Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45226.t1 | XP_003621334.1 | 85.6 | 369 | 21 | 1 | 1 | 337 | 1 | 369 | 5.30E-175 | 623.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45226.t1 | P93324 | 54.4 | 366 | 131 | 4 | 7 | 337 | 8 | 372 | 3.5e-103 | 376.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45226.t1 | G7L362 | 85.6 | 369 | 21 | 1 | 1 | 337 | 1 | 369 | 3.8e-175 | 623.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049549 | MS.gene45226 | 0.811072 | 8.41E-51 | -1.69E-46 |
MS.gene049611 | MS.gene45226 | 0.803239 | 3.83E-49 | -1.69E-46 |
MS.gene051422 | MS.gene45226 | 0.846439 | 2.17E-59 | -1.69E-46 |
MS.gene05240 | MS.gene45226 | 0.800522 | 1.39E-48 | -1.69E-46 |
MS.gene053420 | MS.gene45226 | 0.80397 | 2.70E-49 | -1.69E-46 |
MS.gene05483 | MS.gene45226 | 0.818335 | 2.07E-52 | -1.69E-46 |
MS.gene056590 | MS.gene45226 | 0.803022 | 4.25E-49 | -1.69E-46 |
MS.gene056591 | MS.gene45226 | 0.800604 | 1.33E-48 | -1.69E-46 |
MS.gene056856 | MS.gene45226 | 0.816333 | 5.84E-52 | -1.69E-46 |
MS.gene057544 | MS.gene45226 | 0.80487 | 1.76E-49 | -1.69E-46 |
MS.gene057547 | MS.gene45226 | 0.803922 | 2.77E-49 | -1.69E-46 |
MS.gene057549 | MS.gene45226 | 0.802573 | 5.26E-49 | -1.69E-46 |
MS.gene058068 | MS.gene45226 | 0.821045 | 4.97E-53 | -1.69E-46 |
MS.gene058099 | MS.gene45226 | 0.830882 | 2.29E-55 | -1.69E-46 |
MS.gene059953 | MS.gene45226 | 0.820919 | 5.32E-53 | -1.69E-46 |
MS.gene059955 | MS.gene45226 | 0.818064 | 2.38E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45226.t1 | MTR_7g012020 | 85.637 | 369 | 21 | 1 | 1 | 337 | 1 | 369 | 0.0 | 638 |
MS.gene45226.t1 | MTR_7g012040 | 73.984 | 369 | 63 | 3 | 1 | 337 | 1 | 368 | 0.0 | 538 |
MS.gene45226.t1 | MTR_7g011900 | 70.109 | 368 | 78 | 1 | 2 | 337 | 3 | 370 | 0.0 | 516 |
MS.gene45226.t1 | MTR_7g012020 | 88.561 | 271 | 31 | 0 | 1 | 271 | 1 | 271 | 1.11e-176 | 491 |
MS.gene45226.t1 | MTR_7g012020 | 94.400 | 250 | 14 | 0 | 1 | 250 | 1 | 250 | 1.76e-176 | 489 |
MS.gene45226.t1 | MTR_7g012070 | 66.488 | 373 | 88 | 4 | 2 | 337 | 3 | 375 | 2.77e-174 | 488 |
MS.gene45226.t1 | MTR_7g012090 | 65.684 | 373 | 91 | 4 | 2 | 337 | 3 | 375 | 3.85e-170 | 478 |
MS.gene45226.t1 | MTR_7g011990 | 65.041 | 369 | 92 | 4 | 2 | 337 | 3 | 367 | 4.38e-167 | 470 |
MS.gene45226.t1 | MTR_2g055940 | 60.571 | 350 | 105 | 2 | 20 | 337 | 15 | 363 | 2.44e-145 | 414 |
MS.gene45226.t1 | MTR_1g096310 | 54.645 | 366 | 130 | 4 | 7 | 337 | 8 | 372 | 2.91e-134 | 387 |
MS.gene45226.t1 | MTR_3g021430 | 48.580 | 352 | 144 | 7 | 20 | 337 | 9 | 357 | 4.32e-102 | 304 |
MS.gene45226.t1 | MTR_3g021440 | 47.159 | 352 | 149 | 6 | 20 | 337 | 22 | 370 | 9.17e-101 | 301 |
MS.gene45226.t1 | MTR_1g036490 | 42.857 | 371 | 172 | 7 | 4 | 337 | 3 | 370 | 5.16e-97 | 292 |
MS.gene45226.t1 | MTR_1g036460 | 43.396 | 371 | 170 | 6 | 4 | 337 | 3 | 370 | 5.69e-97 | 292 |
MS.gene45226.t1 | MTR_1g036510 | 44.633 | 354 | 157 | 5 | 21 | 337 | 33 | 384 | 3.83e-90 | 275 |
MS.gene45226.t1 | MTR_3g092900 | 39.394 | 363 | 182 | 6 | 8 | 337 | 6 | 363 | 1.14e-78 | 245 |
MS.gene45226.t1 | MTR_1g036510 | 51.055 | 237 | 110 | 3 | 21 | 253 | 33 | 267 | 5.02e-71 | 222 |
MS.gene45226.t1 | MTR_1g036510 | 48.425 | 254 | 124 | 4 | 21 | 269 | 33 | 284 | 1.36e-69 | 219 |
MS.gene45226.t1 | MTR_6g060290 | 60.870 | 184 | 54 | 3 | 2 | 183 | 3 | 170 | 4.29e-68 | 211 |
MS.gene45226.t1 | MTR_5g098170 | 37.535 | 357 | 181 | 9 | 18 | 337 | 12 | 363 | 2.04e-67 | 216 |
MS.gene45226.t1 | MTR_1g050220 | 39.812 | 319 | 126 | 6 | 25 | 317 | 6 | 284 | 1.39e-65 | 209 |
MS.gene45226.t1 | MTR_7g118300 | 35.870 | 368 | 197 | 8 | 4 | 337 | 13 | 375 | 6.18e-65 | 210 |
MS.gene45226.t1 | MTR_0591s0010 | 32.967 | 364 | 199 | 9 | 13 | 337 | 20 | 377 | 4.84e-56 | 187 |
MS.gene45226.t1 | MTR_7g118320 | 33.151 | 365 | 199 | 9 | 12 | 337 | 4 | 362 | 5.95e-55 | 183 |
MS.gene45226.t1 | MTR_8g068690 | 32.873 | 362 | 202 | 8 | 13 | 337 | 19 | 376 | 1.05e-53 | 181 |
MS.gene45226.t1 | MTR_8g068750 | 32.320 | 362 | 204 | 8 | 13 | 337 | 20 | 377 | 7.35e-52 | 176 |
MS.gene45226.t1 | MTR_8g068870 | 31.965 | 341 | 190 | 8 | 34 | 337 | 28 | 363 | 1.88e-48 | 166 |
MS.gene45226.t1 | MTR_2g072790 | 32.595 | 316 | 168 | 9 | 40 | 318 | 29 | 336 | 1.89e-46 | 161 |
MS.gene45226.t1 | MTR_6g078850 | 29.213 | 356 | 208 | 7 | 20 | 336 | 32 | 382 | 9.80e-44 | 157 |
MS.gene45226.t1 | MTR_8g068690 | 35.950 | 242 | 148 | 5 | 13 | 250 | 19 | 257 | 1.89e-43 | 151 |
MS.gene45226.t1 | MTR_8g024160 | 31.161 | 353 | 166 | 7 | 18 | 337 | 20 | 328 | 3.22e-41 | 147 |
MS.gene45226.t1 | MTR_3g096050 | 30.623 | 369 | 205 | 10 | 8 | 337 | 2 | 358 | 1.03e-39 | 143 |
MS.gene45226.t1 | MTR_8g068570 | 29.573 | 328 | 166 | 6 | 13 | 304 | 20 | 318 | 1.27e-38 | 139 |
MS.gene45226.t1 | MTR_8g068600 | 36.364 | 209 | 127 | 4 | 45 | 250 | 27 | 232 | 4.08e-37 | 135 |
MS.gene45226.t1 | MTR_3g096070 | 30.721 | 319 | 156 | 8 | 40 | 322 | 32 | 321 | 2.70e-35 | 131 |
MS.gene45226.t1 | MTR_8g068730 | 28.453 | 362 | 186 | 9 | 13 | 337 | 20 | 345 | 3.25e-33 | 126 |
MS.gene45226.t1 | MTR_3g096050 | 34.272 | 213 | 132 | 5 | 40 | 250 | 32 | 238 | 3.62e-30 | 115 |
MS.gene45226.t1 | MTR_0017s0100 | 28.529 | 340 | 190 | 13 | 37 | 336 | 41 | 367 | 1.12e-26 | 108 |
MS.gene45226.t1 | MTR_8g068740 | 30.165 | 242 | 130 | 6 | 13 | 250 | 20 | 226 | 7.12e-25 | 102 |
MS.gene45226.t1 | MTR_0079s0070 | 29.664 | 327 | 178 | 13 | 37 | 323 | 7 | 321 | 1.98e-24 | 102 |
MS.gene45226.t1 | MTR_3g083620 | 26.791 | 321 | 188 | 9 | 38 | 322 | 38 | 347 | 2.12e-24 | 102 |
MS.gene45226.t1 | MTR_4g038440 | 29.664 | 327 | 178 | 13 | 37 | 323 | 41 | 355 | 3.78e-24 | 101 |
MS.gene45226.t1 | MTR_8g068620 | 42.202 | 109 | 63 | 0 | 163 | 271 | 2 | 110 | 7.46e-22 | 89.4 |
MS.gene45226.t1 | MTR_4g033200 | 29.752 | 242 | 160 | 7 | 33 | 269 | 26 | 262 | 2.03e-21 | 94.0 |
MS.gene45226.t1 | MTR_4g033015 | 31.019 | 216 | 140 | 6 | 33 | 244 | 26 | 236 | 2.61e-20 | 90.9 |
MS.gene45226.t1 | MTR_1g076940 | 22.321 | 336 | 220 | 5 | 37 | 336 | 30 | 360 | 5.41e-20 | 90.1 |
MS.gene45226.t1 | MTR_1g076930 | 25.837 | 209 | 144 | 4 | 40 | 245 | 10 | 210 | 8.19e-20 | 87.4 |
MS.gene45226.t1 | MTR_4g038440 | 32.110 | 218 | 135 | 7 | 37 | 250 | 41 | 249 | 1.96e-19 | 87.0 |
MS.gene45226.t1 | MTR_0794s0020 | 29.245 | 212 | 141 | 6 | 37 | 244 | 30 | 236 | 3.93e-19 | 85.5 |
MS.gene45226.t1 | MTR_4g088200 | 26.364 | 330 | 197 | 9 | 33 | 323 | 26 | 348 | 1.12e-18 | 86.3 |
MS.gene45226.t1 | MTR_4g033150 | 29.245 | 212 | 141 | 6 | 37 | 244 | 30 | 236 | 1.57e-18 | 85.9 |
MS.gene45226.t1 | MTR_5g074680 | 24.927 | 341 | 211 | 10 | 33 | 336 | 27 | 359 | 1.41e-17 | 83.2 |
MS.gene45226.t1 | MTR_5g074600 | 25.105 | 239 | 170 | 6 | 33 | 269 | 26 | 257 | 4.33e-17 | 81.6 |
MS.gene45226.t1 | MTR_4g033170 | 27.778 | 252 | 166 | 8 | 33 | 279 | 26 | 266 | 2.54e-16 | 79.3 |
MS.gene45226.t1 | MTR_4g033085 | 27.778 | 252 | 166 | 8 | 33 | 279 | 26 | 266 | 2.59e-16 | 79.3 |
MS.gene45226.t1 | MTR_5g074580 | 25.076 | 327 | 201 | 9 | 33 | 322 | 27 | 346 | 2.78e-16 | 79.3 |
MS.gene45226.t1 | MTR_7g014570 | 23.881 | 335 | 207 | 9 | 37 | 336 | 30 | 351 | 4.37e-16 | 78.6 |
MS.gene45226.t1 | MTR_7g014510 | 21.538 | 325 | 209 | 7 | 35 | 322 | 28 | 343 | 9.47e-16 | 77.8 |
MS.gene45226.t1 | MTR_4g088345 | 25.519 | 337 | 197 | 12 | 40 | 336 | 33 | 355 | 1.69e-15 | 77.0 |
MS.gene45226.t1 | MTR_7g024520 | 23.565 | 331 | 201 | 10 | 40 | 335 | 32 | 345 | 2.64e-15 | 76.3 |
MS.gene45226.t1 | MTR_5g074540 | 25.680 | 331 | 176 | 11 | 33 | 322 | 26 | 327 | 9.90e-15 | 74.3 |
MS.gene45226.t1 | MTR_7g024500 | 25.641 | 234 | 154 | 8 | 40 | 269 | 32 | 249 | 1.38e-14 | 74.3 |
MS.gene45226.t1 | MTR_4g079160 | 26.163 | 344 | 193 | 14 | 25 | 322 | 13 | 341 | 2.08e-14 | 73.6 |
MS.gene45226.t1 | MTR_4g088190 | 26.888 | 331 | 197 | 9 | 33 | 323 | 26 | 351 | 6.06e-11 | 63.2 |
MS.gene45226.t1 | MTR_8g068760 | 33.333 | 105 | 68 | 1 | 25 | 127 | 20 | 124 | 7.61e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45226.t1 | AT5G54160 | 41.311 | 351 | 168 | 6 | 20 | 337 | 16 | 361 | 3.67e-79 | 246 |
MS.gene45226.t1 | AT1G77520 | 34.463 | 354 | 190 | 6 | 24 | 337 | 30 | 381 | 2.49e-61 | 201 |
MS.gene45226.t1 | AT1G51990 | 32.955 | 352 | 199 | 5 | 20 | 336 | 12 | 361 | 3.52e-56 | 187 |
MS.gene45226.t1 | AT1G51990 | 32.955 | 352 | 199 | 5 | 20 | 336 | 12 | 361 | 2.90e-55 | 184 |
MS.gene45226.t1 | AT1G77530 | 36.158 | 354 | 184 | 7 | 24 | 337 | 30 | 381 | 9.69e-55 | 184 |
MS.gene45226.t1 | AT1G33030 | 35.632 | 348 | 180 | 10 | 27 | 337 | 10 | 350 | 1.85e-53 | 179 |
MS.gene45226.t1 | AT1G63140 | 32.961 | 358 | 198 | 7 | 20 | 337 | 26 | 381 | 6.51e-50 | 171 |
MS.gene45226.t1 | AT1G63140 | 32.642 | 386 | 206 | 9 | 4 | 337 | 18 | 401 | 1.10e-49 | 171 |
MS.gene45226.t1 | AT5G53810 | 32.749 | 342 | 183 | 9 | 39 | 337 | 41 | 378 | 5.43e-46 | 160 |
MS.gene45226.t1 | AT1G21100 | 34.174 | 357 | 183 | 11 | 16 | 327 | 15 | 364 | 7.11e-45 | 157 |
MS.gene45226.t1 | AT1G21130 | 33.983 | 359 | 185 | 11 | 14 | 327 | 13 | 364 | 4.38e-44 | 155 |
MS.gene45226.t1 | AT1G21110 | 34.734 | 357 | 181 | 12 | 16 | 327 | 15 | 364 | 5.35e-44 | 155 |
MS.gene45226.t1 | AT1G33030 | 36.842 | 247 | 150 | 5 | 27 | 271 | 10 | 252 | 1.31e-42 | 149 |
MS.gene45226.t1 | AT1G33030 | 36.842 | 247 | 150 | 5 | 27 | 271 | 10 | 252 | 2.19e-42 | 148 |
MS.gene45226.t1 | AT1G77530 | 41.880 | 234 | 129 | 4 | 24 | 251 | 30 | 262 | 3.26e-42 | 148 |
MS.gene45226.t1 | AT1G21120 | 33.613 | 357 | 185 | 11 | 16 | 327 | 15 | 364 | 3.33e-42 | 150 |
MS.gene45226.t1 | AT1G21120 | 33.613 | 357 | 185 | 11 | 16 | 327 | 63 | 412 | 9.29e-42 | 150 |
MS.gene45226.t1 | AT1G76790 | 33.333 | 369 | 189 | 13 | 17 | 337 | 6 | 365 | 4.10e-41 | 147 |
MS.gene45226.t1 | AT3G53140 | 29.023 | 348 | 197 | 7 | 12 | 317 | 1 | 340 | 1.63e-38 | 140 |
MS.gene45226.t1 | AT1G63140 | 35.249 | 261 | 150 | 5 | 4 | 246 | 18 | 277 | 2.23e-35 | 130 |
MS.gene45226.t1 | AT1G63140 | 35.249 | 261 | 150 | 5 | 4 | 246 | 18 | 277 | 3.79e-35 | 130 |
MS.gene45226.t1 | AT1G21130 | 37.500 | 248 | 137 | 10 | 14 | 250 | 13 | 253 | 1.27e-30 | 118 |
MS.gene45226.t1 | AT5G37170 | 29.595 | 321 | 152 | 11 | 58 | 337 | 47 | 334 | 8.33e-30 | 116 |
MS.gene45226.t1 | AT1G62900 | 34.466 | 206 | 100 | 4 | 166 | 337 | 1 | 205 | 9.72e-30 | 113 |
MS.gene45226.t1 | AT5G37170 | 33.333 | 198 | 96 | 5 | 175 | 337 | 38 | 234 | 4.36e-27 | 107 |
MS.gene45226.t1 | AT5G37170 | 33.155 | 187 | 89 | 5 | 186 | 337 | 1 | 186 | 1.07e-24 | 99.4 |
MS.gene45226.t1 | AT4G35160 | 27.027 | 333 | 186 | 12 | 38 | 322 | 44 | 367 | 5.48e-19 | 87.4 |
MS.gene45226.t1 | AT4G35150 | 25.481 | 208 | 109 | 6 | 159 | 322 | 105 | 310 | 1.07e-14 | 74.3 |
Find 72 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAAATGGTGATTCTTATT+TGG | 0.110334 | 7.3:+85713849 | MS.gene45226:CDS |
TTTGTTGGTTCTAGATCTTC+TGG | 0.251949 | 7.3:-85716314 | None:intergenic |
GGTAGCATAGTGAGAGTTTA+TGG | 0.270395 | 7.3:+85713793 | MS.gene45226:CDS |
TGTGAAGGAATATGAGAGTT+TGG | 0.271292 | 7.3:+85716403 | MS.gene45226:CDS |
GAAAATGGTGATTCTTATTT+GGG | 0.280555 | 7.3:+85713850 | MS.gene45226:CDS |
TTCTTGAACAGGTCCCCTTC+TGG | 0.292183 | 7.3:-85715073 | None:intergenic |
TGTCTTGCTTTCTCTATCAT+TGG | 0.299632 | 7.3:+85716461 | MS.gene45226:CDS |
AACATACGCTCGAGCCTATT+CGG | 0.331765 | 7.3:-85713715 | None:intergenic |
CTCTAAATACCCATCAATAA+AGG | 0.344031 | 7.3:+85715285 | MS.gene45226:CDS |
TTCCATGAACTTTCTTGAAC+AGG | 0.354505 | 7.3:-85715084 | None:intergenic |
AAATTGATTGCCTTTATTGA+TGG | 0.365444 | 7.3:-85715295 | None:intergenic |
TATGGTACTTGGTGCCAATT+TGG | 0.374973 | 7.3:+85713564 | MS.gene45226:CDS |
AACTGCAGAAAACACCAAAT+TGG | 0.390258 | 7.3:-85713578 | None:intergenic |
GTCTCACCCTGCTATGTCAA+TGG | 0.409832 | 7.3:+85713891 | MS.gene45226:CDS |
ATAAGAATGAGCTTTCCATT+TGG | 0.419163 | 7.3:-85716278 | None:intergenic |
TTCTAGATCTTCTGGTTGCA+AGG | 0.420081 | 7.3:-85716306 | None:intergenic |
GCATGTATCCGTCATTGATT+TGG | 0.420357 | 7.3:-85715158 | None:intergenic |
CTCTTCTGTCTGTTTCTACT+CGG | 0.428133 | 7.3:+85713758 | MS.gene45226:CDS |
TACAAAGCTTTGCCTCCAAA+TGG | 0.428651 | 7.3:+85716263 | MS.gene45226:CDS |
GTTTATGGGATCACACCTTC+TGG | 0.433466 | 7.3:+85713808 | MS.gene45226:CDS |
AACCAACAAATGTATCTAGA+TGG | 0.437328 | 7.3:+85716327 | MS.gene45226:CDS |
AATTGATTGCCTTTATTGAT+GGG | 0.443973 | 7.3:-85715294 | None:intergenic |
GTGAAGGAATATGAGAGTTT+GGG | 0.444889 | 7.3:+85716404 | MS.gene45226:CDS |
AACACTCTGATTTGCCGAAT+AGG | 0.445684 | 7.3:+85713701 | MS.gene45226:CDS |
CGAAATATACCACGGATTTG+AGG | 0.449152 | 7.3:+85715204 | MS.gene45226:CDS |
GAGAGTTTGGGAAAACGATC+TGG | 0.456073 | 7.3:+85716416 | MS.gene45226:CDS |
AGCCATCTAGATACATTTGT+TGG | 0.456930 | 7.3:-85716329 | None:intergenic |
TATCATTGTCATCTATTTGT+GGG | 0.458069 | 7.3:-85713531 | None:intergenic |
GACCTGTTCAAGAAAGTTCA+TGG | 0.464929 | 7.3:+85715082 | MS.gene45226:CDS |
CACTATGCTACCGTCATCAT+TGG | 0.476728 | 7.3:-85713782 | None:intergenic |
TACCAACTTTGGTTGATGTA+GGG | 0.480618 | 7.3:+85715230 | MS.gene45226:CDS |
TACATGAGAAATGGATTACC+TGG | 0.483216 | 7.3:-85715355 | None:intergenic |
TTTATTTGATATCATTGCTA+AGG | 0.484926 | 7.3:+85713624 | MS.gene45226:CDS |
GTATCATTGTCATCTATTTG+TGG | 0.485841 | 7.3:-85713532 | None:intergenic |
CAAATCCGTGGTATATTTCG+AGG | 0.487892 | 7.3:-85715201 | None:intergenic |
AGAATGAGCTTTCCATTTGG+AGG | 0.489786 | 7.3:-85716275 | None:intergenic |
GTAGCATAGTGAGAGTTTAT+GGG | 0.494697 | 7.3:+85713794 | MS.gene45226:CDS |
ATACCAACTTTGGTTGATGT+AGG | 0.497377 | 7.3:+85715229 | MS.gene45226:CDS |
ATTTGAGGGAATACCAACTT+TGG | 0.502054 | 7.3:+85715219 | MS.gene45226:CDS |
GAAATATACCACGGATTTGA+GGG | 0.503993 | 7.3:+85715205 | MS.gene45226:CDS |
ACCAACTTTGGTTGATGTAG+GGG | 0.504736 | 7.3:+85715231 | MS.gene45226:CDS |
TACCACACCATTGACATAGC+AGG | 0.508975 | 7.3:-85713898 | None:intergenic |
ACACTCTCAGCTATGGTACT+TGG | 0.515175 | 7.3:+85713553 | MS.gene45226:CDS |
TTTCTCTATCATTGGAGTGA+TGG | 0.521287 | 7.3:+85716469 | MS.gene45226:CDS |
TAACTTTGAAGCAATTTCAA+AGG | 0.526373 | 7.3:-85713671 | None:intergenic |
TCTAGATCTTCTGGTTGCAA+GGG | 0.529836 | 7.3:-85716305 | None:intergenic |
GTAAATATTTCATTTATCTG+TGG | 0.548437 | 7.3:-85715136 | None:intergenic |
GGCAAATCAGAGTGTTGAGT+TGG | 0.551660 | 7.3:-85713694 | None:intergenic |
AACATGATGTTTGTCACAGC+TGG | 0.557381 | 7.3:+85716365 | MS.gene45226:CDS |
GAAAATACACCACCTTGTCC+AGG | 0.565413 | 7.3:+85715337 | MS.gene45226:CDS |
CAATGATACACTCTCAGCTA+TGG | 0.570430 | 7.3:+85713546 | MS.gene45226:CDS |
GTTTGTCACAGCTGGTGGAA+TGG | 0.572866 | 7.3:+85716373 | MS.gene45226:CDS |
ACCACACCATTGACATAGCA+GGG | 0.573961 | 7.3:-85713897 | None:intergenic |
AAGCAATTATCGATCCAGAA+GGG | 0.576791 | 7.3:+85715059 | MS.gene45226:CDS |
ATCATTGCTAAGGAAAGTAA+TGG | 0.580805 | 7.3:+85713634 | MS.gene45226:CDS |
TTGACAAAATATTTACCAGA+AGG | 0.585900 | 7.3:-85713823 | None:intergenic |
GAAGCAATTATCGATCCAGA+AGG | 0.601544 | 7.3:+85715058 | MS.gene45226:CDS |
ATCATTGTCATCTATTTGTG+GGG | 0.602565 | 7.3:-85713530 | None:intergenic |
ATGATGTTTGTCACAGCTGG+TGG | 0.606417 | 7.3:+85716368 | MS.gene45226:CDS |
AATATTTACCAAATCAATGA+CGG | 0.607973 | 7.3:+85715150 | MS.gene45226:CDS |
AGCAATTATCGATCCAGAAG+GGG | 0.608241 | 7.3:+85715060 | MS.gene45226:CDS |
TGATAAAGAAAATCATGTGG+TGG | 0.616916 | 7.3:+85713498 | MS.gene45226:CDS |
ATTGCTAAGGAAAGTAATGG+TGG | 0.621180 | 7.3:+85713637 | MS.gene45226:CDS |
CCAACTTTGGTTGATGTAGG+GGG | 0.635491 | 7.3:+85715232 | MS.gene45226:CDS |
TTGGTATTCCCTCAAATCCG+TGG | 0.644399 | 7.3:-85715213 | None:intergenic |
AGAAATGGATTACCTGGACA+AGG | 0.660847 | 7.3:-85715349 | None:intergenic |
CAATGATAAAGAAAATCATG+TGG | 0.674083 | 7.3:+85713495 | MS.gene45226:CDS |
ACCCTGCTATGTCAATGGTG+TGG | 0.678722 | 7.3:+85713896 | MS.gene45226:CDS |
TCTACTCGGACCAATGATGA+CGG | 0.683816 | 7.3:+85713772 | MS.gene45226:CDS |
AGAATCCTCGAAATATACCA+CGG | 0.683911 | 7.3:+85715196 | MS.gene45226:CDS |
TGGAATGGAAAGAAGTGTGA+AGG | 0.698054 | 7.3:+85716388 | MS.gene45226:CDS |
AATGGATTACCTGGACAAGG+TGG | 0.711936 | 7.3:-85715346 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAAAATAAAAAACTGA+TGG | - | chr7.3:85715553-85715572 | None:intergenic | 10.0% |
!! | AAATAAAATAAAAAACTGAT+GGG | - | chr7.3:85715552-85715571 | None:intergenic | 10.0% |
!! | AATAATATTGTAACTTAAAT+TGG | - | chr7.3:85715403-85715422 | None:intergenic | 10.0% |
!! | GCATAATAAATTAAAAATTA+TGG | - | chr7.3:85714897-85714916 | None:intergenic | 10.0% |
!!! | AAAATATTTTTATAATGTGT+AGG | + | chr7.3:85715023-85715042 | MS.gene45226:intron | 10.0% |
!!! | AAGAACTATTTTATAAATAA+GGG | - | chr7.3:85716146-85716165 | None:intergenic | 10.0% |
!!! | ATTGATTTTAAAAAATTAGT+GGG | - | chr7.3:85715711-85715730 | None:intergenic | 10.0% |
!!! | GTAATATTTTTTTCTTTTAA+AGG | - | chr7.3:85714975-85714994 | None:intergenic | 10.0% |
!!! | TAAATCACTTTTAAAAATAT+AGG | + | chr7.3:85715643-85715662 | MS.gene45226:intron | 10.0% |
!!! | TAAGAACTATTTTATAAATA+AGG | - | chr7.3:85716147-85716166 | None:intergenic | 10.0% |
!!! | TATTGATTTTAAAAAATTAG+TGG | - | chr7.3:85715712-85715731 | None:intergenic | 10.0% |
!!! | TCACAAATATTTTTTTTTTA+GGG | - | chr7.3:85714730-85714749 | None:intergenic | 10.0% |
!!! | TGAGTTTTTTTTTTTTTTTA+AGG | - | chr7.3:85714003-85714022 | None:intergenic | 10.0% |
!! | AAAAATTATTACATGAGAAA+TGG | - | chr7.3:85715367-85715386 | None:intergenic | 15.0% |
!! | AATCAAATGTTTGTATATTT+AGG | - | chr7.3:85715930-85715949 | None:intergenic | 15.0% |
!! | ACAAATTCTTAGTTATTAAT+TGG | - | chr7.3:85715861-85715880 | None:intergenic | 15.0% |
!! | ATCAAATGTTTGTATATTTA+GGG | - | chr7.3:85715929-85715948 | None:intergenic | 15.0% |
!! | GTCATTTATTAAAACTAATA+TGG | + | chr7.3:85715788-85715807 | MS.gene45226:intron | 15.0% |
!!! | AAAGCATAAAGAATATTTTA+TGG | + | chr7.3:85716070-85716089 | MS.gene45226:intron | 15.0% |
!!! | AAATATTTTTTTTTTAGGGA+AGG | - | chr7.3:85714726-85714745 | None:intergenic | 15.0% |
!!! | AAGCATAAAGAATATTTTAT+GGG | + | chr7.3:85716071-85716090 | MS.gene45226:intron | 15.0% |
!!! | GATAAATGAAAATTTTTAGA+GGG | - | chr7.3:85715987-85716006 | None:intergenic | 15.0% |
!!! | GTCACAAATATTTTTTTTTT+AGG | - | chr7.3:85714731-85714750 | None:intergenic | 15.0% |
!!! | TAAAATATTCTTTATGCTTT+TGG | - | chr7.3:85716070-85716089 | None:intergenic | 15.0% |
!!! | TGATAAATGAAAATTTTTAG+AGG | - | chr7.3:85715988-85716007 | None:intergenic | 15.0% |
!!! | TTTAAAATCAATATGTTAAG+TGG | + | chr7.3:85715719-85715738 | MS.gene45226:intron | 15.0% |
!!! | TTTATCATTGATTATCTATA+GGG | + | chr7.3:85715884-85715903 | MS.gene45226:intron | 15.0% |
!!! | TTTTAATAAAATCATTACCA+TGG | + | chr7.3:85714649-85714668 | MS.gene45226:intron | 15.0% |
!!! | TTTTATCATTGATTATCTAT+AGG | + | chr7.3:85715883-85715902 | MS.gene45226:intron | 15.0% |
!! | AAAAAAATGAAACATTTCGT+TGG | + | chr7.3:85714068-85714087 | MS.gene45226:intron | 20.0% |
!! | AAAATTTCCCAATTTCATTT+AGG | + | chr7.3:85715428-85715447 | MS.gene45226:intron | 20.0% |
!! | AATATTTACCAAATCAATGA+CGG | + | chr7.3:85715150-85715169 | MS.gene45226:CDS | 20.0% |
!! | AATCAAATGTTGGTATATTT+AGG | + | chr7.3:85716100-85716119 | MS.gene45226:intron | 20.0% |
!! | AGAAATGAAATTTATCAATC+CGG | + | chr7.3:85714027-85714046 | MS.gene45226:intron | 20.0% |
!! | AGCAAGTTATAACTAAATTA+TGG | + | chr7.3:85715595-85715614 | MS.gene45226:intron | 20.0% |
!! | ATATGGATGAATTAATTCTT+AGG | + | chr7.3:85715805-85715824 | MS.gene45226:intron | 20.0% |
!! | ATCAAATGTTGGTATATTTA+GGG | + | chr7.3:85716101-85716120 | MS.gene45226:intron | 20.0% |
!! | GTAAATATTTCATTTATCTG+TGG | - | chr7.3:85715139-85715158 | None:intergenic | 20.0% |
!! | TATTTACATGTGTTTATAAG+TGG | - | chr7.3:85714605-85714624 | None:intergenic | 20.0% |
!! | TTTAAAAATATAGGTGTAGT+AGG | + | chr7.3:85715652-85715671 | MS.gene45226:intron | 20.0% |
!! | TTTATTTGATATCATTGCTA+AGG | + | chr7.3:85713624-85713643 | MS.gene45226:CDS | 20.0% |
!!! | AAACCTAAGAAATGTTTTAA+AGG | - | chr7.3:85715959-85715978 | None:intergenic | 20.0% |
!!! | AACCTAAGAAATGTTTTAAA+GGG | - | chr7.3:85715958-85715977 | None:intergenic | 20.0% |
!!! | ACTATTTTATAAATAAGGGT+TGG | - | chr7.3:85716142-85716161 | None:intergenic | 20.0% |
!!! | AGCATAAAGAATATTTTATG+GGG | + | chr7.3:85716072-85716091 | MS.gene45226:intron | 20.0% |
!!! | ATTATTTTTTTTTTGAAGGG+AGG | - | chr7.3:85714694-85714713 | None:intergenic | 20.0% |
!!! | ATTTTCTTTATCATTGGTAT+AGG | - | chr7.3:85713491-85713510 | None:intergenic | 20.0% |
!!! | TATTTTGTCAAGTATGAAAA+TGG | + | chr7.3:85713835-85713854 | MS.gene45226:CDS | 20.0% |
!!! | TCATTGTATCTATATTTTTG+TGG | - | chr7.3:85714143-85714162 | None:intergenic | 20.0% |
! | AAATTGATTGCCTTTATTGA+TGG | - | chr7.3:85715298-85715317 | None:intergenic | 25.0% |
! | AACATATAGAGTAGTTAGAA+AGG | + | chr7.3:85713957-85713976 | MS.gene45226:intron | 25.0% |
! | AATTGATTGCCTTTATTGAT+GGG | - | chr7.3:85715297-85715316 | None:intergenic | 25.0% |
! | ACTATCTTAAAAATTGTGGT+TGG | + | chr7.3:85714501-85714520 | MS.gene45226:intron | 25.0% |
! | ATGAACATGTGTTTATAAGT+GGG | - | chr7.3:85714270-85714289 | None:intergenic | 25.0% |
! | ATTCAATGCCTAAATGAAAT+TGG | - | chr7.3:85715439-85715458 | None:intergenic | 25.0% |
! | CAATGATAAAGAAAATCATG+TGG | + | chr7.3:85713495-85713514 | MS.gene45226:CDS | 25.0% |
! | CTATCTTAAAAATTGTGGTT+GGG | + | chr7.3:85714502-85714521 | MS.gene45226:intron | 25.0% |
! | GAGCAATGAAATATAATTCA+AGG | - | chr7.3:85716186-85716205 | None:intergenic | 25.0% |
! | TAAATTGACTACATCAATCA+AGG | - | chr7.3:85713936-85713955 | None:intergenic | 25.0% |
! | TATCATTGTCATCTATTTGT+GGG | - | chr7.3:85713534-85713553 | None:intergenic | 25.0% |
! | TATGAACATGTGTTTATAAG+TGG | - | chr7.3:85714271-85714290 | None:intergenic | 25.0% |
! | TATGTACATGTGTTTATAAG+TGG | - | chr7.3:85714573-85714592 | None:intergenic | 25.0% |
! | TCAAATGTTGGTATATTTAG+GGG | + | chr7.3:85716102-85716121 | MS.gene45226:intron | 25.0% |
! | TGAAAATGGTGATTCTTATT+TGG | + | chr7.3:85713849-85713868 | MS.gene45226:CDS | 25.0% |
! | TGGTACTATCTTAAAAATTG+TGG | + | chr7.3:85714497-85714516 | MS.gene45226:intron | 25.0% |
! | TTCAATGCCTAAATGAAATT+GGG | - | chr7.3:85715438-85715457 | None:intergenic | 25.0% |
! | TTGACAAAATATTTACCAGA+AGG | - | chr7.3:85713826-85713845 | None:intergenic | 25.0% |
!! | CACATGATTTTCTTTATCAT+TGG | - | chr7.3:85713497-85713516 | None:intergenic | 25.0% |
!! | GAAAATGGTGATTCTTATTT+GGG | + | chr7.3:85713850-85713869 | MS.gene45226:CDS | 25.0% |
!! | TATTTTCAATTACTTGTGGA+AGG | - | chr7.3:85715324-85715343 | None:intergenic | 25.0% |
!!! | ACTATCAGATTTTTGCTATT+GGG | - | chr7.3:85714447-85714466 | None:intergenic | 25.0% |
!!! | AGCATGGAATAATTTTTAGA+GGG | + | chr7.3:85716043-85716062 | MS.gene45226:intron | 25.0% |
!!! | TAACTTTGAAGCAATTTCAA+AGG | - | chr7.3:85713674-85713693 | None:intergenic | 25.0% |
!!! | TACTATCAGATTTTTGCTAT+TGG | - | chr7.3:85714448-85714467 | None:intergenic | 25.0% |
!!! | TTGTATCTATATTTTTGTGG+TGG | - | chr7.3:85714140-85714159 | None:intergenic | 25.0% |
AAATGAAACATTTCGTTGGT+AGG | + | chr7.3:85714072-85714091 | MS.gene45226:intron | 30.0% | |
AACCAACAAATGTATCTAGA+TGG | + | chr7.3:85716327-85716346 | MS.gene45226:CDS | 30.0% | |
AATCATTATGACATCTCCTT+TGG | - | chr7.3:85715492-85715511 | None:intergenic | 30.0% | |
ACAAATTATTTGACACTCCA+TGG | - | chr7.3:85714669-85714688 | None:intergenic | 30.0% | |
AGCAAAAATCTGATAGTAGA+TGG | + | chr7.3:85714450-85714469 | MS.gene45226:intron | 30.0% | |
AGGAGATGTCATAATGATTA+AGG | + | chr7.3:85715493-85715512 | MS.gene45226:intron | 30.0% | |
ATAAGAATGAGCTTTCCATT+TGG | - | chr7.3:85716281-85716300 | None:intergenic | 30.0% | |
ATCATTATGACATCTCCTTT+GGG | - | chr7.3:85715491-85715510 | None:intergenic | 30.0% | |
ATCATTGCTAAGGAAAGTAA+TGG | + | chr7.3:85713634-85713653 | MS.gene45226:CDS | 30.0% | |
ATCATTGTCATCTATTTGTG+GGG | - | chr7.3:85713533-85713552 | None:intergenic | 30.0% | |
CAAATGTTGGTATATTTAGG+GGG | + | chr7.3:85716103-85716122 | MS.gene45226:intron | 30.0% | |
CACATGTTCATACTATCATT+TGG | + | chr7.3:85714279-85714298 | MS.gene45226:intron | 30.0% | |
CTCTAAATACCCATCAATAA+AGG | + | chr7.3:85715285-85715304 | MS.gene45226:CDS | 30.0% | |
GAATTCAAGGCTAAAAAACA+AGG | - | chr7.3:85714937-85714956 | None:intergenic | 30.0% | |
GTATCATTGTCATCTATTTG+TGG | - | chr7.3:85713535-85713554 | None:intergenic | 30.0% | |
TATATCAACAAGCTATTAGC+AGG | - | chr7.3:85714997-85715016 | None:intergenic | 30.0% | |
TGAACATGTGTTTATAAGTG+GGG | - | chr7.3:85714269-85714288 | None:intergenic | 30.0% | |
TGATAAAGAAAATCATGTGG+TGG | + | chr7.3:85713498-85713517 | MS.gene45226:CDS | 30.0% | |
TTACATGTGTTTATAAGTGG+TGG | - | chr7.3:85714602-85714621 | None:intergenic | 30.0% | |
TTGAATATTACACTAGAGCA+TGG | + | chr7.3:85716027-85716046 | MS.gene45226:intron | 30.0% | |
! | CAAAACTGACTTATAAAGTG+AGG | + | chr7.3:85714540-85714559 | MS.gene45226:intron | 30.0% |
! | CACTTTATAAGTCAGTTTTG+TGG | - | chr7.3:85714540-85714559 | None:intergenic | 30.0% |
! | GGTGTATTTTCAATTACTTG+TGG | - | chr7.3:85715328-85715347 | None:intergenic | 30.0% |
! | TTTTAACAGTTCAAAGTCAC+CGG | - | chr7.3:85714049-85714068 | None:intergenic | 30.0% |
!! | ATCTATATTTTTGTGGTGGT+CGG | - | chr7.3:85714136-85714155 | None:intergenic | 30.0% |
!! | CATTTAGGCATTGAATATGT+TGG | + | chr7.3:85715443-85715462 | MS.gene45226:intron | 30.0% |
!! | GAGCATGGAATAATTTTTAG+AGG | + | chr7.3:85716042-85716061 | MS.gene45226:intron | 30.0% |
!! | GTCCCTTTAAAACATTTCTT+AGG | + | chr7.3:85715953-85715972 | MS.gene45226:intron | 30.0% |
!!! | AAGTTTTGAATTCAACAGAC+AGG | + | chr7.3:85714787-85714806 | MS.gene45226:intron | 30.0% |
AACATGTCGTCAAGAATTCA+AGG | - | chr7.3:85714950-85714969 | None:intergenic | 35.0% | |
AACTGCAGAAAACACCAAAT+TGG | - | chr7.3:85713581-85713600 | None:intergenic | 35.0% | |
AAGCAATTATCGATCCAGAA+GGG | + | chr7.3:85715059-85715078 | MS.gene45226:CDS | 35.0% | |
AGAATCCTCGAAATATACCA+CGG | + | chr7.3:85715196-85715215 | MS.gene45226:CDS | 35.0% | |
AGCCATCTAGATACATTTGT+TGG | - | chr7.3:85716332-85716351 | None:intergenic | 35.0% | |
ATTGCTAAGGAAAGTAATGG+TGG | + | chr7.3:85713637-85713656 | MS.gene45226:CDS | 35.0% | |
ATTTGAGGGAATACCAACTT+TGG | + | chr7.3:85715219-85715238 | MS.gene45226:CDS | 35.0% | |
GAAATATACCACGGATTTGA+GGG | + | chr7.3:85715205-85715224 | MS.gene45226:CDS | 35.0% | |
GTACATGTGTTTATAAGTGG+TGG | - | chr7.3:85714570-85714589 | None:intergenic | 35.0% | |
GTAGCATAGTGAGAGTTTAT+GGG | + | chr7.3:85713794-85713813 | MS.gene45226:CDS | 35.0% | |
GTGAAGGAATATGAGAGTTT+GGG | + | chr7.3:85716404-85716423 | MS.gene45226:CDS | 35.0% | |
TCAAGCTTGTGAAGTGATAT+TGG | + | chr7.3:85714391-85714410 | MS.gene45226:intron | 35.0% | |
TGGGGACTAAAATCAAATGT+TGG | + | chr7.3:85716090-85716109 | MS.gene45226:intron | 35.0% | |
TGTCTTGCTTTCTCTATCAT+TGG | + | chr7.3:85716461-85716480 | MS.gene45226:CDS | 35.0% | |
TGTGAAGGAATATGAGAGTT+TGG | + | chr7.3:85716403-85716422 | MS.gene45226:CDS | 35.0% | |
TTCCATGAACTTTCTTGAAC+AGG | - | chr7.3:85715087-85715106 | None:intergenic | 35.0% | |
TTGAATTCAACAGACAGGAT+AGG | + | chr7.3:85714792-85714811 | MS.gene45226:intron | 35.0% | |
TTTCTCTATCATTGGAGTGA+TGG | + | chr7.3:85716469-85716488 | MS.gene45226:CDS | 35.0% | |
! | ACTTTTCATCCGACCAATTA+TGG | - | chr7.3:85716220-85716239 | None:intergenic | 35.0% |
! | ATACCAACTTTGGTTGATGT+AGG | + | chr7.3:85715229-85715248 | MS.gene45226:CDS | 35.0% |
! | TACCAACTTTGGTTGATGTA+GGG | + | chr7.3:85715230-85715249 | MS.gene45226:CDS | 35.0% |
! | TTGGTTCGTAGATAAAATGG+TGG | + | chr7.3:85714344-85714363 | MS.gene45226:intron | 35.0% |
!! | ATGTTTGAAAGTGTTCCCAA+AGG | + | chr7.3:85715473-85715492 | MS.gene45226:intron | 35.0% |
!! | TACATGAGAAATGGATTACC+TGG | - | chr7.3:85715358-85715377 | None:intergenic | 35.0% |
!! | TCTATATTTTTGTGGTGGTC+GGG | - | chr7.3:85714135-85714154 | None:intergenic | 35.0% |
!! | TTAGGCATTGAATATGTTGG+AGG | + | chr7.3:85715446-85715465 | MS.gene45226:intron | 35.0% |
!! | TTTGTTGGTTCTAGATCTTC+TGG | - | chr7.3:85716317-85716336 | None:intergenic | 35.0% |
AACATGATGTTTGTCACAGC+TGG | + | chr7.3:85716365-85716384 | MS.gene45226:CDS | 40.0% | |
ACCATTTATATCCACGAAGC+AGG | - | chr7.3:85714418-85714437 | None:intergenic | 40.0% | |
ACCTGCTTCGTGGATATAAA+TGG | + | chr7.3:85714414-85714433 | MS.gene45226:intron | 40.0% | |
AGAATGAGCTTTCCATTTGG+AGG | - | chr7.3:85716278-85716297 | None:intergenic | 40.0% | |
AGCAATTATCGATCCAGAAG+GGG | + | chr7.3:85715060-85715079 | MS.gene45226:CDS | 40.0% | |
CAAATCCGTGGTATATTTCG+AGG | - | chr7.3:85715204-85715223 | None:intergenic | 40.0% | |
CAATGATACACTCTCAGCTA+TGG | + | chr7.3:85713546-85713565 | MS.gene45226:CDS | 40.0% | |
CGAAATATACCACGGATTTG+AGG | + | chr7.3:85715204-85715223 | MS.gene45226:CDS | 40.0% | |
GAAGCAATTATCGATCCAGA+AGG | + | chr7.3:85715058-85715077 | MS.gene45226:CDS | 40.0% | |
GACCTGTTCAAGAAAGTTCA+TGG | + | chr7.3:85715082-85715101 | MS.gene45226:CDS | 40.0% | |
GCTTCGTGGATATAAATGGT+GGG | + | chr7.3:85714418-85714437 | MS.gene45226:intron | 40.0% | |
GGTAGCATAGTGAGAGTTTA+TGG | + | chr7.3:85713793-85713812 | MS.gene45226:CDS | 40.0% | |
TACAAAGCTTTGCCTCCAAA+TGG | + | chr7.3:85716263-85716282 | MS.gene45226:CDS | 40.0% | |
TAGCCGCGAAGTATGAATAT+GGG | + | chr7.3:85714861-85714880 | MS.gene45226:intron | 40.0% | |
TCACCCATATTCATACTTCG+CGG | - | chr7.3:85714867-85714886 | None:intergenic | 40.0% | |
TCTAGTCTGTCAGCCATAAT+TGG | + | chr7.3:85716204-85716223 | MS.gene45226:intron | 40.0% | |
TCTGATAGTAGATGGTCCAA+CGG | + | chr7.3:85714458-85714477 | MS.gene45226:intron | 40.0% | |
TGCTTCGTGGATATAAATGG+TGG | + | chr7.3:85714417-85714436 | MS.gene45226:intron | 40.0% | |
! | AACACTCTGATTTGCCGAAT+AGG | + | chr7.3:85713701-85713720 | MS.gene45226:CDS | 40.0% |
! | ACCAACTTTGGTTGATGTAG+GGG | + | chr7.3:85715231-85715250 | MS.gene45226:CDS | 40.0% |
! | GCATGTATCCGTCATTGATT+TGG | - | chr7.3:85715161-85715180 | None:intergenic | 40.0% |
! | GGCTTGGTTCGTAGATAAAA+TGG | + | chr7.3:85714341-85714360 | MS.gene45226:intron | 40.0% |
! | TCTAGATCTTCTGGTTGCAA+GGG | - | chr7.3:85716308-85716327 | None:intergenic | 40.0% |
! | TGGAATGGAAAGAAGTGTGA+AGG | + | chr7.3:85716388-85716407 | MS.gene45226:CDS | 40.0% |
! | TTCTAGATCTTCTGGTTGCA+AGG | - | chr7.3:85716309-85716328 | None:intergenic | 40.0% |
!! | AGAAATGGATTACCTGGACA+AGG | - | chr7.3:85715352-85715371 | None:intergenic | 40.0% |
!! | CTATATTTTTGTGGTGGTCG+GGG | - | chr7.3:85714134-85714153 | None:intergenic | 40.0% |
!! | CTCTTCTGTCTGTTTCTACT+CGG | + | chr7.3:85713758-85713777 | MS.gene45226:CDS | 40.0% |
!! | TATGGTACTTGGTGCCAATT+TGG | + | chr7.3:85713564-85713583 | MS.gene45226:CDS | 40.0% |
!! | TTGTTTTGTGGCGTTGTGTT+AGG | - | chr7.3:85714226-85714245 | None:intergenic | 40.0% |
!!! | TGCCTCACAAGTTTGTTTTG+TGG | - | chr7.3:85714238-85714257 | None:intergenic | 40.0% |
AACATACGCTCGAGCCTATT+CGG | - | chr7.3:85713718-85713737 | None:intergenic | 45.0% | |
ACACTCTCAGCTATGGTACT+TGG | + | chr7.3:85713553-85713572 | MS.gene45226:CDS | 45.0% | |
ACCACACCATTGACATAGCA+GGG | - | chr7.3:85713900-85713919 | None:intergenic | 45.0% | |
ATGATGTTTGTCACAGCTGG+TGG | + | chr7.3:85716368-85716387 | MS.gene45226:CDS | 45.0% | |
CACTATGCTACCGTCATCAT+TGG | - | chr7.3:85713785-85713804 | None:intergenic | 45.0% | |
CGCCACAAAACAAACTTGTG+AGG | + | chr7.3:85714233-85714252 | MS.gene45226:intron | 45.0% | |
GAAAATACACCACCTTGTCC+AGG | + | chr7.3:85715337-85715356 | MS.gene45226:CDS | 45.0% | |
GAGAGTTTGGGAAAACGATC+TGG | + | chr7.3:85716416-85716435 | MS.gene45226:CDS | 45.0% | |
GTAGCCGCGAAGTATGAATA+TGG | + | chr7.3:85714860-85714879 | MS.gene45226:intron | 45.0% | |
GTCTGTCAGCCATAATTGGT+CGG | + | chr7.3:85716208-85716227 | MS.gene45226:intron | 45.0% | |
GTTTATGGGATCACACCTTC+TGG | + | chr7.3:85713808-85713827 | MS.gene45226:CDS | 45.0% | |
TACCACACCATTGACATAGC+AGG | - | chr7.3:85713901-85713920 | None:intergenic | 45.0% | |
TCTACTCGGACCAATGATGA+CGG | + | chr7.3:85713772-85713791 | MS.gene45226:CDS | 45.0% | |
TGATGATATGTCCCGCTATC+AGG | - | chr7.3:85714374-85714393 | None:intergenic | 45.0% | |
TTGGTATTCCCTCAAATCCG+TGG | - | chr7.3:85715216-85715235 | None:intergenic | 45.0% | |
! | CCAACTTTGGTTGATGTAGG+GGG | + | chr7.3:85715232-85715251 | MS.gene45226:CDS | 45.0% |
!! | AATGGATTACCTGGACAAGG+TGG | - | chr7.3:85715349-85715368 | None:intergenic | 45.0% |
!! | AATGGTGGATGACCTGATAG+CGG | + | chr7.3:85714359-85714378 | MS.gene45226:intron | 45.0% |
!! | GGCAAATCAGAGTGTTGAGT+TGG | - | chr7.3:85713697-85713716 | None:intergenic | 45.0% |
!! | AAAATTATAAAATTTCATAT+AGG | - | chr7.3:85714753-85714772 | None:intergenic | 5.0% |
!!! | AATTATTATTTTTTTTTTGA+AGG | - | chr7.3:85714698-85714717 | None:intergenic | 5.0% |
!!! | ATTATTATTTTTTTTTTGAA+GGG | - | chr7.3:85714697-85714716 | None:intergenic | 5.0% |
ACCCTGCTATGTCAATGGTG+TGG | + | chr7.3:85713896-85713915 | MS.gene45226:CDS | 50.0% | |
ACGGATCTTAGAGGAGGATC+TGG | + | chr7.3:85714477-85714496 | MS.gene45226:intron | 50.0% | |
ATGACCAGCACTATTGGGCT+TGG | + | chr7.3:85714325-85714344 | MS.gene45226:intron | 50.0% | |
CCCCCTACATCAACCAAAGT+TGG | - | chr7.3:85715235-85715254 | None:intergenic | 50.0% | |
CCCTCATGACCAGCACTATT+GGG | + | chr7.3:85714320-85714339 | MS.gene45226:intron | 50.0% | |
GATGGTCCAACGGATCTTAG+AGG | + | chr7.3:85714468-85714487 | MS.gene45226:intron | 50.0% | |
GTCTCACCCTGCTATGTCAA+TGG | + | chr7.3:85713891-85713910 | MS.gene45226:CDS | 50.0% | |
GTGATATTGGACCTGCTTCG+TGG | + | chr7.3:85714404-85714423 | MS.gene45226:intron | 50.0% | |
GTTTGTCACAGCTGGTGGAA+TGG | + | chr7.3:85716373-85716392 | MS.gene45226:CDS | 50.0% | |
TTCTTGAACAGGTCCCCTTC+TGG | - | chr7.3:85715076-85715095 | None:intergenic | 50.0% | |
TTGATGTAGGGGGTGGAACA+GGG | + | chr7.3:85715242-85715261 | MS.gene45226:CDS | 50.0% | |
! | ACTTTGGTTGATGTAGGGGG+TGG | + | chr7.3:85715235-85715254 | MS.gene45226:CDS | 50.0% |
!! | ATGGTGGATGACCTGATAGC+GGG | + | chr7.3:85714360-85714379 | MS.gene45226:intron | 50.0% |
!! | CCAATAGTGCTGGTCATGAG+GGG | - | chr7.3:85714322-85714341 | None:intergenic | 50.0% |
!! | CCCAATAGTGCTGGTCATGA+GGG | - | chr7.3:85714323-85714342 | None:intergenic | 50.0% |
!! | GATCCTCCTCTAAGATCCGT+TGG | - | chr7.3:85714477-85714496 | None:intergenic | 50.0% |
CCCCTCATGACCAGCACTAT+TGG | + | chr7.3:85714319-85714338 | MS.gene45226:intron | 55.0% | |
CGAACCAAGCCCAATAGTGC+TGG | - | chr7.3:85714332-85714351 | None:intergenic | 55.0% | |
GGTCCAACGGATCTTAGAGG+AGG | + | chr7.3:85714471-85714490 | MS.gene45226:intron | 55.0% | |
GGTGGTCGGGGTTTGAACTT+CGG | - | chr7.3:85714122-85714141 | None:intergenic | 55.0% | |
GTTGATGTAGGGGGTGGAAC+AGG | + | chr7.3:85715241-85715260 | MS.gene45226:CDS | 55.0% | |
!! | GCCCAATAGTGCTGGTCATG+AGG | - | chr7.3:85714324-85714343 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 85713484 | 85716505 | 85713484 | ID=MS.gene45226 |
chr7.3 | mRNA | 85713484 | 85716505 | 85713484 | ID=MS.gene45226.t1;Parent=MS.gene45226 |
chr7.3 | exon | 85713484 | 85713917 | 85713484 | ID=MS.gene45226.t1.exon1;Parent=MS.gene45226.t1 |
chr7.3 | CDS | 85713484 | 85713917 | 85713484 | ID=cds.MS.gene45226.t1;Parent=MS.gene45226.t1 |
chr7.3 | exon | 85715045 | 85715374 | 85715045 | ID=MS.gene45226.t1.exon2;Parent=MS.gene45226.t1 |
chr7.3 | CDS | 85715045 | 85715374 | 85715045 | ID=cds.MS.gene45226.t1;Parent=MS.gene45226.t1 |
chr7.3 | exon | 85716256 | 85716505 | 85716256 | ID=MS.gene45226.t1.exon3;Parent=MS.gene45226.t1 |
chr7.3 | CDS | 85716256 | 85716505 | 85716256 | ID=cds.MS.gene45226.t1;Parent=MS.gene45226.t1 |
Gene Sequence |
Protein sequence |