 35.0% | |
GTCAACTTTCCTAGAAAATC+AGG | - | chr8.2:54840908-54840927 | None:intergenic | 35.0% | |
TATACCATCATCTTGTGTTC+AGG | - | chr8.2:54841151-54841170 | None:intergenic | 35.0% | |
TATAGAGGCTGATCTTCAAA+GGG | - | chr8.2:54838381-54838400 | None:intergenic | 35.0% | |
TCTTGTCAGGATTCATATTG+TGG | + | chr8.2:54839463-54839482 | MS.gene42745:CDS | 35.0% | |
TGTACAACGCTATCTACATA+CGG | - | chr8.2:54840820-54840839 | None:intergenic | 35.0% | |
TGTGTCAAATGCAGTTAACT+TGG | + | chr8.2:54839356-54839375 | MS.gene42745:CDS | 35.0% | |
TTATAGAGGCTGATCTTCAA+AGG | - | chr8.2:54838382-54838401 | None:intergenic | 35.0% | |
TTCAACAATCACACTTTCTC+CGG | - | chr8.2:54836960-54836979 | None:intergenic | 35.0% | |
TTGTTGAACCTTCATCATCA+TGG | + | chr8.2:54836972-54836991 | MS.gene42745:CDS | 35.0% | |
! | ATTGAAATCTAAGACCCTTG+AGG | - | chr8.2:54840275-54840294 | None:intergenic | 35.0% |
! | TATTCGTTATTTGTTACCGC+CGG | + | chr8.2:54840753-54840772 | MS.gene42745:intron | 35.0% |
! | TGAATCATAGTGAGTTGAGA+TGG | + | chr8.2:54839976-54839995 | MS.gene42745:CDS | 35.0% |
! | TGATTTAAAGGCATGTCTTC+TGG | - | chr8.2:54841031-54841050 | None:intergenic | 35.0% |
! | TTCAGTTTCCATGATGATGA+AGG | - | chr8.2:54836983-54837002 | None:intergenic | 35.0% |
!! | GATTATTGCGTGTTTTTGCA+AGG | - | chr8.2:54840397-54840416 | None:intergenic | 35.0% |
!! | GGCTCATTATTTTGTTGAAG+TGG | + | chr8.2:54840994-54841013 | MS.gene42745:CDS | 35.0% |
!!! | CAGATGCATGCTATTTTATG+TGG | - | chr8.2:54839170-54839189 | None:intergenic | 35.0% |
!!! | CATTGTTTTTGCATCAGTGA+TGG | + | chr8.2:54839770-54839789 | MS.gene42745:CDS | 35.0% |
!!! | CTTGTTTTGATTGTGTTGGT+TGG | + | chr8.2:54837671-54837690 | MS.gene42745:intron | 35.0% |
!!! | TGCATCCGTTTTTTTCCAAT+TGG | - | chr8.2:54839531-54839550 | None:intergenic | 35.0% |
!!! | TTGCAGATTTTGATTGAGTC+TGG | + | chr8.2:54839804-54839823 | MS.gene42745:CDS | 35.0% |
!!! | TTTTAACCTCCAAGAGTGTT+TGG | + | chr8.2:54839571-54839590 | MS.gene42745:intron | 35.0% |
AACTGAAATTGCTTCGGCAT+TGG | - | chr8.2:54839058-54839077 | None:intergenic | 40.0% | |
ACCAATAACACGACTGAAAC+AGG | + | chr8.2:54839008-54839027 | MS.gene42745:intron | 40.0% | |
AGATCAATCATGAAACCGAC+CGG | - | chr8.2:54840775-54840794 | None:intergenic | 40.0% | |
AGCAGCTAATCCAACTGAAT+TGG | - | chr8.2:54840120-54840139 | None:intergenic | 40.0% | |
ATCATTATCGTGTCTGGTGT+CGG | + | chr8.2:54837592-54837611 | MS.gene42745:intron | 40.0% | |
CAAACAACACTTCATACCGA+AGG | + | chr8.2:54837527-54837546 | MS.gene42745:intron | 40.0% | |
CAATCGTTAGAGACTACATG+AGG | - | chr8.2:54840568-54840587 | None:intergenic | 40.0% | |
CGCGACAAAATAATCTACCT+CGG | - | chr8.2:54838971-54838990 | None:intergenic | 40.0% | |
CTATGAACGACACTAACATG+TGG | - | chr8.2:54837252-54837271 | None:intergenic | 40.0% | |
CTATGTGCTTAACCTCTTCA+TGG | - | chr8.2:54840949-54840968 | None:intergenic | 40.0% | |
CTCACAATAATAGCTCCCAA+TGG | - | chr8.2:54840179-54840198 | None:intergenic | 40.0% | |
CTTGGTACTATTTGCAGCAA+AGG | + | chr8.2:54839374-54839393 | MS.gene42745:CDS | 40.0% | |
GAAAACGGAGAGAGAAAGAA+AGG | - | chr8.2:54837137-54837156 | None:intergenic | 40.0% | |
GACTACATGAGGGATAAAGT+AGG | - | chr8.2:54840557-54840576 | None:intergenic | 40.0% | |
GACTTGCACATAATTCCTCA+AGG | + | chr8.2:54840257-54840276 | MS.gene42745:intron | 40.0% | |
GGTTCATATAGGCACGTAAT+TGG | - | chr8.2:54837713-54837732 | None:intergenic | 40.0% | |
TAGGCACGTAATTGGTGAAA+AGG | - | chr8.2:54837705-54837724 | None:intergenic | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | + | chr8.2:54837892-54837911 | MS.gene42745:intron | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | - | chr8.2:54837911-54837892 | None:intergenic | 40.0% | |
TGGCAGGCAAATTATTGCAA+AGG | + | chr8.2:54839824-54839843 | MS.gene42745:CDS | 40.0% | |
TTCACCATCATTATCGTGTC+TGG | + | chr8.2:54837586-54837605 | MS.gene42745:intron | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | + | chr8.2:54837891-54837910 | MS.gene42745:intron | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | - | chr8.2:54837910-54837891 | None:intergenic | 40.0% | |
! | ACTAGTAATTGTCTGGGACA+CGG | + | chr8.2:54840368-54840387 | MS.gene42745:intron | 40.0% |
! | ACTGTGAGAGCATACACATT+TGG | + | chr8.2:54840971-54840990 | MS.gene42745:CDS | 40.0% |
! | CACATGTTAGTGTCGTTCAT+AGG | + | chr8.2:54837250-54837269 | MS.gene42745:intron | 40.0% |
! | CTGTGAGAGCATACACATTT+GGG | + | chr8.2:54840972-54840991 | MS.gene42745:CDS | 40.0% |
! | GATGGTGATGATGATGATCA+TGG | - | chr8.2:54837036-54837055 | None:intergenic | 40.0% |
! | TATTGGTGGATCGATCCATT+GGG | + | chr8.2:54840161-54840180 | MS.gene42745:CDS | 40.0% |
! | TGATGATCATGGTGATGATG+TGG | - | chr8.2:54837025-54837044 | None:intergenic | 40.0% |
! | TGTGAGAGCATACACATTTG+GGG | + | chr8.2:54840973-54840992 | MS.gene42745:CDS | 40.0% |
! | TGTTGGCTGTCAAGTTCTAT+TGG | + | chr8.2:54840144-54840163 | MS.gene42745:CDS | 40.0% |
! | TTTTGCAGTCTTCTTGGTGA+TGG | + | chr8.2:54838001-54838020 | MS.gene42745:intron | 40.0% |
!! | AAAACAGTGGTCTTGTGCAT+AGG | - | chr8.2:54840087-54840106 | None:intergenic | 40.0% |
!! | ACTGAAACAGGACTTTTTCC+AGG | + | chr8.2:54838937-54838956 | MS.gene42745:CDS | 40.0% |
!! | CTTCGGTATGAAGTGTTGTT+TGG | - | chr8.2:54837529-54837548 | None:intergenic | 40.0% |
!!! | AGATTTTGATTGAGTCTGGC+AGG | + | chr8.2:54839808-54839827 | MS.gene42745:CDS | 40.0% |
!!! | GTTTGGTGTTTTCATGGCAT+TGG | - | chr8.2:54839496-54839515 | None:intergenic | 40.0% |
!!! | GTTTTGATTGTGTTGGTTGG+TGG | + | chr8.2:54837674-54837693 | MS.gene42745:intron | 40.0% |
AAAAAAACGGATGCAGCCAG+TGG | + | chr8.2:54839536-54839555 | MS.gene42745:CDS | 45.0% | |
AACAAGGCCACTGAAAGTGA+AGG | - | chr8.2:54837080-54837099 | None:intergenic | 45.0% | |
AACAATCACACTTTCTCCGG+TGG | - | chr8.2:54836957-54836976 | None:intergenic | 45.0% | |
AACGGAGAGAGAAAGAAAGG+AGG | - | chr8.2:54837134-54837153 | None:intergenic | 45.0% | |
AACTGCCTTATCTAAGCCGA+TGG | - | chr8.2:54840491-54840510 | None:intergenic | 45.0% | |
AAGTGAAGGAACGTGGTTGA+CGG | - | chr8.2:54837066-54837085 | None:intergenic | 45.0% | |
ACGGAGAGAGAAAGAAAGGA+GGG | - | chr8.2:54837133-54837152 | None:intergenic | 45.0% | |
AGAGATCCAAGAGAGAATCC+AGG | - | chr8.2:54839446-54839465 | None:intergenic | 45.0% | |
CAATCACCAAACACTCTTGG+AGG | - | chr8.2:54839580-54839599 | None:intergenic | 45.0% | |
CCATGTCATTATAGCCCTCA+AGG | - | chr8.2:54838909-54838928 | None:intergenic | 45.0% | |
CCTTGAGGGCTATAATGACA+TGG | + | chr8.2:54838906-54838925 | MS.gene42745:CDS | 45.0% | |
CTGAAGATGTGTCCTTGAGT+CGG | + | chr8.2:54837162-54837181 | MS.gene42745:intron | 45.0% | |
GACACCAGACACGATAATGA+TGG | - | chr8.2:54837593-54837612 | None:intergenic | 45.0% | |
GAGATCCAAGAGAGAATCCA+GGG | - | chr8.2:54839445-54839464 | None:intergenic | 45.0% | |
GATTTCAGAGAAGCAACGCA+AGG | + | chr8.2:54838852-54838871 | MS.gene42745:intron | 45.0% | |
GCATCAGTGATGGCAACTTT+GGG | + | chr8.2:54839780-54839799 | MS.gene42745:CDS | 45.0% | |
GCCTGTTTCAGTCGTGTTAT+TGG | - | chr8.2:54839012-54839031 | None:intergenic | 45.0% | |
GTGGTTGACGGTTATGATGA+TGG | - | chr8.2:54837054-54837073 | None:intergenic | 45.0% | |
TCAACTGCATGCAACTGTTG+TGG | - | chr8.2:54837361-54837380 | None:intergenic | 45.0% | |
TCTCTCTTGGATCTCTTGTC+AGG | + | chr8.2:54839450-54839469 | MS.gene42745:CDS | 45.0% | |
TGCATCAGTGATGGCAACTT+TGG | + | chr8.2:54839779-54839798 | MS.gene42745:CDS | 45.0% | |
TGGCTGTCAAGTTCTATTGG+TGG | + | chr8.2:54840147-54840166 | MS.gene42745:CDS | 45.0% | |
TTCCGGTATCAGACATGTGT+CGG | + | chr8.2:54838192-54838211 | MS.gene42745:intron | 45.0% | |
! | ACAGCACCACCTGATTTTCT+AGG | + | chr8.2:54840896-54840915 | MS.gene42745:CDS | 45.0% |
! | CTATTGGTGGATCGATCCAT+TGG | + | chr8.2:54840160-54840179 | MS.gene42745:CDS | 45.0% |
! | GATCTAGCTTCTGAACCAAC+TGG | + | chr8.2:54838705-54838724 | MS.gene42745:intron | 45.0% |
! | TTTTCCAGGAAGTCTTACCG+AGG | + | chr8.2:54838951-54838970 | MS.gene42745:CDS | 45.0% |
!! | TGGTGTTTTCATGGCATTGG+CGG | - | chr8.2:54839493-54839512 | None:intergenic | 45.0% |
ATCCAAGAGAGAATCCAGGG+TGG | - | chr8.2:54839442-54839461 | None:intergenic | 50.0% | |
CAGGCCTGAACACAAGATGA+TGG | + | chr8.2:54841144-54841163 | MS.gene42745:CDS | 50.0% | |
CCACGTTCCTTCACTTTCAG+TGG | + | chr8.2:54837070-54837089 | MS.gene42745:CDS | 50.0% | |
CCACTGAAAGTGAAGGAACG+TGG | - | chr8.2:54837073-54837092 | None:intergenic | 50.0% | |
GAGATGGATGATCGCGATCA+TGG | + | chr8.2:54839992-54840011 | MS.gene42745:CDS | 50.0% | |
TACAAACACCGGACACGACA+CGG | - | chr8.2:54838267-54838286 | None:intergenic | 50.0% | |
TCAATCATGAAACCGACCGG+CGG | - | chr8.2:54840772-54840791 | None:intergenic | 50.0% | |
TCTACCTCGGTAAGACTTCC+TGG | - | chr8.2:54838958-54838977 | None:intergenic | 50.0% | |
TGCCGACACATGTCTGATAC+CGG | - | chr8.2:54838197-54838216 | None:intergenic | 50.0% | |
TGTTACCGGGTTTGCGAACA+AGG | - | chr8.2:54837096-54837115 | None:intergenic | 50.0% | |
TTCCACCCTGGATTCTCTCT+TGG | + | chr8.2:54839437-54839456 | MS.gene42745:CDS | 50.0% | |
! | CGTTATTTGTTACCGCCGGT+CGG | + | chr8.2:54840757-54840776 | MS.gene42745:intron | 50.0% |
!! | CTCGACCATCGGCTTAGATA+AGG | + | chr8.2:54840483-54840502 | MS.gene42745:intron | 50.0% |
!! | CTGTGTCAAACACCGACTCA+AGG | - | chr8.2:54837177-54837196 | None:intergenic | 50.0% |
!! | TCGTGTTATTGGTGCCACGT+TGG | - | chr8.2:54839001-54839020 | None:intergenic | 50.0% |
!! | TGGATTAGCTGCTGCTGTGT+TGG | + | chr8.2:54840127-54840146 | MS.gene42745:CDS | 50.0% |
ACAACAGGAGAGGCTCCTTG+AGG | + | chr8.2:54838891-54838910 | MS.gene42745:CDS | 55.0% | |
AGCTGTGATTGCTTCCACCC+TGG | + | chr8.2:54839425-54839444 | MS.gene42745:CDS | 55.0% | |
AGTCACCGAAGTACACCCTC+CGG | + | chr8.2:54837757-54837776 | MS.gene42745:intron | 55.0% | |
CAACAGGAGAGGCTCCTTGA+GGG | + | chr8.2:54838892-54838911 | MS.gene42745:CDS | 55.0% | |
! | AGTGACCGGAGGGTGTACTT+CGG | - | chr8.2:54837765-54837784 | None:intergenic | 55.0% |
! | TGTCGCGCTTGTTACCAACG+TGG | + | chr8.2:54838984-54839003 | MS.gene42745:intron | 55.0% |
!! | AGTGGCCTTGTTCGCAAACC+CGG | + | chr8.2:54837088-54837107 | MS.gene42745:CDS | 55.0% |
ACCGGACACGACACGGACAC+AGG | - | chr8.2:54838260-54838279 | None:intergenic | 65.0% | |
GCCTGTGTCCGTGTCGTGTC+CGG | + | chr8.2:54838256-54838275 | MS.gene42745:intron | 65.0% | |
GAGAGTGACGGCGGCGCCAC+CGG | + | chr8.2:54836938-54836957 | MS.gene42745:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 54836932 | 54841171 | 54836932 | ID=MS.gene42745 |
chr8.2 | mRNA | 54836932 | 54841171 | 54836932 | ID=MS.gene42745.t1;Parent=MS.gene42745 |
chr8.2 | exon | 54836932 | 54837115 | 54836932 | ID=MS.gene42745.t1.exon1;Parent=MS.gene42745.t1 |
chr8.2 | CDS | 54836932 | 54837115 | 54836932 | ID=cds.MS.gene42745.t1;Parent=MS.gene42745.t1 |
chr8.2 | exon | 54838860 | 54838972 | 54838860 | ID=MS.gene42745.t1.exon2;Parent=MS.gene42745.t1 |
chr8.2 | CDS | 54838860 | 54838972 | 54838860 | ID=cds.MS.gene42745.t1;Parent=MS.gene42745.t1 |
chr8.2 | exon | 54839312 | 54839557 | 54839312 | ID=MS.gene42745.t1.exon3;Parent=MS.gene42745.t1 |
chr8.2 | CDS | 54839312 | 54839557 | 54839312 | ID=cds.MS.gene42745.t1;Parent=MS.gene42745.t1 |
chr8.2 | exon | 54839765 | 54839845 | 54839765 | ID=MS.gene42745.t1.exon4;Parent=MS.gene42745.t1 |
chr8.2 | CDS | 54839765 | 54839845 | 54839765 | ID=cds.MS.gene42745.t1;Parent=MS.gene42745.t1 |
chr8.2 | exon | 54839963 | 54840193 | 54839963 | ID=MS.gene42745.t1.exon5;Parent=MS.gene42745.t1 |
chr8.2 | CDS | 54839963 | 54840193 | 54839963 | ID=cds.MS.gene42745.t1;Parent=MS.gene42745.t1 |
chr8.2 | exon | 54840827 | 54841171 | 54840827 | ID=MS.gene42745.t1.exon6;Parent=MS.gene42745.t1 |
chr8.2 | CDS | 54840827 | 54841171 | 54840827 | ID=cds.MS.gene42745.t1;Parent=MS.gene42745.t1 |
Gene Sequence |
Protein sequence |