AlfalfaGEDB | MS.gene45483

M. sativa cultivar XinJiangDaYe / MS.gene45483

KEGG: K10575
GO: -
PFAM: PF00179.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45483.t1	QCE09241.1	80.7	202	29	3	1	194	1	200	9.80E-84	319.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45483.t1	Q42540	92.9	141	10	0	1	141	1	141	4.2e-75	282.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45483.t1	A0A4D6N8S6	80.7	202	29	3	1	194	1	200	7.1e-84	319.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049265	MS.gene45483	0.841068	5.95E-58	-1.69E-46
MS.gene050426	MS.gene45483	0.820952	5.23E-53	-1.69E-46
MS.gene050971	MS.gene45483	-0.814541	1.46E-51	-1.69E-46
MS.gene051552	MS.gene45483	0.809604	1.74E-50	-1.69E-46
MS.gene052128	MS.gene45483	0.885345	8.81E-72	-1.69E-46
MS.gene052702	MS.gene45483	0.8032	3.90E-49	-1.69E-46
MS.gene054290	MS.gene45483	0.802023	6.83E-49	-1.69E-46
MS.gene054884	MS.gene45483	0.823734	1.18E-53	-1.69E-46
MS.gene055206	MS.gene45483	-0.809985	1.44E-50	-1.69E-46
MS.gene055536	MS.gene45483	0.811914	5.52E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45483.t1	MTR_2g096690	100.000	141	0	0	1	141	1	141	1.57e-102	293
MS.gene45483.t1	MTR_2g096690	100.000	141	0	0	1	141	1	141	2.32e-102	292
MS.gene45483.t1	MTR_4g063490	95.745	141	6	0	1	141	1	141	5.03e-89	259
MS.gene45483.t1	MTR_2g096690	99.138	116	1	0	1	116	1	116	1.04e-83	243
MS.gene45483.t1	MTR_8g468530	39.007	141	72	2	1	141	17	143	3.61e-29	107
MS.gene45483.t1	MTR_4g108080	39.007	141	72	2	1	141	1	127	8.97e-29	105
MS.gene45483.t1	MTR_7g116940	39.855	138	69	2	4	141	1	124	4.54e-28	103
MS.gene45483.t1	MTR_4g073240	39.130	138	70	2	4	141	1	124	6.68e-27	100
MS.gene45483.t1	MTR_1g021150	40.152	132	65	2	4	135	1	118	9.12e-27	100
MS.gene45483.t1	MTR_3g062450	39.130	138	70	2	4	141	1	124	1.19e-26	99.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45483.t1	AT5G59300	92.908	141	10	0	1	141	1	141	1.06e-87	255
MS.gene45483.t1	AT3G46460	92.908	141	10	0	1	141	1	141	1.67e-86	253
MS.gene45483.t1	AT3G55380	89.209	139	15	0	3	141	4	142	6.14e-82	241
MS.gene45483.t1	AT3G55380	70.520	173	17	1	3	141	4	176	6.55e-74	222
MS.gene45483.t1	AT3G46460	92.391	92	7	0	50	141	8	99	1.96e-59	182
MS.gene45483.t1	AT3G46460	92.391	92	7	0	50	141	8	99	1.96e-59	182
MS.gene45483.t1	AT2G02760	39.007	141	72	2	1	141	1	127	3.07e-29	106
MS.gene45483.t1	AT2G02760	39.007	141	72	2	1	141	1	127	3.07e-29	106
MS.gene45483.t1	AT2G02760	39.007	141	72	2	1	141	1	127	3.07e-29	106
MS.gene45483.t1	AT2G02760	39.007	141	72	2	1	141	1	127	3.07e-29	106

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Find 58 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTAGCCGATGTGTG+CGG	0.675247	2.1:+6943914	MS.gene45483:CDS
AAGGAGGAGGCTTGCTTGGG+AGG	0.498537	2.1:-6939782	None:intergenic
AATAGCAAGAAACGAGGGGC+CGG	0.538604	2.1:-6943965	None:intergenic
AATGGAGTGTAACCATAATT+GGG	0.465426	2.1:+6939973	MS.gene45483:CDS
ACCAGCGGAAAAGCCATCGA+CGG	0.610363	2.1:-6939925	None:intergenic
ACTGCAGCTTCAACATTTGC+CGG	0.368423	2.1:-6942500	None:intergenic
ACTTACTAAAGTGTATCTGG+TGG	0.687155	2.1:-6939996	None:intergenic
AGAACTTACTAAAGTGTATC+TGG	0.332749	2.1:-6939999	None:intergenic
AGTATCATATCGATGCTTTC+TGG	0.256685	2.1:+6942461	MS.gene45483:CDS
ATATCTATTCTTCATCCTCC+TGG	0.379234	2.1:+6941537	MS.gene45483:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAATAAGCTGAGTAGT+TGG	-	chr2.1:6940942-6940961	None:intergenic	30.0%
AAGATCTGTGAGAAAAAGTA+AGG	-	chr2.1:6939895-6939914	None:intergenic	30.0%
AATGGAGTGTAACCATAATT+GGG	+	chr2.1:6939973-6939992	MS.gene45483:CDS	30.0%
AATTCCAAAACCAATCCAAT+CGG	-	chr2.1:6941046-6941065	None:intergenic	30.0%
AGAACTTACTAAAGTGTATC+TGG	-	chr2.1:6940002-6940021	None:intergenic	30.0%
ATAACTTTACTGAATGTCCT+TGG	+	chr2.1:6942305-6942324	MS.gene45483:intron	30.0%
ATAAGCGATGCAATGAAAAA+AGG	-	chr2.1:6939835-6939854	None:intergenic	30.0%
ATAAGTTGTTTATCCGAACA+GGG	-	chr2.1:6940341-6940360	None:intergenic	30.0%
CTTATATTCATAACTTCTCC+AGG	-	chr2.1:6940547-6940566	None:intergenic	30.0%
CTTTCAATTTCTTGTAGTGA+AGG	+	chr2.1:6941157-6941176	MS.gene45483:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	6939778	6943991	6939778	ID=MS.gene45483
chr2.1	mRNA	6939778	6943991	6939778	ID=MS.gene45483.t1;Parent=MS.gene45483
chr2.1	exon	6939778	6939820	6939778	ID=MS.gene45483.t1.exon1;Parent=MS.gene45483.t1
chr2.1	CDS	6939778	6939820	6939778	ID=cds.MS.gene45483.t1;Parent=MS.gene45483.t1
chr2.1	exon	6939910	6940012	6939910	ID=MS.gene45483.t1.exon2;Parent=MS.gene45483.t1
chr2.1	CDS	6939910	6940012	6939910	ID=cds.MS.gene45483.t1;Parent=MS.gene45483.t1
chr2.1	exon	6941174	6941271	6941174	ID=MS.gene45483.t1.exon3;Parent=MS.gene45483.t1
chr2.1	CDS	6941174	6941271	6941174	ID=cds.MS.gene45483.t1;Parent=MS.gene45483.t1
chr2.1	exon	6941514	6941614	6941514	ID=MS.gene45483.t1.exon4;Parent=MS.gene45483.t1
chr2.1	CDS	6941514	6941614	6941514	ID=cds.MS.gene45483.t1;Parent=MS.gene45483.t1
chr2.1	exon	6942443	6942520	6942443	ID=MS.gene45483.t1.exon5;Parent=MS.gene45483.t1
chr2.1	CDS	6942443	6942520	6942443	ID=cds.MS.gene45483.t1;Parent=MS.gene45483.t1
chr2.1	exon	6943107	6943186	6943107	ID=MS.gene45483.t1.exon6;Parent=MS.gene45483.t1
chr2.1	CDS	6943107	6943186	6943107	ID=cds.MS.gene45483.t1;Parent=MS.gene45483.t1
chr2.1	exon	6943880	6943991	6943880	ID=MS.gene45483.t1.exon7;Parent=MS.gene45483.t1
chr2.1	CDS	6943880	6943991	6943880	ID=cds.MS.gene45483.t1;Parent=MS.gene45483.t1

Gene Sequence

>MS.gene45483

ATGGCCTCCCAAGCAAGCCTCCTCCTTCAAAAACAGCTCAAAGGTAATCTATTCCCTTTTTTCATTGCATCGCTTATTTCAATTTCGCGTCAATTTTCCGCTATTTCTGATTAACCTTACTTTTTCTCACAGATCTTTGTAAACATCCCGTCGATGGCTTTTCCGCTGGTTTAGTCGACGAAACCAACATTTTTGAATGGAGTGTAACCATAATTGGGCCACCAGATACACTTTAGTAAGTTCTTTTTTTTTAATTAATACCCTTTTTTAATTTTTCATTAATTTATATGTTTTTCAATTGTTATTTTGTTTTTTATCTTATAAAATGATCATTTATTGGATTTTCTGTGATGGGGGTTTTGGATTTTTCACTAAAAGATCGTTTTTTTAATTTATACTTATTGGTGGGTTTTCAGAGTTTGGTTCAATTGGTTGGTTTTTGTGATTTTAATTTGCTTTTGAGTCTTTGTATTGATGATATTGTTTCATGAGGATTGAATTGAATATCAAGTAAAAGAAGTGATATTTGAAGGATTGATAAAAAAGAATACAGATTATGGCCCTGTTCGGATAAACAACTTATAGCTCAAGTGCGTATCATGACAAGCGCTTATGTGTAAGCTTACGTAAGTTATTTCGATGCTTATAGCACAAAGCACAAGCACATATCATGATAAGTGCTTATGTGTAAGCTTACATAAGTTATAGGAAAATATAAAATTAAATTGTTTTTGTATAGTTTACGTGCAAAGTTTTGATAAGCTATCCTGGAGAAGTTATGAATATAAGCTGAAAAAAGCTTACGCGAAATGTCATAAGCTGTTTTTATAAGTTCTCCCGAATAGTCTCAAAAAACTTATACCAGTTTATAAGGTCAAATAAAACAGTTATGTTTATTTTATTTTCAATGCAGCTTCTCAGTTGCAAATTATTATGCTTTCCCGGTTTATTGATTATGATATTTATTCTAGGTTTTTTTGTTGGTTTCATTTATTTGCACTGGATTTTCATTAGCTGTAGGATTTGCCTTTTGTTCTTGTTTTACAATATATGCTCCTCATCATTAATTTACTTCCTATGATTGGATTGGTTTTGGACTTTAGTGCTTTAATAGTTTTTGTTTTGTTTACTTTCTGTGATCTTGATAACATCCGAGTTTGACCAACTACTCAGCTTATTTGTTTGCACTGGATTTTCCTTAGCTGTAGGATTTGCTTGTTGTTCTTGTTTTACAATATCTGCTCCTCATCATTAATTTACTTCATCCGATTGGATTGGTTTTGGAATTTAGTGCTTTAATAGTTTTTGTTTTGTTTACTTTCTGTGATCTTAATAACACCAGAGTTTGACTAACCACTCAGCTTATTTGTTTGCCAATGCTTTCAATTTCTTGTAGTGAAGGAGGATTTTTCAATGCCATCATGAGCTTTCCGTCGAACTATCCAAACAGTCCACCATCAGTGAAGTTCACTTCAGAGATATGGCATCCCAATGGTTGGTTTTCTCTCTGATGCACAGATACGTTAAATATTGAGTGTGTCATACTCGACACATCTGTATCCGATACCCGTATTGCAGTAACATCCTATGTTTTTTAAGGAACAACATATTGTCGTTCCCGATACGTTTTGCATCGGATGCTCGTAACTTGTCCGTGCATCATTGGATTTTCTCATTTGTGACATTTCTTTGATTAAAACAGGAAGTTGAATGATGTTGTTTGTTTGTATTTGCAGTATATCCTGATGGGCGGGTTTGCATATCTATTCTTCATCCTCCTGGGGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTACGTGAAAACATAAAACCATAAATTCAATTCGTTTATTTCTGTAGTGTGATTTCTGCTTTTCATTATTCAATTGATATTGCTGGCTAAATCAATCAACTTAGTAATAGAAATGCAGATTAGCAGTGTCTAGTATTCGTCGAGCATGCTTGTATTTAATAGGGTGTGATTTTAAGCAACAATTTATTTACAAACTTCGATAGATGCAAAATACTTGTAAAGGAAGAGAAGTTGATCAGTTCTCATTAATGTATAAAGTGACACTTGTGATCACAATTTACAGAAAGATATTCGTGATCATAACAAAAGTTGTGGGCTTTTCTTTGTTTACGAGGGAGAGAGTTTCTTTTCTTTTGATGCAGATGTATATGATTATGTCATGTTGTATCCGTGATGCATCTCCAACGTATCCGATGACCAATTTTTTTAAAATTAATAAGTTAAAAAGAAATTGGATACTTATGAGATATGCATCCAAGAGTATCCTAGGAGTATCAGTATCCGACCATCACTCATTTTAGAGTATCTGGACGCTAGAGTAGAAGCTTTCTCGGGCATGAGCCTGTAATGTTTACCTGCTATAGACTTGTTGTTTAAGACCTGGCTTGCCTTTTTAACATAACGATTTAATGCCTTACAGCTAATTTAAGTGTTAGTTGTTTCAAAGTTGTTTGACATTAATAAATTACAATAACTTTACTGAATGTCCTTGGGATATGGTATGCCACTTCTTGTCCACCATGAGTGTTTTGACATACTTGCTACTTGTAAATCTTTTAGAACCTGTTTATTTGCTTATGAATAAATTCCACGTATGCTCTCTTGCAGGTAGAGAGTATAGTGTTGAGTATCATATCGATGCTTTCTGGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCAGTAAGTTTGACCTTTTTTCTTATTTACATGATTTTGTTATTGCCATCTTCACCACACTTCTCTTTTTATACTTATTTGCGTCCTAGAGAAGTAAAGGCAAACCGATATTGATCTAGATAATTGTGCAAAGGCTTTGTTTTACTAATAATATGTTATGGACTTGGTTCCTTTATTTACTAGTAAAACACTATGTCCTTGGATTGCTTTAATGCTACATATATTCCAATTATTTATGTAGATATCTCTTTAAGATTGAGTATTTAATATAGTTCAGTTCTGATACGTTGATAATAACTACGGCGTGTCGAGAATGAGACGTGGAATTATATATTATACAAGCATGTATAGTTTAATACTTCTCTAATAATTAGTAGATACGAAAGTGGGATAATTTCTTTGTTTACCAAGTTTGAGTTTTATGAGCGATTGAATACAATTGAAAAATTGATAATATCAATATAGTAGTTTAGGCATTACTCTTTAGGTTTAGACTTTAAACGAAACACAACTTTTGTAATTGAAGCACATAAGAAAATATGAGAATGCTTTTTCTCTTGGCATGTTGGCAGGCTTGGCAATGGGGCAGGTAGGGACGGGCTTTGCTCAACACAACCCTCCCACCCTTCAAAAAAACACTCGACACCCCTTCCTGCCACAAGTTCAGGGGTGAAAATCCCAACTTAGTCCCACAAGAAAATATTAAAACCACACCCTGCTCACCCTAACCCACGTCTTGAATACTTTGAATAATTAGTTATAAAAATAATATTTAGATGTATTTGTACAACAATAATCTTATAACTAATATATCATTTCAAGAAAAGTATAAGACATTTTAAAATGTGTTAAACTAGTAACTACTAGGCATGTCCATACTGATAATACGTGGAATGTCTTGTATGCAAAGGTCACTACTAGTAGTTATTATCAACGGACATCAGAACTTAGCGCCTAATATCTTTTGCCTGTTTTTTATAGCTTTCTTAAAATTGAATTTCTGTTGAGTGATTTTTCCTCTGTTTTAAGATTCCTTTCGGCCAGGCATGTCTATTGAGATCCCTACACTTGGCAAGGGATGTGTAGTATTAGGAATTTAGGAGCCCAATTGTCACCATTAGTGTTGTCAATTGTGGATCGCCGAAAAAAGCTGTTTGTTCAACAATTGTATGTGTCATTTTGAGTACTGAAGGATTTAATATATTATTCTGTTACTTTTTATTATGAAAATTCCTCTGTCCTAAAAGTACACATTGCTGTTGCTATTATCCTAATTGATACAGTGTATAGCACTTCAATCTTGACAGTTTGGAATATTGTTTTGGAACTTTTACTTAGACCTGTGTGATGTTTATATTGCAGAAGGAGTGGAGAGACAGGAGAGACGATTTCAAGAAAAAGGTTAGCCGATGTGTGCGGAAGTCACAGGAAATGTTGTGATTCACAGCCGGCCCCTCGTTTCTTGCTATTGTGA

Protein sequence

>MS.gene45483.t1

MASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAVGTGFAQHNPPTLQKNTRHPFLPQVQGRSGETGETISRKRLADVCGSHRKCCDSQPAPRFLLL