AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45617

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45617.t1 MTR_4g097600 98.524 271 3 1 1 270 1 271 0.0 550
MS.gene45617.t1 MTR_5g014890 63.860 285 73 8 1 270 1 270 1.27e-102 300
MS.gene45617.t1 MTR_1g054285 62.963 189 48 4 68 255 116 283 3.64e-72 223
MS.gene45617.t1 MTR_2g061030 76.119 134 31 1 108 240 180 313 1.79e-67 213
MS.gene45617.t1 MTR_7g093430 76.984 126 27 1 115 240 150 273 1.08e-65 207
MS.gene45617.t1 MTR_5g013010 68.293 164 42 4 79 240 95 250 2.89e-65 206
MS.gene45617.t1 MTR_1g017090 45.847 301 114 9 5 270 2 288 7.76e-65 204
MS.gene45617.t1 MTR_4g100550 66.667 162 41 2 80 240 85 234 1.01e-64 204
MS.gene45617.t1 MTR_8g006705 82.456 114 19 1 126 238 145 258 7.68e-62 197
MS.gene45617.t1 MTR_3g103590 54.124 194 64 6 90 268 117 300 7.21e-50 166
MS.gene45617.t1 MTR_4g084750 63.866 119 37 1 126 238 64 182 1.02e-48 160
MS.gene45617.t1 MTR_2g038625 44.211 190 93 4 54 239 15 195 1.38e-39 137
MS.gene45617.t1 MTR_2g038580 44.211 190 93 4 54 239 15 195 1.38e-39 137
MS.gene45617.t1 MTR_4g126900 59.649 114 42 2 129 238 90 203 3.93e-35 125
MS.gene45617.t1 MTR_5g013010 62.376 101 29 3 79 178 95 187 6.36e-28 106
MS.gene45617.t1 MTR_5g039000 47.664 107 54 1 114 218 62 168 4.36e-21 90.5
MS.gene45617.t1 MTR_7g103340 42.991 107 61 0 108 214 44 150 1.72e-20 87.8
MS.gene45617.t1 MTR_3g080100 35.417 192 112 5 80 261 12 201 3.59e-20 87.4
MS.gene45617.t1 MTR_3g080100 38.365 159 88 4 113 261 4 162 6.80e-20 85.9
MS.gene45617.t1 MTR_8g468210 42.735 117 64 1 102 218 55 168 1.16e-19 86.7
MS.gene45617.t1 MTR_7g010020 46.602 103 51 1 118 216 71 173 5.28e-19 84.3
MS.gene45617.t1 MTR_6g007647 50.000 88 44 0 127 214 33 120 6.63e-19 84.0
MS.gene45617.t1 MTR_1g061660 48.315 89 46 0 127 215 59 147 6.66e-19 83.6
MS.gene45617.t1 MTR_6g007647 50.000 88 44 0 127 214 67 154 7.53e-19 84.3
MS.gene45617.t1 MTR_4g107650 45.455 99 54 0 116 214 84 182 2.58e-17 80.9
MS.gene45617.t1 MTR_8g089895 47.170 106 47 2 118 214 43 148 3.35e-17 80.1
MS.gene45617.t1 MTR_3g086790 37.975 158 85 5 119 265 52 207 4.38e-17 79.7
MS.gene45617.t1 MTR_6g011610 45.192 104 49 2 118 213 86 189 8.59e-17 78.6
MS.gene45617.t1 MTR_5g038280 40.000 135 65 3 87 213 54 180 9.78e-17 79.0
MS.gene45617.t1 MTR_6g011610 45.192 104 49 2 118 213 67 170 1.60e-16 77.4
MS.gene45617.t1 MTR_8g469430 46.809 94 43 1 127 213 89 182 7.67e-16 75.9
MS.gene45617.t1 MTR_5g019680 43.689 103 53 1 119 221 45 142 1.10e-12 65.9
MS.gene45617.t1 MTR_5g019650 42.857 105 58 1 119 221 45 149 1.19e-12 65.9
MS.gene45617.t1 MTR_3g092150 43.011 93 46 1 130 215 41 133 3.41e-12 65.1
MS.gene45617.t1 MTR_8g026960 42.683 82 47 0 131 212 38 119 2.27e-11 62.8
MS.gene45617.t1 MTR_5g029320 35.849 106 68 0 118 223 83 188 5.00e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45617.t1 AT4G37790 61.806 288 82 9 1 270 1 278 2.52e-91 271
MS.gene45617.t1 AT2G22800 58.163 294 79 11 1 270 1 274 2.54e-83 251
MS.gene45617.t1 AT5G06710 61.376 189 56 4 76 254 136 317 4.81e-70 219
MS.gene45617.t1 AT5G47370 57.789 199 74 4 72 264 70 264 1.69e-66 208
MS.gene45617.t1 AT3G60390 60.656 183 57 6 69 238 94 274 1.18e-62 199
MS.gene45617.t1 AT4G17460 60.221 181 64 5 68 241 71 250 4.60e-62 197
MS.gene45617.t1 AT4G16780 75.194 129 30 2 112 239 115 242 1.93e-61 196
MS.gene45617.t1 AT2G44910 79.130 115 23 1 126 239 162 276 6.97e-59 190
MS.gene45617.t1 AT2G01430 54.676 139 56 2 106 239 113 249 2.34e-44 151
MS.gene45617.t1 AT1G70920 52.941 136 57 1 114 249 26 154 1.00e-40 139
MS.gene45617.t1 AT1G70920 56.349 126 48 1 114 239 56 174 1.15e-40 140
MS.gene45617.t1 AT5G06710 59.292 113 29 4 76 178 136 241 4.89e-30 114
MS.gene45617.t1 AT2G01430 50.526 95 40 2 106 195 113 205 1.10e-22 93.2
MS.gene45617.t1 AT1G69780 46.465 99 53 0 116 214 74 172 7.38e-20 87.4
MS.gene45617.t1 AT1G26960 41.964 112 65 0 119 230 63 174 2.17e-19 85.1
MS.gene45617.t1 AT5G03790 35.374 147 79 2 127 257 77 223 3.68e-18 81.6
MS.gene45617.t1 AT5G65310 45.000 100 48 1 122 214 67 166 1.57e-16 78.2
MS.gene45617.t1 AT3G01470 45.161 93 44 1 127 212 68 160 1.78e-16 77.4
MS.gene45617.t1 AT5G65310 45.000 100 48 1 122 214 49 148 1.94e-16 77.8
MS.gene45617.t1 AT2G18550 44.000 100 56 0 114 213 48 147 7.98e-16 74.7
MS.gene45617.t1 AT5G03790 47.253 91 48 0 127 217 77 167 9.56e-16 73.9
MS.gene45617.t1 AT5G15150 42.478 113 56 3 113 216 96 208 1.30e-15 75.9
MS.gene45617.t1 AT4G36740 44.681 94 52 0 120 213 49 142 2.37e-15 73.6
MS.gene45617.t1 AT4G36740 44.681 94 52 0 120 213 48 141 2.40e-15 73.6
MS.gene45617.t1 AT4G40060 44.330 97 47 1 125 214 57 153 2.51e-15 74.7
MS.gene45617.t1 AT3G01220 43.269 104 53 2 119 216 77 180 2.86e-15 74.3
MS.gene45617.t1 AT1G27045 46.875 96 44 1 127 215 68 163 4.71e-15 73.2
MS.gene45617.t1 AT1G27045 40.909 132 62 3 127 250 68 191 5.84e-15 72.4
MS.gene45617.t1 AT1G27045 57.576 66 28 0 127 192 17 82 8.74e-15 70.9
MS.gene45617.t1 AT1G27045 57.576 66 28 0 127 192 25 90 9.52e-15 71.2
MS.gene45617.t1 AT1G27045 57.576 66 28 0 127 192 25 90 9.52e-15 71.2
MS.gene45617.t1 AT2G36610 40.816 98 50 1 126 215 70 167 3.36e-14 69.7
MS.gene45617.t1 AT2G22430 43.750 96 50 1 125 216 60 155 7.44e-14 70.5
MS.gene45617.t1 AT2G46680 43.011 93 49 1 130 218 35 127 1.54e-13 68.9
MS.gene45617.t1 AT2G46680 41.111 90 53 0 130 219 35 124 1.55e-13 68.9
MS.gene45617.t1 AT5G06710 51.163 86 25 4 76 151 136 214 4.06e-12 64.7
MS.gene45617.t1 AT5G06710 51.163 86 25 4 76 151 136 214 4.06e-12 64.7
MS.gene45617.t1 AT3G61890 38.947 95 44 1 130 210 33 127 2.70e-11 62.4
MS.gene45617.t1 AT5G66700 44.872 78 43 0 115 192 59 136 6.51e-11 61.2
MS.gene45617.t1 AT1G79840 43.373 83 46 1 126 207 102 184 9.69e-11 62.4

Find 58 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGAGAAATTGCTCTTAT+TGG 0.187884 8.4:+24838486 None:intergenic
CTAGGTGGTGGTGGTGTTAA+TGG 0.243245 8.4:-24838517 MS.gene45617:CDS
TCAGGCCTTCAACTTATTCT+AGG 0.257483 8.4:-24839751 MS.gene45617:CDS
ATGTTTCACAACATTTCTTT+AGG 0.284664 8.4:+24838662 None:intergenic
GGTACCTGGCTCTACGGTTC+TGG 0.335278 8.4:+24839172 None:intergenic
TTATGATTACTTGAGGAATA+AGG 0.345806 8.4:+24839670 None:intergenic
AAGCATAGCAGATTGATCTT+TGG 0.351274 8.4:+24839390 None:intergenic
GGATGGTGGTGTGTCTTGTT+TGG 0.360529 8.4:+24839711 None:intergenic
TGTTAGCAGTGAATTAGAAA+TGG 0.445208 8.4:-24839500 MS.gene45617:CDS
CACATGAAGGACACATAGTA+AGG 0.448920 8.4:+24838545 None:intergenic
AGGCTTTGTAACGTTGTTGT+TGG 0.454137 8.4:+24839690 None:intergenic
AAACATTAACAGAAGAGAAT+AGG 0.467293 8.4:-24838645 MS.gene45617:CDS
GCTGAACCATCTTTAACGTT+GGG 0.469771 8.4:-24839637 MS.gene45617:CDS
AAAGGAGGTGCAAGAATTGA+AGG 0.482533 8.4:-24838614 MS.gene45617:CDS
AGCTGAACCATCTTTAACGT+TGG 0.482898 8.4:-24839638 MS.gene45617:CDS
CTAAGCCTAGAATAAGTTGA+AGG 0.488952 8.4:+24839746 None:intergenic
TTGTTTCATCTTTCTCTAGT+GGG 0.496061 8.4:-24839543 MS.gene45617:CDS
TTCTTCATAGTAACTCTTGG+TGG 0.498912 8.4:+24839609 None:intergenic
AGGTGTTAGATTTAACTCTC+TGG 0.498987 8.4:+24839215 None:intergenic
TTCATCTTTCTCTAGTGGGA+GGG 0.505690 8.4:-24839539 MS.gene45617:CDS
CACCTCGACAAGTTGAGGTC+TGG 0.514656 8.4:-24839197 MS.gene45617:CDS
GTAAGGGTAGCTGCTGGCAT+AGG 0.516800 8.4:+24838562 None:intergenic
GTTGTTTCATCTTTCTCTAG+TGG 0.516924 8.4:-24839544 MS.gene45617:CDS
AGGTTCTTCATAGTAACTCT+TGG 0.520099 8.4:+24839606 None:intergenic
GGTTCCAGAACCGTAGAGCC+AGG 0.526669 8.4:-24839176 MS.gene45617:intron
TTTCATCTTTCTCTAGTGGG+AGG 0.528407 8.4:-24839540 MS.gene45617:CDS
GTGAAGGGGTTGTAAAAGTG+AGG 0.536068 8.4:+24838463 None:intergenic
TTTGTAACGTTGTTGTTGGA+TGG 0.545023 8.4:+24839694 None:intergenic
GATAAACCCAACGTTAAAGA+TGG 0.545369 8.4:+24839631 None:intergenic
AGAGAATAGGAGGCTACAAA+AGG 0.550932 8.4:-24838632 MS.gene45617:CDS
AGAAATGGAAACGACGGAGA+TGG 0.553541 8.4:-24839485 MS.gene45617:CDS
TGCTGGCATAGGCATATACA+AGG 0.554332 8.4:+24838573 None:intergenic
TGTATAGGTACCTGGCTCTA+CGG 0.565795 8.4:+24839166 None:intergenic
AAAGCTGAAGCAAACAGAAG+TGG 0.566126 8.4:-24838695 MS.gene45617:CDS
TGTGAGAGACTAGGTGGTGG+TGG 0.571619 8.4:-24838526 MS.gene45617:CDS
TCTAACACCTCGACAAGTTG+AGG 0.578186 8.4:-24839202 MS.gene45617:CDS
CATTAACAGAAGAGAATAGG+AGG 0.587793 8.4:-24838642 MS.gene45617:CDS
ATAGTTGTTATGATTACTTG+AGG 0.592747 8.4:+24839663 None:intergenic
AAGACGGTGCCACTGCAGCT+AGG 0.595899 8.4:-24839429 MS.gene45617:CDS
CCACCTAGTCTCTCACATGA+AGG 0.597382 8.4:+24838532 None:intergenic
AAGCTTCTTCCTAGCTGCAG+TGG 0.601402 8.4:+24839420 None:intergenic
CACATAGTAAGGGTAGCTGC+TGG 0.601478 8.4:+24838556 None:intergenic
CAAGATGCTAGTAACAACTC+AGG 0.601537 8.4:-24839769 MS.gene45617:CDS
GTAACGTTGTTGTTGGATGG+TGG 0.602624 8.4:+24839697 None:intergenic
GAATAGGAGGCTACAAAAGG+AGG 0.603538 8.4:-24838629 MS.gene45617:CDS
GGTGGTGGTGGTGTTAATGG+TGG 0.605462 8.4:-24838514 MS.gene45617:CDS
TGCTGCTGAAGAATTTGTGA+AGG 0.622725 8.4:+24838447 None:intergenic
AACCAGACCTCAACTTGTCG+AGG 0.626268 8.4:+24839195 None:intergenic
TGAATTAGAAATGGAAACGA+CGG 0.634393 8.4:-24839491 MS.gene45617:CDS
GCTGCTGAAGAATTTGTGAA+GGG 0.658168 8.4:+24838448 None:intergenic
ACATGAAGGACACATAGTAA+GGG 0.658983 8.4:+24838546 None:intergenic
CCTTCATGTGAGAGACTAGG+TGG 0.665742 8.4:-24838532 MS.gene45617:CDS
GATGAAACAACGCTGTGATG+AGG 0.669037 8.4:+24839556 None:intergenic
TCATGTGAGAGACTAGGTGG+TGG 0.669612 8.4:-24838529 MS.gene45617:CDS
ATCAGCGATGAAGATGAAGA+CGG 0.672472 8.4:-24839445 MS.gene45617:CDS
TGTCCTTCATGTGAGAGACT+AGG 0.681664 8.4:-24838535 MS.gene45617:CDS
CTGCTGAAGAATTTGTGAAG+GGG 0.685286 8.4:+24838449 None:intergenic
GCTGGCATAGGCATATACAA+GGG 0.757470 8.4:+24838574 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTGATAAATAAATG+AGG + chr8.4:24838956-24838975 None:intergenic 10.0%
!! ATTATCTTCAAATTAATTAA+GGG - chr8.4:24839292-24839311 MS.gene45617:intron 10.0%
!! TATTATCTTCAAATTAATTA+AGG - chr8.4:24839291-24839310 MS.gene45617:intron 10.0%
!!! TGTAATATTAAGATTATTTT+TGG - chr8.4:24839483-24839502 MS.gene45617:CDS 10.0%
!! AATACATATACTATTGTAAA+TGG - chr8.4:24839340-24839359 MS.gene45617:intron 15.0%
!! AATTAAATTAAACTCAACTA+TGG - chr8.4:24839113-24839132 MS.gene45617:intron 15.0%
!! ATTTACAATAGTATATGTAT+TGG + chr8.4:24839341-24839360 None:intergenic 15.0%
!! ATTTGAAGATAATATTTCAT+TGG + chr8.4:24839285-24839304 None:intergenic 15.0%
!!! TATTAAGATTATTTTTGGTT+TGG - chr8.4:24839488-24839507 MS.gene45617:CDS 15.0%
!!! TATTTATCAAATTTTTGTGA+TGG - chr8.4:24838960-24838979 MS.gene45617:intron 15.0%
!! TTATGCATATATGTATGTAT+AGG + chr8.4:24839077-24839096 None:intergenic 20.0%
!!! ATTATTTTTGGTTTGGATTT+TGG - chr8.4:24839495-24839514 MS.gene45617:CDS 20.0%
!!! TTATTTTTGGTTTGGATTTT+GGG - chr8.4:24839496-24839515 MS.gene45617:CDS 20.0%
!!! TTTTCAATTGAAGTTATTCT+GGG + chr8.4:24839370-24839389 None:intergenic 20.0%
!!! TTTTTCAATTGAAGTTATTC+TGG + chr8.4:24839371-24839390 None:intergenic 20.0%
! AAACATTAACAGAAGAGAAT+AGG - chr8.4:24839580-24839599 MS.gene45617:CDS 25.0%
! ATAGTTGTTATGATTACTTG+AGG + chr8.4:24838565-24838584 None:intergenic 25.0%
! ATGTTTCACAACATTTCTTT+AGG + chr8.4:24839566-24839585 None:intergenic 25.0%
! CATATACTATTGTAAATGGA+TGG - chr8.4:24839344-24839363 MS.gene45617:intron 25.0%
! CCAATATGAAGATTATGTAA+TGG + chr8.4:24839161-24839180 None:intergenic 25.0%
! CCATTACATAATCTTCATAT+TGG - chr8.4:24839158-24839177 MS.gene45617:intron 25.0%
! GAGATTATGATTATGATTAC+AGG + chr8.4:24838894-24838913 None:intergenic 25.0%
! TTATGATTACTTGAGGAATA+AGG + chr8.4:24838558-24838577 None:intergenic 25.0%
!! GTGTCGACAAAAAAAATTAT+GGG - chr8.4:24839436-24839455 MS.gene45617:CDS 25.0%
!! TGTGTCGACAAAAAAAATTA+TGG - chr8.4:24839435-24839454 MS.gene45617:CDS 25.0%
!!! TCAACTATGGTTTTAAATTG+CGG - chr8.4:24839126-24839145 MS.gene45617:intron 25.0%
CTTAGAGAAATTGCTCTTAT+TGG + chr8.4:24839742-24839761 None:intergenic 30.0%
GGTGATATATGATATTTACG+TGG + chr8.4:24839320-24839339 None:intergenic 30.0%
GTTTGTGTAGAAAAATCAAG+AGG + chr8.4:24838642-24838661 None:intergenic 30.0%
TATATGTATGTATAGGTACC+TGG + chr8.4:24839070-24839089 None:intergenic 30.0%
TGAATTAGAAATGGAAACGA+CGG - chr8.4:24838734-24838753 MS.gene45617:intron 30.0%
TGTTAGCAGTGAATTAGAAA+TGG - chr8.4:24838725-24838744 MS.gene45617:intron 30.0%
TTGTTTCATCTTTCTCTAGT+GGG - chr8.4:24838682-24838701 MS.gene45617:CDS 30.0%
!!! TGCGAATATAACTGTTTTTG+AGG + chr8.4:24839230-24839249 None:intergenic 30.0%
AAGCATAGCAGATTGATCTT+TGG + chr8.4:24838838-24838857 None:intergenic 35.0%
ACATGAAGGACACATAGTAA+GGG + chr8.4:24839682-24839701 None:intergenic 35.0%
AGGTGTTAGATTTAACTCTC+TGG + chr8.4:24839013-24839032 None:intergenic 35.0%
AGGTTCTTCATAGTAACTCT+TGG + chr8.4:24838622-24838641 None:intergenic 35.0%
CATTAACAGAAGAGAATAGG+AGG - chr8.4:24839583-24839602 MS.gene45617:CDS 35.0%
GATAAACCCAACGTTAAAGA+TGG + chr8.4:24838597-24838616 None:intergenic 35.0%
TTCTTCATAGTAACTCTTGG+TGG + chr8.4:24838619-24838638 None:intergenic 35.0%
! CTAAGCCTAGAATAAGTTGA+AGG + chr8.4:24838482-24838501 None:intergenic 35.0%
! GTTGTTTCATCTTTCTCTAG+TGG - chr8.4:24838681-24838700 MS.gene45617:CDS 35.0%
! TTTGTAACGTTGTTGTTGGA+TGG + chr8.4:24838534-24838553 None:intergenic 35.0%
AAAGCTGAAGCAAACAGAAG+TGG - chr8.4:24839530-24839549 MS.gene45617:CDS 40.0%
AGAGAATAGGAGGCTACAAA+AGG - chr8.4:24839593-24839612 MS.gene45617:CDS 40.0%
AGCTGAACCATCTTTAACGT+TGG - chr8.4:24838587-24838606 MS.gene45617:CDS 40.0%
ATCAGCGATGAAGATGAAGA+CGG - chr8.4:24838780-24838799 MS.gene45617:intron 40.0%
CAAGATGCTAGTAACAACTC+AGG - chr8.4:24838456-24838475 MS.gene45617:CDS 40.0%
CACATGAAGGACACATAGTA+AGG + chr8.4:24839683-24839702 None:intergenic 40.0%
CTGCTGAAGAATTTGTGAAG+GGG + chr8.4:24839779-24839798 None:intergenic 40.0%
GCTGAACCATCTTTAACGTT+GGG - chr8.4:24838588-24838607 MS.gene45617:CDS 40.0%
GCTGCTGAAGAATTTGTGAA+GGG + chr8.4:24839780-24839799 None:intergenic 40.0%
GTACTTAAATTGCAGTACGC+AGG + chr8.4:24839257-24839276 None:intergenic 40.0%
TCAGGCCTTCAACTTATTCT+AGG - chr8.4:24838474-24838493 MS.gene45617:CDS 40.0%
TGCTGCTGAAGAATTTGTGA+AGG + chr8.4:24839781-24839800 None:intergenic 40.0%
TTCATCTTTCTCTAGTGGGA+GGG - chr8.4:24838686-24838705 MS.gene45617:CDS 40.0%
TTTCATCTTTCTCTAGTGGG+AGG - chr8.4:24838685-24838704 MS.gene45617:CDS 40.0%
! AAAGGAGGTGCAAGAATTGA+AGG - chr8.4:24839611-24839630 MS.gene45617:CDS 40.0%
! AGGCTTTGTAACGTTGTTGT+TGG + chr8.4:24838538-24838557 None:intergenic 40.0%
AGAAATGGAAACGACGGAGA+TGG - chr8.4:24838740-24838759 MS.gene45617:intron 45.0%
GAATAGGAGGCTACAAAAGG+AGG - chr8.4:24839596-24839615 MS.gene45617:CDS 45.0%
GATGAAACAACGCTGTGATG+AGG + chr8.4:24838672-24838691 None:intergenic 45.0%
GCTGGCATAGGCATATACAA+GGG + chr8.4:24839654-24839673 None:intergenic 45.0%
GTGAAGGGGTTGTAAAAGTG+AGG + chr8.4:24839765-24839784 None:intergenic 45.0%
TCTAACACCTCGACAAGTTG+AGG - chr8.4:24839023-24839042 MS.gene45617:intron 45.0%
TGCTGGCATAGGCATATACA+AGG + chr8.4:24839655-24839674 None:intergenic 45.0%
TGTCCTTCATGTGAGAGACT+AGG - chr8.4:24839690-24839709 MS.gene45617:CDS 45.0%
! GTAACGTTGTTGTTGGATGG+TGG + chr8.4:24838531-24838550 None:intergenic 45.0%
!! TGTATAGGTACCTGGCTCTA+CGG + chr8.4:24839062-24839081 None:intergenic 45.0%
AACCAGACCTCAACTTGTCG+AGG + chr8.4:24839033-24839052 None:intergenic 50.0%
AAGCTTCTTCCTAGCTGCAG+TGG + chr8.4:24838808-24838827 None:intergenic 50.0%
CACATAGTAAGGGTAGCTGC+TGG + chr8.4:24839672-24839691 None:intergenic 50.0%
CCACCTAGTCTCTCACATGA+AGG + chr8.4:24839696-24839715 None:intergenic 50.0%
CCTTCATGTGAGAGACTAGG+TGG - chr8.4:24839693-24839712 MS.gene45617:CDS 50.0%
TCATGTGAGAGACTAGGTGG+TGG - chr8.4:24839696-24839715 MS.gene45617:CDS 50.0%
! GGATGGTGGTGTGTCTTGTT+TGG + chr8.4:24838517-24838536 None:intergenic 50.0%
!! CTAGGTGGTGGTGGTGTTAA+TGG - chr8.4:24839708-24839727 MS.gene45617:CDS 50.0%
GTAAGGGTAGCTGCTGGCAT+AGG + chr8.4:24839666-24839685 None:intergenic 55.0%
! CACCTCGACAAGTTGAGGTC+TGG - chr8.4:24839028-24839047 MS.gene45617:intron 55.0%
! TGTGAGAGACTAGGTGGTGG+TGG - chr8.4:24839699-24839718 MS.gene45617:CDS 55.0%
!! GGTGGTGGTGGTGTTAATGG+TGG - chr8.4:24839711-24839730 MS.gene45617:CDS 55.0%
GGTTCCAGAACCGTAGAGCC+AGG - chr8.4:24839049-24839068 MS.gene45617:intron 60.0%
!! AAGACGGTGCCACTGCAGCT+AGG - chr8.4:24838796-24838815 MS.gene45617:intron 60.0%
!! GGTACCTGGCTCTACGGTTC+TGG + chr8.4:24839056-24839075 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 24838441 24839806 24838441 ID=MS.gene45617
chr8.4 mRNA 24838441 24839806 24838441 ID=MS.gene45617.t1;Parent=MS.gene45617
chr8.4 exon 24839354 24839806 24839354 ID=MS.gene45617.t1.exon1;Parent=MS.gene45617.t1
chr8.4 CDS 24839354 24839806 24839354 ID=cds.MS.gene45617.t1;Parent=MS.gene45617.t1
chr8.4 exon 24839177 24839256 24839177 ID=MS.gene45617.t1.exon2;Parent=MS.gene45617.t1
chr8.4 CDS 24839177 24839256 24839177 ID=cds.MS.gene45617.t1;Parent=MS.gene45617.t1
chr8.4 exon 24838441 24838720 24838441 ID=MS.gene45617.t1.exon3;Parent=MS.gene45617.t1
chr8.4 CDS 24838441 24838720 24838441 ID=cds.MS.gene45617.t1;Parent=MS.gene45617.t1
Gene Sequence

>MS.gene45617

ATGGGTCTTAATAATCAAGATGCTAGTAACAACTCAGGCCTTCAACTTATTCTAGGCTTAGCTCTTACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAGCCTTATTCCTCAAGTAATCATAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCCACCAAGAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAACTCACCTCATCACAGCGTTGTTTCATCTTTCTCTAGTGGGAGGGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACGACGGAGATGGAGAGAGTTTCTTCGAGAATCAGCGATGAAGATGAAGACGGTGCCACTGCAGCTAGGAAGAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGTTTCAAAGAACACAGCACTCTCAATCCTGTAATCATAATCATAATCTCTTTCTATAGTTACATATCTTATTATTATTTTAATTTTTTCCTCATTTATTTATCAAATTTTTGTGATGGATTTACAGAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTAACACCTCGACAAGTTGAGGTCTGGTTCCAGAACCGTAGAGCCAGGTACCTATACATACATATATGCATAATATATTTAATTTATTAAATTAAATTAAACTCAACTATGGTTTTAAATTGCGGTTGCAGTTACCATTACATAATCTTCATATTGGTAGAAACTGCAACGACTGCACTGTAATTGTGATGTCGTTGCAGAAACCTCAAAAACAGTTATATTCGCAATTGCCTGCGTACTGCAATTTAAGTACTACAGCCAATGAAATATTATCTTCAAATTAATTAAGGGTACCACGTAAATATCATATATCACCAATACATATACTATTGTAAATGGATGGCCCAGAATAACTTCAATTGAAAAAAAAAATTAATCATTATTCATGTATTTACGTACACATATTATAAATGTGTCGACAAAAAAAATTATGGGTTTGATAAATATATATTAAATATATGTAATATTAAGATTATTTTTGGTTTGGATTTTGGGTGTAACAGAACAAAGCTGAAGCAAACAGAAGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGAAGAGAATAGGAGGCTACAAAAGGAGGTGCAAGAATTGAAGGCACTAAAACTAGCACAACCCTTGTATATGCCTATGCCAGCAGCTACCCTTACTATGTGTCCTTCATGTGAGAGACTAGGTGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGAGCAATTTCTCTAAGCCTCACTTTTACAACCCCTTCACAAATTCTTCAGCAGCATGTTGA
Protein sequence

>MS.gene45617.t1

MGLNNQDASNNSGLQLILGLALTLTKQDTPPSNNNVTKPYSSSNHNNYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEMERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGGGVNGGSSNKSNFSKPHFYNPFTNSSAAC