Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42871.t1 | XP_003623416.1 | 97.4 | 509 | 13 | 0 | 1 | 509 | 1 | 509 | 7.90E-292 | 1012.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42871.t1 | G7KU52 | 97.4 | 509 | 13 | 0 | 1 | 509 | 1 | 509 | 5.7e-292 | 1012.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene42871 | 0.801253 | 9.83E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene42871 | 0.814343 | 1.62E-51 | -1.69E-46 |
| MS.gene051063 | MS.gene42871 | 0.800735 | 1.25E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene42871 | 0.800076 | 1.71E-48 | -1.69E-46 |
| MS.gene052133 | MS.gene42871 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene42871 | 0.820761 | 5.78E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene42871 | 0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene42871 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene42871 | 0.816086 | 6.63E-52 | -1.69E-46 |
| MS.gene056069 | MS.gene42871 | -0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene42871 | 0.814351 | 1.61E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene42871 | 0.819193 | 1.32E-52 | -1.69E-46 |
| MS.gene060165 | MS.gene42871 | 0.815526 | 8.84E-52 | -1.69E-46 |
| MS.gene060619 | MS.gene42871 | 0.81715 | 3.83E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42871.t1 | MTR_7g070530 | 97.446 | 509 | 13 | 0 | 1 | 509 | 1 | 509 | 0.0 | 1030 |
| MS.gene42871.t1 | MTR_4g013290 | 65.896 | 519 | 148 | 9 | 10 | 509 | 1 | 509 | 0.0 | 658 |
| MS.gene42871.t1 | MTR_3g031200 | 57.285 | 501 | 200 | 6 | 15 | 509 | 2 | 494 | 0.0 | 569 |
| MS.gene42871.t1 | MTR_7g101130 | 26.512 | 430 | 271 | 14 | 82 | 507 | 76 | 464 | 4.51e-34 | 134 |
| MS.gene42871.t1 | MTR_1g099090 | 43.931 | 173 | 76 | 5 | 49 | 220 | 10 | 162 | 1.79e-32 | 122 |
| MS.gene42871.t1 | MTR_8g100030 | 48.193 | 83 | 43 | 0 | 89 | 171 | 53 | 135 | 1.37e-17 | 79.7 |
| MS.gene42871.t1 | MTR_7g057130 | 75.510 | 49 | 12 | 0 | 110 | 158 | 25 | 73 | 5.36e-16 | 75.9 |
| MS.gene42871.t1 | MTR_8g089585 | 33.333 | 147 | 88 | 3 | 90 | 228 | 87 | 231 | 1.47e-14 | 73.9 |
| MS.gene42871.t1 | MTR_4g093860 | 26.267 | 217 | 89 | 7 | 295 | 509 | 241 | 388 | 2.08e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42871.t1 | AT5G01710 | 62.984 | 516 | 172 | 6 | 10 | 509 | 1 | 513 | 0.0 | 657 |
| MS.gene42871.t1 | AT3G53400 | 25.000 | 424 | 248 | 11 | 94 | 509 | 103 | 464 | 1.33e-28 | 119 |
| MS.gene42871.t1 | AT5G03190 | 23.753 | 421 | 255 | 12 | 94 | 509 | 90 | 449 | 5.04e-28 | 117 |
| MS.gene42871.t1 | AT5G03190 | 24.038 | 416 | 250 | 12 | 99 | 509 | 119 | 473 | 5.45e-28 | 117 |
| MS.gene42871.t1 | AT1G24480 | 39.259 | 135 | 75 | 3 | 90 | 222 | 75 | 204 | 1.78e-18 | 85.1 |
| MS.gene42871.t1 | AT4G24805 | 38.776 | 147 | 80 | 3 | 90 | 228 | 90 | 234 | 3.16e-18 | 84.7 |
| MS.gene42871.t1 | AT2G16030 | 32.479 | 117 | 74 | 2 | 79 | 195 | 72 | 183 | 1.30e-11 | 65.1 |
Find 125 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACTATACGTATCTTTA+CGG | 0.252227 | 7.2:-32947884 | None:intergenic |
| GTGAAATTGCATTTGTTAGA+AGG | 0.270362 | 7.2:+32947942 | MS.gene42871:CDS |
| AAAACAGTTTCATGTATATA+AGG | 0.288284 | 7.2:-32947981 | None:intergenic |
| GGGGAGCATGTTGAGGTTAA+AGG | 0.290336 | 7.2:+32948437 | MS.gene42871:CDS |
| CTCCTTATGAAAATGCTTAT+CGG | 0.309551 | 7.2:-32948327 | None:intergenic |
| ATAGCGAGACTGATTGTTTC+CGG | 0.310156 | 7.2:-32947465 | None:intergenic |
| CTAGTATAGGTTCTTGGTTT+AGG | 0.310622 | 7.2:+32948255 | MS.gene42871:CDS |
| CTTTGTGTTGAAACCGTTAC+CGG | 0.321088 | 7.2:+32947621 | MS.gene42871:CDS |
| TTCTCCGGTGAAGGCTCGTT+CGG | 0.323955 | 7.2:+32947777 | MS.gene42871:CDS |
| GAATGGAAATTGTCATGTTC+CGG | 0.324054 | 7.2:+32948058 | MS.gene42871:CDS |
| ATGGTTCTAGTATAGGTTCT+TGG | 0.339618 | 7.2:+32948249 | MS.gene42871:CDS |
| TTTCTGCTTCTTCTCGTTGC+CGG | 0.347913 | 7.2:+32947446 | MS.gene42871:CDS |
| TATAAAGTATCTTTCTTCAA+TGG | 0.364263 | 7.2:+32948172 | MS.gene42871:CDS |
| TGGGGAGGTGGAGAAGATAA+AGG | 0.364576 | 7.2:+32948511 | MS.gene42871:CDS |
| AAAAGGAACCATTGAAGCCT+TGG | 0.374178 | 7.2:+32948123 | MS.gene42871:CDS |
| GGTGAAGCCGCTGGTGAAAT+CGG | 0.380890 | 7.2:+32947707 | MS.gene42871:CDS |
| TTCTTGAATGTCATTACAAT+AGG | 0.383434 | 7.2:+32948675 | MS.gene42871:CDS |
| ATTCCGAGGTTGTTTGAAAC+CGG | 0.383752 | 7.2:+32948626 | MS.gene42871:CDS |
| GTAACCGTATCAGAAGATTC+TGG | 0.392916 | 7.2:-32947344 | None:intergenic |
| AATGTAATCCAAGGCTTCAA+TGG | 0.393903 | 7.2:-32948131 | None:intergenic |
| GTGGAATTCTTGTTCATCAA+TGG | 0.398427 | 7.2:+32948786 | MS.gene42871:CDS |
| TCTCCGGTGAAGGCTCGTTC+GGG | 0.404734 | 7.2:+32947778 | MS.gene42871:CDS |
| GGCGAAGCCGGCGGTGTTTG+CGG | 0.405581 | 7.2:+32947806 | MS.gene42871:CDS |
| AATGGAAATTGTCATGTTCC+GGG | 0.408668 | 7.2:+32948059 | MS.gene42871:CDS |
| GGGGAGGTGGAGAAGATAAA+GGG | 0.408840 | 7.2:+32948512 | MS.gene42871:CDS |
| TGCTGAGCCATTGATTGAAA+AGG | 0.415041 | 7.2:+32948106 | MS.gene42871:CDS |
| ACCGGAGATTGGTTCATAAC+CGG | 0.425335 | 7.2:-32947490 | None:intergenic |
| TCCGGGGTACAAGAAAGATT+TGG | 0.425639 | 7.2:+32948076 | MS.gene42871:CDS |
| GAAGGGGTTTGATGGGGAGG+TGG | 0.427047 | 7.2:+32948499 | MS.gene42871:CDS |
| ATCTCCGGTGAATCATCTTC+CGG | 0.434189 | 7.2:+32947504 | MS.gene42871:CDS |
| CAACGAGAAGAAGCAGAAAT+CGG | 0.436584 | 7.2:-32947442 | None:intergenic |
| GAAGATGATTCACCGGAGAT+TGG | 0.441369 | 7.2:-32947501 | None:intergenic |
| CGTCGGAATCGCGAGGAAAT+CGG | 0.444998 | 7.2:+32947686 | MS.gene42871:CDS |
| TCGATAGGGAAGGGGTTTGA+TGG | 0.450774 | 7.2:+32948491 | MS.gene42871:CDS |
| AGCCTTGGATTACATTGAAA+AGG | 0.451168 | 7.2:+32948138 | MS.gene42871:CDS |
| GTTCGGGAAGTCGGCGAAGC+CGG | 0.452260 | 7.2:+32947794 | MS.gene42871:CDS |
| TGAAATGTCTTATTCTGCTT+AGG | 0.453644 | 7.2:-32948287 | None:intergenic |
| TTCAATTCTCTTAGACAAAG+TGG | 0.459178 | 7.2:+32948767 | MS.gene42871:CDS |
| TGAAATTGCATTTGTTAGAA+GGG | 0.459636 | 7.2:+32947943 | MS.gene42871:CDS |
| AGGGAAGGGGTTTGATGGGG+AGG | 0.463946 | 7.2:+32948496 | MS.gene42871:CDS |
| AGAAGCTATGGTTCTAGTAT+AGG | 0.468833 | 7.2:+32948242 | MS.gene42871:CDS |
| GTTTGAGATTCATCGTGATC+CGG | 0.474286 | 7.2:+32948415 | MS.gene42871:CDS |
| TTCTTCACCCACGCAGCATA+AGG | 0.474734 | 7.2:-32948380 | None:intergenic |
| TTTCGCTGCGGCGTGTTCCA+TGG | 0.476147 | 7.2:-32947310 | None:intergenic |
| AAATACGTCATCGCCGGCCG+TGG | 0.479239 | 7.2:+32947533 | MS.gene42871:CDS |
| CTTTCCAGAATCTTCTGATA+CGG | 0.483053 | 7.2:+32947340 | MS.gene42871:CDS |
| AGGTATTTATATGTTGATGT+TGG | 0.484995 | 7.2:+32948215 | MS.gene42871:CDS |
| GTGAAGCCGCTGGTGAAATC+GGG | 0.486074 | 7.2:+32947708 | MS.gene42871:CDS |
| AGGAGTATGGGTTGAAGAAA+GGG | 0.486235 | 7.2:+32948345 | MS.gene42871:CDS |
| AAGGAGTATGGGTTGAAGAA+AGG | 0.486257 | 7.2:+32948344 | MS.gene42871:CDS |
| GATAGGGAAGGGGTTTGATG+GGG | 0.487355 | 7.2:+32948493 | MS.gene42871:CDS |
| AGTGGTGAACGGATTCCGTT+TGG | 0.488237 | 7.2:+32947732 | MS.gene42871:CDS |
| ATTCAACCTTTGCGGTCGAT+AGG | 0.494435 | 7.2:+32948476 | MS.gene42871:CDS |
| GATTATTATTCGAATTCGAA+TGG | 0.495620 | 7.2:+32948041 | MS.gene42871:CDS |
| ACCAAATCTTTCTTGTACCC+CGG | 0.497525 | 7.2:-32948077 | None:intergenic |
| TTCCGAGGTTGTTTGAAACC+GGG | 0.501018 | 7.2:+32948627 | MS.gene42871:CDS |
| ATTGCAAGACTCGCCGGCGA+TGG | 0.501779 | 7.2:-32947415 | None:intergenic |
| TTTGAGATTCATCGTGATCC+GGG | 0.502701 | 7.2:+32948416 | MS.gene42871:CDS |
| TGTTTGCGGCGGAGATTGCT+CGG | 0.504065 | 7.2:+32947820 | MS.gene42871:CDS |
| AGAGATGTTGTCCTGGGCAG+AGG | 0.507298 | 7.2:+32948702 | MS.gene42871:CDS |
| CTTCCCGAACGAGCCTTCAC+CGG | 0.515338 | 7.2:-32947781 | None:intergenic |
| TGAAGGCTCGTTCGGGAAGT+CGG | 0.515472 | 7.2:+32947785 | MS.gene42871:CDS |
| TTTCGTGACTTGATCGGCGG+AGG | 0.515739 | 7.2:+32947573 | MS.gene42871:CDS |
| CGATGACGTATTTGCGCCGC+CGG | 0.520322 | 7.2:-32947523 | None:intergenic |
| CGATAGGGAAGGGGTTTGAT+GGG | 0.520667 | 7.2:+32948492 | MS.gene42871:CDS |
| TTGAATGTCATTACAATAGG+TGG | 0.524370 | 7.2:+32948678 | MS.gene42871:CDS |
| GATGAAACACGGTGGATTCG+CGG | 0.524712 | 7.2:+32947845 | MS.gene42871:CDS |
| AGAAGATTCTGGAAAGAGCT+AGG | 0.524979 | 7.2:-32947333 | None:intergenic |
| ACAATCAGTCTCGCTATCTC+CGG | 0.525437 | 7.2:+32947471 | MS.gene42871:CDS |
| ATCTCCGCCGCAAACACCGC+CGG | 0.530458 | 7.2:-32947813 | None:intergenic |
| ACCTTTGCGGTCGATAGGGA+AGG | 0.531001 | 7.2:+32948481 | MS.gene42871:CDS |
| TGTTGTGATGAAAATGGATG+TGG | 0.532373 | 7.2:+32948583 | MS.gene42871:CDS |
| TTCAACCTTTGCGGTCGATA+GGG | 0.534099 | 7.2:+32948477 | MS.gene42871:CDS |
| TGGGTAGGATTCAACCTTTG+CGG | 0.534681 | 7.2:+32948468 | MS.gene42871:CDS |
| CATGTTGAGGTTAAAGGAAG+GGG | 0.537032 | 7.2:+32948443 | MS.gene42871:CDS |
| TCCGGTTATGAACCAATCTC+CGG | 0.538640 | 7.2:+32947489 | MS.gene42871:CDS |
| GAAGAGTAGAAAGCCACGGC+CGG | 0.538717 | 7.2:-32947546 | None:intergenic |
| GGCGACATTGCAAGACTCGC+CGG | 0.544591 | 7.2:-32947421 | None:intergenic |
| TCAAACTCACCGTCACCAAA+CGG | 0.547214 | 7.2:-32947747 | None:intergenic |
| GAAAACTTATGATCAATGCT+TGG | 0.549157 | 7.2:+32948739 | MS.gene42871:CDS |
| CCGCTGGTGAAATCGGGAAG+TGG | 0.549982 | 7.2:+32947714 | MS.gene42871:CDS |
| GAGGAAATCGGTGAAGCCGC+TGG | 0.550077 | 7.2:+32947698 | MS.gene42871:CDS |
| TTAACCTCAACATGCTCCCC+CGG | 0.551682 | 7.2:-32948434 | None:intergenic |
| AGGTGGCAGAGATGTTGTCC+TGG | 0.557939 | 7.2:+32948695 | MS.gene42871:CDS |
| AGCATGTTGAGGTTAAAGGA+AGG | 0.559095 | 7.2:+32948441 | MS.gene42871:CDS |
| GAAGTGCACGGTGGCTACCA+TGG | 0.559135 | 7.2:+32947293 | MS.gene42871:CDS |
| CTTTGCGGTCGATAGGGAAG+GGG | 0.559268 | 7.2:+32948483 | MS.gene42871:CDS |
| CCTTTGCGGTCGATAGGGAA+GGG | 0.563419 | 7.2:+32948482 | MS.gene42871:CDS |
| CATTGGTTCCTTATGCTGCG+TGG | 0.566216 | 7.2:+32948372 | MS.gene42871:CDS |
| TACTTCAAACTCCTCTGCCC+AGG | 0.569130 | 7.2:-32948713 | None:intergenic |
| GATGTTGGAGCTAGAAGCTA+TGG | 0.569584 | 7.2:+32948230 | MS.gene42871:CDS |
| TTGAGATTCATCGTGATCCG+GGG | 0.576008 | 7.2:+32948417 | MS.gene42871:CDS |
| CGATTTCCTCGCGATTCCGA+CGG | 0.577452 | 7.2:-32947685 | None:intergenic |
| CCACTTCCCGATTTCACCAG+CGG | 0.577504 | 7.2:-32947714 | None:intergenic |
| CGGCGCAAATACGTCATCGC+CGG | 0.577591 | 7.2:+32947527 | MS.gene42871:CDS |
| CTGATACGGTTACTTCTCAC+CGG | 0.578963 | 7.2:+32947354 | MS.gene42871:CDS |
| GCTTACGTCATCTCCATCGC+CGG | 0.584015 | 7.2:+32947402 | MS.gene42871:CDS |
| ATTGGTTCCTTATGCTGCGT+GGG | 0.585654 | 7.2:+32948373 | MS.gene42871:CDS |
| ATCTATCAAACAAATCGCCC+CGG | 0.587345 | 7.2:-32948645 | None:intergenic |
| CGGGAAGTCGGCGAAGCCGG+CGG | 0.589704 | 7.2:+32947797 | MS.gene42871:CDS |
| TCCGAGGTTGTTTGAAACCG+GGG | 0.593021 | 7.2:+32948628 | MS.gene42871:CDS |
| GCCGCCGGAAGATGATTCAC+CGG | 0.594188 | 7.2:-32947508 | None:intergenic |
| GAACGGATTCCGTTTGGTGA+CGG | 0.594862 | 7.2:+32947738 | MS.gene42871:CDS |
| GCATGTTGAGGTTAAAGGAA+GGG | 0.598675 | 7.2:+32948442 | MS.gene42871:CDS |
| CTGAGTTTGATCTTATTCCG+AGG | 0.598709 | 7.2:+32948612 | MS.gene42871:CDS |
| GTTGAAGAAAGGGCTGACAT+TGG | 0.602547 | 7.2:+32948355 | MS.gene42871:CDS |
| GAAGCCGGCGGTGTTTGCGG+CGG | 0.603669 | 7.2:+32947809 | MS.gene42871:CDS |
| GGTGGCAGAGATGTTGTCCT+GGG | 0.606062 | 7.2:+32948696 | MS.gene42871:CDS |
| ATGTTGAGGTTAAAGGAAGG+GGG | 0.624038 | 7.2:+32948444 | MS.gene42871:CDS |
| AACAGAAGAGTAGAAAGCCA+CGG | 0.629536 | 7.2:-32947550 | None:intergenic |
| CCCTTCCCTATCGACCGCAA+AGG | 0.632938 | 7.2:-32948482 | None:intergenic |
| TGAAATCGGGAAGTGGTGAA+CGG | 0.636425 | 7.2:+32947721 | MS.gene42871:CDS |
| GGGAGGTGGAGAAGATAAAG+GGG | 0.645245 | 7.2:+32948513 | MS.gene42871:CDS |
| TCCGGTGAATCATCTTCCGG+CGG | 0.645312 | 7.2:+32947507 | MS.gene42871:CDS |
| TGAGATTCATCGTGATCCGG+GGG | 0.648064 | 7.2:+32948418 | MS.gene42871:CDS |
| GCCCCGGTTTCAAACAACCT+CGG | 0.653850 | 7.2:-32948629 | None:intergenic |
| ATGGAAATTGTCATGTTCCG+GGG | 0.657278 | 7.2:+32948060 | MS.gene42871:CDS |
| TGTGATGAAAATGGATGTGG+AGG | 0.658771 | 7.2:+32948586 | MS.gene42871:CDS |
| AAAACTCCGTCGGAATCGCG+AGG | 0.663538 | 7.2:+32947679 | MS.gene42871:CDS |
| ATTGCTCGGACGATGAAACA+CGG | 0.696867 | 7.2:+32947834 | MS.gene42871:CDS |
| AACAGCAATGACGAAAACGC+CGG | 0.715270 | 7.2:-32947373 | None:intergenic |
| CGGCGGAGGTTACTTGACGA+CGG | 0.733582 | 7.2:+32947587 | MS.gene42871:CDS |
| GTGATGAAAATGGATGTGGA+GGG | 0.753325 | 7.2:+32948587 | MS.gene42871:CDS |
| GCTCGGACGATGAAACACGG+TGG | 0.794839 | 7.2:+32947837 | MS.gene42871:CDS |
| GAAAGAGCTAGGTTTCGCTG+CGG | 0.796736 | 7.2:-32947322 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATATAAGTTTTAAGAAT+AGG | + | chr7.2:32948195-32948214 | MS.gene42871:CDS | 15.0% |
| !! | AAAACAGTTTCATGTATATA+AGG | - | chr7.2:32947984-32948003 | None:intergenic | 20.0% |
| !!! | TATAAAGTATCTTTCTTCAA+TGG | + | chr7.2:32948172-32948191 | MS.gene42871:CDS | 20.0% |
| ! | AGGTATTTATATGTTGATGT+TGG | + | chr7.2:32948215-32948234 | MS.gene42871:CDS | 25.0% |
| ! | GATTATTATTCGAATTCGAA+TGG | + | chr7.2:32948041-32948060 | MS.gene42871:CDS | 25.0% |
| ! | TGAAACTATACGTATCTTTA+CGG | - | chr7.2:32947887-32947906 | None:intergenic | 25.0% |
| ! | TTCTTGAATGTCATTACAAT+AGG | + | chr7.2:32948675-32948694 | MS.gene42871:CDS | 25.0% |
| !! | TGAAATTGCATTTGTTAGAA+GGG | + | chr7.2:32947943-32947962 | MS.gene42871:CDS | 25.0% |
| !!! | TGATTTTGTTGTGATGAAAA+TGG | + | chr7.2:32948577-32948596 | MS.gene42871:CDS | 25.0% |
| CTCCTTATGAAAATGCTTAT+CGG | - | chr7.2:32948330-32948349 | None:intergenic | 30.0% | |
| GAAAACTTATGATCAATGCT+TGG | + | chr7.2:32948739-32948758 | MS.gene42871:CDS | 30.0% | |
| TTCAATTCTCTTAGACAAAG+TGG | + | chr7.2:32948767-32948786 | MS.gene42871:CDS | 30.0% | |
| TTGAATGTCATTACAATAGG+TGG | + | chr7.2:32948678-32948697 | MS.gene42871:CDS | 30.0% | |
| ! | AAGCATTTTCATAAGGAGTA+TGG | + | chr7.2:32948332-32948351 | MS.gene42871:CDS | 30.0% |
| ! | AATGGTTCCTTTTCAATCAA+TGG | - | chr7.2:32948116-32948135 | None:intergenic | 30.0% |
| ! | GTGAAATTGCATTTGTTAGA+AGG | + | chr7.2:32947942-32947961 | MS.gene42871:CDS | 30.0% |
| ! | TGAAATGTCTTATTCTGCTT+AGG | - | chr7.2:32948290-32948309 | None:intergenic | 30.0% |
| ! | TTCCTTTTCAATGTAATCCA+AGG | - | chr7.2:32948143-32948162 | None:intergenic | 30.0% |
| !! | AGCATTTTCATAAGGAGTAT+GGG | + | chr7.2:32948333-32948352 | MS.gene42871:CDS | 30.0% |
| !! | GAGTTTGATTTTGTATTCTC+CGG | + | chr7.2:32947762-32947781 | MS.gene42871:CDS | 30.0% |
| AATGGAAATTGTCATGTTCC+GGG | + | chr7.2:32948059-32948078 | MS.gene42871:CDS | 35.0% | |
| AATGTAATCCAAGGCTTCAA+TGG | - | chr7.2:32948134-32948153 | None:intergenic | 35.0% | |
| AGCCTTGGATTACATTGAAA+AGG | + | chr7.2:32948138-32948157 | MS.gene42871:CDS | 35.0% | |
| CTAGTATAGGTTCTTGGTTT+AGG | + | chr7.2:32948255-32948274 | MS.gene42871:CDS | 35.0% | |
| CTTTCCAGAATCTTCTGATA+CGG | + | chr7.2:32947340-32947359 | MS.gene42871:CDS | 35.0% | |
| GAATGGAAATTGTCATGTTC+CGG | + | chr7.2:32948058-32948077 | MS.gene42871:CDS | 35.0% | |
| GTGGAATTCTTGTTCATCAA+TGG | + | chr7.2:32948786-32948805 | MS.gene42871:CDS | 35.0% | |
| TGTTGTGATGAAAATGGATG+TGG | + | chr7.2:32948583-32948602 | MS.gene42871:CDS | 35.0% | |
| ! | AGCCGATAAGCATTTTCATA+AGG | + | chr7.2:32948325-32948344 | MS.gene42871:CDS | 35.0% |
| !! | AGAAGCTATGGTTCTAGTAT+AGG | + | chr7.2:32948242-32948261 | MS.gene42871:CDS | 35.0% |
| !! | ATGGTTCTAGTATAGGTTCT+TGG | + | chr7.2:32948249-32948268 | MS.gene42871:CDS | 35.0% |
| !! | TCTGTTTTTCGTGACTTGAT+CGG | + | chr7.2:32947567-32947586 | MS.gene42871:CDS | 35.0% |
| !!! | GTTTTTGCTCTGAGAGAAAT+CGG | + | chr7.2:32947651-32947670 | MS.gene42871:CDS | 35.0% |
| AAAAACATCACGTCCGGTAA+CGG | - | chr7.2:32947637-32947656 | None:intergenic | 40.0% | |
| AAAAGGAACCATTGAAGCCT+TGG | + | chr7.2:32948123-32948142 | MS.gene42871:CDS | 40.0% | |
| AACAGAAGAGTAGAAAGCCA+CGG | - | chr7.2:32947553-32947572 | None:intergenic | 40.0% | |
| ACCAAATCTTTCTTGTACCC+CGG | - | chr7.2:32948080-32948099 | None:intergenic | 40.0% | |
| AGCATGTTGAGGTTAAAGGA+AGG | + | chr7.2:32948441-32948460 | MS.gene42871:CDS | 40.0% | |
| ATAGCGAGACTGATTGTTTC+CGG | - | chr7.2:32947468-32947487 | None:intergenic | 40.0% | |
| ATCGGAGTAAAAAACTCCGT+CGG | + | chr7.2:32947669-32947688 | MS.gene42871:CDS | 40.0% | |
| ATCTATCAAACAAATCGCCC+CGG | - | chr7.2:32948648-32948667 | None:intergenic | 40.0% | |
| ATGGAAATTGTCATGTTCCG+GGG | + | chr7.2:32948060-32948079 | MS.gene42871:CDS | 40.0% | |
| ATGTTGAGGTTAAAGGAAGG+GGG | + | chr7.2:32948444-32948463 | MS.gene42871:CDS | 40.0% | |
| CAACGAGAAGAAGCAGAAAT+CGG | - | chr7.2:32947445-32947464 | None:intergenic | 40.0% | |
| CATGTTGAGGTTAAAGGAAG+GGG | + | chr7.2:32948443-32948462 | MS.gene42871:CDS | 40.0% | |
| CTGAGTTTGATCTTATTCCG+AGG | + | chr7.2:32948612-32948631 | MS.gene42871:CDS | 40.0% | |
| CTTTGTGTTGAAACCGTTAC+CGG | + | chr7.2:32947621-32947640 | MS.gene42871:CDS | 40.0% | |
| GCATGTTGAGGTTAAAGGAA+GGG | + | chr7.2:32948442-32948461 | MS.gene42871:CDS | 40.0% | |
| GTAACCGTATCAGAAGATTC+TGG | - | chr7.2:32947347-32947366 | None:intergenic | 40.0% | |
| GTGATGAAAATGGATGTGGA+GGG | + | chr7.2:32948587-32948606 | MS.gene42871:CDS | 40.0% | |
| TGTGATGAAAATGGATGTGG+AGG | + | chr7.2:32948586-32948605 | MS.gene42871:CDS | 40.0% | |
| ! | AAGGAGTATGGGTTGAAGAA+AGG | + | chr7.2:32948344-32948363 | MS.gene42871:CDS | 40.0% |
| ! | AGAAGATTCTGGAAAGAGCT+AGG | - | chr7.2:32947336-32947355 | None:intergenic | 40.0% |
| ! | AGGAGTATGGGTTGAAGAAA+GGG | + | chr7.2:32948345-32948364 | MS.gene42871:CDS | 40.0% |
| ! | ATTCCGAGGTTGTTTGAAAC+CGG | + | chr7.2:32948626-32948645 | MS.gene42871:CDS | 40.0% |
| ! | GATTTTGTATTCTCCGGTGA+AGG | + | chr7.2:32947768-32947787 | MS.gene42871:CDS | 40.0% |
| ! | GTTTGAGATTCATCGTGATC+CGG | + | chr7.2:32948415-32948434 | MS.gene42871:CDS | 40.0% |
| ! | TGCTGAGCCATTGATTGAAA+AGG | + | chr7.2:32948106-32948125 | MS.gene42871:CDS | 40.0% |
| ! | TTTGAGATTCATCGTGATCC+GGG | + | chr7.2:32948416-32948435 | MS.gene42871:CDS | 40.0% |
| !! | AGGGGTTTGATTTTGCGAAT+TGG | + | chr7.2:32948531-32948550 | MS.gene42871:CDS | 40.0% |
| AACAGCAATGACGAAAACGC+CGG | - | chr7.2:32947376-32947395 | None:intergenic | 45.0% | |
| ACAATCAGTCTCGCTATCTC+CGG | + | chr7.2:32947471-32947490 | MS.gene42871:CDS | 45.0% | |
| ATCTCCGGTGAATCATCTTC+CGG | + | chr7.2:32947504-32947523 | MS.gene42871:CDS | 45.0% | |
| ATTCAACCTTTGCGGTCGAT+AGG | + | chr7.2:32948476-32948495 | MS.gene42871:CDS | 45.0% | |
| ATTGCTCGGACGATGAAACA+CGG | + | chr7.2:32947834-32947853 | MS.gene42871:CDS | 45.0% | |
| CAGAGCAAAAACATCACGTC+CGG | - | chr7.2:32947643-32947662 | None:intergenic | 45.0% | |
| CTGATACGGTTACTTCTCAC+CGG | + | chr7.2:32947354-32947373 | MS.gene42871:CDS | 45.0% | |
| GAAGATGATTCACCGGAGAT+TGG | - | chr7.2:32947504-32947523 | None:intergenic | 45.0% | |
| GATGTTGGAGCTAGAAGCTA+TGG | + | chr7.2:32948230-32948249 | MS.gene42871:CDS | 45.0% | |
| GTTGAAGAAAGGGCTGACAT+TGG | + | chr7.2:32948355-32948374 | MS.gene42871:CDS | 45.0% | |
| TCAAACTCACCGTCACCAAA+CGG | - | chr7.2:32947750-32947769 | None:intergenic | 45.0% | |
| TCCGGGGTACAAGAAAGATT+TGG | + | chr7.2:32948076-32948095 | MS.gene42871:CDS | 45.0% | |
| TCCGGTTATGAACCAATCTC+CGG | + | chr7.2:32947489-32947508 | MS.gene42871:CDS | 45.0% | |
| TGAAATCGGGAAGTGGTGAA+CGG | + | chr7.2:32947721-32947740 | MS.gene42871:CDS | 45.0% | |
| TGGGTAGGATTCAACCTTTG+CGG | + | chr7.2:32948468-32948487 | MS.gene42871:CDS | 45.0% | |
| TTCAACCTTTGCGGTCGATA+GGG | + | chr7.2:32948477-32948496 | MS.gene42871:CDS | 45.0% | |
| TTGAGATTCATCGTGATCCG+GGG | + | chr7.2:32948417-32948436 | MS.gene42871:CDS | 45.0% | |
| TTTCTGCTTCTTCTCGTTGC+CGG | + | chr7.2:32947446-32947465 | MS.gene42871:CDS | 45.0% | |
| ! | ACCGGAGATTGGTTCATAAC+CGG | - | chr7.2:32947493-32947512 | None:intergenic | 45.0% |
| ! | ATTGGTTCCTTATGCTGCGT+GGG | + | chr7.2:32948373-32948392 | MS.gene42871:CDS | 45.0% |
| ! | GTTTTTCGTGACTTGATCGG+CGG | + | chr7.2:32947570-32947589 | MS.gene42871:CDS | 45.0% |
| ! | TTCCGAGGTTGTTTGAAACC+GGG | + | chr7.2:32948627-32948646 | MS.gene42871:CDS | 45.0% |
| CGATAGGGAAGGGGTTTGAT+GGG | + | chr7.2:32948492-32948511 | MS.gene42871:CDS | 50.0% | |
| GAAAGAGCTAGGTTTCGCTG+CGG | - | chr7.2:32947325-32947344 | None:intergenic | 50.0% | |
| GAGGTTAAAGGAAGGGGGAT+GGG | + | chr7.2:32948449-32948468 | MS.gene42871:CDS | 50.0% | |
| GATAGGGAAGGGGTTTGATG+GGG | + | chr7.2:32948493-32948512 | MS.gene42871:CDS | 50.0% | |
| GGGAGGTGGAGAAGATAAAG+GGG | + | chr7.2:32948513-32948532 | MS.gene42871:CDS | 50.0% | |
| GGGGAGGTGGAGAAGATAAA+GGG | + | chr7.2:32948512-32948531 | MS.gene42871:CDS | 50.0% | |
| TACTTCAAACTCCTCTGCCC+AGG | - | chr7.2:32948716-32948735 | None:intergenic | 50.0% | |
| TCGATAGGGAAGGGGTTTGA+TGG | + | chr7.2:32948491-32948510 | MS.gene42871:CDS | 50.0% | |
| TGAGATTCATCGTGATCCGG+GGG | + | chr7.2:32948418-32948437 | MS.gene42871:CDS | 50.0% | |
| TGAGGTTAAAGGAAGGGGGA+TGG | + | chr7.2:32948448-32948467 | MS.gene42871:CDS | 50.0% | |
| TGGGGAGGTGGAGAAGATAA+AGG | + | chr7.2:32948511-32948530 | MS.gene42871:CDS | 50.0% | |
| TTAAAGGAAGGGGGATGGGT+AGG | + | chr7.2:32948453-32948472 | MS.gene42871:CDS | 50.0% | |
| TTAACCTCAACATGCTCCCC+CGG | - | chr7.2:32948437-32948456 | None:intergenic | 50.0% | |
| TTCTTCACCCACGCAGCATA+AGG | - | chr7.2:32948383-32948402 | None:intergenic | 50.0% | |
| ! | AGTGGTGAACGGATTCCGTT+TGG | + | chr7.2:32947732-32947751 | MS.gene42871:CDS | 50.0% |
| ! | GAACGGATTCCGTTTGGTGA+CGG | + | chr7.2:32947738-32947757 | MS.gene42871:CDS | 50.0% |
| ! | GATGAAACACGGTGGATTCG+CGG | + | chr7.2:32947845-32947864 | MS.gene42871:CDS | 50.0% |
| ! | GGGGAGCATGTTGAGGTTAA+AGG | + | chr7.2:32948437-32948456 | MS.gene42871:CDS | 50.0% |
| ! | TCCGAGGTTGTTTGAAACCG+GGG | + | chr7.2:32948628-32948647 | MS.gene42871:CDS | 50.0% |
| !! | CATTGGTTCCTTATGCTGCG+TGG | + | chr7.2:32948372-32948391 | MS.gene42871:CDS | 50.0% |
| AAAACTCCGTCGGAATCGCG+AGG | + | chr7.2:32947679-32947698 | MS.gene42871:CDS | 55.0% | |
| ACCTTTGCGGTCGATAGGGA+AGG | + | chr7.2:32948481-32948500 | MS.gene42871:CDS | 55.0% | |
| AGAGATGTTGTCCTGGGCAG+AGG | + | chr7.2:32948702-32948721 | MS.gene42871:CDS | 55.0% | |
| AGGTGGCAGAGATGTTGTCC+TGG | + | chr7.2:32948695-32948714 | MS.gene42871:CDS | 55.0% | |
| CCACTTCCCGATTTCACCAG+CGG | - | chr7.2:32947717-32947736 | None:intergenic | 55.0% | |
| CCTTTGCGGTCGATAGGGAA+GGG | + | chr7.2:32948482-32948501 | MS.gene42871:CDS | 55.0% | |
| CGATTTCCTCGCGATTCCGA+CGG | - | chr7.2:32947688-32947707 | None:intergenic | 55.0% | |
| CGTCGGAATCGCGAGGAAAT+CGG | + | chr7.2:32947686-32947705 | MS.gene42871:CDS | 55.0% | |
| CTTTGCGGTCGATAGGGAAG+GGG | + | chr7.2:32948483-32948502 | MS.gene42871:CDS | 55.0% | |
| GAAGAGTAGAAAGCCACGGC+CGG | - | chr7.2:32947549-32947568 | None:intergenic | 55.0% | |
| GCCCCGGTTTCAAACAACCT+CGG | - | chr7.2:32948632-32948651 | None:intergenic | 55.0% | |
| GCTTACGTCATCTCCATCGC+CGG | + | chr7.2:32947402-32947421 | MS.gene42871:CDS | 55.0% | |
| GGTGAAGCCGCTGGTGAAAT+CGG | + | chr7.2:32947707-32947726 | MS.gene42871:CDS | 55.0% | |
| GGTGGCAGAGATGTTGTCCT+GGG | + | chr7.2:32948696-32948715 | MS.gene42871:CDS | 55.0% | |
| GTGAAGCCGCTGGTGAAATC+GGG | + | chr7.2:32947708-32947727 | MS.gene42871:CDS | 55.0% | |
| TCCGGTGAATCATCTTCCGG+CGG | + | chr7.2:32947507-32947526 | MS.gene42871:CDS | 55.0% | |
| TGAAGGCTCGTTCGGGAAGT+CGG | + | chr7.2:32947785-32947804 | MS.gene42871:CDS | 55.0% | |
| TGTTTGCGGCGGAGATTGCT+CGG | + | chr7.2:32947820-32947839 | MS.gene42871:CDS | 55.0% | |
| TTCTCCGGTGAAGGCTCGTT+CGG | + | chr7.2:32947777-32947796 | MS.gene42871:CDS | 55.0% | |
| TTTCGTGACTTGATCGGCGG+AGG | + | chr7.2:32947573-32947592 | MS.gene42871:CDS | 55.0% | |
| AAATACGTCATCGCCGGCCG+TGG | + | chr7.2:32947533-32947552 | MS.gene42871:CDS | 60.0% | |
| AGGGAAGGGGTTTGATGGGG+AGG | + | chr7.2:32948496-32948515 | MS.gene42871:CDS | 60.0% | |
| ATTGCAAGACTCGCCGGCGA+TGG | - | chr7.2:32947418-32947437 | None:intergenic | 60.0% | |
| CCCTTCCCTATCGACCGCAA+AGG | - | chr7.2:32948485-32948504 | None:intergenic | 60.0% | |
| CCGCTGGTGAAATCGGGAAG+TGG | + | chr7.2:32947714-32947733 | MS.gene42871:CDS | 60.0% | |
| CGATGACGTATTTGCGCCGC+CGG | - | chr7.2:32947526-32947545 | None:intergenic | 60.0% | |
| CGGCGCAAATACGTCATCGC+CGG | + | chr7.2:32947527-32947546 | MS.gene42871:CDS | 60.0% | |
| CGGCGGAGGTTACTTGACGA+CGG | + | chr7.2:32947587-32947606 | MS.gene42871:CDS | 60.0% | |
| CTTCCCGAACGAGCCTTCAC+CGG | - | chr7.2:32947784-32947803 | None:intergenic | 60.0% | |
| GAAGGGGTTTGATGGGGAGG+TGG | + | chr7.2:32948499-32948518 | MS.gene42871:CDS | 60.0% | |
| GAAGTGCACGGTGGCTACCA+TGG | + | chr7.2:32947293-32947312 | MS.gene42871:CDS | 60.0% | |
| GAGGAAATCGGTGAAGCCGC+TGG | + | chr7.2:32947698-32947717 | MS.gene42871:CDS | 60.0% | |
| GCCGCCGGAAGATGATTCAC+CGG | - | chr7.2:32947511-32947530 | None:intergenic | 60.0% | |
| GCTCGGACGATGAAACACGG+TGG | + | chr7.2:32947837-32947856 | MS.gene42871:CDS | 60.0% | |
| GGCGACATTGCAAGACTCGC+CGG | - | chr7.2:32947424-32947443 | None:intergenic | 60.0% | |
| TCTCCGGTGAAGGCTCGTTC+GGG | + | chr7.2:32947778-32947797 | MS.gene42871:CDS | 60.0% | |
| TTTCGCTGCGGCGTGTTCCA+TGG | - | chr7.2:32947313-32947332 | None:intergenic | 60.0% | |
| ! | TGATCCGGGGGAGCATGTTG+AGG | + | chr7.2:32948430-32948449 | MS.gene42871:CDS | 60.0% |
| ATCTCCGCCGCAAACACCGC+CGG | - | chr7.2:32947816-32947835 | None:intergenic | 65.0% | |
| GTTCGGGAAGTCGGCGAAGC+CGG | + | chr7.2:32947794-32947813 | MS.gene42871:CDS | 65.0% | |
| GAAGCCGGCGGTGTTTGCGG+CGG | + | chr7.2:32947809-32947828 | MS.gene42871:CDS | 70.0% | |
| GGCGAAGCCGGCGGTGTTTG+CGG | + | chr7.2:32947806-32947825 | MS.gene42871:CDS | 70.0% | |
| CGGGAAGTCGGCGAAGCCGG+CGG | + | chr7.2:32947797-32947816 | MS.gene42871:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 32947285 | 32948814 | 32947285 | ID=MS.gene42871 |
| chr7.2 | mRNA | 32947285 | 32948814 | 32947285 | ID=MS.gene42871.t1;Parent=MS.gene42871 |
| chr7.2 | exon | 32947285 | 32948814 | 32947285 | ID=MS.gene42871.t1.exon1;Parent=MS.gene42871.t1 |
| chr7.2 | CDS | 32947285 | 32948814 | 32947285 | ID=cds.MS.gene42871.t1;Parent=MS.gene42871.t1 |
| Gene Sequence |
| Protein sequence |
