Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44753.t1 | RHN44535.1 | 94.3 | 1044 | 60 | 0 | 1 | 1044 | 37 | 1080 | 0.00E+00 | 1804.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44753.t1 | Q8VWF8 | 73.7 | 854 | 215 | 4 | 192 | 1044 | 176 | 1020 | 0.0e+00 | 1292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44753.t1 | A0A396H096 | 94.3 | 1044 | 60 | 0 | 1 | 1044 | 37 | 1080 | 0.0e+00 | 1804.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene44753 | 0.844721 | 6.34E-59 | -1.69E-46 |
| MS.gene049824 | MS.gene44753 | 0.822634 | 2.13E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene44753 | 0.815736 | 7.93E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene44753 | 0.817839 | 2.68E-52 | -1.69E-46 |
| MS.gene04987 | MS.gene44753 | 0.808625 | 2.83E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene44753 | 0.800805 | 1.21E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene44753 | 0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene44753 | 0.836361 | 9.79E-57 | -1.69E-46 |
| MS.gene053294 | MS.gene44753 | 0.825744 | 3.97E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene44753 | 0.855511 | 6.01E-62 | -1.69E-46 |
| MS.gene056091 | MS.gene44753 | 0.827177 | 1.81E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene44753 | 0.800377 | 1.48E-48 | -1.69E-46 |
| MS.gene056605 | MS.gene44753 | 0.800122 | 1.67E-48 | -1.69E-46 |
| MS.gene057555 | MS.gene44753 | 0.82137 | 4.19E-53 | -1.69E-46 |
| MS.gene05953 | MS.gene44753 | 0.81381 | 2.12E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene44753 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene059935 | MS.gene44753 | 0.810163 | 1.32E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene44753 | 0.814391 | 1.58E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44753.t1 | MTR_7g017440 | 97.699 | 565 | 13 | 0 | 480 | 1044 | 2 | 566 | 0.0 | 1163 |
| MS.gene44753.t1 | MTR_8g065900 | 73.588 | 708 | 181 | 3 | 339 | 1044 | 24 | 727 | 0.0 | 1091 |
| MS.gene44753.t1 | MTR_8g065960 | 54.545 | 165 | 70 | 2 | 162 | 323 | 97 | 259 | 1.03e-49 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44753.t1 | AT5G15700 | 70.223 | 853 | 245 | 3 | 192 | 1044 | 168 | 1011 | 0.0 | 1279 |
| MS.gene44753.t1 | AT5G15700 | 69.647 | 850 | 248 | 4 | 192 | 1040 | 168 | 1008 | 0.0 | 1263 |
| MS.gene44753.t1 | AT1G68990 | 65.737 | 896 | 288 | 6 | 162 | 1044 | 87 | 976 | 0.0 | 1251 |
| MS.gene44753.t1 | AT1G68990 | 65.227 | 903 | 288 | 7 | 162 | 1044 | 87 | 983 | 0.0 | 1244 |
| MS.gene44753.t1 | AT2G24120 | 65.376 | 852 | 275 | 6 | 197 | 1044 | 158 | 993 | 0.0 | 1177 |
| MS.gene44753.t1 | AT2G24120 | 63.038 | 744 | 255 | 6 | 197 | 936 | 158 | 885 | 0.0 | 979 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGCTCTAATTGCTTTCT+AGG | 0.152818 | 7.4:+82701490 | None:intergenic |
| TGACTTCATGTAAGGCAAAT+TGG | 0.205615 | 7.4:+82706732 | None:intergenic |
| AGCTCGTCATGCAAAGATTT+TGG | 0.206895 | 7.4:-82696330 | MS.gene44753:CDS |
| TGTGACCCTCTAATTCTTAA+AGG | 0.217002 | 7.4:-82705153 | MS.gene44753:CDS |
| TTTCAGTTAGTTGAGAATTT+TGG | 0.235773 | 7.4:-82707270 | MS.gene44753:CDS |
| AAGCCGCTTGGTTGAACTTT+TGG | 0.249283 | 7.4:-82705418 | MS.gene44753:CDS |
| TCAAGAGTCGTTCCCATCTT+TGG | 0.261651 | 7.4:-82693879 | MS.gene44753:CDS |
| TACATGAAGTCATTGTTTCT+TGG | 0.266912 | 7.4:-82706721 | MS.gene44753:CDS |
| TCAAGTGAGTGAACAAAATT+TGG | 0.271509 | 7.4:+82694889 | None:intergenic |
| TTCTCAATTGCATCCCTTAG+AGG | 0.271883 | 7.4:+82706688 | None:intergenic |
| TGTAGCTTTGGGAAGGAAAA+TGG | 0.273345 | 7.4:-82707318 | MS.gene44753:CDS |
| TTACAACATTATGCTGCTTT+AGG | 0.281049 | 7.4:-82699867 | MS.gene44753:CDS |
| TGTCTAGGTGGATAGAAAAT+TGG | 0.287964 | 7.4:-82696100 | MS.gene44753:intron |
| CAAACCTTTACAGACTTGTT+TGG | 0.290650 | 7.4:+82707416 | None:intergenic |
| CACACCTTTGTCTTCATAAC+TGG | 0.294324 | 7.4:+82705532 | None:intergenic |
| TTGGTTGGTTTGAGCCTCTA+AGG | 0.295476 | 7.4:-82706702 | MS.gene44753:CDS |
| GGTGACCTTAACCGCCTTAC+AGG | 0.310319 | 7.4:-82695855 | MS.gene44753:CDS |
| GCTGGTGGAGGCCGACTTGC+TGG | 0.312225 | 7.4:-82701264 | MS.gene44753:CDS |
| ATCTTTGCATGACGAGCTTC+AGG | 0.313166 | 7.4:+82696335 | None:intergenic |
| TGGAGGCCGACTTGCTGGTT+TGG | 0.328226 | 7.4:-82701259 | MS.gene44753:CDS |
| CAGAGAAAAGGAAGTGGAAA+TGG | 0.334572 | 7.4:-82700997 | MS.gene44753:CDS |
| GGACGTCCTCTTGGAAAATC+TGG | 0.335188 | 7.4:-82700679 | MS.gene44753:CDS |
| GGTTAGAATACACAAGTTCT+TGG | 0.342488 | 7.4:-82705731 | MS.gene44753:CDS |
| CATCTCCTGTAAGGCGGTTA+AGG | 0.349958 | 7.4:+82695850 | None:intergenic |
| ATACTCTCGGGAATACAAAA+TGG | 0.353108 | 7.4:-82701329 | MS.gene44753:CDS |
| CAGTATCAGTTGAAGAAATA+TGG | 0.353263 | 7.4:+82693800 | None:intergenic |
| TAAAGAGTTGTTGGAGGAGA+TGG | 0.356164 | 7.4:-82707049 | MS.gene44753:CDS |
| GCAATTAGAGCCTGTATTTG+AGG | 0.363031 | 7.4:-82701482 | MS.gene44753:intron |
| ATACACTTGGCAAATCTATA+TGG | 0.364455 | 7.4:-82700640 | MS.gene44753:CDS |
| GTTCCACCGGTCAATTGGTC+AGG | 0.368874 | 7.4:-82702997 | MS.gene44753:CDS |
| GCAGATGATTCAGAGCTCTT+TGG | 0.372941 | 7.4:-82695985 | MS.gene44753:CDS |
| TAGGGGTCCATGATTCATAT+TGG | 0.379140 | 7.4:-82694565 | MS.gene44753:CDS |
| CAGAAGCTTGCTGCAGTAAG+AGG | 0.381985 | 7.4:-82705592 | MS.gene44753:CDS |
| TCAGTGTTGTGGATAGGATA+TGG | 0.385606 | 7.4:-82701287 | MS.gene44753:CDS |
| AGATGTATGCCGAGGAATAT+TGG | 0.388150 | 7.4:-82700713 | MS.gene44753:CDS |
| GTGACCCTCTAATTCTTAAA+GGG | 0.389444 | 7.4:-82705152 | MS.gene44753:CDS |
| CGAAATTAACGAGTTGTTGA+AGG | 0.392287 | 7.4:-82706929 | MS.gene44753:CDS |
| GGAACAACCATAGGCATATA+AGG | 0.393554 | 7.4:+82703015 | None:intergenic |
| TCGTTAATTTCGTCATCAAC+CGG | 0.395786 | 7.4:+82706940 | None:intergenic |
| ATCTGTGAAGAAAGAGAATA+GGG | 0.398187 | 7.4:-82700966 | MS.gene44753:CDS |
| GACTTCATGTAAGGCAAATT+GGG | 0.399449 | 7.4:+82706733 | None:intergenic |
| GCTGCTGTCAATCTAGTTGC+AGG | 0.402450 | 7.4:-82698611 | MS.gene44753:CDS |
| GAGCAAGAGATGTATCGAAA+TGG | 0.408230 | 7.4:-82706664 | MS.gene44753:CDS |
| ATTGTCATAAATTACCTTGT+CGG | 0.414498 | 7.4:+82695379 | None:intergenic |
| TCAAGCCCTTTAAGAATTAG+AGG | 0.415223 | 7.4:+82705147 | None:intergenic |
| AATCTGTGAAGAAAGAGAAT+AGG | 0.415826 | 7.4:-82700967 | MS.gene44753:CDS |
| CATCCACACTTAAATCATCT+TGG | 0.420358 | 7.4:-82700739 | MS.gene44753:CDS |
| TCATGCATGCAGCTAAGAAC+TGG | 0.425311 | 7.4:+82700488 | None:intergenic |
| CACCTACACTGCACACGGCC+TGG | 0.428511 | 7.4:+82706506 | None:intergenic |
| GAAGAGAGGAAGCAGAATGC+TGG | 0.433295 | 7.4:-82706895 | MS.gene44753:CDS |
| TGAAGTCATTGTTTCTTGGT+TGG | 0.435566 | 7.4:-82706717 | MS.gene44753:CDS |
| TGATGAAATTAAAGAGTTGT+TGG | 0.436703 | 7.4:-82707058 | MS.gene44753:CDS |
| TTTGGCAGAGGGGAAATATA+AGG | 0.437602 | 7.4:-82706857 | MS.gene44753:CDS |
| TCTTATCTAAACAGGAAAAC+AGG | 0.437890 | 7.4:-82705198 | MS.gene44753:intron |
| TTTGCAGATGGACGTCCTCT+TGG | 0.440912 | 7.4:-82700688 | MS.gene44753:CDS |
| ACAAATGCAGGACGGATATC+AGG | 0.445370 | 7.4:+82705333 | None:intergenic |
| CAGGCTCTAATTGCTTTCTA+GGG | 0.447162 | 7.4:+82701491 | None:intergenic |
| GGTCATTCCTTATATGCCTA+TGG | 0.447250 | 7.4:-82703022 | MS.gene44753:CDS |
| TGGGTTCAAGTGGCATGGTT+TGG | 0.449115 | 7.4:-82706875 | MS.gene44753:CDS |
| GACTGCGATTGCCTGCAAAA+AGG | 0.449861 | 7.4:-82694848 | MS.gene44753:CDS |
| AAATCTAAGTCTCCACGTTC+AGG | 0.450684 | 7.4:+82693842 | None:intergenic |
| TCGTCAGTTTCTAGCTCCTC+AGG | 0.450905 | 7.4:+82701025 | None:intergenic |
| GATGAAAATACCTGATGTAC+TGG | 0.452909 | 7.4:+82700412 | None:intergenic |
| TGATTCTGCTGAACAACCTA+TGG | 0.453658 | 7.4:-82700548 | MS.gene44753:CDS |
| AGATGGAGAGAGAAGATAAG+AGG | 0.456540 | 7.4:-82707032 | MS.gene44753:CDS |
| AGCAAGAGATGTATCGAAAT+GGG | 0.460164 | 7.4:-82706663 | MS.gene44753:CDS |
| CTATCTCACCTCTTGCTCAA+TGG | 0.461102 | 7.4:+82706480 | None:intergenic |
| ACGTGGAGACTTAGATTTGA+AGG | 0.462465 | 7.4:-82693837 | MS.gene44753:CDS |
| TTGATGGCAGGAAGTGAGAA+AGG | 0.463723 | 7.4:-82706553 | MS.gene44753:CDS |
| TGGTTGTTCCACCGGTCAAT+TGG | 0.464177 | 7.4:-82703002 | MS.gene44753:CDS |
| GTCTTCATAACTGGTCCCCA+TGG | 0.464691 | 7.4:+82705541 | None:intergenic |
| TGGCACTGCTAGGGTTGTCC+AGG | 0.465829 | 7.4:-82706524 | MS.gene44753:CDS |
| TCAGTTGCCATCTGATAAGA+TGG | 0.465884 | 7.4:-82706608 | MS.gene44753:CDS |
| TGATCTGATTCTGATTCTGC+TGG | 0.466017 | 7.4:+82705372 | None:intergenic |
| ATCACATATTCCAGTACATC+AGG | 0.466402 | 7.4:-82700422 | MS.gene44753:intron |
| CCCCTAAAATCAAGGTTATG+TGG | 0.472003 | 7.4:+82700778 | None:intergenic |
| TCCTATGTCATGCGTACTCA+TGG | 0.476825 | 7.4:-82701547 | MS.gene44753:CDS |
| TAAGTCTCCACGTTCAGGTA+AGG | 0.476894 | 7.4:+82693847 | None:intergenic |
| TAAATTCAGACCTCAAATAC+AGG | 0.477743 | 7.4:+82701472 | None:intergenic |
| TAAGATGATGGCATTGTTGA+TGG | 0.483557 | 7.4:-82706569 | MS.gene44753:CDS |
| TCATAGGATGGCTCTTGCAA+TGG | 0.485225 | 7.4:-82699891 | MS.gene44753:intron |
| CTGACGATGAAGCAGAGAAA+AGG | 0.485306 | 7.4:-82701009 | MS.gene44753:CDS |
| CGTGCGTCCAATATGAATCA+TGG | 0.486009 | 7.4:+82694558 | None:intergenic |
| TGGTTGGTTTGAGCCTCTAA+GGG | 0.486956 | 7.4:-82706701 | MS.gene44753:CDS |
| TTGGAAAATCTGGTTTGCAC+TGG | 0.487172 | 7.4:-82700669 | MS.gene44753:CDS |
| GTGTGTTGGACCACTCCTCT+TGG | 0.488274 | 7.4:-82695594 | MS.gene44753:CDS |
| GCCTTACAGGAGATGTTTGA+AGG | 0.489071 | 7.4:-82695842 | MS.gene44753:CDS |
| TGAGTCCACTGAAGTCATAA+AGG | 0.489428 | 7.4:-82705659 | MS.gene44753:CDS |
| TTGTTCGCAATTTGATGCAA+AGG | 0.489673 | 7.4:-82707238 | MS.gene44753:CDS |
| TGCTGCTTGTTATGCTGCAA+AGG | 0.490652 | 7.4:-82695962 | MS.gene44753:intron |
| AGAAACAATGACTTCATGTA+AGG | 0.491431 | 7.4:+82706724 | None:intergenic |
| GTTTCCAAACAAGTCTGTAA+AGG | 0.491895 | 7.4:-82707420 | MS.gene44753:CDS |
| AGGAAAACAGGCAGAAAATA+CGG | 0.499883 | 7.4:-82705186 | MS.gene44753:CDS |
| AAGAGAGGAAGCAGAATGCT+GGG | 0.500594 | 7.4:-82706894 | MS.gene44753:CDS |
| CAAGTGGCATGGTTTGGCAG+AGG | 0.500667 | 7.4:-82706869 | MS.gene44753:CDS |
| TGTTTCTTCTACTGATGTTG+AGG | 0.501090 | 7.4:-82707193 | MS.gene44753:CDS |
| TATGCCTATGGTTGTTCCAC+CGG | 0.502178 | 7.4:-82703010 | MS.gene44753:CDS |
| CTAAATGAATGCACAAATGC+AGG | 0.505958 | 7.4:+82705321 | None:intergenic |
| TGAAATTAAAGAGTTGTTGG+AGG | 0.506233 | 7.4:-82707055 | MS.gene44753:CDS |
| AAGGGTGGAAATTCCAAAGA+TGG | 0.506458 | 7.4:+82693866 | None:intergenic |
| TTCATTTAGAACGATGAAAG+AGG | 0.509193 | 7.4:-82705307 | MS.gene44753:CDS |
| AGGCCGACTTGCTGGTTTGG+TGG | 0.510239 | 7.4:-82701256 | MS.gene44753:CDS |
| CGTTAATTTCGTCATCAACC+GGG | 0.510497 | 7.4:+82706941 | None:intergenic |
| GATGGCAACTGAAGAAAGTA+AGG | 0.511997 | 7.4:+82706619 | None:intergenic |
| CAGTGTTGTGGATAGGATAT+GGG | 0.513617 | 7.4:-82701286 | MS.gene44753:CDS |
| TTCTTCCTTTATGACTTCAG+TGG | 0.514403 | 7.4:+82705654 | None:intergenic |
| GTGCACGAAGTATCATGAAC+TGG | 0.515680 | 7.4:-82695820 | MS.gene44753:CDS |
| GTGCAACCTTACCGCTATCA+AGG | 0.516180 | 7.4:-82695561 | MS.gene44753:CDS |
| ACCTTCAAACATCTCCTGTA+AGG | 0.517660 | 7.4:+82695841 | None:intergenic |
| GATTAGGCTCTGGATACTCT+CGG | 0.523001 | 7.4:-82701342 | MS.gene44753:intron |
| AAGGATTCGTTGGCACTGCT+AGG | 0.525342 | 7.4:-82706534 | MS.gene44753:CDS |
| AATTACTATGCATAAGATGA+TGG | 0.525392 | 7.4:-82706581 | MS.gene44753:CDS |
| TAGCGGTAAGGTTGCACCAC+AGG | 0.526384 | 7.4:+82695567 | None:intergenic |
| TGTTCGCAATTTGATGCAAA+GGG | 0.526461 | 7.4:-82707237 | MS.gene44753:CDS |
| ACGGTGATGACATCAGTTTA+CGG | 0.527119 | 7.4:-82696069 | MS.gene44753:CDS |
| TTTGAGAGAAAACAAGAGGT+GGG | 0.534789 | 7.4:+82707373 | None:intergenic |
| AGGATTCGTTGGCACTGCTA+GGG | 0.536168 | 7.4:-82706533 | MS.gene44753:CDS |
| TCTGTAAAGGTTTGTTACGT+CGG | 0.536865 | 7.4:-82707407 | MS.gene44753:CDS |
| GTTGATAAACTATCAAATGA+AGG | 0.537392 | 7.4:-82700610 | MS.gene44753:CDS |
| GATAGGATATGGGCTGGTGG+AGG | 0.538764 | 7.4:-82701276 | MS.gene44753:CDS |
| AGGAGATGAAGAGAGAAGAG+AGG | 0.540461 | 7.4:-82706909 | MS.gene44753:CDS |
| AACAAAATTTGGCGGAAATG+CGG | 0.541188 | 7.4:+82694900 | None:intergenic |
| AATCGATGCTCAGAAAGATC+CGG | 0.543189 | 7.4:-82696366 | MS.gene44753:CDS |
| AAGTCTCCACGTTCAGGTAA+GGG | 0.544056 | 7.4:+82693848 | None:intergenic |
| TGCAGTAAGAGGAATATTGA+AGG | 0.546670 | 7.4:-82705581 | MS.gene44753:CDS |
| GAAGCCAGCTGATGTTTACT+CGG | 0.548235 | 7.4:-82698585 | MS.gene44753:CDS |
| CATGCAGCTAAGAACTGGAA+TGG | 0.552093 | 7.4:+82700493 | None:intergenic |
| TGAAGATTGAGACTGAACTT+TGG | 0.553495 | 7.4:-82706816 | MS.gene44753:CDS |
| TAACAAGGTGCTCAGTGTTG+TGG | 0.553805 | 7.4:-82701298 | MS.gene44753:CDS |
| AAGTGGCATGGTTTGGCAGA+GGG | 0.555346 | 7.4:-82706868 | MS.gene44753:CDS |
| CACTCCTCTTGGACTTCCTG+TGG | 0.555604 | 7.4:-82695583 | MS.gene44753:CDS |
| TAGAAAATTGGTTAAGCAGA+CGG | 0.556508 | 7.4:-82696088 | MS.gene44753:CDS |
| AGGGGAAATATAAGGAGTTG+AGG | 0.558326 | 7.4:-82706849 | MS.gene44753:CDS |
| TCATACCCTGACCAATTGAC+CGG | 0.558437 | 7.4:+82702991 | None:intergenic |
| ATGATTTAAGTGTGGATGCA+TGG | 0.559183 | 7.4:+82700744 | None:intergenic |
| ATACCCGAGTAAACATCAGC+TGG | 0.559744 | 7.4:+82698581 | None:intergenic |
| TGCCTTCCTTGATAGCGGTA+AGG | 0.560205 | 7.4:+82695555 | None:intergenic |
| CTACTGATGTTGAGGATGAG+AGG | 0.562882 | 7.4:-82707185 | MS.gene44753:CDS |
| ATGCACGGCCCCTAAAATCA+AGG | 0.564863 | 7.4:+82700770 | None:intergenic |
| ATGAGTACGCATGACATAGG+AGG | 0.565026 | 7.4:+82701549 | None:intergenic |
| GGAATATTGGAATTTGCAGA+TGG | 0.565440 | 7.4:-82700700 | MS.gene44753:CDS |
| CTATGGAAGGGAGACGGTGG+TGG | 0.565686 | 7.4:-82700531 | MS.gene44753:CDS |
| TTTGGGAAGGAAAATGGAAG+TGG | 0.569126 | 7.4:-82707312 | MS.gene44753:CDS |
| AGCAGAATGCTGGGTTCAAG+TGG | 0.569157 | 7.4:-82706885 | MS.gene44753:CDS |
| ATGAAGCAGAGAAAAGGAAG+TGG | 0.569290 | 7.4:-82701003 | MS.gene44753:CDS |
| AGTGAGTGAACAAAATTTGG+CGG | 0.569833 | 7.4:+82694892 | None:intergenic |
| GCAGGTAGCACGTAAAATGA+AGG | 0.570674 | 7.4:-82700821 | MS.gene44753:intron |
| GTGGATAGGATATGGGCTGG+TGG | 0.571994 | 7.4:-82701279 | MS.gene44753:CDS |
| TGTATCGAAATGGGAAGAAG+AGG | 0.574216 | 7.4:-82706654 | MS.gene44753:CDS |
| ATTAGGCTCTGGATACTCTC+GGG | 0.574245 | 7.4:-82701341 | MS.gene44753:intron |
| CTGAAAATGAACCAGTGTGT+TGG | 0.574335 | 7.4:-82695608 | MS.gene44753:CDS |
| AGGTGCTCAGTGTTGTGGAT+AGG | 0.577161 | 7.4:-82701293 | MS.gene44753:CDS |
| TTCCACCGGTCAATTGGTCA+GGG | 0.577207 | 7.4:-82702996 | MS.gene44753:intron |
| GGAAGTGAGAAAGGATTCGT+TGG | 0.578399 | 7.4:-82706544 | MS.gene44753:CDS |
| CGAAGTATCATGAACTGGCT+TGG | 0.578975 | 7.4:-82695815 | MS.gene44753:CDS |
| CCCTAAAATCAAGGTTATGT+GGG | 0.579880 | 7.4:+82700779 | None:intergenic |
| ATGATGGCATTGTTGATGGC+AGG | 0.579899 | 7.4:-82706565 | MS.gene44753:CDS |
| CTGCAAATTCCAATATTCCT+CGG | 0.581745 | 7.4:+82700704 | None:intergenic |
| AGGTGATTCCATTGAGCAAG+AGG | 0.585709 | 7.4:-82706488 | MS.gene44753:intron |
| CCTTGATGATACAAAACCAT+GGG | 0.587642 | 7.4:-82705557 | MS.gene44753:CDS |
| AATGCTGGGTTCAAGTGGCA+TGG | 0.588175 | 7.4:-82706880 | MS.gene44753:CDS |
| GTTAATTTCGTCATCAACCG+GGG | 0.588801 | 7.4:+82706942 | None:intergenic |
| GTTGTGGATAGGATATGGGC+TGG | 0.590230 | 7.4:-82701282 | MS.gene44753:CDS |
| GGGTTATTCTAGTGTTGCTG+AGG | 0.590458 | 7.4:-82707217 | MS.gene44753:CDS |
| TGATTTAAGTGTGGATGCAT+GGG | 0.591026 | 7.4:+82700745 | None:intergenic |
| TGCACAGGTAGGAAGCCGCT+TGG | 0.591173 | 7.4:-82705430 | MS.gene44753:intron |
| TTGACCGGTGGAACAACCAT+AGG | 0.593689 | 7.4:+82703006 | None:intergenic |
| GTCCAGGCCGTGTGCAGTGT+AGG | 0.594765 | 7.4:-82706508 | MS.gene44753:CDS |
| TGTCACATACATTGGAGCAC+GGG | 0.596055 | 7.4:-82696046 | MS.gene44753:CDS |
| TCTGCTGAACAACCTATGGA+AGG | 0.596439 | 7.4:-82700544 | MS.gene44753:CDS |
| GGATATGTGTGAACAGAAGT+TGG | 0.597879 | 7.4:-82706758 | MS.gene44753:CDS |
| GAATCAGATCAGTCACAAGA+TGG | 0.598338 | 7.4:-82705360 | MS.gene44753:CDS |
| AACTTTGGCAAGAAGCTGCG+AGG | 0.599182 | 7.4:-82706801 | MS.gene44753:CDS |
| TCTGATTCTGATTCTGCTGG+CGG | 0.600012 | 7.4:+82705375 | None:intergenic |
| GTTTACGGTGTCACATACAT+TGG | 0.601503 | 7.4:-82696054 | MS.gene44753:CDS |
| AGGCTCTAATTGCTTTCTAG+GGG | 0.603058 | 7.4:+82701492 | None:intergenic |
| ATTACAGCCATCTTATCAGA+TGG | 0.603179 | 7.4:+82706601 | None:intergenic |
| ATATGTGATATAAATGACTC+TGG | 0.605499 | 7.4:+82700436 | None:intergenic |
| AACCTTACCGCTATCAAGGA+AGG | 0.605842 | 7.4:-82695557 | MS.gene44753:CDS |
| CTCTCGGGAATACAAAATGG+AGG | 0.608290 | 7.4:-82701326 | MS.gene44753:CDS |
| AGAGGAGTGGTCCAACACAC+TGG | 0.609454 | 7.4:+82695597 | None:intergenic |
| AGGGTGGAAATTCCAAAGAT+GGG | 0.609540 | 7.4:+82693867 | None:intergenic |
| CACCACCGTCTCCCTTCCAT+AGG | 0.611801 | 7.4:+82700532 | None:intergenic |
| AGTGGCATGGTTTGGCAGAG+GGG | 0.613800 | 7.4:-82706867 | MS.gene44753:CDS |
| GCATTTCATCAAACATGTGG+CGG | 0.613861 | 7.4:-82707446 | None:intergenic |
| CAAGCCCTTTAAGAATTAGA+GGG | 0.614217 | 7.4:+82705148 | None:intergenic |
| GGAATCACCTACACTGCACA+CGG | 0.614870 | 7.4:+82706501 | None:intergenic |
| TTTGTAGGTTGAAATTCCTG+AGG | 0.617422 | 7.4:-82701041 | MS.gene44753:intron |
| CTGCTGAACAACCTATGGAA+GGG | 0.617898 | 7.4:-82700543 | MS.gene44753:CDS |
| AAGCCAGCTGATGTTTACTC+GGG | 0.619354 | 7.4:-82698584 | MS.gene44753:CDS |
| TTTACTCGGGTATAGCAGCT+AGG | 0.619553 | 7.4:-82698571 | MS.gene44753:intron |
| GTGTCACATACATTGGAGCA+CGG | 0.625881 | 7.4:-82696047 | MS.gene44753:CDS |
| TCAGATCAGTCACAAGATGG+TGG | 0.627524 | 7.4:-82705357 | MS.gene44753:CDS |
| TGGAGTCAAGCAACAACGAG+AGG | 0.632411 | 7.4:-82701527 | MS.gene44753:CDS |
| GCAGTAAGAGGAATATTGAA+GGG | 0.633662 | 7.4:-82705580 | MS.gene44753:CDS |
| TCTCCACGTTCAGGTAAGGG+TGG | 0.633894 | 7.4:+82693851 | None:intergenic |
| ACTTTGGCAAGAAGCTGCGA+GGG | 0.634491 | 7.4:-82706800 | MS.gene44753:CDS |
| TATTGCAGGTCATGGTCAAG+CGG | 0.635992 | 7.4:-82694930 | MS.gene44753:intron |
| GCCTTGATGATACAAAACCA+TGG | 0.637164 | 7.4:-82705558 | MS.gene44753:CDS |
| CACAGGAAGTCCAAGAGGAG+TGG | 0.639013 | 7.4:+82695584 | None:intergenic |
| TCCATGAGTACGCATGACAT+AGG | 0.641022 | 7.4:+82701546 | None:intergenic |
| GAAAAGGAAGTGGAAATGGA+AGG | 0.642159 | 7.4:-82700993 | MS.gene44753:CDS |
| TTGGGAAGGAAAATGGAAGT+GGG | 0.645962 | 7.4:-82707311 | MS.gene44753:CDS |
| TGCACCACAGGAAGTCCAAG+AGG | 0.646359 | 7.4:+82695579 | None:intergenic |
| GCTTACTTCGACTGATGCAG+AGG | 0.646586 | 7.4:-82707103 | MS.gene44753:CDS |
| TACCCTGACCAATTGACCGG+TGG | 0.647824 | 7.4:+82702994 | None:intergenic |
| CAATATGCCTTCCTTGATAG+CGG | 0.647980 | 7.4:+82695550 | None:intergenic |
| CACGGGAACAGATAAAGAGA+AGG | 0.648861 | 7.4:-82696029 | MS.gene44753:CDS |
| TGAGTACGCATGACATAGGA+GGG | 0.649322 | 7.4:+82701550 | None:intergenic |
| TCTCGGGAATACAAAATGGA+GGG | 0.650415 | 7.4:-82701325 | MS.gene44753:CDS |
| TGCTGCTTTAGGAAGAGACA+AGG | 0.653323 | 7.4:-82699856 | MS.gene44753:intron |
| GCACTGGCTGAAGATACACT+TGG | 0.654832 | 7.4:-82700653 | MS.gene44753:CDS |
| AACAACCTATGGAAGGGAGA+CGG | 0.657035 | 7.4:-82700537 | MS.gene44753:CDS |
| ATGAATGCACAAATGCAGGA+CGG | 0.661737 | 7.4:+82705325 | None:intergenic |
| TTGGCAAATCTATATGGTGG+TGG | 0.662171 | 7.4:-82700634 | MS.gene44753:CDS |
| CACTTGGCAAATCTATATGG+TGG | 0.663601 | 7.4:-82700637 | MS.gene44753:CDS |
| TTCAAACATCTCCTGTAAGG+CGG | 0.669556 | 7.4:+82695844 | None:intergenic |
| GGTCCACCAAACCAGCAAGT+CGG | 0.670215 | 7.4:+82701253 | None:intergenic |
| GAACCAAAAGTTCAACCAAG+CGG | 0.670487 | 7.4:+82705415 | None:intergenic |
| TTTCCACCCTTACCTGAACG+TGG | 0.672956 | 7.4:-82693854 | MS.gene44753:CDS |
| AAAATGGAGGGTAAATAACA+AGG | 0.673818 | 7.4:-82701313 | MS.gene44753:CDS |
| CTTGGTTCAGATGTATGCCG+AGG | 0.677097 | 7.4:-82700721 | MS.gene44753:CDS |
| AACCTATGGAAGGGAGACGG+TGG | 0.677580 | 7.4:-82700534 | MS.gene44753:CDS |
| GAACCAAGATGATTTAAGTG+TGG | 0.679329 | 7.4:+82700736 | None:intergenic |
| TAGTTGAGCTTACATCATTG+CGG | 0.684560 | 7.4:+82701232 | None:intergenic |
| GTGGATGCATGGGATATGCA+CGG | 0.698824 | 7.4:+82700755 | None:intergenic |
| GGGACCAGTTATGAAGACAA+AGG | 0.702961 | 7.4:-82705536 | MS.gene44753:intron |
| GTGGGCGTGTGAATAAATCG+AGG | 0.739083 | 7.4:-82707293 | MS.gene44753:CDS |
| ATTGAAACGAGAAACCGACA+AGG | 0.751717 | 7.4:-82695393 | MS.gene44753:intron |
| CTTGATGATACAAAACCATG+GGG | 0.752427 | 7.4:-82705556 | MS.gene44753:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 82693805 | 82707454 | 82693805 | ID=MS.gene44753 |
| chr7.4 | mRNA | 82693805 | 82707454 | 82693805 | ID=MS.gene44753.t1;Parent=MS.gene44753 |
| chr7.4 | exon | 82706489 | 82707454 | 82706489 | ID=MS.gene44753.t1.exon1;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82706489 | 82707454 | 82706489 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82705537 | 82705752 | 82705537 | ID=MS.gene44753.t1.exon2;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82705537 | 82705752 | 82705537 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82705303 | 82705445 | 82705303 | ID=MS.gene44753.t1.exon3;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82705303 | 82705445 | 82705303 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82705140 | 82705206 | 82705140 | ID=MS.gene44753.t1.exon4;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82705140 | 82705206 | 82705140 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82702997 | 82703055 | 82702997 | ID=MS.gene44753.t1.exon5;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82702997 | 82703055 | 82702997 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82701483 | 82701600 | 82701483 | ID=MS.gene44753.t1.exon6;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82701483 | 82701600 | 82701483 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82701245 | 82701358 | 82701245 | ID=MS.gene44753.t1.exon7;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82701245 | 82701358 | 82701245 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82700925 | 82701056 | 82700925 | ID=MS.gene44753.t1.exon8;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82700925 | 82701056 | 82700925 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82700423 | 82700839 | 82700423 | ID=MS.gene44753.t1.exon9;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82700423 | 82700839 | 82700423 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82699857 | 82699907 | 82699857 | ID=MS.gene44753.t1.exon10;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82699857 | 82699907 | 82699857 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82698572 | 82698642 | 82698572 | ID=MS.gene44753.t1.exon11;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82698572 | 82698642 | 82698572 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82696322 | 82696406 | 82696322 | ID=MS.gene44753.t1.exon12;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82696322 | 82696406 | 82696322 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82695963 | 82696115 | 82695963 | ID=MS.gene44753.t1.exon13;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82695963 | 82696115 | 82695963 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82695802 | 82695876 | 82695802 | ID=MS.gene44753.t1.exon14;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82695802 | 82695876 | 82695802 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82695551 | 82695640 | 82695551 | ID=MS.gene44753.t1.exon15;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82695551 | 82695640 | 82695551 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82695394 | 82695441 | 82695394 | ID=MS.gene44753.t1.exon16;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82695394 | 82695441 | 82695394 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82694830 | 82694944 | 82694830 | ID=MS.gene44753.t1.exon17;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82694830 | 82694944 | 82694830 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82694481 | 82694584 | 82694481 | ID=MS.gene44753.t1.exon18;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82694481 | 82694584 | 82694481 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| chr7.4 | exon | 82693805 | 82693915 | 82693805 | ID=MS.gene44753.t1.exon19;Parent=MS.gene44753.t1 |
| chr7.4 | CDS | 82693805 | 82693915 | 82693805 | ID=cds.MS.gene44753.t1;Parent=MS.gene44753.t1 |
| Gene Sequence |
| Protein sequence |
