Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45151.t1 | XP_003613413.2 | 82.3 | 1039 | 183 | 1 | 253 | 1291 | 15 | 1052 | 0.00E+00 | 1627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45151.t1 | Q9LFS8 | 55.9 | 1038 | 458 | 0 | 253 | 1290 | 13 | 1050 | 0.0e+00 | 1089.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45151.t1 | G7K5K8 | 82.3 | 1039 | 183 | 1 | 253 | 1291 | 15 | 1052 | 0.0e+00 | 1627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043593 | MS.gene45151 | PPI |
| MS.gene064353 | MS.gene45151 | PPI |
| MS.gene035825 | MS.gene45151 | PPI |
| MS.gene73093 | MS.gene45151 | PPI |
| MS.gene035826 | MS.gene45151 | PPI |
| MS.gene064351 | MS.gene45151 | PPI |
| MS.gene035828 | MS.gene45151 | PPI |
| MS.gene99872 | MS.gene45151 | PPI |
| MS.gene043643 | MS.gene45151 | PPI |
| MS.gene043595 | MS.gene45151 | PPI |
| MS.gene043645 | MS.gene45151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45151.t1 | MTR_5g036370 | 92.012 | 1039 | 82 | 1 | 253 | 1291 | 15 | 1052 | 0.0 | 1959 |
| MS.gene45151.t1 | MTR_4g115050 | 81.250 | 1040 | 195 | 0 | 252 | 1291 | 2 | 1041 | 0.0 | 1707 |
| MS.gene45151.t1 | MTR_3g033470 | 81.136 | 1039 | 196 | 0 | 253 | 1291 | 14 | 1052 | 0.0 | 1696 |
| MS.gene45151.t1 | MTR_5g036330 | 95.436 | 241 | 11 | 0 | 1051 | 1291 | 1 | 241 | 1.37e-164 | 490 |
| MS.gene45151.t1 | MTR_5g036300 | 73.387 | 124 | 19 | 2 | 1151 | 1271 | 2 | 114 | 1.17e-49 | 171 |
| MS.gene45151.t1 | MTR_4g036760 | 21.810 | 1105 | 654 | 44 | 260 | 1243 | 22 | 1037 | 1.78e-22 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45151.t1 | AT5G15920 | 59.056 | 1038 | 425 | 0 | 253 | 1290 | 13 | 1050 | 0.0 | 1216 |
| MS.gene45151.t1 | AT3G47460 | 23.947 | 451 | 266 | 18 | 262 | 663 | 2 | 424 | 4.37e-11 | 68.2 |
| MS.gene45151.t1 | AT3G47460 | 23.947 | 451 | 266 | 18 | 262 | 663 | 2 | 424 | 5.79e-11 | 67.8 |
Find 250 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGGGAATTTCTAGTTTA+TGG | 0.067075 | 5.1:-26818420 | MS.gene45151:CDS |
| AACATCTTCCTTTCATTTAT+TGG | 0.110482 | 5.1:+26810626 | None:intergenic |
| GAATTCAACAAGGAGGTTTA+TGG | 0.219115 | 5.1:-26819829 | MS.gene45151:CDS |
| CCTTAACTTTAATTGCATTA+TGG | 0.223056 | 5.1:+26817607 | None:intergenic |
| TTACTTGCATTGCAAAATTC+TGG | 0.224907 | 5.1:-26819901 | MS.gene45151:CDS |
| TTGTATATTATCAGAGAAAA+TGG | 0.257427 | 5.1:-26810951 | MS.gene45151:intron |
| CTCCTTAGCTTCACGATATT+CGG | 0.257714 | 5.1:+26821851 | None:intergenic |
| ACATCTTCCTTTCATTTATT+GGG | 0.259944 | 5.1:+26810627 | None:intergenic |
| ATGTATACCTCGACTAAAAC+TGG | 0.260752 | 5.1:+26819805 | None:intergenic |
| AGGAAATATTGTGTCCAAAA+AGG | 0.267057 | 5.1:-26823351 | MS.gene45151:CDS |
| GTTAACTCCCGTGCAACTTC+TGG | 0.268408 | 5.1:-26822439 | MS.gene45151:CDS |
| AGTACTCACTGTGGTGTATT+TGG | 0.268532 | 5.1:+26810575 | None:intergenic |
| GCCAATATTGAAGCTGATTC+TGG | 0.274003 | 5.1:-26828091 | MS.gene45151:CDS |
| ATCTTCATGCTGCTTCAAAT+TGG | 0.275044 | 5.1:+26814545 | None:intergenic |
| CCTCGGTTGAATCTTGTAAT+TGG | 0.281754 | 5.1:-26823915 | MS.gene45151:CDS |
| GAGCAGGATGATTTAGATAC+TGG | 0.281971 | 5.1:-26817678 | MS.gene45151:CDS |
| AAACTAGAAATTCCCAAGTT+TGG | 0.284443 | 5.1:+26818424 | None:intergenic |
| TAATAATTTGTTAGCCTTCT+CGG | 0.291677 | 5.1:+26821803 | None:intergenic |
| GCTTCAATATTGGCAGCTTC+AGG | 0.321839 | 5.1:+26828100 | None:intergenic |
| GTAATTGGTCCCAATGGTTC+TGG | 0.325831 | 5.1:-26823900 | MS.gene45151:CDS |
| TCATCTCCTTGTTGCTGAAT+AGG | 0.327750 | 5.1:+26826567 | None:intergenic |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 5.1:+26823297 | None:intergenic |
| CCTGTCTTTGCAATTCTTCA+AGG | 0.332234 | 5.1:+26820044 | None:intergenic |
| CTTGTATGTGCTATTGCTCT+TGG | 0.333455 | 5.1:-26823867 | MS.gene45151:CDS |
| GATATGGACTATGATCAATT+TGG | 0.340290 | 5.1:-26811791 | MS.gene45151:CDS |
| CACCAGAAAATCACTATTAC+TGG | 0.367078 | 5.1:-26818396 | MS.gene45151:CDS |
| ATAAACGAGAAGCAATAATT+AGG | 0.367459 | 5.1:-26817840 | MS.gene45151:CDS |
| TGGCCTGTGCGGCGAGCCTC+AGG | 0.370803 | 5.1:-26823847 | MS.gene45151:intron |
| ATCTCATCAACAACTCTAAA+GGG | 0.372731 | 5.1:+26810747 | None:intergenic |
| GAAATTTCTGCTAATGAAGT+TGG | 0.372849 | 5.1:-26820114 | MS.gene45151:CDS |
| AGCCGTTGAGGTTCCAAACT+TGG | 0.377273 | 5.1:-26818437 | MS.gene45151:CDS |
| TTGCCGGTAACTGAGGTAAA+TGG | 0.378152 | 5.1:+26830844 | None:intergenic |
| TACAAAGTGTCGTGCTGAAT+TGG | 0.382540 | 5.1:-26812895 | MS.gene45151:CDS |
| TTCCTCAGATGAGCATGATA+TGG | 0.383274 | 5.1:-26811807 | MS.gene45151:intron |
| GCCAGAATCAGCTTCAATAT+TGG | 0.384611 | 5.1:+26828090 | None:intergenic |
| TACTTATAAAAGTCAAATTC+AGG | 0.384789 | 5.1:-26811766 | MS.gene45151:intron |
| TCTAGCTCTATAATGTTTCC+AGG | 0.386752 | 5.1:+26823984 | None:intergenic |
| CCATAATGCAATTAAAGTTA+AGG | 0.386870 | 5.1:-26817607 | MS.gene45151:intron |
| TGCTGAATTGGAAACCATTA+AGG | 0.388459 | 5.1:-26812883 | MS.gene45151:intron |
| TACTTGCATTGCAAAATTCT+GGG | 0.388965 | 5.1:-26819900 | MS.gene45151:CDS |
| GTTAGCAAAGCTTGCTGATC+AGG | 0.389194 | 5.1:-26817655 | MS.gene45151:CDS |
| TTTCAGAAGGCTCTCTTTGT+TGG | 0.391226 | 5.1:+26818826 | None:intergenic |
| TTCAAGAACAAATTGCTTCC+CGG | 0.391298 | 5.1:-26818149 | MS.gene45151:CDS |
| TCACCATTTACCTCAGTTAC+CGG | 0.392804 | 5.1:-26830847 | MS.gene45151:CDS |
| ATACTATTCACTAGAAGTTT+CGG | 0.395851 | 5.1:+26818319 | None:intergenic |
| TTTCAACAGATGGCTGTTGC+CGG | 0.399444 | 5.1:-26811917 | MS.gene45151:CDS |
| TACTGGTCGAAGTCTAGATA+TGG | 0.407251 | 5.1:-26818379 | MS.gene45151:CDS |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 5.1:+26810389 | None:intergenic |
| CCGAATGATCAAGTTTAGAT+TGG | 0.407807 | 5.1:+26818637 | None:intergenic |
| CCAATCTAAACTTGATCATT+CGG | 0.408806 | 5.1:-26818637 | MS.gene45151:intron |
| CGACCAGTATAATTTAAAAC+TGG | 0.411645 | 5.1:+26818855 | None:intergenic |
| CCACATTAAGATTACCATAA+GGG | 0.413505 | 5.1:-26823679 | MS.gene45151:CDS |
| TGCAGATCTGGTAACAGCTT+TGG | 0.415021 | 5.1:+26810401 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 5.1:-26819663 | MS.gene45151:CDS |
| CAACCTGAGGCTCGCCGCAC+AGG | 0.416219 | 5.1:+26823844 | None:intergenic |
| TATGAGAAATTACCCTTTGA+GGG | 0.418707 | 5.1:+26810323 | None:intergenic |
| AAATTTGGTCCAAACGGAAA+TGG | 0.420361 | 5.1:+26818697 | None:intergenic |
| TCATCCGTGGGAGGTACATA+AGG | 0.425803 | 5.1:+26820946 | None:intergenic |
| TTGTAAAATTTGCAGGTTGA+AGG | 0.428383 | 5.1:-26819950 | MS.gene45151:intron |
| CTCAGTGCCCATCATCAATC+TGG | 0.429551 | 5.1:-26810915 | MS.gene45151:CDS |
| GTGAAGGAGGGAGAAGAGTC+TGG | 0.430412 | 5.1:-26823702 | MS.gene45151:CDS |
| TATTTAGCATGAGACTGATC+TGG | 0.433236 | 5.1:+26819694 | None:intergenic |
| TTACCTTTGCAGCAAATTCA+AGG | 0.435181 | 5.1:+26817227 | None:intergenic |
| ATTGTCACTATCAGTGTATC+TGG | 0.436408 | 5.1:+26826497 | None:intergenic |
| AACACCTCCTTGACAGCATC+AGG | 0.438128 | 5.1:+26818666 | None:intergenic |
| TGTAAATCAGCCTGGGCTGC+TGG | 0.439781 | 5.1:-26810236 | MS.gene45151:intron |
| GATTCATTTGTAGATGAAGA+TGG | 0.440415 | 5.1:+26826642 | None:intergenic |
| GGACGAGGTTCCGCCATTGC+CGG | 0.441970 | 5.1:+26830828 | None:intergenic |
| TCACATATTGCAACAATATG+AGG | 0.445148 | 5.1:-26813045 | MS.gene45151:CDS |
| GAAGCAATAATTAGGCGTAT+TGG | 0.445971 | 5.1:-26817832 | MS.gene45151:intron |
| GTATGAGAAATTACCCTTTG+AGG | 0.445975 | 5.1:+26810322 | None:intergenic |
| TTTGTCTTCTAACTCTGTCT+CGG | 0.448750 | 5.1:+26826532 | None:intergenic |
| GAGAGATAAAGTTGTGGAGT+TGG | 0.449070 | 5.1:-26820136 | MS.gene45151:CDS |
| CCAACTTTGATTCCTACTCT+AGG | 0.451974 | 5.1:-26829380 | MS.gene45151:CDS |
| CAATAAGAAAAGCAGACTAT+TGG | 0.452805 | 5.1:-26821208 | MS.gene45151:CDS |
| TTCTGTAGGTCAGGTGTAAG+AGG | 0.453874 | 5.1:+26814341 | None:intergenic |
| GCGTGAGAAGACTGCTACAA+TGG | 0.455757 | 5.1:-26821829 | MS.gene45151:CDS |
| CTTGTTGAAGATGCGTGTTA+CGG | 0.456156 | 5.1:-26817280 | MS.gene45151:CDS |
| TTGTCTTCTAACTCTGTCTC+GGG | 0.456665 | 5.1:+26826533 | None:intergenic |
| GATGGACGAGTTGCGACAGC+AGG | 0.457394 | 5.1:-26821046 | MS.gene45151:CDS |
| CTGTTGTCACCTCTAATAAG+AGG | 0.457804 | 5.1:-26828051 | MS.gene45151:CDS |
| GATCTCATCAACAACTCTAA+AGG | 0.461058 | 5.1:+26810746 | None:intergenic |
| GCCACAAGATTTCTGAGAGT+TGG | 0.461741 | 5.1:+26811968 | None:intergenic |
| TGATGCTCCTGATGCTGTCA+AGG | 0.462891 | 5.1:-26818673 | MS.gene45151:CDS |
| GGGGAGGATGATTATATGCC+TGG | 0.464153 | 5.1:-26824002 | MS.gene45151:CDS |
| CGGACGAAGTTATGTTGTAC+AGG | 0.464754 | 5.1:-26817260 | MS.gene45151:CDS |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 5.1:-26813123 | MS.gene45151:CDS |
| GAAGATGGGACATCAACATT+AGG | 0.470969 | 5.1:+26826657 | None:intergenic |
| TTCAATTCAGTTTATTGGAT+CGG | 0.472681 | 5.1:-26818476 | MS.gene45151:intron |
| TCTTGGTATCCATTTCCGTT+TGG | 0.476435 | 5.1:-26818706 | MS.gene45151:CDS |
| TGGTGATCTGAACGGGACTC+TGG | 0.477370 | 5.1:-26831746 | MS.gene45151:CDS |
| AGAAATTCCTTCTGTAGGTC+AGG | 0.478076 | 5.1:+26814332 | None:intergenic |
| GAAAGTGATACTGAAATCAA+TGG | 0.478911 | 5.1:-26817703 | MS.gene45151:CDS |
| ACTGAAATCAATGGAAGAGC+AGG | 0.484741 | 5.1:-26817694 | MS.gene45151:CDS |
| AAGATGAGGAGAAAAGCTTA+AGG | 0.485886 | 5.1:-26818104 | MS.gene45151:CDS |
| ATGACGGTGGTGATCTGAAC+GGG | 0.488722 | 5.1:-26831753 | MS.gene45151:CDS |
| TCAAGAACAAATTGCTTCCC+GGG | 0.489449 | 5.1:-26818148 | MS.gene45151:CDS |
| AGGAACTTTAAATCAGTTGA+AGG | 0.489970 | 5.1:-26822227 | MS.gene45151:CDS |
| TATTGGCATTCTCGTTTAGT+CGG | 0.490880 | 5.1:+26821226 | None:intergenic |
| TTTGAGGGCTGCTCAATCCA+AGG | 0.490898 | 5.1:+26810338 | None:intergenic |
| AGAACTCTTTCCAGAACCAT+TGG | 0.490951 | 5.1:+26823890 | None:intergenic |
| ATTCATTTGTAGATGAAGAT+GGG | 0.492680 | 5.1:+26826643 | None:intergenic |
| GCCGTTGAGGTTCCAAACTT+GGG | 0.494349 | 5.1:-26818436 | MS.gene45151:CDS |
| CCTTGAAGAATTGCAAAGAC+AGG | 0.494479 | 5.1:-26820044 | MS.gene45151:intron |
| TTGGATGTTAAACCTCTGAA+TGG | 0.494697 | 5.1:+26823316 | None:intergenic |
| TAATCTGAGCTTCAAAGAAA+AGG | 0.494952 | 5.1:-26818175 | MS.gene45151:CDS |
| CCAACTTTGATTCCTACTCT+AGG | 0.496770 | 5.1:-26824456 | MS.gene45151:CDS |
| CCAACTTTGATTCCTACTCT+AGG | 0.496770 | 5.1:-26829349 | MS.gene45151:CDS |
| GCCACATTAAGATTACCATA+AGG | 0.497474 | 5.1:-26823680 | MS.gene45151:CDS |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 5.1:-26819672 | MS.gene45151:CDS |
| TTTCCTTGAATTTGCTGCAA+AGG | 0.501461 | 5.1:-26817230 | MS.gene45151:intron |
| AAGTTCTTCTGCAGGAAAAG+TGG | 0.503487 | 5.1:-26811994 | MS.gene45151:intron |
| TCTTACCAGATGCGAGCTCT+TGG | 0.503536 | 5.1:-26818723 | MS.gene45151:intron |
| CCAAGCGCCCTAAAATTACA+AGG | 0.507582 | 5.1:-26830803 | MS.gene45151:intron |
| GGCAGTTTGTAAGATCTTGA+AGG | 0.508877 | 5.1:+26810769 | None:intergenic |
| ACATCAACATTAGGAGCTGC+AGG | 0.509079 | 5.1:+26826666 | None:intergenic |
| CCTGGGCTGCTGGTGATCGA+TGG | 0.509140 | 5.1:-26810226 | MS.gene45151:CDS |
| TGGATTGAGCAGCCCTCAAA+GGG | 0.510730 | 5.1:-26810335 | MS.gene45151:intron |
| CCATCGATCACCAGCAGCCC+AGG | 0.511705 | 5.1:+26810226 | None:intergenic |
| AAGAGTGAAGGAATCAAAGT+TGG | 0.512999 | 5.1:+26824425 | None:intergenic |
| CCCGGGAGGAAAGTATCAAA+AGG | 0.514236 | 5.1:-26818131 | MS.gene45151:CDS |
| AAGTTATGTTGTACAGGGAA+TGG | 0.514733 | 5.1:-26817254 | MS.gene45151:CDS |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 5.1:+26813122 | None:intergenic |
| TGCACTATCTGTTGCACAAG+AGG | 0.516684 | 5.1:-26826463 | MS.gene45151:intron |
| GGTCTCTTCCAGAAGTTGCA+CGG | 0.517180 | 5.1:+26822431 | None:intergenic |
| CATACCTAGTGAAACTTCTC+CGG | 0.519720 | 5.1:+26811898 | None:intergenic |
| AATCTTGTAATTGGTCCCAA+TGG | 0.520331 | 5.1:-26823906 | MS.gene45151:CDS |
| TGAATTCATGACGATGCGCT+TGG | 0.524274 | 5.1:+26819845 | None:intergenic |
| CATCCGTGGGAGGTACATAA+GGG | 0.526641 | 5.1:+26820947 | None:intergenic |
| ATTAGTGCACGATGTTGCTC+AGG | 0.529223 | 5.1:+26822381 | None:intergenic |
| TTTACCTCAGTTACCGGCAA+TGG | 0.531963 | 5.1:-26830841 | MS.gene45151:CDS |
| GTACCCCTCCAGATTGATGA+TGG | 0.532979 | 5.1:+26810907 | None:intergenic |
| GTCTCTTCCAGAAGTTGCAC+GGG | 0.533502 | 5.1:+26822432 | None:intergenic |
| TCACTATCAGTGTATCTGGC+TGG | 0.535476 | 5.1:+26826501 | None:intergenic |
| AAAACTTGACACGGACAAGA+AGG | 0.536122 | 5.1:-26812922 | MS.gene45151:CDS |
| GAACTCTTTCCAGAACCATT+GGG | 0.536149 | 5.1:+26823891 | None:intergenic |
| TTAGGGCGCTTGGGTGGACG+AGG | 0.537742 | 5.1:+26830813 | None:intergenic |
| ACAAGATTCAACCGAGGACC+AGG | 0.537844 | 5.1:+26823921 | None:intergenic |
| AGCAGGATGATTTAGATACT+GGG | 0.542003 | 5.1:-26817677 | MS.gene45151:CDS |
| CCTAGAGTAGGAATCAAAGT+TGG | 0.543013 | 5.1:+26829380 | None:intergenic |
| ATTTAGCATGAGACTGATCT+GGG | 0.545071 | 5.1:+26819695 | None:intergenic |
| CACAAAATTTGCAACACGCG+TGG | 0.546859 | 5.1:+26823722 | None:intergenic |
| CACATTAAGATTACCATAAG+GGG | 0.548656 | 5.1:-26823678 | MS.gene45151:CDS |
| TTGGATTGAGCAGCCCTCAA+AGG | 0.549843 | 5.1:-26810336 | MS.gene45151:CDS |
| TGATTCCTACTCTAGGTGGA+TGG | 0.550301 | 5.1:-26824449 | MS.gene45151:CDS |
| TGATTCCTACTCTAGGTGGA+TGG | 0.550301 | 5.1:-26824480 | MS.gene45151:intron |
| TGATTCCTACTCTAGGTGGA+TGG | 0.550301 | 5.1:-26829342 | MS.gene45151:intron |
| TGATTCCTACTCTAGGTGGA+TGG | 0.550301 | 5.1:-26829373 | MS.gene45151:CDS |
| GTTTACGAAGATTAGCAGCC+TGG | 0.552178 | 5.1:+26818079 | None:intergenic |
| TTGGCAGCTTCAGGAGATTG+TGG | 0.552240 | 5.1:+26828109 | None:intergenic |
| TCTGTAGGTCAGGTGTAAGA+GGG | 0.552413 | 5.1:+26814342 | None:intergenic |
| TCCAACTCTCAGAAATCTTG+TGG | 0.553001 | 5.1:-26811969 | MS.gene45151:CDS |
| ATTGGAGAAAGAGAGCCAAT+TGG | 0.554157 | 5.1:-26821190 | MS.gene45151:intron |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 5.1:-26810355 | MS.gene45151:CDS |
| GTAGATGCCTACTACAATTG+AGG | 0.555634 | 5.1:-26813129 | MS.gene45151:intron |
| ATGTGGTTTCTCTCAATCAC+CGG | 0.555917 | 5.1:-26831832 | MS.gene45151:CDS |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 5.1:-26810203 | MS.gene45151:CDS |
| AATCTCTTACTTAAGAGTGA+AGG | 0.558242 | 5.1:+26824413 | None:intergenic |
| TATCAAAAGGTTTCAAGATG+AGG | 0.558989 | 5.1:-26818118 | MS.gene45151:CDS |
| TTATAGGAAGTGGAATTACA+AGG | 0.560138 | 5.1:-26821081 | MS.gene45151:intron |
| GCAGAGTACTAGCGAGAAGG+TGG | 0.560965 | 5.1:-26826703 | MS.gene45151:CDS |
| GGCCGAATATCGTGAAGCTA+AGG | 0.561976 | 5.1:-26821853 | MS.gene45151:CDS |
| TAAACTTTGTTTCAGAGGGG+AGG | 0.562324 | 5.1:-26824018 | MS.gene45151:intron |
| TCCCAAGTTTGGAACCTCAA+CGG | 0.562662 | 5.1:+26818435 | None:intergenic |
| AAGACTGAGAGATAAAGTTG+TGG | 0.562781 | 5.1:-26820142 | MS.gene45151:CDS |
| TGATACTAGCGTATTTGTAA+AGG | 0.564370 | 5.1:+26830883 | None:intergenic |
| ACAAGGAAATTACAAAGAGA+TGG | 0.566474 | 5.1:-26821064 | MS.gene45151:CDS |
| GATTACCTAAAATGTAAACC+TGG | 0.566857 | 5.1:-26823939 | MS.gene45151:CDS |
| GTTGAAGTATGATATGAAGC+AGG | 0.567566 | 5.1:-26821874 | MS.gene45151:CDS |
| CCTACAGAAGGAATTTCTTG+AGG | 0.569225 | 5.1:-26814327 | MS.gene45151:intron |
| CCTAGAGTAGGAATCAAAGT+TGG | 0.570778 | 5.1:+26824456 | None:intergenic |
| CCTAGAGTAGGAATCAAAGT+TGG | 0.570778 | 5.1:+26829349 | None:intergenic |
| GCAGTTTGTAAGATCTTGAA+GGG | 0.571920 | 5.1:+26810770 | None:intergenic |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 5.1:-26810212 | MS.gene45151:CDS |
| TAAAATGTAAACCTGGTCCT+CGG | 0.575663 | 5.1:-26823932 | MS.gene45151:CDS |
| ACTTCTGGAAGAGACCGAAA+AGG | 0.576075 | 5.1:-26822424 | MS.gene45151:CDS |
| ACTTCAGGAGAAATTTCAGA+AGG | 0.576911 | 5.1:+26818813 | None:intergenic |
| GTTCGATGTGGTGGTGATGA+CGG | 0.577205 | 5.1:-26831769 | MS.gene45151:CDS |
| ACCTCAGTTACCGGCAATGG+CGG | 0.577367 | 5.1:-26830838 | MS.gene45151:CDS |
| AGCAGAAACTTAGAAAAGCT+AGG | 0.578280 | 5.1:-26821011 | MS.gene45151:CDS |
| TTGAGGGCTGCTCAATCCAA+GGG | 0.578825 | 5.1:+26810339 | None:intergenic |
| TTCATATCATACTTCAACCA+TGG | 0.579377 | 5.1:+26821879 | None:intergenic |
| CCTCAAGAAATTCCTTCTGT+AGG | 0.579781 | 5.1:+26814327 | None:intergenic |
| TGCTAATCTTCGTAAACAGA+AGG | 0.579946 | 5.1:-26818073 | MS.gene45151:intron |
| ATATGAGGATCGTCAAAGAC+AGG | 0.583532 | 5.1:-26813030 | MS.gene45151:intron |
| TACACTTACAATCTCATCCG+TGG | 0.584228 | 5.1:+26820933 | None:intergenic |
| GGATGGACCCAATAAATGAA+AGG | 0.587763 | 5.1:-26810634 | MS.gene45151:CDS |
| AAACTTGACACGGACAAGAA+GGG | 0.590843 | 5.1:-26812921 | MS.gene45151:CDS |
| ACATAATGCTGAATTAGAGA+TGG | 0.591305 | 5.1:-26822203 | MS.gene45151:CDS |
| GTCTCATGCTAAATATCTAG+AGG | 0.591424 | 5.1:-26819686 | MS.gene45151:CDS |
| ACTTGCATTGCAAAATTCTG+GGG | 0.592878 | 5.1:-26819899 | MS.gene45151:CDS |
| AAGAGATGAACTTCGTGCCA+AGG | 0.592884 | 5.1:-26822161 | MS.gene45151:intron |
| GCAGAAACTTAGAAAAGCTA+GGG | 0.593127 | 5.1:-26821010 | MS.gene45151:CDS |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 5.1:-26819659 | MS.gene45151:intron |
| CCCTTATGGTAATCTTAATG+TGG | 0.596841 | 5.1:+26823679 | None:intergenic |
| GGAGAAAAGCTTAAGGAACC+AGG | 0.597038 | 5.1:-26818097 | MS.gene45151:CDS |
| GAAGAGACCGAAAAGGCTGT+TGG | 0.597377 | 5.1:-26822417 | MS.gene45151:CDS |
| AACTGATCAGAAAGCCGTTG+AGG | 0.599760 | 5.1:-26818449 | MS.gene45151:CDS |
| CTGGCACATCATAATGTCGT+AGG | 0.602967 | 5.1:+26818874 | None:intergenic |
| TAATGGAAAAGAAATTGCCA+TGG | 0.607534 | 5.1:-26821896 | MS.gene45151:CDS |
| AGTGCCCATCATCAATCTGG+AGG | 0.608837 | 5.1:-26810912 | MS.gene45151:CDS |
| GTGCCCATCATCAATCTGGA+GGG | 0.610882 | 5.1:-26810911 | MS.gene45151:CDS |
| AACGGGACTCTGGCGACGAG+AGG | 0.611947 | 5.1:-26831736 | MS.gene45151:intron |
| GAAAGGTCACCATACTCGAT+AGG | 0.611961 | 5.1:+26821765 | None:intergenic |
| TTGTTGCTGAATAGGAGAAG+TGG | 0.612326 | 5.1:+26826575 | None:intergenic |
| GGACGAAGTTATGTTGTACA+GGG | 0.613180 | 5.1:-26817259 | MS.gene45151:CDS |
| TCATATTGTTGCAATATGTG+AGG | 0.613373 | 5.1:+26813047 | None:intergenic |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 5.1:-26810362 | MS.gene45151:CDS |
| CGATGTTGCTCAGGAAGCTG+TGG | 0.617771 | 5.1:+26822390 | None:intergenic |
| AAGGTGACCACTGTGGTCGC+CGG | 0.618300 | 5.1:+26831813 | None:intergenic |
| TCCGCCATTGCCGGTAACTG+AGG | 0.619892 | 5.1:+26830837 | None:intergenic |
| AAACCCTTATGTACCTCCCA+CGG | 0.624268 | 5.1:-26820950 | MS.gene45151:CDS |
| ATATCTGATGTTCGATGTGG+TGG | 0.624280 | 5.1:-26831778 | MS.gene45151:CDS |
| AACTCACAGACCCTGTCTTG+CGG | 0.625196 | 5.1:+26822468 | None:intergenic |
| TACCCCTCCAGATTGATGAT+GGG | 0.628595 | 5.1:+26810908 | None:intergenic |
| ACTTTGATTCCTACTCTAGG+TGG | 0.629744 | 5.1:-26824453 | MS.gene45151:CDS |
| ACTTTGATTCCTACTCTAGG+TGG | 0.629744 | 5.1:-26829346 | MS.gene45151:CDS |
| ACTTTGATTCCTACTCTAGG+TGG | 0.629744 | 5.1:-26829377 | MS.gene45151:CDS |
| TTGGACCATCCACCTAGAGT+AGG | 0.629848 | 5.1:+26824444 | None:intergenic |
| TTGGACCATCCACCTAGAGT+AGG | 0.629848 | 5.1:+26829337 | None:intergenic |
| TTGGACCATCCACCTAGAGT+AGG | 0.629848 | 5.1:+26829368 | None:intergenic |
| TGTATACCTCGACTAAAACT+GGG | 0.631176 | 5.1:+26819806 | None:intergenic |
| TGCCCATCATCAATCTGGAG+GGG | 0.633194 | 5.1:-26810910 | MS.gene45151:intron |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 5.1:-26810390 | MS.gene45151:CDS |
| TGCTACAATGGAATCCGAGA+AGG | 0.636514 | 5.1:-26821817 | MS.gene45151:CDS |
| ATATCAGCAGCAAGTCCGAA+TGG | 0.641621 | 5.1:-26823614 | MS.gene45151:CDS |
| TCTTACACCTGACCTACAGA+AGG | 0.643706 | 5.1:-26814339 | MS.gene45151:CDS |
| ACACTTACAATCTCATCCGT+GGG | 0.645301 | 5.1:+26820934 | None:intergenic |
| GTTGCCGGAGAAGTTTCACT+AGG | 0.647839 | 5.1:-26811902 | MS.gene45151:intron |
| TGCTCCTGATGCTGTCAAGG+AGG | 0.648261 | 5.1:-26818670 | MS.gene45151:CDS |
| GTTGTTGATGAGATCAACCA+AGG | 0.650633 | 5.1:-26810738 | MS.gene45151:intron |
| TCTGCAGAGTACTAGCGAGA+AGG | 0.654651 | 5.1:-26826706 | MS.gene45151:CDS |
| ATGTGGCTGAAACCATTCAG+AGG | 0.657774 | 5.1:-26823328 | MS.gene45151:CDS |
| ACATTAAGATTACCATAAGG+GGG | 0.660320 | 5.1:-26823677 | MS.gene45151:CDS |
| TCTCATGCTAAATATCTAGA+GGG | 0.663581 | 5.1:-26819685 | MS.gene45151:CDS |
| CTGTAGGTCAGGTGTAAGAG+GGG | 0.666378 | 5.1:+26814343 | None:intergenic |
| TCTCATCAACAACTCTAAAG+GGG | 0.673394 | 5.1:+26810748 | None:intergenic |
| TCAATCACCGGCGACCACAG+TGG | 0.677688 | 5.1:-26831820 | MS.gene45151:CDS |
| GATGACGGTGGTGATCTGAA+CGG | 0.682696 | 5.1:-26831754 | MS.gene45151:CDS |
| AGAACAAATTGCTTCCCGGG+AGG | 0.691838 | 5.1:-26818145 | MS.gene45151:CDS |
| ACTTCTCCTATTCAGCAACA+AGG | 0.692960 | 5.1:-26826573 | MS.gene45151:CDS |
| CATTAAGATTACCATAAGGG+GGG | 0.696374 | 5.1:-26823676 | MS.gene45151:CDS |
| CTTACAATCTCATCCGTGGG+AGG | 0.700808 | 5.1:+26820937 | None:intergenic |
| CGATGTGGTGGTGATGACGG+TGG | 0.706699 | 5.1:-26831766 | MS.gene45151:CDS |
| TCGTCATGAATTCAACAAGG+AGG | 0.707524 | 5.1:-26819836 | MS.gene45151:CDS |
| GCATCGTCATGAATTCAACA+AGG | 0.720677 | 5.1:-26819839 | MS.gene45151:CDS |
| GCTATTGCTCTTGGCCTGTG+CGG | 0.725524 | 5.1:-26823858 | MS.gene45151:CDS |
| AACATATCTGATGTTCGATG+TGG | 0.737135 | 5.1:-26831781 | MS.gene45151:CDS |
| CCAATTACAAGATTCAACCG+AGG | 0.759991 | 5.1:+26823915 | None:intergenic |
| GTTGAAGAAGGTGACCACTG+TGG | 0.760933 | 5.1:+26831806 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26810187 | 26831854 | 26810187 | ID=MS.gene45151 |
| chr5.1 | mRNA | 26810187 | 26831854 | 26810187 | ID=MS.gene45151.t1;Parent=MS.gene45151 |
| chr5.1 | exon | 26831737 | 26831854 | 26831737 | ID=MS.gene45151.t1.exon1;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26831737 | 26831854 | 26831737 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26830804 | 26830924 | 26830804 | ID=MS.gene45151.t1.exon2;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26830804 | 26830924 | 26830804 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26829343 | 26829412 | 26829343 | ID=MS.gene45151.t1.exon3;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26829343 | 26829412 | 26829343 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26828050 | 26828164 | 26828050 | ID=MS.gene45151.t1.exon4;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26828050 | 26828164 | 26828050 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26826464 | 26826732 | 26826464 | ID=MS.gene45151.t1.exon5;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26826464 | 26826732 | 26826464 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26824423 | 26824487 | 26824423 | ID=MS.gene45151.t1.exon6;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26824423 | 26824487 | 26824423 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26823848 | 26824025 | 26823848 | ID=MS.gene45151.t1.exon7;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26823848 | 26824025 | 26823848 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26823604 | 26823757 | 26823604 | ID=MS.gene45151.t1.exon8;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26823604 | 26823757 | 26823604 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26823298 | 26823371 | 26823298 | ID=MS.gene45151.t1.exon9;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26823298 | 26823371 | 26823298 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26822347 | 26822496 | 26822347 | ID=MS.gene45151.t1.exon10;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26822347 | 26822496 | 26822347 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26822162 | 26822266 | 26822162 | ID=MS.gene45151.t1.exon11;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26822162 | 26822266 | 26822162 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26821780 | 26821925 | 26821780 | ID=MS.gene45151.t1.exon12;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26821780 | 26821925 | 26821780 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26821191 | 26821302 | 26821191 | ID=MS.gene45151.t1.exon13;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26821191 | 26821302 | 26821191 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26820942 | 26821097 | 26820942 | ID=MS.gene45151.t1.exon14;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26820942 | 26821097 | 26820942 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26820045 | 26820166 | 26820045 | ID=MS.gene45151.t1.exon15;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26820045 | 26820166 | 26820045 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26819813 | 26819957 | 26819813 | ID=MS.gene45151.t1.exon16;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26819813 | 26819957 | 26819813 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26819660 | 26819725 | 26819660 | ID=MS.gene45151.t1.exon17;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26819660 | 26819725 | 26819660 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26818815 | 26818943 | 26818815 | ID=MS.gene45151.t1.exon18;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26818815 | 26818943 | 26818815 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26818638 | 26818736 | 26818638 | ID=MS.gene45151.t1.exon19;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26818638 | 26818736 | 26818638 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26818323 | 26818488 | 26818323 | ID=MS.gene45151.t1.exon20;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26818323 | 26818488 | 26818323 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26818074 | 26818219 | 26818074 | ID=MS.gene45151.t1.exon21;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26818074 | 26818219 | 26818074 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26817833 | 26817896 | 26817833 | ID=MS.gene45151.t1.exon22;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26817833 | 26817896 | 26817833 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26817608 | 26817732 | 26817608 | ID=MS.gene45151.t1.exon23;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26817608 | 26817732 | 26817608 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26817231 | 26817308 | 26817231 | ID=MS.gene45151.t1.exon24;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26817231 | 26817308 | 26817231 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26814511 | 26814583 | 26814511 | ID=MS.gene45151.t1.exon25;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26814511 | 26814583 | 26814511 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26814328 | 26814431 | 26814328 | ID=MS.gene45151.t1.exon26;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26814328 | 26814431 | 26814328 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26813031 | 26813147 | 26813031 | ID=MS.gene45151.t1.exon27;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26813031 | 26813147 | 26813031 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26812884 | 26812961 | 26812884 | ID=MS.gene45151.t1.exon28;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26812884 | 26812961 | 26812884 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26811903 | 26812002 | 26811903 | ID=MS.gene45151.t1.exon29;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26811903 | 26812002 | 26811903 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26811767 | 26811821 | 26811767 | ID=MS.gene45151.t1.exon30;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26811767 | 26811821 | 26811767 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26810911 | 26810959 | 26810911 | ID=MS.gene45151.t1.exon31;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26810911 | 26810959 | 26810911 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26810739 | 26810826 | 26810739 | ID=MS.gene45151.t1.exon32;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26810739 | 26810826 | 26810739 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26810584 | 26810656 | 26810584 | ID=MS.gene45151.t1.exon33;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26810584 | 26810656 | 26810584 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26810336 | 26810439 | 26810336 | ID=MS.gene45151.t1.exon34;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26810336 | 26810439 | 26810336 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| chr5.1 | exon | 26810187 | 26810248 | 26810187 | ID=MS.gene45151.t1.exon35;Parent=MS.gene45151.t1 |
| chr5.1 | CDS | 26810187 | 26810248 | 26810187 | ID=cds.MS.gene45151.t1;Parent=MS.gene45151.t1 |
| Gene Sequence |
| Protein sequence |
