Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43480.t1 | XP_013458716.1 | 97.2 | 706 | 20 | 0 | 1 | 706 | 1 | 706 | 0.00E+00 | 1206.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43480.t1 | Q9LTY1 | 60.2 | 726 | 267 | 6 | 1 | 705 | 1 | 725 | 5.3e-218 | 758.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43480.t1 | A0A072UUK2 | 97.2 | 706 | 20 | 0 | 1 | 706 | 1 | 706 | 0.0e+00 | 1206.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02013 | MS.gene43480 | PPI |
MS.gene43480 | MS.gene99360 | PPI |
MS.gene79126 | MS.gene43480 | PPI |
MS.gene43480 | MS.gene021252 | PPI |
MS.gene02806 | MS.gene43480 | PPI |
MS.gene02011 | MS.gene43480 | PPI |
MS.gene78111 | MS.gene43480 | PPI |
MS.gene067039 | MS.gene43480 | PPI |
MS.gene003211 | MS.gene43480 | PPI |
MS.gene045227 | MS.gene43480 | PPI |
MS.gene03802 | MS.gene43480 | PPI |
MS.gene66800 | MS.gene43480 | PPI |
MS.gene75567 | MS.gene43480 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43480.t1 | MTR_4g134640 | 97.167 | 706 | 20 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1393 |
MS.gene43480.t1 | MTR_4g134640 | 96.955 | 624 | 19 | 0 | 83 | 706 | 3 | 626 | 0.0 | 1212 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43480.t1 | AT5G49880 | 62.672 | 726 | 249 | 6 | 1 | 705 | 1 | 725 | 0.0 | 878 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCACTCTCAGCTCATTTA+AGG | 0.127080 | 8.4:-232563 | None:intergenic |
AGCTTCACCATTCTTCAAAT+TGG | 0.225489 | 8.4:-232359 | None:intergenic |
ATCAGGGAATACCAACATTT+TGG | 0.238178 | 8.4:+235126 | MS.gene43480:CDS |
TGCGAAGGTTTGTCTCATTT+TGG | 0.238880 | 8.4:-228913 | None:intergenic |
TTCTACAGGGAGTGATGTTT+TGG | 0.261658 | 8.4:+229447 | MS.gene43480:CDS |
CAGCACTTCTATGGTTTGTT+TGG | 0.266549 | 8.4:-233612 | None:intergenic |
TGATCATTCACAACTTAAAA+AGG | 0.271940 | 8.4:+229045 | MS.gene43480:CDS |
CTTGAATTTGAATATGAATC+AGG | 0.287905 | 8.4:+235109 | MS.gene43480:CDS |
TTGAACTGTTTAGGAGAAAC+TGG | 0.306116 | 8.4:+234298 | MS.gene43480:intron |
GGAAATTATGATTGAGTGTT+TGG | 0.313529 | 8.4:-228632 | None:intergenic |
TTCAGAGATATCATTATTAG+AGG | 0.326892 | 8.4:+232684 | MS.gene43480:CDS |
GACAAAGCAACATCTTTAGA+AGG | 0.333909 | 8.4:+228968 | MS.gene43480:CDS |
CTAAAGATGTTGCTTTGTCT+TGG | 0.341234 | 8.4:-228964 | None:intergenic |
GAAACAACTGGAGGTGGCTT+TGG | 0.341324 | 8.4:+231468 | MS.gene43480:CDS |
CATTGCAAACCTCTTTGAAT+TGG | 0.351624 | 8.4:-229262 | None:intergenic |
TCAATTAAACACTGAACTTC+AGG | 0.351637 | 8.4:+228883 | MS.gene43480:CDS |
GCTCAGATTGTGCCCTTTCC+CGG | 0.351664 | 8.4:-230746 | None:intergenic |
TCCCAGGAAGTTTCTTCTAC+AGG | 0.379616 | 8.4:+229433 | MS.gene43480:CDS |
TATTAAAATCAGAGATTAAA+CGG | 0.384162 | 8.4:+231557 | MS.gene43480:CDS |
AACTGCTCGCTTGAAACAAC+TGG | 0.389194 | 8.4:+231456 | MS.gene43480:CDS |
TAAAGATGTTGCTTTGTCTT+GGG | 0.400406 | 8.4:-228963 | None:intergenic |
TCCCTGTAGAAGAAACTTCC+TGG | 0.401242 | 8.4:-229435 | None:intergenic |
CTTTGAATTGGTCCTTAAGA+TGG | 0.406182 | 8.4:-229250 | None:intergenic |
GATTAAACGGATTGAATTAA+CGG | 0.416637 | 8.4:+231570 | MS.gene43480:CDS |
TCATCGGAACGTGGCCTCTT+CGG | 0.417235 | 8.4:-228352 | None:intergenic |
TGCTTTGTCTTGGGCGGAAG+CGG | 0.418194 | 8.4:-228954 | None:intergenic |
ATCCTTGCCAATTTGAAGAA+TGG | 0.420041 | 8.4:+232352 | MS.gene43480:CDS |
TTTGGTTAAACAATTGCAAC+AGG | 0.422570 | 8.4:+229465 | MS.gene43480:CDS |
AGAGCAACTGGACCATCTTA+AGG | 0.435575 | 8.4:+229238 | MS.gene43480:CDS |
GCTTTGGATGCTGCTGAGAT+TGG | 0.436789 | 8.4:+231484 | MS.gene43480:CDS |
GATGAACACCAGCGATCAAA+TGG | 0.439362 | 8.4:+235028 | MS.gene43480:CDS |
TGCGTCGCCGTCGCCGTCAT+CGG | 0.440741 | 8.4:-228368 | None:intergenic |
TGCAGCGTAAATCGTGTCAC+TGG | 0.446319 | 8.4:-235055 | None:intergenic |
TGCTGAAACTGAAGCTGTGC+TGG | 0.451059 | 8.4:+231516 | MS.gene43480:CDS |
TTGTTTGGCTTCATTATCTA+CGG | 0.458408 | 8.4:-233597 | None:intergenic |
GGATCCGGCGGCAGCGGTGG+AGG | 0.459538 | 8.4:+228408 | MS.gene43480:CDS |
GAAGAATTGAAGAGTCAATC+AGG | 0.460323 | 8.4:+233677 | MS.gene43480:CDS |
AGACCTGCTTAAAGAGCAAC+TGG | 0.463462 | 8.4:+229226 | MS.gene43480:CDS |
AAGTAGTGCTAATCCCATTC+AGG | 0.466808 | 8.4:+232393 | MS.gene43480:CDS |
GGAAAAGAGCCGCCGGGAAA+GGG | 0.468010 | 8.4:+230734 | MS.gene43480:CDS |
GAGGGAAATACAACCTGAAT+GGG | 0.468113 | 8.4:-232406 | None:intergenic |
CTGGGATTCCATTTGATCGC+TGG | 0.470960 | 8.4:-235036 | None:intergenic |
CAAGAACTCGCTGCTTCTAA+AGG | 0.472308 | 8.4:+228788 | MS.gene43480:CDS |
TCTTCGGTGGCGGAGGAGTA+CGG | 0.473231 | 8.4:-228336 | None:intergenic |
CGTGGCCTCTTCGGTGGCGG+AGG | 0.474010 | 8.4:-228343 | None:intergenic |
ACTCCAGGATCAACTCTTGA+AGG | 0.475492 | 8.4:+228823 | MS.gene43480:CDS |
AAGCAGGTCTGCTTCTCTCT+CGG | 0.477842 | 8.4:-229213 | None:intergenic |
GATTCTAGAAATAGAAAAGT+TGG | 0.479879 | 8.4:-229071 | None:intergenic |
CACTGGAGAGGGAGAGTGAC+CGG | 0.480225 | 8.4:+232656 | MS.gene43480:CDS |
TGTAAAGCTGCAAATTTAGC+AGG | 0.480888 | 8.4:-230879 | None:intergenic |
AGAGGGAAATACAACCTGAA+TGG | 0.481847 | 8.4:-232407 | None:intergenic |
CACATATCAGTGTCGCCAAA+TGG | 0.482171 | 8.4:+228453 | MS.gene43480:CDS |
CTATGAGGATCCGGCGGCAG+CGG | 0.485300 | 8.4:+228402 | MS.gene43480:CDS |
TCAGCCTGAGGTATCTCGTC+AGG | 0.487574 | 8.4:+235345 | MS.gene43480:CDS |
AAGAATAAAGTCACTGGAGA+GGG | 0.490630 | 8.4:+232645 | MS.gene43480:CDS |
TGCTTCTAAAGGCCGTGAAA+AGG | 0.491539 | 8.4:+228799 | MS.gene43480:CDS |
CCCAGGTTGAGATATTCGTT+CGG | 0.491573 | 8.4:+236465 | MS.gene43480:intron |
GGTTCCTCCACCGCTGCCGC+CGG | 0.494163 | 8.4:-228412 | None:intergenic |
ATCTGAGCTATCTAAACTAC+AGG | 0.495023 | 8.4:+230761 | MS.gene43480:CDS |
TGAGGATCCGGCGGCAGCGG+TGG | 0.495529 | 8.4:+228405 | MS.gene43480:CDS |
CACCATTCTTCAAATTGGCA+AGG | 0.499029 | 8.4:-232354 | None:intergenic |
GGTCCAGTTGCTCTTTAAGC+AGG | 0.500008 | 8.4:-229229 | None:intergenic |
AGGAAAAGAGCCGCCGGGAA+AGG | 0.500081 | 8.4:+230733 | MS.gene43480:CDS |
GTATCTTAATTTCCTCATGT+TGG | 0.507329 | 8.4:-232594 | None:intergenic |
CCCAGGAAGTTTCTTCTACA+GGG | 0.507888 | 8.4:+229434 | MS.gene43480:CDS |
GAACGTGGCCTCTTCGGTGG+CGG | 0.508356 | 8.4:-228346 | None:intergenic |
GATATCATTATTAGAGGCAA+AGG | 0.509270 | 8.4:+232690 | MS.gene43480:CDS |
GCTTGTTATCTATGAGGATC+CGG | 0.510386 | 8.4:+228393 | MS.gene43480:CDS |
AGGCCGTGAAAAGGCACTCC+AGG | 0.512926 | 8.4:+228808 | MS.gene43480:CDS |
TTCCTTCTACAGTTAGGTCA+TGG | 0.513722 | 8.4:+233524 | MS.gene43480:intron |
AAATCTCACAGCACGCCCTC+CGG | 0.515186 | 8.4:-234528 | None:intergenic |
TCAACATCTTACCAAAATGT+TGG | 0.516170 | 8.4:-235137 | None:intergenic |
TTGAATTTGAATATGAATCA+GGG | 0.517570 | 8.4:+235110 | MS.gene43480:CDS |
GAAAGACTCCACTGTTATGT+TGG | 0.523713 | 8.4:-236516 | None:intergenic |
TGCTGGAGGAAAAGAGCCGC+CGG | 0.524219 | 8.4:+230727 | MS.gene43480:CDS |
TTTAGGAGAAACTGGAAAGC+TGG | 0.527669 | 8.4:+234306 | MS.gene43480:intron |
TCTCTATGGTCTCTGAAAGA+TGG | 0.530121 | 8.4:-229000 | None:intergenic |
GGCGGAAGCGGCATGAGACT+CGG | 0.530624 | 8.4:-228942 | None:intergenic |
GTTATGTTGGCAGTAAAAGC+AGG | 0.531953 | 8.4:-236503 | None:intergenic |
GCTGGTGGAGAGCTACATAT+CGG | 0.532673 | 8.4:+234324 | MS.gene43480:CDS |
AGCAAGAAGAATAAAGTCAC+TGG | 0.533486 | 8.4:+232639 | MS.gene43480:CDS |
CGCACAGCTTGTTATCTATG+AGG | 0.533714 | 8.4:+228387 | MS.gene43480:CDS |
ACCTGGCATCTCATGTTTCG+AGG | 0.534847 | 8.4:+230851 | MS.gene43480:CDS |
CCTCCTTCAAGAGTTGATCC+TGG | 0.535275 | 8.4:-228826 | None:intergenic |
ATGATATCTCTGAACGGAGC+CGG | 0.537996 | 8.4:-232675 | None:intergenic |
ACATTGACAACTTACATTAG+CGG | 0.540144 | 8.4:-229095 | None:intergenic |
AAGAGGCCACGTTCCGATGA+CGG | 0.543240 | 8.4:+228355 | MS.gene43480:CDS |
TCCTCGAAACATGAGATGCC+AGG | 0.545495 | 8.4:-230852 | None:intergenic |
TGAAATTCTGTCTGCAAACA+CGG | 0.545580 | 8.4:-234500 | None:intergenic |
AATTTGAAGAATGGTGAAGC+TGG | 0.552951 | 8.4:+232361 | MS.gene43480:CDS |
TCGCTTGAAACAACTGGAGG+TGG | 0.553739 | 8.4:+231462 | MS.gene43480:CDS |
CTATATTTGGCAGATTGTGA+TGG | 0.562845 | 8.4:+235006 | MS.gene43480:intron |
CCCTGTAGAAGAAACTTCCT+GGG | 0.564281 | 8.4:-229434 | None:intergenic |
TAGAGGATCAAATATCATCA+TGG | 0.572164 | 8.4:+230808 | MS.gene43480:CDS |
ACATCTTTAGAAGGGAAGCT+AGG | 0.573337 | 8.4:+228977 | MS.gene43480:CDS |
TCGGAACGTGGCCTCTTCGG+TGG | 0.574434 | 8.4:-228349 | None:intergenic |
CTTACCTGACGAGATACCTC+AGG | 0.581003 | 8.4:-235349 | None:intergenic |
GTGCATAGCATGTGCTCGGA+GGG | 0.581042 | 8.4:-228433 | None:intergenic |
GTACTCCTCCGCCACCGAAG+AGG | 0.584759 | 8.4:+228338 | MS.gene43480:CDS |
ACAAAGCAACATCTTTAGAA+GGG | 0.593342 | 8.4:+228969 | MS.gene43480:CDS |
AATTTACAGTACACAGAAGG+AGG | 0.597563 | 8.4:+231426 | MS.gene43480:CDS |
TCTTAAGGACCAATTCAAAG+AGG | 0.599055 | 8.4:+229253 | MS.gene43480:CDS |
GGTAATTTACAGTACACAGA+AGG | 0.606067 | 8.4:+231423 | MS.gene43480:CDS |
CCGTCGCCGTCATCGGAACG+TGG | 0.606794 | 8.4:-228361 | None:intergenic |
CACCTTAAATGAGCTGAGAG+TGG | 0.608157 | 8.4:+232561 | MS.gene43480:CDS |
GCAGCGTAAATCGTGTCACT+GGG | 0.613627 | 8.4:-235054 | None:intergenic |
GAGACTCGGCTTGTATGCGA+AGG | 0.619176 | 8.4:-228928 | None:intergenic |
GGTTAATAATCGCCAACATG+AGG | 0.626687 | 8.4:+232582 | MS.gene43480:CDS |
CCACGTTCCGATGACGGCGA+CGG | 0.626939 | 8.4:+228361 | MS.gene43480:CDS |
AGTCCATTAAATTTATGACA+AGG | 0.631335 | 8.4:-236549 | None:intergenic |
AGATGTTGCTTTGTCTTGGG+CGG | 0.631632 | 8.4:-228960 | None:intergenic |
GCTGGAGGAAAAGAGCCGCC+GGG | 0.633967 | 8.4:+230728 | MS.gene43480:CDS |
GAAGAATAAAGTCACTGGAG+AGG | 0.635917 | 8.4:+232644 | MS.gene43480:CDS |
AGTACACAGAAGGAGGGTGA+AGG | 0.638528 | 8.4:+231433 | MS.gene43480:CDS |
CACTAGAGAAGCGAGAAGAG+AGG | 0.638861 | 8.4:+234380 | MS.gene43480:CDS |
CTAATAATGATATCTCTGAA+CGG | 0.639682 | 8.4:-232681 | None:intergenic |
TAATACAAAAGTTCTGCGGA+TGG | 0.640306 | 8.4:+233562 | MS.gene43480:CDS |
AGGAGAAACTGGAAAGCTGG+TGG | 0.645216 | 8.4:+234309 | MS.gene43480:intron |
ATATGTGCATAGCATGTGCT+CGG | 0.645443 | 8.4:-228437 | None:intergenic |
CACTGAGAGGAAGAAATCTG+TGG | 0.647981 | 8.4:+228745 | MS.gene43480:CDS |
TTTGAAGGAGAAACTGCTGG+AGG | 0.658729 | 8.4:+230713 | MS.gene43480:CDS |
TGCTCGCTTGAAACAACTGG+AGG | 0.661475 | 8.4:+231459 | MS.gene43480:CDS |
TGTGCATAGCATGTGCTCGG+AGG | 0.667920 | 8.4:-228434 | None:intergenic |
TCTTTCAGAGACCATAGAGA+GGG | 0.673302 | 8.4:+229003 | MS.gene43480:CDS |
ATGACATGACAGACACTGAG+AGG | 0.677214 | 8.4:+228732 | MS.gene43480:intron |
TCATTACACATCTCAGCCTG+AGG | 0.681344 | 8.4:+235333 | MS.gene43480:CDS |
CCAGGATCAACTCTTGAAGG+AGG | 0.683215 | 8.4:+228826 | MS.gene43480:CDS |
CTGCTAATACAAAAGTTCTG+CGG | 0.683446 | 8.4:+233558 | MS.gene43480:CDS |
GCAGCTAGCAGTTGTCACAG+AGG | 0.683964 | 8.4:+232312 | MS.gene43480:intron |
ATTTACAGTACACAGAAGGA+GGG | 0.690417 | 8.4:+231427 | MS.gene43480:CDS |
TGTTATCTATGAGGATCCGG+CGG | 0.704459 | 8.4:+228396 | MS.gene43480:CDS |
CAGATTGTGCCCTTTCCCGG+CGG | 0.704598 | 8.4:-230743 | None:intergenic |
ATCTTTCAGAGACCATAGAG+AGG | 0.704981 | 8.4:+229002 | MS.gene43480:CDS |
TTGATGATTAAAGACATACC+TGG | 0.713365 | 8.4:+230834 | MS.gene43480:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 228328 | 236559 | 228328 | ID=MS.gene43480 |
chr8.4 | mRNA | 228328 | 236559 | 228328 | ID=MS.gene43480.t1;Parent=MS.gene43480 |
chr8.4 | exon | 228328 | 228474 | 228328 | ID=MS.gene43480.t1.exon1;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 228328 | 228474 | 228328 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 228564 | 228663 | 228564 | ID=MS.gene43480.t1.exon2;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 228564 | 228663 | 228564 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 228744 | 229102 | 228744 | ID=MS.gene43480.t1.exon3;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 228744 | 229102 | 228744 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 229182 | 229274 | 229182 | ID=MS.gene43480.t1.exon4;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 229182 | 229274 | 229182 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 229385 | 229501 | 229385 | ID=MS.gene43480.t1.exon5;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 229385 | 229501 | 229385 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 230657 | 230904 | 230657 | ID=MS.gene43480.t1.exon6;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 230657 | 230904 | 230657 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 231420 | 231591 | 231420 | ID=MS.gene43480.t1.exon7;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 231420 | 231591 | 231420 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 232316 | 232414 | 232316 | ID=MS.gene43480.t1.exon8;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 232316 | 232414 | 232316 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 232508 | 232711 | 232508 | ID=MS.gene43480.t1.exon9;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 232508 | 232711 | 232508 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 233536 | 233698 | 233536 | ID=MS.gene43480.t1.exon10;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 233536 | 233698 | 233536 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 234311 | 234401 | 234311 | ID=MS.gene43480.t1.exon11;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 234311 | 234401 | 234311 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 234492 | 234561 | 234492 | ID=MS.gene43480.t1.exon12;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 234492 | 234561 | 234492 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 235019 | 235147 | 235019 | ID=MS.gene43480.t1.exon13;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 235019 | 235147 | 235019 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 235328 | 235366 | 235328 | ID=MS.gene43480.t1.exon14;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 235328 | 235366 | 235328 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
chr8.4 | exon | 236470 | 236559 | 236470 | ID=MS.gene43480.t1.exon15;Parent=MS.gene43480.t1 |
chr8.4 | CDS | 236470 | 236559 | 236470 | ID=cds.MS.gene43480.t1;Parent=MS.gene43480.t1 |
Gene Sequence |
Protein sequence |