Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43087.t1 | KEH38942.1 | 83.9 | 285 | 33 | 4 | 1 | 278 | 1 | 279 | 8.20E-57 | 230.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43087.t1 | Q8LJS2 | 59.4 | 298 | 98 | 4 | 1 | 278 | 1 | 295 | 1.1e-41 | 171.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43087.t1 | A0A072VB01 | 83.9 | 285 | 33 | 4 | 1 | 278 | 1 | 279 | 5.9e-57 | 230.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43087.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049441 | MS.gene43087 | 0.820843 | 5.54E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene43087 | 0.800319 | 1.52E-48 | -1.69E-46 |
| MS.gene051234 | MS.gene43087 | 0.806565 | 7.73E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene43087 | 0.814798 | 1.28E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene43087 | 0.829356 | 5.39E-55 | -1.69E-46 |
| MS.gene054142 | MS.gene43087 | 0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene055555 | MS.gene43087 | 0.822739 | 2.02E-53 | -1.69E-46 |
| MS.gene056075 | MS.gene43087 | 0.843476 | 1.37E-58 | -1.69E-46 |
| MS.gene05689 | MS.gene43087 | 0.807037 | 6.15E-50 | -1.69E-46 |
| MS.gene056998 | MS.gene43087 | 0.815939 | 7.15E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene43087 | 0.825231 | 5.25E-54 | -1.69E-46 |
| MS.gene057684 | MS.gene43087 | -0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene43087 | 0.807453 | 5.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43087.t1 | MTR_2g084815 | 81.046 | 306 | 26 | 5 | 1 | 278 | 1 | 302 | 1.46e-146 | 413 |
| MS.gene43087.t1 | MTR_2g084815 | 85.017 | 287 | 26 | 5 | 1 | 278 | 1 | 279 | 8.13e-146 | 410 |
| MS.gene43087.t1 | MTR_2g084815 | 79.352 | 247 | 19 | 5 | 1 | 219 | 1 | 243 | 1.89e-100 | 294 |
| MS.gene43087.t1 | MTR_2g084815 | 77.523 | 218 | 17 | 5 | 1 | 190 | 1 | 214 | 3.41e-79 | 239 |
| MS.gene43087.t1 | MTR_4g055440 | 47.773 | 247 | 116 | 5 | 1 | 244 | 5 | 241 | 5.63e-55 | 179 |
| MS.gene43087.t1 | MTR_8g069135 | 80.952 | 105 | 13 | 3 | 118 | 220 | 23 | 122 | 4.00e-35 | 129 |
| MS.gene43087.t1 | MTR_4g055450 | 39.801 | 201 | 90 | 4 | 2 | 186 | 6 | 191 | 2.84e-27 | 108 |
| MS.gene43087.t1 | MTR_4g055450 | 53.125 | 96 | 34 | 4 | 183 | 275 | 270 | 357 | 2.55e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43087.t1 | AT5G03740 | 40.984 | 305 | 139 | 10 | 1 | 277 | 1 | 292 | 2.03e-45 | 155 |
| MS.gene43087.t1 | AT5G22650 | 40.753 | 292 | 136 | 9 | 1 | 263 | 1 | 284 | 1.30e-35 | 129 |
| MS.gene43087.t1 | AT5G22650 | 40.614 | 293 | 136 | 10 | 1 | 263 | 1 | 285 | 6.71e-34 | 125 |
| MS.gene43087.t1 | AT3G44750 | 51.087 | 92 | 42 | 2 | 1 | 92 | 1 | 89 | 2.48e-23 | 95.9 |
| MS.gene43087.t1 | AT3G44750 | 51.087 | 92 | 42 | 2 | 1 | 92 | 1 | 89 | 2.64e-23 | 95.9 |
| MS.gene43087.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.11e-15 | 72.4 |
| MS.gene43087.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.56e-15 | 71.6 |
| MS.gene43087.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 3.67e-15 | 72.8 |
Find 57 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTTCCAATGGAGTTT+TGG | 0.108547 | 2.4:-14416154 | None:intergenic |
| TCCTCCAGACTTGGGAGTTT+TGG | 0.188316 | 2.4:+14413418 | None:intergenic |
| GGAGTCTTTCCACCTTTCTT+AGG | 0.193593 | 2.4:+14413452 | None:intergenic |
| GAAACTTTCTCCTCTGCTTT+TGG | 0.244330 | 2.4:+14414810 | None:intergenic |
| GAAAGTTTCTGAACCTAAAA+AGG | 0.272635 | 2.4:-14414796 | MS.gene43087:CDS |
| GATGAATCTGATGATGAAAA+TGG | 0.302701 | 2.4:-14414687 | MS.gene43087:CDS |
| TGGGGAACAAAAGCTTGTTT+TGG | 0.309523 | 2.4:-14415620 | MS.gene43087:CDS |
| TTTGATTTCTTGGTAGAAAC+TGG | 0.315658 | 2.4:+14414172 | None:intergenic |
| CATTGGGCCTCTTCTTTCCC+TGG | 0.324129 | 2.4:+14414212 | None:intergenic |
| TCTTCATCTTCCTCATCCTT+TGG | 0.331069 | 2.4:+14414726 | None:intergenic |
| TGAATTAGGTGCTGAGGTTA+AGG | 0.360277 | 2.4:-14415857 | MS.gene43087:intron |
| TTTAGCAGGTGCAGCATTCT+TGG | 0.365068 | 2.4:+14414767 | None:intergenic |
| AGGACATTCAACTCTGAAAC+TGG | 0.374828 | 2.4:-14413260 | MS.gene43087:CDS |
| TGGTTATTTACCTCAAAGTT+GGG | 0.376973 | 2.4:-14415639 | MS.gene43087:CDS |
| TTCTGCTCTGTGTTAATCAA+TGG | 0.388646 | 2.4:+14414938 | None:intergenic |
| GCAGCTGCTTCAAGGTCATA+TGG | 0.394188 | 2.4:+14415811 | None:intergenic |
| GAGTCTTTCCACCTTTCTTA+GGG | 0.394889 | 2.4:+14413453 | None:intergenic |
| GAAATGAACACTAGCAGCTT+TGG | 0.398995 | 2.4:+14415519 | None:intergenic |
| TGTGAATAGCAGCTGCTTCA+AGG | 0.402299 | 2.4:+14415803 | None:intergenic |
| TAAATAACCACAGGCTCGTT+TGG | 0.405456 | 2.4:+14415652 | None:intergenic |
| GTGGTTATTTACCTCAAAGT+TGG | 0.423882 | 2.4:-14415640 | MS.gene43087:CDS |
| GATGCCAAAACTCCCAAGTC+TGG | 0.432291 | 2.4:-14413422 | MS.gene43087:CDS |
| AGCTGCTATTCACATTTCTC+AGG | 0.433247 | 2.4:-14415794 | MS.gene43087:intron |
| TTGGTCTCACCAGTCTTCTC+AGG | 0.439494 | 2.4:+14414139 | None:intergenic |
| TCTTGATATTGTCCTTGAAA+AGG | 0.456315 | 2.4:-14415563 | MS.gene43087:CDS |
| TTGTTAGATGGTAAGAAAGC+TGG | 0.456417 | 2.4:-14413494 | MS.gene43087:intron |
| TTAGGTGCTGAGGTTAAGGT+TGG | 0.459431 | 2.4:-14415853 | MS.gene43087:intron |
| AGAGAGTCCTCCTCCAGACT+TGG | 0.471298 | 2.4:+14413409 | None:intergenic |
| TTTCCACCTTTCTTAGGGTG+AGG | 0.472414 | 2.4:+14413458 | None:intergenic |
| ACTTCACTTAGCAGCATGCT+TGG | 0.492494 | 2.4:+14413217 | None:intergenic |
| TCTGCTCTGTGTTAATCAAT+GGG | 0.495154 | 2.4:+14414939 | None:intergenic |
| ACAACCTTCACGTGTTTAGC+AGG | 0.509884 | 2.4:+14414753 | None:intergenic |
| GGAAGAGACTCCTGTGAAGA+AGG | 0.527324 | 2.4:-14414329 | MS.gene43087:intron |
| TGTGCCATTACCTTCTTCAC+AGG | 0.535491 | 2.4:+14414319 | None:intergenic |
| CAGCTGCTTCAAGGTCATAT+GGG | 0.543766 | 2.4:+14415812 | None:intergenic |
| TGAGAGTGATGAGGATGATG+AGG | 0.559141 | 2.4:-14414350 | MS.gene43087:CDS |
| GAGAGTCCTCCTCCAGACTT+GGG | 0.565423 | 2.4:+14413410 | None:intergenic |
| AATGCTACTCCTGAGAAGAC+TGG | 0.569825 | 2.4:-14414148 | MS.gene43087:intron |
| GCAACTCCTCACCCTAAGAA+AGG | 0.575686 | 2.4:-14413464 | MS.gene43087:CDS |
| GGTTGTTGATCCAAAGGATG+AGG | 0.576616 | 2.4:-14414736 | MS.gene43087:CDS |
| GAGTTACCCCAAAACTCCAT+TGG | 0.578782 | 2.4:+14416146 | None:intergenic |
| CGTGAAGGTTGTTGATCCAA+AGG | 0.578956 | 2.4:-14414742 | MS.gene43087:CDS |
| GTTATTGTATAGGTTGCACT+TGG | 0.583377 | 2.4:-14415694 | MS.gene43087:intron |
| AAAACTCCCAAGTCTGGAGG+AGG | 0.583660 | 2.4:-14413416 | MS.gene43087:CDS |
| TTGATTAACACAGAGCAGAA+TGG | 0.601793 | 2.4:-14414935 | MS.gene43087:intron |
| GGTTATTTACCTCAAAGTTG+GGG | 0.606552 | 2.4:-14415638 | MS.gene43087:CDS |
| AAAACCAGAACCAAAAGCAG+AGG | 0.625041 | 2.4:-14414820 | MS.gene43087:CDS |
| TGGACTGCAACAACATAGCA+AGG | 0.629185 | 2.4:-14413240 | MS.gene43087:CDS |
| ACTCCTCACCCTAAGAAAGG+TGG | 0.633029 | 2.4:-14413461 | MS.gene43087:CDS |
| AAATGGAAGCTCTGATGATG+AGG | 0.649458 | 2.4:-14414670 | MS.gene43087:intron |
| TGCACCTGCTAAACACGTGA+AGG | 0.650932 | 2.4:-14414757 | MS.gene43087:CDS |
| GCCAAAACTCCCAAGTCTGG+AGG | 0.652249 | 2.4:-14413419 | MS.gene43087:CDS |
| ACTTTGAGGTAAATAACCAC+AGG | 0.655718 | 2.4:+14415643 | None:intergenic |
| AGACAAACCAAACGAGCCTG+TGG | 0.660313 | 2.4:-14415659 | MS.gene43087:CDS |
| ACAATATCAAGAGAAATCTG+AGG | 0.664546 | 2.4:+14415574 | None:intergenic |
| AGATGATGATGAGAGTGATG+AGG | 0.674103 | 2.4:-14414359 | MS.gene43087:CDS |
| AGGTTGACCAGGGAAAGAAG+AGG | 0.740019 | 2.4:-14414219 | MS.gene43087:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTATTACTTTTAGA+TGG | - | chr2.4:14416019-14416038 | MS.gene43087:intron | 10.0% |
| !!! | ATTTTGTGATAAATATATAT+TGG | - | chr2.4:14415257-14415276 | MS.gene43087:intron | 10.0% |
| !!! | TAATAGTTTACATTTTATAT+TGG | - | chr2.4:14414219-14414238 | MS.gene43087:CDS | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | - | chr2.4:14416020-14416039 | MS.gene43087:intron | 10.0% |
| !! | AAAGGATATATATCTATATA+TGG | + | chr2.4:14415818-14415837 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | + | chr2.4:14416015-14416034 | None:intergenic | 15.0% |
| !! | AACTATATAATAACAAATCA+AGG | + | chr2.4:14413906-14413925 | None:intergenic | 15.0% |
| !! | TATAATTATTATGGTTACTA+CGG | - | chr2.4:14415092-14415111 | MS.gene43087:intron | 15.0% |
| !! | TTAAATTGTGTTAGATATTA+AGG | - | chr2.4:14415691-14415710 | MS.gene43087:intron | 15.0% |
| !!! | TTTTAGATGATATTTTTCTA+AGG | - | chr2.4:14413935-14413954 | MS.gene43087:intron | 15.0% |
| !! | AAAAATTTAAACGCGAATTA+AGG | + | chr2.4:14415851-14415870 | None:intergenic | 20.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | + | chr2.4:14416014-14416033 | None:intergenic | 20.0% |
| !! | CAAACAATGTTTCAATTTAA+GGG | + | chr2.4:14415742-14415761 | None:intergenic | 20.0% |
| !! | TCAAACAATGTTTCAATTTA+AGG | + | chr2.4:14415743-14415762 | None:intergenic | 20.0% |
| !! | TCACAAAATATATTACAACT+TGG | + | chr2.4:14415246-14415265 | None:intergenic | 20.0% |
| !!! | AAATAACCATTGTTCTTTTT+AGG | - | chr2.4:14414520-14414539 | MS.gene43087:intron | 20.0% |
| !!! | TTAATCAATGTTTTGTTTAG+TGG | - | chr2.4:14414719-14414738 | MS.gene43087:CDS | 20.0% |
| !!! | TTTATGTTGATAATTGTAGA+TGG | - | chr2.4:14414965-14414984 | MS.gene43087:intron | 20.0% |
| ! | ACAATTTAACAACAGTTAAC+TGG | + | chr2.4:14415423-14415442 | None:intergenic | 25.0% |
| ! | ATCAAAAATCAAGAGTAGTT+CGG | + | chr2.4:14413362-14413381 | None:intergenic | 25.0% |
| ! | ATTTAGATAACAGATCTGTA+AGG | + | chr2.4:14414184-14414203 | None:intergenic | 25.0% |
| ! | TATTTCGTGTTCTCAATTTA+GGG | - | chr2.4:14414869-14414888 | MS.gene43087:intron | 25.0% |
| ! | TTATTTCGTGTTCTCAATTT+AGG | - | chr2.4:14414868-14414887 | MS.gene43087:intron | 25.0% |
| ! | TTGTAGGTTTACTAAATTTC+TGG | - | chr2.4:14413643-14413662 | MS.gene43087:intron | 25.0% |
| ! | TTTCAACATTGTGTATGTAT+TGG | + | chr2.4:14414815-14414834 | None:intergenic | 25.0% |
| !! | ACATTTGTTAAATGTGCTAT+TGG | - | chr2.4:14414841-14414860 | MS.gene43087:intron | 25.0% |
| !! | CATTTGTTAAATGTGCTATT+GGG | - | chr2.4:14414842-14414861 | MS.gene43087:intron | 25.0% |
| !! | GCGTTTAAATTTTTGTTAGA+TGG | - | chr2.4:14415857-14415876 | MS.gene43087:intron | 25.0% |
| !!! | AGTAGCATTTTTTGATTTCT+TGG | + | chr2.4:14415204-14415223 | None:intergenic | 25.0% |
| !!! | ATAATCGTCTTTTTGTTTGA+AGG | - | chr2.4:14415124-14415143 | MS.gene43087:intron | 25.0% |
| !!! | CTGATTTTTTTTTGTTGGTT+GGG | - | chr2.4:14414469-14414488 | MS.gene43087:intron | 25.0% |
| !!! | TATACGTTGGTTTTTGAATT+AGG | - | chr2.4:14413492-14413511 | MS.gene43087:intron | 25.0% |
| !!! | TCTGATTTTTTTTTGTTGGT+TGG | - | chr2.4:14414468-14414487 | MS.gene43087:intron | 25.0% |
| !!! | TTGGTCTGATTTTTTTTTGT+TGG | - | chr2.4:14414464-14414483 | MS.gene43087:intron | 25.0% |
| !!! | TTGTCATGCAATTGTTTTTA+AGG | - | chr2.4:14414324-14414343 | MS.gene43087:intron | 25.0% |
| !!! | TTTCTGGTTTGTTATTGTAT+AGG | - | chr2.4:14413659-14413678 | MS.gene43087:intron | 25.0% |
| AACTTGTATTCACGTGTATT+AGG | - | chr2.4:14413448-14413467 | MS.gene43087:CDS | 30.0% | |
| AATGTTTCAATTTAAGGGTG+GGG | + | chr2.4:14415737-14415756 | None:intergenic | 30.0% | |
| AATTAAGGATGTGCAACAAA+AGG | + | chr2.4:14415836-14415855 | None:intergenic | 30.0% | |
| AATTGCATGACAAATTTCAG+AGG | + | chr2.4:14414317-14414336 | None:intergenic | 30.0% | |
| ACAATATCAAGAGAAATCTG+AGG | + | chr2.4:14413792-14413811 | None:intergenic | 30.0% | |
| ACAATGTTTCAATTTAAGGG+TGG | + | chr2.4:14415739-14415758 | None:intergenic | 30.0% | |
| ACTTGTATTCACGTGTATTA+GGG | - | chr2.4:14413449-14413468 | MS.gene43087:CDS | 30.0% | |
| AGGTTAGATTAAGATTGTGT+TGG | - | chr2.4:14414344-14414363 | MS.gene43087:CDS | 30.0% | |
| ATGATGTCAATATACACGTT+AGG | + | chr2.4:14414053-14414072 | None:intergenic | 30.0% | |
| ATTGCATGACAAATTTCAGA+GGG | + | chr2.4:14414316-14414335 | None:intergenic | 30.0% | |
| CAAAAAAAAATCAGACCAAG+AGG | + | chr2.4:14414463-14414482 | None:intergenic | 30.0% | |
| CAATGTTTCAATTTAAGGGT+GGG | + | chr2.4:14415738-14415757 | None:intergenic | 30.0% | |
| CCAAAACACATCAATAGTTA+AGG | + | chr2.4:14414261-14414280 | None:intergenic | 30.0% | |
| GAAAGTTTCTGAACCTAAAA+AGG | - | chr2.4:14414567-14414586 | MS.gene43087:intron | 30.0% | |
| GATGACAAATAGACTAATCT+GGG | + | chr2.4:14414012-14414031 | None:intergenic | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | - | chr2.4:14413575-14413594 | MS.gene43087:intron | 30.0% | |
| TCTTGATATTGTCCTTGAAA+AGG | - | chr2.4:14413800-14413819 | MS.gene43087:intron | 30.0% | |
| TGGTTATTTACCTCAAAGTT+GGG | - | chr2.4:14413724-14413743 | MS.gene43087:intron | 30.0% | |
| ! | CATAGTTTTCTGATATACGT+TGG | - | chr2.4:14413479-14413498 | MS.gene43087:CDS | 30.0% |
| ! | CCTTAACTATTGATGTGTTT+TGG | - | chr2.4:14414258-14414277 | MS.gene43087:intron | 30.0% |
| ! | GATGAATCTGATGATGAAAA+TGG | - | chr2.4:14414676-14414695 | MS.gene43087:CDS | 30.0% |
| ! | GGTTTTCCTAAAAAGAACAA+TGG | + | chr2.4:14414529-14414548 | None:intergenic | 30.0% |
| ! | TAGTTCTTGCATTTTGTTGA+TGG | - | chr2.4:14415340-14415359 | MS.gene43087:intron | 30.0% |
| ! | TTTGATTTCTTGGTAGAAAC+TGG | + | chr2.4:14415194-14415213 | None:intergenic | 30.0% |
| !! | GGTTGTGATTGATTTTTAGA+TGG | - | chr2.4:14416041-14416060 | MS.gene43087:intron | 30.0% |
| !! | GTTCTATGTTGTGTTTTTGT+AGG | - | chr2.4:14413627-14413646 | MS.gene43087:intron | 30.0% |
| !! | TATAAGTTGTCCATTTTTGC+TGG | - | chr2.4:14414750-14414769 | MS.gene43087:CDS | 30.0% |
| !! | TTGTTGATTCTGTGTTAGAT+CGG | - | chr2.4:14415299-14415318 | MS.gene43087:intron | 30.0% |
| !! | TTTTTGTTGTCTTCATTACC+AGG | - | chr2.4:14416083-14416102 | MS.gene43087:intron | 30.0% |
| !!! | AGTTTTTGAAGCAGATTCAT+TGG | + | chr2.4:14415171-14415190 | None:intergenic | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+GGG | + | chr2.4:14415170-14415189 | None:intergenic | 30.0% |
| AATAAATGTTGACCTCAGAC+AGG | + | chr2.4:14414939-14414958 | None:intergenic | 35.0% | |
| AATGCAAGAACTAGTGCAAA+TGG | + | chr2.4:14415333-14415352 | None:intergenic | 35.0% | |
| ACATGCATAATCAAGACTGA+AGG | + | chr2.4:14414785-14414804 | None:intergenic | 35.0% | |
| CTATTCACATTTCTCAGGTT+AGG | - | chr2.4:14413574-14413593 | MS.gene43087:intron | 35.0% | |
| GAAGAAAGGTAGACAATGAA+CGG | + | chr2.4:14413251-14413270 | None:intergenic | 35.0% | |
| GACATCATTACCAGCAAAAA+TGG | + | chr2.4:14414763-14414782 | None:intergenic | 35.0% | |
| GGATGACAAATAGACTAATC+TGG | + | chr2.4:14414013-14414032 | None:intergenic | 35.0% | |
| GGTTATTTACCTCAAAGTTG+GGG | - | chr2.4:14413725-14413744 | MS.gene43087:intron | 35.0% | |
| GTCAATGCTGAAATTGTAGT+TGG | - | chr2.4:14415464-14415483 | MS.gene43087:intron | 35.0% | |
| GTGGTTATTTACCTCAAAGT+TGG | - | chr2.4:14413723-14413742 | MS.gene43087:intron | 35.0% | |
| GTTATTGTATAGGTTGCACT+TGG | - | chr2.4:14413669-14413688 | MS.gene43087:intron | 35.0% | |
| TAGGCTATTATTGCAACACT+AGG | + | chr2.4:14414034-14414053 | None:intergenic | 35.0% | |
| TATTCACGTGTATTAGGGTT+TGG | - | chr2.4:14413454-14413473 | MS.gene43087:CDS | 35.0% | |
| TCTGCTCTGTGTTAATCAAT+GGG | + | chr2.4:14414427-14414446 | None:intergenic | 35.0% | |
| TTCTGCTCTGTGTTAATCAA+TGG | + | chr2.4:14414428-14414447 | None:intergenic | 35.0% | |
| TTGATTAACACAGAGCAGAA+TGG | - | chr2.4:14414428-14414447 | MS.gene43087:intron | 35.0% | |
| TTGTTAGATGGTAAGAAAGC+TGG | - | chr2.4:14415869-14415888 | MS.gene43087:intron | 35.0% | |
| ! | AGGAATTTTGTCCCTGTTTA+GGG | + | chr2.4:14413772-14413791 | None:intergenic | 35.0% |
| ! | ATAGCTCAAACTCCTTTTCA+AGG | + | chr2.4:14413815-14413834 | None:intergenic | 35.0% |
| !! | AATGTAGCTTGTTTGCATCA+AGG | - | chr2.4:14415600-14415619 | MS.gene43087:CDS | 35.0% |
| !! | ACTTTGAGGTAAATAACCAC+AGG | + | chr2.4:14413723-14413742 | None:intergenic | 35.0% |
| !! | ATTGTAGTTGGTTTGCATCA+TGG | - | chr2.4:14415476-14415495 | MS.gene43087:intron | 35.0% |
| !! | GTTTAGTTTGTTGCTATCCT+AGG | - | chr2.4:14414156-14414175 | MS.gene43087:CDS | 35.0% |
| !! | TGCATTTTGTTGATGGATCA+TGG | - | chr2.4:14415347-14415366 | MS.gene43087:intron | 35.0% |
| !! | TTTTGTTTGAAGGTTGACCA+GGG | - | chr2.4:14415134-14415153 | MS.gene43087:intron | 35.0% |
| !! | TTTTTGTTTGAAGGTTGACC+AGG | - | chr2.4:14415133-14415152 | MS.gene43087:intron | 35.0% |
| AAAACCAGAACCAAAAGCAG+AGG | - | chr2.4:14414543-14414562 | MS.gene43087:intron | 40.0% | |
| AACACAGAGCAGAATGGTAT+GGG | - | chr2.4:14414434-14414453 | MS.gene43087:intron | 40.0% | |
| AGCTGCTATTCACATTTCTC+AGG | - | chr2.4:14413569-14413588 | MS.gene43087:intron | 40.0% | |
| AGTTTCAGAGTTGAATGTCC+TGG | + | chr2.4:14416104-14416123 | None:intergenic | 40.0% | |
| CATCGTTATTCAGCGAAGAA+AGG | + | chr2.4:14413265-14413284 | None:intergenic | 40.0% | |
| GAAATGAACACTAGCAGCTT+TGG | + | chr2.4:14413847-14413866 | None:intergenic | 40.0% | |
| GAGTCTTTCCACCTTTCTTA+GGG | + | chr2.4:14415913-14415932 | None:intergenic | 40.0% | |
| GTCAGACATGCTGAAATTTG+AGG | - | chr2.4:14415772-14415791 | MS.gene43087:intron | 40.0% | |
| GTCTTGATTATGCATGTCTG+AGG | - | chr2.4:14414788-14414807 | MS.gene43087:CDS | 40.0% | |
| TAAATAACCACAGGCTCGTT+TGG | + | chr2.4:14413714-14413733 | None:intergenic | 40.0% | |
| TAACACAGAGCAGAATGGTA+TGG | - | chr2.4:14414433-14414452 | MS.gene43087:intron | 40.0% | |
| TCTTCATCTTCCTCATCCTT+TGG | + | chr2.4:14414640-14414659 | None:intergenic | 40.0% | |
| ! | AAATGGAAGCTCTGATGATG+AGG | - | chr2.4:14414693-14414712 | MS.gene43087:CDS | 40.0% |
| ! | AGATGATGATGAGAGTGATG+AGG | - | chr2.4:14415004-14415023 | MS.gene43087:intron | 40.0% |
| ! | GAAACTTTCTCCTCTGCTTT+TGG | + | chr2.4:14414556-14414575 | None:intergenic | 40.0% |
| ! | GAGGAATTTTGTCCCTGTTT+AGG | + | chr2.4:14413773-14413792 | None:intergenic | 40.0% |
| ! | TTCTTGGCATCAGCCTTTTT+AGG | + | chr2.4:14414583-14414602 | None:intergenic | 40.0% |
| !! | AGGACATTCAACTCTGAAAC+TGG | - | chr2.4:14416103-14416122 | MS.gene43087:intron | 40.0% |
| !! | GGGGAACAAAAGCTTGTTTT+GGG | - | chr2.4:14413744-14413763 | MS.gene43087:intron | 40.0% |
| !! | GGTTTTTGAATTAGGTGCTG+AGG | - | chr2.4:14413500-14413519 | MS.gene43087:intron | 40.0% |
| !! | TGAATTAGGTGCTGAGGTTA+AGG | - | chr2.4:14413506-14413525 | MS.gene43087:intron | 40.0% |
| !! | TGGGGAACAAAAGCTTGTTT+TGG | - | chr2.4:14413743-14413762 | MS.gene43087:intron | 40.0% |
| !!! | TGTTTTGGGAACCCTAAACA+GGG | - | chr2.4:14413758-14413777 | MS.gene43087:intron | 40.0% |
| !!! | TTGTTTTGGGAACCCTAAAC+AGG | - | chr2.4:14413757-14413776 | MS.gene43087:intron | 40.0% |
| AATGCTACTCCTGAGAAGAC+TGG | - | chr2.4:14415215-14415234 | MS.gene43087:intron | 45.0% | |
| ACAACCTTCACGTGTTTAGC+AGG | + | chr2.4:14414613-14414632 | None:intergenic | 45.0% | |
| CAGCTGCTTCAAGGTCATAT+GGG | + | chr2.4:14413554-14413573 | None:intergenic | 45.0% | |
| CGTGAAGGTTGTTGATCCAA+AGG | - | chr2.4:14414621-14414640 | MS.gene43087:intron | 45.0% | |
| GAATGGTATGGGTTTCCTCT+TGG | - | chr2.4:14414445-14414464 | MS.gene43087:intron | 45.0% | |
| GACTCCTGTGAAGAAGGTAA+TGG | - | chr2.4:14415040-14415059 | MS.gene43087:intron | 45.0% | |
| GCTGCTAGTGTTCATTTCTG+TGG | - | chr2.4:14413849-14413868 | MS.gene43087:intron | 45.0% | |
| GGAGTCTTTCCACCTTTCTT+AGG | + | chr2.4:14415914-14415933 | None:intergenic | 45.0% | |
| GGTTGTTGATCCAAAGGATG+AGG | - | chr2.4:14414627-14414646 | MS.gene43087:intron | 45.0% | |
| TGAGAGTGATGAGGATGATG+AGG | - | chr2.4:14415013-14415032 | MS.gene43087:intron | 45.0% | |
| TGGACTGCAACAACATAGCA+AGG | - | chr2.4:14416123-14416142 | MS.gene43087:intron | 45.0% | |
| TGTGAATAGCAGCTGCTTCA+AGG | + | chr2.4:14413563-14413582 | None:intergenic | 45.0% | |
| TTTAGCAGGTGCAGCATTCT+TGG | + | chr2.4:14414599-14414618 | None:intergenic | 45.0% | |
| TTTCCACCTTTCTTAGGGTG+AGG | + | chr2.4:14415908-14415927 | None:intergenic | 45.0% | |
| ! | AACAGATCTGTAAGGCACCT+AGG | + | chr2.4:14414176-14414195 | None:intergenic | 45.0% |
| ! | GCTTTTGTTCCCCAACTTTG+AGG | + | chr2.4:14413737-14413756 | None:intergenic | 45.0% |
| ! | TGTGCCATTACCTTCTTCAC+AGG | + | chr2.4:14415047-14415066 | None:intergenic | 45.0% |
| !! | GGAGTTTTGGCATCACTGTT+AGG | + | chr2.4:14415935-14415954 | None:intergenic | 45.0% |
| !! | TTAGGTGCTGAGGTTAAGGT+TGG | - | chr2.4:14413510-14413529 | MS.gene43087:intron | 45.0% |
| !!! | TTCTCCTCTGCTTTTGGTTC+TGG | + | chr2.4:14414550-14414569 | None:intergenic | 45.0% |
| !!! | TTTATTTGTTATAATTATTA+TGG | - | chr2.4:14415083-14415102 | MS.gene43087:intron | 5.0% |
| AAAACTCCCAAGTCTGGAGG+AGG | - | chr2.4:14415947-14415966 | MS.gene43087:intron | 50.0% | |
| ACGAGTGAGGAAGGTGAAAC+TGG | - | chr2.4:14414286-14414305 | MS.gene43087:intron | 50.0% | |
| ACTCCTCACCCTAAGAAAGG+TGG | - | chr2.4:14415902-14415921 | MS.gene43087:intron | 50.0% | |
| AGACAAACCAAACGAGCCTG+TGG | - | chr2.4:14413704-14413723 | MS.gene43087:intron | 50.0% | |
| AGGTTGACCAGGGAAAGAAG+AGG | - | chr2.4:14415144-14415163 | MS.gene43087:intron | 50.0% | |
| GACCTCAGACAGGCATAAAG+AGG | + | chr2.4:14414929-14414948 | None:intergenic | 50.0% | |
| GATGCCAAAACTCCCAAGTC+TGG | - | chr2.4:14415941-14415960 | MS.gene43087:intron | 50.0% | |
| GCAACTCCTCACCCTAAGAA+AGG | - | chr2.4:14415899-14415918 | MS.gene43087:intron | 50.0% | |
| GCAGCTGCTTCAAGGTCATA+TGG | + | chr2.4:14413555-14413574 | None:intergenic | 50.0% | |
| GGAAGAGACTCCTGTGAAGA+AGG | - | chr2.4:14415034-14415053 | MS.gene43087:intron | 50.0% | |
| GTCCTCTTTATGCCTGTCTG+AGG | - | chr2.4:14414924-14414943 | MS.gene43087:intron | 50.0% | |
| TGCACCTGCTAAACACGTGA+AGG | - | chr2.4:14414606-14414625 | MS.gene43087:intron | 50.0% | |
| TTGGTCTCACCAGTCTTCTC+AGG | + | chr2.4:14415227-14415246 | None:intergenic | 50.0% | |
| ! | TCCTCCAGACTTGGGAGTTT+TGG | + | chr2.4:14415948-14415967 | None:intergenic | 50.0% |
| !!! | TGTTTTGGCTTGCACGAGTG+AGG | - | chr2.4:14414273-14414292 | MS.gene43087:intron | 50.0% |
| AGAGAGTCCTCCTCCAGACT+TGG | + | chr2.4:14415957-14415976 | None:intergenic | 55.0% | |
| CATTGGGCCTCTTCTTTCCC+TGG | + | chr2.4:14415154-14415173 | None:intergenic | 55.0% | |
| GAGAGTCCTCCTCCAGACTT+GGG | + | chr2.4:14415956-14415975 | None:intergenic | 55.0% | |
| GCCAAAACTCCCAAGTCTGG+AGG | - | chr2.4:14415944-14415963 | MS.gene43087:intron | 55.0% | |
| !! | TTGGCTTGCACGAGTGAGGA+AGG | - | chr2.4:14414277-14414296 | MS.gene43087:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 14413220 | 14416165 | 14413220 | ID=MS.gene43087 |
| chr2.4 | mRNA | 14413220 | 14416165 | 14413220 | ID=MS.gene43087.t1;Parent=MS.gene43087 |
| chr2.4 | exon | 14416153 | 14416165 | 14416153 | ID=MS.gene43087.t1.exon1;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14416153 | 14416165 | 14416153 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14415795 | 14415871 | 14415795 | ID=MS.gene43087.t1.exon2;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14415795 | 14415871 | 14415795 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14415518 | 14415704 | 14415518 | ID=MS.gene43087.t1.exon3;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14415518 | 14415704 | 14415518 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14414936 | 14414980 | 14414936 | ID=MS.gene43087.t1.exon4;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14414936 | 14414980 | 14414936 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14414671 | 14414843 | 14414671 | ID=MS.gene43087.t1.exon5;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14414671 | 14414843 | 14414671 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14414330 | 14414401 | 14414330 | ID=MS.gene43087.t1.exon6;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14414330 | 14414401 | 14414330 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14414149 | 14414239 | 14414149 | ID=MS.gene43087.t1.exon7;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14414149 | 14414239 | 14414149 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14413392 | 14413509 | 14413392 | ID=MS.gene43087.t1.exon8;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14413392 | 14413509 | 14413392 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| chr2.4 | exon | 14413220 | 14413280 | 14413220 | ID=MS.gene43087.t1.exon9;Parent=MS.gene43087.t1 |
| chr2.4 | CDS | 14413220 | 14413280 | 14413220 | ID=cds.MS.gene43087.t1;Parent=MS.gene43087.t1 |
| Gene Sequence |
| Protein sequence |
