Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43658.t1 | AES98394.1 | 86.7 | 240 | 32 | 0 | 10 | 249 | 1 | 240 | 3.40E-118 | 434.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43658.t1 | Q9FMM4 | 37.7 | 69 | 41 | 2 | 178 | 245 | 612 | 679 | 7.6e-10 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43658.t1 | G7KD92 | 86.7 | 240 | 32 | 0 | 10 | 249 | 1 | 240 | 2.4e-118 | 434.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43658 | MS.gene79416 | PPI |
| MS.gene43658 | MS.gene52667 | PPI |
| MS.gene43658 | MS.gene94532 | PPI |
| MS.gene43658 | MS.gene017970 | PPI |
| MS.gene43658 | MS.gene010343 | PPI |
| MS.gene43658 | MS.gene97792 | PPI |
| MS.gene43658 | MS.gene055988 | PPI |
| MS.gene43658 | MS.gene017995 | PPI |
| MS.gene43658 | MS.gene041075 | PPI |
| MS.gene43658 | MS.gene93488 | PPI |
| MS.gene43658 | MS.gene94534 | PPI |
| MS.gene43658 | MS.gene93487 | PPI |
| MS.gene43658 | MS.gene94527 | PPI |
| MS.gene43658 | MS.gene047623 | PPI |
| MS.gene43658 | MS.gene94530 | PPI |
| MS.gene43658 | MS.gene79417 | PPI |
| MS.gene43658 | MS.gene28215 | PPI |
| MS.gene43658 | MS.gene28213 | PPI |
| MS.gene43658 | MS.gene94533 | PPI |
| MS.gene43658 | MS.gene94537 | PPI |
| MS.gene43658 | MS.gene93489 | PPI |
| MS.gene43658 | MS.gene015160 | PPI |
| MS.gene43658 | MS.gene28214 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43658.t1 | MTR_5g068000 | 86.307 | 241 | 33 | 0 | 10 | 250 | 1 | 241 | 7.32e-153 | 425 |
| MS.gene43658.t1 | MTR_5g016960 | 52.941 | 51 | 23 | 1 | 200 | 250 | 549 | 598 | 8.96e-12 | 65.1 |
| MS.gene43658.t1 | MTR_3g025940 | 43.103 | 58 | 32 | 1 | 193 | 250 | 391 | 447 | 9.71e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43658.t1 | AT5G42940 | 45.098 | 51 | 27 | 1 | 195 | 245 | 630 | 679 | 3.78e-11 | 63.2 |
| MS.gene43658.t1 | AT5G42940 | 45.098 | 51 | 27 | 1 | 195 | 245 | 630 | 679 | 3.78e-11 | 63.2 |
| MS.gene43658.t1 | AT5G67120 | 50.000 | 50 | 24 | 1 | 195 | 244 | 220 | 268 | 6.18e-11 | 61.6 |
| MS.gene43658.t1 | AT4G34040 | 40.741 | 54 | 31 | 1 | 194 | 247 | 611 | 663 | 6.46e-11 | 62.4 |
Find 55 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTGATGATCTTGAATT+TGG | 0.166732 | 5.1:-52741537 | MS.gene43658:CDS |
| GAACAACAAGTAACAATTAT+TGG | 0.214032 | 5.1:-52742405 | MS.gene43658:CDS |
| AAAGCTCCAATCAACCTTTA+AGG | 0.240288 | 5.1:-52742057 | MS.gene43658:CDS |
| AAATTTACCTGCGACCTTAA+AGG | 0.244607 | 5.1:+52742043 | None:intergenic |
| TCCATTGTTTCTCTCACTTT+AGG | 0.294080 | 5.1:+52742348 | None:intergenic |
| GATGTAATGTCAGGAAAATT+TGG | 0.316379 | 5.1:-52741318 | MS.gene43658:intron |
| TTTGACGTTCCCAAGCAATT+TGG | 0.318565 | 5.1:+52742077 | None:intergenic |
| CATCTTCCACAACCGATTAA+TGG | 0.339547 | 5.1:-52741796 | MS.gene43658:CDS |
| GTGACGAAGGCGTTCTCTTT+CGG | 0.341109 | 5.1:+52742476 | None:intergenic |
| GAGAGAAACAATGGAGTATA+TGG | 0.346210 | 5.1:-52742340 | MS.gene43658:intron |
| AAGATCATCACGACGAATAT+TGG | 0.355669 | 5.1:+52741545 | None:intergenic |
| CTGCGACCTTAAAGGTTGAT+TGG | 0.360105 | 5.1:+52742051 | None:intergenic |
| CTTCAAGCAATTTCAAAAGT+AGG | 0.364624 | 5.1:-52742575 | MS.gene43658:CDS |
| GGTTGGTTTGGACCATTAAT+CGG | 0.393192 | 5.1:+52741784 | None:intergenic |
| GTTTCTCTCACTTTAGGATC+AGG | 0.407404 | 5.1:+52742354 | None:intergenic |
| ATAATTTAATTGTTGAAGAT+GGG | 0.408228 | 5.1:+52741753 | None:intergenic |
| GATAATTTAATTGTTGAAGA+TGG | 0.408311 | 5.1:+52741752 | None:intergenic |
| TATTATAGGTCCAAATTGCT+TGG | 0.412627 | 5.1:-52742087 | MS.gene43658:intron |
| TTCAAGCAATTTCAAAAGTA+GGG | 0.416269 | 5.1:-52742574 | MS.gene43658:CDS |
| TGTTCAACAATCTGACCAAC+TGG | 0.418248 | 5.1:+52742423 | None:intergenic |
| TGGGGTAACAAAGGTTGGTT+TGG | 0.420411 | 5.1:+52741772 | None:intergenic |
| GGATCATCTTCAAATAGCTC+TGG | 0.423511 | 5.1:+52742534 | None:intergenic |
| GGCTGCAGAAACTTAACAAC+CGG | 0.456089 | 5.1:-52741596 | MS.gene43658:CDS |
| GAAGATGGGGTAACAAAGGT+TGG | 0.458299 | 5.1:+52741767 | None:intergenic |
| AATAGCTCTGGGTACATAGC+TGG | 0.462378 | 5.1:+52742546 | None:intergenic |
| CATTAATCGGTTGTGGAAGA+TGG | 0.472050 | 5.1:+52741797 | None:intergenic |
| CTTCTACTTTGCGTATCCAC+CGG | 0.472608 | 5.1:+52741577 | None:intergenic |
| ACAATTGTGCTGCATTTGTC+TGG | 0.487482 | 5.1:-52741493 | MS.gene43658:intron |
| ATTATAGGTCCAAATTGCTT+GGG | 0.489909 | 5.1:-52742086 | MS.gene43658:intron |
| TGTCAGGAAAATTTGGCTGC+TGG | 0.496813 | 5.1:-52741311 | MS.gene43658:intron |
| TTTGGACCATTAATCGGTTG+TGG | 0.503702 | 5.1:+52741790 | None:intergenic |
| AAGACTGGCTCCTAGCTGTA+AGG | 0.506680 | 5.1:-52741235 | MS.gene43658:CDS |
| TATGCCCACTTTGCAATACA+AGG | 0.508013 | 5.1:-52741208 | MS.gene43658:CDS |
| TCACGTAGATATTGAAAGAC+TGG | 0.509822 | 5.1:+52742513 | None:intergenic |
| CAATCAACCTTTAAGGTCGC+AGG | 0.515350 | 5.1:-52742050 | MS.gene43658:intron |
| ACATGAGTTGCATCAAAGAC+TGG | 0.516295 | 5.1:-52741250 | MS.gene43658:CDS |
| TGGAGAAGAAATTGAAAGAC+TGG | 0.520154 | 5.1:-52741291 | MS.gene43658:CDS |
| AAGAACATTATGATGTCTCT+AGG | 0.527328 | 5.1:-52742618 | MS.gene43658:CDS |
| TGTTGAAGATGGGGTAACAA+AGG | 0.532024 | 5.1:+52741763 | None:intergenic |
| GAAATTACTAAGATTCCAGT+TGG | 0.554578 | 5.1:-52742438 | MS.gene43658:CDS |
| GATCATCTTCAAATAGCTCT+GGG | 0.557026 | 5.1:+52742535 | None:intergenic |
| TAATTTAATTGTTGAAGATG+GGG | 0.559952 | 5.1:+52741754 | None:intergenic |
| TCCTAAAGTGAGAGAAACAA+TGG | 0.600914 | 5.1:-52742349 | MS.gene43658:CDS |
| ATGTCTCTAGGTCGAACTGA+AGG | 0.617564 | 5.1:-52742606 | MS.gene43658:CDS |
| GGCATACATTCCTTACAGCT+AGG | 0.618166 | 5.1:+52741225 | None:intergenic |
| ATGCCCTTGTATTGCAAAGT+GGG | 0.626594 | 5.1:+52741204 | None:intergenic |
| CCGACTTACGCATGTGACGA+AGG | 0.635950 | 5.1:+52742463 | None:intergenic |
| CCTTCGTCACATGCGTAAGT+CGG | 0.645967 | 5.1:-52742463 | MS.gene43658:CDS |
| GCTCTGGGTACATAGCTGGA+AGG | 0.649258 | 5.1:+52742550 | None:intergenic |
| TGCAGAAACTTAACAACCGG+TGG | 0.674360 | 5.1:-52741593 | MS.gene43658:CDS |
| TATGCCCTTGTATTGCAAAG+TGG | 0.694373 | 5.1:+52741203 | None:intergenic |
| AAATTATCATGCTCAAAACG+AGG | 0.697419 | 5.1:-52741737 | MS.gene43658:intron |
| ATGCCCACTTTGCAATACAA+GGG | 0.704206 | 5.1:-52741207 | MS.gene43658:CDS |
| TTAAGTTTCTGCAGCCACCG+TGG | 0.730006 | 5.1:+52741603 | None:intergenic |
| AACAATATATACAGCCACGG+TGG | 0.744149 | 5.1:-52741617 | MS.gene43658:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTGCAATTAAAAATAT+AGG | + | chr5.1:52741215-52741234 | None:intergenic | 10.0% |
| !!! | ATTATTGATTTAATATACAT+AGG | - | chr5.1:52742156-52742175 | MS.gene43658:intron | 10.0% |
| !!! | ATTTTTAATTGCAATATTTT+AGG | - | chr5.1:52741217-52741236 | MS.gene43658:CDS | 10.0% |
| !! | ATAATTTAATTGTTGAAGAT+GGG | + | chr5.1:52742383-52742402 | None:intergenic | 15.0% |
| !! | ATATGTTACATTTACTAATT+AGG | - | chr5.1:52741956-52741975 | MS.gene43658:intron | 15.0% |
| !! | CTAATTATAATTCTAACTTT+CGG | + | chr5.1:52741439-52741458 | None:intergenic | 15.0% |
| !! | TATATTGCAACTATTTAATT+AGG | + | chr5.1:52741921-52741940 | None:intergenic | 15.0% |
| !! | TATGTTACATTTACTAATTA+GGG | - | chr5.1:52741957-52741976 | MS.gene43658:intron | 15.0% |
| !! | TTATTCTTCAATTAAAATCA+AGG | + | chr5.1:52742498-52742517 | None:intergenic | 15.0% |
| !! | ATAGTTGCAATATAAGAAAA+AGG | - | chr5.1:52741927-52741946 | MS.gene43658:intron | 20.0% |
| !! | GATAATTTAATTGTTGAAGA+TGG | + | chr5.1:52742384-52742403 | None:intergenic | 20.0% |
| !! | TAATTTAATTGTTGAAGATG+GGG | + | chr5.1:52742382-52742401 | None:intergenic | 20.0% |
| !! | TATCATATATATCACATGAT+TGG | + | chr5.1:52741463-52741482 | None:intergenic | 20.0% |
| !! | TCAACTTCTAATCAAATATT+TGG | - | chr5.1:52742253-52742272 | MS.gene43658:intron | 20.0% |
| !! | TCTAATCAAATATTTGGTAT+TGG | - | chr5.1:52742259-52742278 | MS.gene43658:intron | 20.0% |
| !!! | AATCTTCTAAAGTAAATTCA+TGG | - | chr5.1:52741840-52741859 | MS.gene43658:intron | 20.0% |
| !!! | ATCATAATGTTCTTTTCTTA+CGG | + | chr5.1:52741509-52741528 | None:intergenic | 20.0% |
| ! | AACAAATTTGATGTAATGTC+AGG | - | chr5.1:52742806-52742825 | MS.gene43658:intron | 25.0% |
| ! | AACGTTTACAATATCATTTG+AGG | - | chr5.1:52742677-52742696 | MS.gene43658:intron | 25.0% |
| ! | AATAACAATATATACAGCCA+CGG | - | chr5.1:52742513-52742532 | MS.gene43658:CDS | 25.0% |
| ! | GAACAACAAGTAACAATTAT+TGG | - | chr5.1:52741728-52741747 | MS.gene43658:intron | 25.0% |
| ! | TTCAAGCAATTTCAAAAGTA+GGG | - | chr5.1:52741559-52741578 | MS.gene43658:CDS | 25.0% |
| !! | AAAGTTACACTCTTGTTTAA+TGG | - | chr5.1:52741989-52742008 | MS.gene43658:intron | 25.0% |
| !! | AAGTTACACTCTTGTTTAAT+GGG | - | chr5.1:52741990-52742009 | MS.gene43658:intron | 25.0% |
| !! | TATCATTTGAGGTTAACTTA+AGG | - | chr5.1:52742688-52742707 | MS.gene43658:intron | 25.0% |
| !!! | AAATTCATGGAATTTGTTGT+TGG | - | chr5.1:52741853-52741872 | MS.gene43658:intron | 25.0% |
| AAATTATCATGCTCAAAACG+AGG | - | chr5.1:52742396-52742415 | MS.gene43658:CDS | 30.0% | |
| AAGAACATTATGATGTCTCT+AGG | - | chr5.1:52741515-52741534 | MS.gene43658:CDS | 30.0% | |
| ATCTACGTGAGACTAAAAAA+AGG | - | chr5.1:52741633-52741652 | MS.gene43658:intron | 30.0% | |
| ATTATAGGTCCAAATTGCTT+GGG | - | chr5.1:52742047-52742066 | MS.gene43658:intron | 30.0% | |
| CAATTACAATTACAATGCCA+TGG | - | chr5.1:52741372-52741391 | MS.gene43658:intron | 30.0% | |
| CTTCAAGCAATTTCAAAAGT+AGG | - | chr5.1:52741558-52741577 | MS.gene43658:CDS | 30.0% | |
| GAAATTACTAAGATTCCAGT+TGG | - | chr5.1:52741695-52741714 | MS.gene43658:intron | 30.0% | |
| GATGTAATGTCAGGAAAATT+TGG | - | chr5.1:52742815-52742834 | MS.gene43658:intron | 30.0% | |
| GCGTGTATTTATTTGAATCT+AGG | - | chr5.1:52741875-52741894 | MS.gene43658:intron | 30.0% | |
| TATTATAGGTCCAAATTGCT+TGG | - | chr5.1:52742046-52742065 | MS.gene43658:intron | 30.0% | |
| TCTACGTGAGACTAAAAAAA+GGG | - | chr5.1:52741634-52741653 | MS.gene43658:intron | 30.0% | |
| TTACATAAAGATCTCTACCA+TGG | + | chr5.1:52741392-52741411 | None:intergenic | 30.0% | |
| !!! | CACTAGTTTTCGTGTATTAT+AGG | - | chr5.1:52742032-52742051 | MS.gene43658:intron | 30.0% |
| !!! | GTTTACAACCGTCTTATTTT+GGG | - | chr5.1:52741239-52741258 | MS.gene43658:CDS | 30.0% |
| AAAGCTCCAATCAACCTTTA+AGG | - | chr5.1:52742076-52742095 | MS.gene43658:CDS | 35.0% | |
| AAATTTACCTGCGACCTTAA+AGG | + | chr5.1:52742093-52742112 | None:intergenic | 35.0% | |
| AAGATCATCACGACGAATAT+TGG | + | chr5.1:52742591-52742610 | None:intergenic | 35.0% | |
| AATATAGGTGATCTCACCTT+CGG | + | chr5.1:52741200-52741219 | None:intergenic | 35.0% | |
| GACTAGAGAAAACTACGATT+TGG | + | chr5.1:52742232-52742251 | None:intergenic | 35.0% | |
| GAGAGAAACAATGGAGTATA+TGG | - | chr5.1:52741793-52741812 | MS.gene43658:CDS | 35.0% | |
| GATCATCTTCAAATAGCTCT+GGG | + | chr5.1:52741601-52741620 | None:intergenic | 35.0% | |
| TCACATGACCCAAAATAAGA+CGG | + | chr5.1:52741250-52741269 | None:intergenic | 35.0% | |
| TCACGTAGATATTGAAAGAC+TGG | + | chr5.1:52741623-52741642 | None:intergenic | 35.0% | |
| TCCTAAAGTGAGAGAAACAA+TGG | - | chr5.1:52741784-52741803 | MS.gene43658:CDS | 35.0% | |
| TGGAGAAGAAATTGAAAGAC+TGG | - | chr5.1:52742842-52742861 | MS.gene43658:intron | 35.0% | |
| ! | CAGCACAATTGTGTATTTTC+GGG | + | chr5.1:52742632-52742651 | None:intergenic | 35.0% |
| ! | GCAGCACAATTGTGTATTTT+CGG | + | chr5.1:52742633-52742652 | None:intergenic | 35.0% |
| ! | TCCATTGTTTCTCTCACTTT+AGG | + | chr5.1:52741788-52741807 | None:intergenic | 35.0% |
| !!! | GGTTTACAACCGTCTTATTT+TGG | - | chr5.1:52741238-52741257 | MS.gene43658:CDS | 35.0% |
| AACAATATATACAGCCACGG+TGG | - | chr5.1:52742516-52742535 | MS.gene43658:CDS | 40.0% | |
| ACAATTGTGCTGCATTTGTC+TGG | - | chr5.1:52742640-52742659 | MS.gene43658:intron | 40.0% | |
| ACATGAGTTGCATCAAAGAC+TGG | - | chr5.1:52742883-52742902 | MS.gene43658:intron | 40.0% | |
| ATGCCCACTTTGCAATACAA+GGG | - | chr5.1:52742926-52742945 | MS.gene43658:intron | 40.0% | |
| ATGCCCTTGTATTGCAAAGT+GGG | + | chr5.1:52742932-52742951 | None:intergenic | 40.0% | |
| CATCTTCCACAACCGATTAA+TGG | - | chr5.1:52742337-52742356 | MS.gene43658:intron | 40.0% | |
| CATTAATCGGTTGTGGAAGA+TGG | + | chr5.1:52742339-52742358 | None:intergenic | 40.0% | |
| CGTCGTGATGATCTTGAATT+TGG | - | chr5.1:52742596-52742615 | MS.gene43658:CDS | 40.0% | |
| GCTGCATTTGTCTGGTAATT+AGG | - | chr5.1:52742648-52742667 | MS.gene43658:intron | 40.0% | |
| GGATCATCTTCAAATAGCTC+TGG | + | chr5.1:52741602-52741621 | None:intergenic | 40.0% | |
| TATGCCCACTTTGCAATACA+AGG | - | chr5.1:52742925-52742944 | MS.gene43658:intron | 40.0% | |
| TATGCCCTTGTATTGCAAAG+TGG | + | chr5.1:52742933-52742952 | None:intergenic | 40.0% | |
| TCTGATCCTGAAAAACTCGT+TGG | + | chr5.1:52742285-52742304 | None:intergenic | 40.0% | |
| TGTTCAACAATCTGACCAAC+TGG | + | chr5.1:52741713-52741732 | None:intergenic | 40.0% | |
| TGTTGAAGATGGGGTAACAA+AGG | + | chr5.1:52742373-52742392 | None:intergenic | 40.0% | |
| TTTGACGTTCCCAAGCAATT+TGG | + | chr5.1:52742059-52742078 | None:intergenic | 40.0% | |
| TTTGGACCATTAATCGGTTG+TGG | + | chr5.1:52742346-52742365 | None:intergenic | 40.0% | |
| ! | TATTGGCCAACGAGTTTTTC+AGG | - | chr5.1:52742276-52742295 | MS.gene43658:intron | 40.0% |
| ! | TGCTTGCATCGATAATCCTT+TGG | - | chr5.1:52741483-52741502 | MS.gene43658:intron | 40.0% |
| ! | TGGGTCATGTGATTAGTTCA+TGG | - | chr5.1:52741258-52741277 | MS.gene43658:CDS | 40.0% |
| ! | TGTTCTTTTCTTACGGCCAA+AGG | + | chr5.1:52741502-52741521 | None:intergenic | 40.0% |
| !! | CAATTGTGTATTTTCGGGAC+TGG | + | chr5.1:52742627-52742646 | None:intergenic | 40.0% |
| !! | GGTTGGTTTGGACCATTAAT+CGG | + | chr5.1:52742352-52742371 | None:intergenic | 40.0% |
| !! | GTTTCTCTCACTTTAGGATC+AGG | + | chr5.1:52741782-52741801 | None:intergenic | 40.0% |
| !!! | ACGAGTTTTTCAGGATCAGA+CGG | - | chr5.1:52742285-52742304 | MS.gene43658:intron | 40.0% |
| ATGTCTCTAGGTCGAACTGA+AGG | - | chr5.1:52741527-52741546 | MS.gene43658:CDS | 45.0% | |
| CTTCTACTTTGCGTATCCAC+CGG | + | chr5.1:52742559-52742578 | None:intergenic | 45.0% | |
| GAAGATGGGGTAACAAAGGT+TGG | + | chr5.1:52742369-52742388 | None:intergenic | 45.0% | |
| GGCATACATTCCTTACAGCT+AGG | + | chr5.1:52742911-52742930 | None:intergenic | 45.0% | |
| GGCTGCAGAAACTTAACAAC+CGG | - | chr5.1:52742537-52742556 | MS.gene43658:CDS | 45.0% | |
| TGCAGAAACTTAACAACCGG+TGG | - | chr5.1:52742540-52742559 | MS.gene43658:CDS | 45.0% | |
| TGTCAGGAAAATTTGGCTGC+TGG | - | chr5.1:52742822-52742841 | MS.gene43658:intron | 45.0% | |
| ! | CTGCGACCTTAAAGGTTGAT+TGG | + | chr5.1:52742085-52742104 | None:intergenic | 45.0% |
| ! | TGGGGTAACAAAGGTTGGTT+TGG | + | chr5.1:52742364-52742383 | None:intergenic | 45.0% |
| !! | AATAGCTCTGGGTACATAGC+TGG | + | chr5.1:52741590-52741609 | None:intergenic | 45.0% |
| !! | CAATCAACCTTTAAGGTCGC+AGG | - | chr5.1:52742083-52742102 | MS.gene43658:intron | 45.0% |
| CCTTCGTCACATGCGTAAGT+CGG | - | chr5.1:52741670-52741689 | MS.gene43658:intron | 50.0% | |
| TTAAGTTTCTGCAGCCACCG+TGG | + | chr5.1:52742533-52742552 | None:intergenic | 50.0% | |
| ! | AAGACTGGCTCCTAGCTGTA+AGG | - | chr5.1:52742898-52742917 | MS.gene43658:intron | 50.0% |
| !! | GTGACGAAGGCGTTCTCTTT+CGG | + | chr5.1:52741660-52741679 | None:intergenic | 50.0% |
| CCGACTTACGCATGTGACGA+AGG | + | chr5.1:52741673-52741692 | None:intergenic | 55.0% | |
| ! | GCTCTGGGTACATAGCTGGA+AGG | + | chr5.1:52741586-52741605 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52741190 | 52742965 | 52741190 | ID=MS.gene43658 |
| chr5.1 | mRNA | 52741190 | 52742965 | 52741190 | ID=MS.gene43658.t1;Parent=MS.gene43658 |
| chr5.1 | exon | 52742953 | 52742965 | 52742953 | ID=MS.gene43658.t1.exon1;Parent=MS.gene43658.t1 |
| chr5.1 | CDS | 52742953 | 52742965 | 52742953 | ID=cds.MS.gene43658.t1;Parent=MS.gene43658.t1 |
| chr5.1 | exon | 52742341 | 52742642 | 52742341 | ID=MS.gene43658.t1.exon2;Parent=MS.gene43658.t1 |
| chr5.1 | CDS | 52742341 | 52742642 | 52742341 | ID=cds.MS.gene43658.t1;Parent=MS.gene43658.t1 |
| chr5.1 | exon | 52742051 | 52742101 | 52742051 | ID=MS.gene43658.t1.exon3;Parent=MS.gene43658.t1 |
| chr5.1 | CDS | 52742051 | 52742101 | 52742051 | ID=cds.MS.gene43658.t1;Parent=MS.gene43658.t1 |
| chr5.1 | exon | 52741738 | 52741857 | 52741738 | ID=MS.gene43658.t1.exon4;Parent=MS.gene43658.t1 |
| chr5.1 | CDS | 52741738 | 52741857 | 52741738 | ID=cds.MS.gene43658.t1;Parent=MS.gene43658.t1 |
| chr5.1 | exon | 52741494 | 52741625 | 52741494 | ID=MS.gene43658.t1.exon5;Parent=MS.gene43658.t1 |
| chr5.1 | CDS | 52741494 | 52741625 | 52741494 | ID=cds.MS.gene43658.t1;Parent=MS.gene43658.t1 |
| chr5.1 | exon | 52741190 | 52741327 | 52741190 | ID=MS.gene43658.t1.exon6;Parent=MS.gene43658.t1 |
| chr5.1 | CDS | 52741190 | 52741327 | 52741190 | ID=cds.MS.gene43658.t1;Parent=MS.gene43658.t1 |
| Gene Sequence |
| Protein sequence |
