Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43652.t1 | AES98394.1 | 78.2 | 239 | 26 | 2 | 5 | 217 | 4 | 242 | 1.50E-101 | 379 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43652.t1 | Q9FMM4 | 36.1 | 72 | 45 | 1 | 142 | 213 | 611 | 681 | 7.0e-12 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43652.t1 | G7KD92 | 78.2 | 239 | 26 | 2 | 5 | 217 | 4 | 242 | 1.0e-101 | 379.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43652 | MS.gene010343 | PPI |
| MS.gene43652 | MS.gene97792 | PPI |
| MS.gene43652 | MS.gene017995 | PPI |
| MS.gene43652 | MS.gene041075 | PPI |
| MS.gene43652 | MS.gene28214 | PPI |
| MS.gene43652 | MS.gene93488 | PPI |
| MS.gene43652 | MS.gene94534 | PPI |
| MS.gene43652 | MS.gene93487 | PPI |
| MS.gene43652 | MS.gene94527 | PPI |
| MS.gene43652 | MS.gene017970 | PPI |
| MS.gene43652 | MS.gene047623 | PPI |
| MS.gene43652 | MS.gene055988 | PPI |
| MS.gene43652 | MS.gene94530 | PPI |
| MS.gene43652 | MS.gene79417 | PPI |
| MS.gene43652 | MS.gene28213 | PPI |
| MS.gene43652 | MS.gene28215 | PPI |
| MS.gene43652 | MS.gene94537 | PPI |
| MS.gene43652 | MS.gene93489 | PPI |
| MS.gene43652 | MS.gene015160 | PPI |
| MS.gene43652 | MS.gene94533 | PPI |
| MS.gene43652 | MS.gene79416 | PPI |
| MS.gene43652 | MS.gene52667 | PPI |
| MS.gene43652 | MS.gene94532 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43652.t1 | MTR_5g068000 | 78.243 | 239 | 26 | 2 | 5 | 217 | 4 | 242 | 1.80e-130 | 367 |
| MS.gene43652.t1 | MTR_3g025940 | 36.364 | 99 | 60 | 3 | 120 | 217 | 352 | 448 | 5.99e-15 | 73.2 |
| MS.gene43652.t1 | MTR_5g016960 | 51.667 | 60 | 25 | 2 | 152 | 211 | 538 | 593 | 3.01e-13 | 68.6 |
| MS.gene43652.t1 | MTR_1g019200 | 38.356 | 73 | 43 | 2 | 142 | 213 | 634 | 705 | 9.67e-12 | 63.9 |
| MS.gene43652.t1 | MTR_5g016920 | 46.154 | 52 | 27 | 1 | 166 | 217 | 98 | 148 | 2.00e-11 | 60.5 |
| MS.gene43652.t1 | MTR_1g009680 | 54.762 | 42 | 18 | 1 | 168 | 209 | 428 | 468 | 2.97e-11 | 62.4 |
| MS.gene43652.t1 | MTR_8g106240 | 41.538 | 65 | 35 | 2 | 150 | 212 | 286 | 349 | 3.86e-11 | 62.0 |
| MS.gene43652.t1 | MTR_5g078900 | 56.522 | 46 | 19 | 1 | 166 | 211 | 311 | 355 | 4.37e-11 | 61.6 |
| MS.gene43652.t1 | MTR_5g079050 | 59.091 | 44 | 17 | 1 | 166 | 209 | 311 | 353 | 5.41e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43652.t1 | AT5G42940 | 36.111 | 72 | 45 | 1 | 142 | 213 | 611 | 681 | 5.60e-13 | 67.8 |
| MS.gene43652.t1 | AT5G42940 | 36.111 | 72 | 45 | 1 | 142 | 213 | 611 | 681 | 5.60e-13 | 67.8 |
| MS.gene43652.t1 | AT3G15070 | 48.276 | 58 | 29 | 1 | 152 | 209 | 412 | 468 | 2.49e-12 | 65.9 |
| MS.gene43652.t1 | AT3G15070 | 48.276 | 58 | 29 | 1 | 152 | 209 | 412 | 468 | 2.49e-12 | 65.9 |
| MS.gene43652.t1 | AT5G67120 | 46.154 | 52 | 27 | 1 | 161 | 212 | 220 | 270 | 1.00e-10 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTGAGAATCTTGAATT+TGG | 0.134776 | 5.1:-52677018 | MS.gene43652:CDS |
| TAGCTGGTAGGTTCCTATTT+TGG | 0.215482 | 5.1:+52678467 | None:intergenic |
| AAATATACCTGCGACCTTAA+AGG | 0.219184 | 5.1:+52677947 | None:intergenic |
| TATGTCCACTTTGCAATAAA+AGG | 0.219777 | 5.1:-52676710 | MS.gene43652:CDS |
| AAAGCTCCAATCAACCTTTA+AGG | 0.240288 | 5.1:-52677961 | MS.gene43652:CDS |
| CTTCAAGCAACTTCCAAAAT+AGG | 0.244919 | 5.1:-52678480 | MS.gene43652:CDS |
| GAACAACAAGTAACAATTAA+TGG | 0.277286 | 5.1:-52678310 | MS.gene43652:CDS |
| TCCATCGTTTCTCTCACTTT+AGG | 0.331799 | 5.1:+52678253 | None:intergenic |
| AAGATTCTCACGACGAATAT+TGG | 0.334926 | 5.1:+52677026 | None:intergenic |
| CATCTTCCACAACCGATTAA+TGG | 0.339547 | 5.1:-52677333 | MS.gene43652:intron |
| TTTGACGTCCCCAAGCAATT+TGG | 0.345197 | 5.1:+52677981 | None:intergenic |
| GTCGTGAGAATCTTGAATTT+GGG | 0.369527 | 5.1:-52677017 | MS.gene43652:CDS |
| GGAATCTTTGCAGTTTCAAC+TGG | 0.379486 | 5.1:+52678349 | None:intergenic |
| CTGCGACCTTAAAGGTTGAT+TGG | 0.396566 | 5.1:+52677955 | None:intergenic |
| GGTTGGTTTGGACCATTAAT+CGG | 0.399092 | 5.1:+52677321 | None:intergenic |
| GAGAGAAACGATGGAGTATA+TGG | 0.405916 | 5.1:-52678245 | MS.gene43652:intron |
| ATTATAGGTCCAAATTGCTT+GGG | 0.412553 | 5.1:-52677990 | MS.gene43652:intron |
| GTTTCTCTCACTTTAGGATC+AGG | 0.415420 | 5.1:+52678259 | None:intergenic |
| TGTTCAACAATCTGACCAAC+TGG | 0.418248 | 5.1:+52678328 | None:intergenic |
| GGATCATCTTCAAATAGCTC+TGG | 0.423511 | 5.1:+52678439 | None:intergenic |
| TATTATAGGTCCAAATTGCT+TGG | 0.426107 | 5.1:-52677991 | MS.gene43652:intron |
| ATGTCCACTTTGCAATAAAA+GGG | 0.430943 | 5.1:-52676709 | MS.gene43652:CDS |
| ACAATCATGCTGCATTTGTC+TGG | 0.461362 | 5.1:-52676974 | MS.gene43652:intron |
| CATTAATCGGTTGTGGAAGA+TGG | 0.472050 | 5.1:+52677334 | None:intergenic |
| TCTAGTAGATATTTGAAGAC+TGG | 0.482679 | 5.1:+52678418 | None:intergenic |
| TTTACAACAATGAACACTAA+AGG | 0.485501 | 5.1:-52678821 | None:intergenic |
| ACATGAGTTGCATTAAAGAC+TGG | 0.489249 | 5.1:-52676752 | MS.gene43652:CDS |
| AATAGCTCTGGGTACATAGC+TGG | 0.501323 | 5.1:+52678451 | None:intergenic |
| TTTGGACCATTAATCGGTTG+TGG | 0.503702 | 5.1:+52677327 | None:intergenic |
| CAATCAACCTTTAAGGTCGC+AGG | 0.515350 | 5.1:-52677954 | MS.gene43652:intron |
| GCTTCTACATTGCGTATCAC+CGG | 0.523524 | 5.1:+52677057 | None:intergenic |
| GATCATCTTCAAATAGCTCT+GGG | 0.557026 | 5.1:+52678440 | None:intergenic |
| GGATGCAGAAGCTTACCAAC+CGG | 0.560519 | 5.1:-52677076 | MS.gene43652:intron |
| GACATACATTCTTAACAGCT+AGG | 0.585325 | 5.1:+52676727 | None:intergenic |
| CTGCTGGTGAAGAAATTGAA+AGG | 0.590567 | 5.1:-52676797 | MS.gene43652:CDS |
| GAAACTGCAAAGATTCCAGT+TGG | 0.606921 | 5.1:-52678343 | MS.gene43652:CDS |
| ATGTCTCTAGGTCGAACTGA+AGG | 0.609095 | 5.1:-52678511 | MS.gene43652:intron |
| TCGTGAGAATCTTGAATTTG+GGG | 0.614713 | 5.1:-52677016 | MS.gene43652:CDS |
| TTATAGGTCCAAATTGCTTG+GGG | 0.620684 | 5.1:-52677989 | MS.gene43652:intron |
| CTACATTGCGTATCACCGGT+TGG | 0.621223 | 5.1:+52677061 | None:intergenic |
| TCCTAAAGTGAGAGAAACGA+TGG | 0.622912 | 5.1:-52678254 | MS.gene43652:CDS |
| TGTCCACTTTGCAATAAAAG+GGG | 0.631920 | 5.1:-52676708 | MS.gene43652:CDS |
| GCTCTGGGTACATAGCTGGT+AGG | 0.635087 | 5.1:+52678455 | None:intergenic |
| TCTACTAGAGACTACAAAGA+GGG | 0.646438 | 5.1:-52678404 | MS.gene43652:CDS |
| ATCTACTAGAGACTACAAAG+AGG | 0.668788 | 5.1:-52678405 | MS.gene43652:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTATAATTCTAAATTT+CGG | + | chr5.1:52676903-52676922 | None:intergenic | 10.0% |
| !!! | TATGTTTGATTTATTAATTA+GGG | - | chr5.1:52677424-52677443 | MS.gene43652:intron | 10.0% |
| !!! | TTATGTTTGATTTATTAATT+AGG | - | chr5.1:52677423-52677442 | MS.gene43652:intron | 10.0% |
| !! | CTAAAATTTCTCTTATAAAT+AGG | + | chr5.1:52677629-52677648 | None:intergenic | 15.0% |
| !! | TTATACTACAACTATTAATT+AGG | + | chr5.1:52677388-52677407 | None:intergenic | 15.0% |
| !!! | CATATTTCTATAAACATTTT+AGG | - | chr5.1:52677914-52677933 | MS.gene43652:intron | 15.0% |
| !! | CCTATTTATAAAAGAAAGTT+GGG | + | chr5.1:52677713-52677732 | None:intergenic | 20.0% |
| !! | GAAGAATTCAATTAAAATCA+AGG | + | chr5.1:52678378-52678397 | None:intergenic | 20.0% |
| !! | GTAGTATAAGAAAAAAGAAT+TGG | - | chr5.1:52677399-52677418 | MS.gene43652:intron | 20.0% |
| !! | TATATGAATTCTCATGTATA+AGG | + | chr5.1:52677987-52678006 | None:intergenic | 20.0% |
| !! | TATCATATATATCACATGAT+AGG | + | chr5.1:52676927-52676946 | None:intergenic | 20.0% |
| !! | TCAACTTCTAATCAATTATT+TGG | - | chr5.1:52678087-52678106 | MS.gene43652:intron | 20.0% |
| !! | TCCTATTTATAAAAGAAAGT+TGG | + | chr5.1:52677714-52677733 | None:intergenic | 20.0% |
| !! | TCTAATCAATTATTTGGTAT+TGG | - | chr5.1:52678093-52678112 | MS.gene43652:intron | 20.0% |
| !!! | AATCTTCTAAAGTAAATTCA+TGG | - | chr5.1:52677306-52677325 | MS.gene43652:intron | 20.0% |
| !!! | ATCTTCTAAAGTAAATTCAT+GGG | - | chr5.1:52677307-52677326 | MS.gene43652:intron | 20.0% |
| !!! | TAATTAGGTTTTTTAACGTT+AGG | - | chr5.1:52678553-52678572 | MS.gene43652:intron | 20.0% |
| ! | AAAAACATTATGATGTCTCT+AGG | - | chr5.1:52676981-52677000 | MS.gene43652:CDS | 25.0% |
| ! | AACAAATTTGATGTAATGTC+AGG | - | chr5.1:52678675-52678694 | MS.gene43652:intron | 25.0% |
| ! | AATAAAAATATATACAGCCG+CGG | - | chr5.1:52678404-52678423 | MS.gene43652:CDS | 25.0% |
| ! | ACATGAGAATTCATATACAT+AGG | - | chr5.1:52677990-52678009 | MS.gene43652:intron | 25.0% |
| ! | ATAATTTGATTGCTGAAGAT+GGG | + | chr5.1:52678217-52678236 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | + | chr5.1:52677624-52677643 | None:intergenic | 25.0% |
| ! | GAACAACAAGTAACAATTAA+TGG | - | chr5.1:52677194-52677213 | MS.gene43652:intron | 25.0% |
| ! | GCATGTATTTATTTGAATCT+TGG | - | chr5.1:52677342-52677361 | MS.gene43652:CDS | 25.0% |
| ! | TCAATAATATATACTCCATC+CGG | + | chr5.1:52677737-52677756 | None:intergenic | 25.0% |
| ! | TTTATATTATATACTCCCTC+CGG | - | chr5.1:52677602-52677621 | MS.gene43652:intron | 25.0% |
| !! | AAAGTTTGACTCTTGTTTAA+TGG | - | chr5.1:52677456-52677475 | MS.gene43652:intron | 25.0% |
| !! | AAGTTTGACTCTTGTTTAAT+GGG | - | chr5.1:52677457-52677476 | MS.gene43652:intron | 25.0% |
| !! | CCCAACTTTCTTTTATAAAT+AGG | - | chr5.1:52677710-52677729 | MS.gene43652:intron | 25.0% |
| !! | CTTTCTTTTATAAATAGGAC+CGG | - | chr5.1:52677715-52677734 | MS.gene43652:intron | 25.0% |
| !! | TACTTTATAGCTTGTAAGTA+TGG | + | chr5.1:52677805-52677824 | None:intergenic | 25.0% |
| !!! | AATTCATGGGAATTTGTTTT+TGG | - | chr5.1:52677320-52677339 | MS.gene43652:intron | 25.0% |
| !!! | ATATTTTGGGTCATGTAATT+AGG | - | chr5.1:52676732-52676751 | MS.gene43652:CDS | 25.0% |
| AAATTATCATGCTCAAAACG+AGG | - | chr5.1:52678230-52678249 | MS.gene43652:intron | 30.0% | |
| ATGTCCACTTTGCAATAAAA+GGG | - | chr5.1:52678795-52678814 | MS.gene43652:intron | 30.0% | |
| ATTATAGGTCCAAATTGCTT+GGG | - | chr5.1:52677514-52677533 | MS.gene43652:intron | 30.0% | |
| GACTAGAGAAAACTACAATT+TGG | + | chr5.1:52678066-52678085 | None:intergenic | 30.0% | |
| GATAATTTGATTGCTGAAGA+TGG | + | chr5.1:52678218-52678237 | None:intergenic | 30.0% | |
| TATGTCCACTTTGCAATAAA+AGG | - | chr5.1:52678794-52678813 | MS.gene43652:intron | 30.0% | |
| TATTATAGGTCCAAATTGCT+TGG | - | chr5.1:52677513-52677532 | MS.gene43652:intron | 30.0% | |
| TCTAGTAGATATTTGAAGAC+TGG | + | chr5.1:52677089-52677108 | None:intergenic | 30.0% | |
| TGCTTGCATTGTTAATCATT+TGG | - | chr5.1:52676947-52676966 | MS.gene43652:intron | 30.0% | |
| TTACTAAAAGATCTCTACCA+TGG | + | chr5.1:52676860-52676879 | None:intergenic | 30.0% | |
| !!! | CACTAGTTTTCGTGTATTAT+AGG | - | chr5.1:52677499-52677518 | MS.gene43652:intron | 30.0% |
| AAAGCTCCAATCAACCTTTA+AGG | - | chr5.1:52677543-52677562 | MS.gene43652:intron | 35.0% | |
| AAATATACCTGCGACCTTAA+AGG | + | chr5.1:52677560-52677579 | None:intergenic | 35.0% | |
| AAGATTCTCACGACGAATAT+TGG | + | chr5.1:52678481-52678500 | None:intergenic | 35.0% | |
| ACATGAGTTGCATTAAAGAC+TGG | - | chr5.1:52678752-52678771 | MS.gene43652:intron | 35.0% | |
| ATCTACTAGAGACTACAAAG+AGG | - | chr5.1:52677099-52677118 | MS.gene43652:intron | 35.0% | |
| CAATTACCGTTACAATACCA+TGG | - | chr5.1:52676840-52676859 | MS.gene43652:intron | 35.0% | |
| CTTCAAGCAACTTCCAAAAT+AGG | - | chr5.1:52677024-52677043 | MS.gene43652:CDS | 35.0% | |
| CTTGTAAGTATGGATCTCTT+AGG | + | chr5.1:52677795-52677814 | None:intergenic | 35.0% | |
| GACATACATTCTTAACAGCT+AGG | + | chr5.1:52678780-52678799 | None:intergenic | 35.0% | |
| GATCATCTTCAAATAGCTCT+GGG | + | chr5.1:52677067-52677086 | None:intergenic | 35.0% | |
| GGGTCATGTAATTAGGTTTA+TGG | - | chr5.1:52676739-52676758 | MS.gene43652:CDS | 35.0% | |
| GTCGTGAGAATCTTGAATTT+GGG | - | chr5.1:52678487-52678506 | MS.gene43652:CDS | 35.0% | |
| TCGTGAGAATCTTGAATTTG+GGG | - | chr5.1:52678488-52678507 | MS.gene43652:CDS | 35.0% | |
| TCTACTAGAGACTACAAAGA+GGG | - | chr5.1:52677100-52677119 | MS.gene43652:intron | 35.0% | |
| TCTCTACCATGGTATTGTAA+CGG | + | chr5.1:52676849-52676868 | None:intergenic | 35.0% | |
| TGTCCACTTTGCAATAAAAG+GGG | - | chr5.1:52678796-52678815 | MS.gene43652:intron | 35.0% | |
| TTATAGGTCCAAATTGCTTG+GGG | - | chr5.1:52677515-52677534 | MS.gene43652:intron | 35.0% | |
| ! | CAGCATGATTGTGTATTTTC+GGG | + | chr5.1:52678522-52678541 | None:intergenic | 35.0% |
| ! | CTTTTATAAATAGGACCGGA+TGG | - | chr5.1:52677719-52677738 | MS.gene43652:intron | 35.0% |
| ! | GCAGCATGATTGTGTATTTT+CGG | + | chr5.1:52678523-52678542 | None:intergenic | 35.0% |
| ! | TATCCCCTTTTATTGCAAAG+TGG | + | chr5.1:52678802-52678821 | None:intergenic | 35.0% |
| AAAAATATATACAGCCGCGG+TGG | - | chr5.1:52678407-52678426 | MS.gene43652:CDS | 40.0% | |
| ACAATCATGCTGCATTTGTC+TGG | - | chr5.1:52678530-52678549 | MS.gene43652:intron | 40.0% | |
| CATCTTCCACAACCGATTAA+TGG | - | chr5.1:52678171-52678190 | MS.gene43652:intron | 40.0% | |
| CATTAATCGGTTGTGGAAGA+TGG | + | chr5.1:52678173-52678192 | None:intergenic | 40.0% | |
| CGTCGTGAGAATCTTGAATT+TGG | - | chr5.1:52678486-52678505 | MS.gene43652:CDS | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5.1:52677620-52677639 | None:intergenic | 40.0% | |
| CTGCTGGTGAAGAAATTGAA+AGG | - | chr5.1:52678707-52678726 | MS.gene43652:intron | 40.0% | |
| GAAACTGCAAAGATTCCAGT+TGG | - | chr5.1:52677161-52677180 | MS.gene43652:intron | 40.0% | |
| GAGAGAAACGATGGAGTATA+TGG | - | chr5.1:52677259-52677278 | MS.gene43652:intron | 40.0% | |
| GCTGCATTTGTCTGGTAATT+AGG | - | chr5.1:52678538-52678557 | MS.gene43652:intron | 40.0% | |
| GGAATCTTTGCAGTTTCAAC+TGG | + | chr5.1:52677158-52677177 | None:intergenic | 40.0% | |
| GGATCATCTTCAAATAGCTC+TGG | + | chr5.1:52677068-52677087 | None:intergenic | 40.0% | |
| TCCATCGTTTCTCTCACTTT+AGG | + | chr5.1:52677254-52677273 | None:intergenic | 40.0% | |
| TCCTAAAGTGAGAGAAACGA+TGG | - | chr5.1:52677250-52677269 | MS.gene43652:intron | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5.1:52677621-52677640 | None:intergenic | 40.0% | |
| TGTTCAACAATCTGACCAAC+TGG | + | chr5.1:52677179-52677198 | None:intergenic | 40.0% | |
| TTTGGACCATTAATCGGTTG+TGG | + | chr5.1:52678180-52678199 | None:intergenic | 40.0% | |
| ! | TAGCTGGTAGGTTCCTATTT+TGG | + | chr5.1:52677040-52677059 | None:intergenic | 40.0% |
| ! | TATTGGCCAACGAGTTTTTC+AGG | - | chr5.1:52678110-52678129 | MS.gene43652:intron | 40.0% |
| ! | TGTCAGGAAAATTTTGCTGC+TGG | - | chr5.1:52678691-52678710 | MS.gene43652:intron | 40.0% |
| !! | GGTTGGTTTGGACCATTAAT+CGG | + | chr5.1:52678186-52678205 | None:intergenic | 40.0% |
| !! | GTTTCTCTCACTTTAGGATC+AGG | + | chr5.1:52677248-52677267 | None:intergenic | 40.0% |
| ATGTCTCTAGGTCGAACTGA+AGG | - | chr5.1:52676993-52677012 | MS.gene43652:CDS | 45.0% | |
| GCTTCTACATTGCGTATCAC+CGG | + | chr5.1:52678450-52678469 | None:intergenic | 45.0% | |
| TCCGATCCTGAAAAACTCGT+TGG | + | chr5.1:52678119-52678138 | None:intergenic | 45.0% | |
| TTTGACGTCCCCAAGCAATT+TGG | + | chr5.1:52677526-52677545 | None:intergenic | 45.0% | |
| ! | CTGCGACCTTAAAGGTTGAT+TGG | + | chr5.1:52677552-52677571 | None:intergenic | 45.0% |
| !! | AATAGCTCTGGGTACATAGC+TGG | + | chr5.1:52677056-52677075 | None:intergenic | 45.0% |
| !! | CAATCAACCTTTAAGGTCGC+AGG | - | chr5.1:52677550-52677569 | MS.gene43652:intron | 45.0% |
| !!! | ACGAGTTTTTCAGGATCGGA+CGG | - | chr5.1:52678119-52678138 | MS.gene43652:intron | 45.0% |
| !!! | GCCAACGAGTTTTTCAGGAT+CGG | - | chr5.1:52678115-52678134 | MS.gene43652:intron | 45.0% |
| !!! | TTTTTTAATTGTAATATTTT+GGG | - | chr5.1:52676719-52676738 | MS.gene43652:CDS | 5.0% |
| !!! | TTTTTTTAATTGTAATATTT+TGG | - | chr5.1:52676718-52676737 | MS.gene43652:CDS | 5.0% |
| CTACATTGCGTATCACCGGT+TGG | + | chr5.1:52678446-52678465 | None:intergenic | 50.0% | |
| GGATGCAGAAGCTTACCAAC+CGG | - | chr5.1:52678428-52678447 | MS.gene43652:CDS | 50.0% | |
| ! | TGGGCTAACACTGGTTGGTT+TGG | + | chr5.1:52678198-52678217 | None:intergenic | 50.0% |
| !! | GAAGATGGGCTAACACTGGT+TGG | + | chr5.1:52678203-52678222 | None:intergenic | 50.0% |
| !! | TGCTGAAGATGGGCTAACAC+TGG | + | chr5.1:52678207-52678226 | None:intergenic | 50.0% |
| GTAAGCTTCTGCATCCACCG+CGG | + | chr5.1:52678424-52678443 | None:intergenic | 55.0% | |
| ! | GCTCTGGGTACATAGCTGGT+AGG | + | chr5.1:52677052-52677071 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52676692 | 52678834 | 52676692 | ID=MS.gene43652 |
| chr5.1 | mRNA | 52676692 | 52678834 | 52676692 | ID=MS.gene43652.t1;Parent=MS.gene43652 |
| chr5.1 | exon | 52678822 | 52678834 | 52678822 | ID=MS.gene43652.t1.exon1;Parent=MS.gene43652.t1 |
| chr5.1 | CDS | 52678822 | 52678834 | 52678822 | ID=cds.MS.gene43652.t1;Parent=MS.gene43652.t1 |
| chr5.1 | exon | 52678246 | 52678523 | 52678246 | ID=MS.gene43652.t1.exon2;Parent=MS.gene43652.t1 |
| chr5.1 | CDS | 52678246 | 52678523 | 52678246 | ID=cds.MS.gene43652.t1;Parent=MS.gene43652.t1 |
| chr5.1 | exon | 52677955 | 52678005 | 52677955 | ID=MS.gene43652.t1.exon3;Parent=MS.gene43652.t1 |
| chr5.1 | CDS | 52677955 | 52678005 | 52677955 | ID=cds.MS.gene43652.t1;Parent=MS.gene43652.t1 |
| chr5.1 | exon | 52677334 | 52677394 | 52677334 | ID=MS.gene43652.t1.exon4;Parent=MS.gene43652.t1 |
| chr5.1 | CDS | 52677334 | 52677394 | 52677334 | ID=cds.MS.gene43652.t1;Parent=MS.gene43652.t1 |
| chr5.1 | exon | 52676975 | 52677087 | 52676975 | ID=MS.gene43652.t1.exon5;Parent=MS.gene43652.t1 |
| chr5.1 | CDS | 52676975 | 52677087 | 52676975 | ID=cds.MS.gene43652.t1;Parent=MS.gene43652.t1 |
| chr5.1 | exon | 52676692 | 52676829 | 52676692 | ID=MS.gene43652.t1.exon6;Parent=MS.gene43652.t1 |
| chr5.1 | CDS | 52676692 | 52676829 | 52676692 | ID=cds.MS.gene43652.t1;Parent=MS.gene43652.t1 |
| Gene Sequence |
| Protein sequence |
