Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45691.t1 | XP_003606871.2 | 95.3 | 301 | 14 | 0 | 1 | 301 | 1 | 301 | 2.70E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45691.t1 | Q9XI99 | 45.4 | 229 | 120 | 2 | 69 | 292 | 52 | 280 | 6.0e-54 | 212.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45691.t1 | I3STE5 | 95.3 | 301 | 14 | 0 | 1 | 301 | 1 | 301 | 1.9e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene45691 | -0.804328 | 2.28E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene45691 | 0.822613 | 2.16E-53 | -1.69E-46 |
| MS.gene052143 | MS.gene45691 | 0.801328 | 9.48E-49 | -1.69E-46 |
| MS.gene053097 | MS.gene45691 | 0.822723 | 2.03E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene45691 | -0.827636 | 1.40E-54 | -1.69E-46 |
| MS.gene055251 | MS.gene45691 | 0.822069 | 2.89E-53 | -1.69E-46 |
| MS.gene055729 | MS.gene45691 | 0.818996 | 1.46E-52 | -1.69E-46 |
| MS.gene055730 | MS.gene45691 | 0.823341 | 1.46E-53 | -1.69E-46 |
| MS.gene055731 | MS.gene45691 | 0.80557 | 1.25E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene45691 | -0.823812 | 1.13E-53 | -1.69E-46 |
| MS.gene056266 | MS.gene45691 | -0.825646 | 4.19E-54 | -1.69E-46 |
| MS.gene056694 | MS.gene45691 | 0.878961 | 1.84E-69 | -1.69E-46 |
| MS.gene056697 | MS.gene45691 | 0.824441 | 8.06E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene45691 | 0.831468 | 1.64E-55 | -1.69E-46 |
| MS.gene061044 | MS.gene45691 | 0.845522 | 3.85E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45691.t1 | MTR_4g069680 | 96.284 | 296 | 11 | 0 | 6 | 301 | 1 | 296 | 0.0 | 603 |
| MS.gene45691.t1 | MTR_3g116410 | 68.364 | 275 | 76 | 1 | 27 | 301 | 22 | 285 | 1.60e-136 | 388 |
| MS.gene45691.t1 | MTR_3g107830 | 71.486 | 249 | 69 | 1 | 55 | 301 | 17 | 265 | 2.37e-132 | 376 |
| MS.gene45691.t1 | MTR_3g116380 | 52.016 | 248 | 114 | 2 | 44 | 291 | 60 | 302 | 6.63e-93 | 278 |
| MS.gene45691.t1 | MTR_3g116270 | 46.460 | 226 | 118 | 1 | 66 | 291 | 283 | 505 | 1.51e-69 | 224 |
| MS.gene45691.t1 | MTR_4g069040 | 43.096 | 239 | 131 | 3 | 55 | 291 | 274 | 509 | 8.24e-68 | 220 |
| MS.gene45691.t1 | MTR_4g069570 | 43.478 | 230 | 125 | 4 | 64 | 291 | 109 | 335 | 9.74e-67 | 212 |
| MS.gene45691.t1 | MTR_3g116320 | 44.690 | 226 | 122 | 1 | 66 | 291 | 465 | 687 | 1.95e-65 | 218 |
| MS.gene45691.t1 | MTR_4g069550 | 46.119 | 219 | 113 | 4 | 75 | 291 | 247 | 462 | 1.32e-64 | 210 |
| MS.gene45691.t1 | MTR_4g069520 | 43.836 | 219 | 118 | 3 | 75 | 291 | 507 | 722 | 1.98e-60 | 204 |
| MS.gene45691.t1 | MTR_4g069520 | 43.836 | 219 | 118 | 3 | 75 | 291 | 493 | 708 | 2.37e-60 | 204 |
| MS.gene45691.t1 | MTR_1g008500 | 41.850 | 227 | 127 | 4 | 67 | 292 | 163 | 385 | 9.76e-60 | 195 |
| MS.gene45691.t1 | MTR_3g109490 | 43.668 | 229 | 121 | 5 | 67 | 292 | 99 | 322 | 5.51e-59 | 191 |
| MS.gene45691.t1 | MTR_1g008530 | 41.256 | 223 | 125 | 5 | 72 | 292 | 6 | 224 | 2.21e-56 | 182 |
| MS.gene45691.t1 | MTR_6g086530 | 44.019 | 209 | 111 | 4 | 87 | 292 | 1 | 206 | 9.46e-56 | 179 |
| MS.gene45691.t1 | MTR_0312s0030 | 41.410 | 227 | 126 | 4 | 67 | 292 | 105 | 325 | 1.77e-54 | 180 |
| MS.gene45691.t1 | MTR_1g007520 | 41.410 | 227 | 126 | 4 | 67 | 292 | 105 | 325 | 1.77e-54 | 180 |
| MS.gene45691.t1 | MTR_1g008510 | 39.754 | 244 | 131 | 6 | 50 | 292 | 98 | 326 | 1.78e-54 | 180 |
| MS.gene45691.t1 | MTR_1g008560 | 41.071 | 224 | 126 | 5 | 71 | 292 | 111 | 330 | 3.20e-54 | 179 |
| MS.gene45691.t1 | MTR_1g008590 | 40.969 | 227 | 127 | 4 | 67 | 292 | 105 | 325 | 1.27e-53 | 178 |
| MS.gene45691.t1 | MTR_1g008450 | 39.823 | 226 | 130 | 4 | 67 | 292 | 94 | 313 | 1.61e-51 | 172 |
| MS.gene45691.t1 | MTR_1g008470 | 38.739 | 222 | 130 | 4 | 71 | 292 | 85 | 300 | 2.86e-50 | 168 |
| MS.gene45691.t1 | MTR_1g008460 | 38.261 | 230 | 129 | 5 | 63 | 292 | 81 | 297 | 6.08e-49 | 165 |
| MS.gene45691.t1 | MTR_1g008580 | 41.379 | 174 | 97 | 4 | 118 | 290 | 1 | 170 | 4.91e-43 | 145 |
| MS.gene45691.t1 | MTR_8g064500 | 33.484 | 221 | 134 | 6 | 75 | 290 | 159 | 371 | 3.84e-33 | 125 |
| MS.gene45691.t1 | MTR_4g068420 | 43.165 | 139 | 58 | 3 | 155 | 291 | 1 | 120 | 1.26e-32 | 117 |
| MS.gene45691.t1 | MTR_8g064530 | 33.484 | 221 | 132 | 7 | 75 | 289 | 429 | 640 | 9.68e-31 | 121 |
| MS.gene45691.t1 | MTR_8g064560 | 33.333 | 222 | 133 | 7 | 75 | 290 | 412 | 624 | 4.65e-30 | 119 |
| MS.gene45691.t1 | MTR_5g034320 | 32.883 | 222 | 134 | 7 | 75 | 290 | 415 | 627 | 5.41e-29 | 116 |
| MS.gene45691.t1 | MTR_3g078090 | 31.532 | 222 | 137 | 7 | 75 | 290 | 413 | 625 | 9.42e-26 | 107 |
| MS.gene45691.t1 | MTR_4g133840 | 27.638 | 199 | 124 | 4 | 94 | 290 | 7 | 187 | 2.80e-22 | 92.0 |
| MS.gene45691.t1 | MTR_5g033350 | 27.895 | 190 | 118 | 5 | 112 | 289 | 16 | 198 | 2.33e-18 | 82.0 |
| MS.gene45691.t1 | MTR_5g033340 | 28.959 | 221 | 144 | 6 | 74 | 289 | 165 | 377 | 3.10e-18 | 84.3 |
| MS.gene45691.t1 | MTR_5g033340 | 28.025 | 157 | 102 | 4 | 121 | 273 | 4 | 153 | 2.98e-12 | 67.0 |
| MS.gene45691.t1 | MTR_8g046000 | 35.811 | 148 | 85 | 6 | 144 | 291 | 85 | 222 | 7.55e-18 | 81.3 |
| MS.gene45691.t1 | MTR_2g081590 | 29.730 | 222 | 120 | 9 | 75 | 293 | 73 | 261 | 1.02e-17 | 81.6 |
| MS.gene45691.t1 | MTR_2g081610 | 29.333 | 225 | 117 | 11 | 75 | 293 | 73 | 261 | 1.03e-17 | 81.6 |
| MS.gene45691.t1 | MTR_8g445140 | 34.043 | 141 | 83 | 5 | 151 | 291 | 172 | 302 | 1.09e-16 | 79.3 |
| MS.gene45691.t1 | MTR_5g033330 | 28.507 | 221 | 145 | 6 | 74 | 289 | 404 | 616 | 1.69e-16 | 80.1 |
| MS.gene45691.t1 | MTR_5g033330 | 28.780 | 205 | 133 | 6 | 74 | 273 | 196 | 392 | 1.04e-13 | 71.6 |
| MS.gene45691.t1 | MTR_5g033330 | 27.586 | 174 | 107 | 5 | 112 | 273 | 18 | 184 | 2.30e-13 | 70.9 |
| MS.gene45691.t1 | MTR_8g445170 | 34.043 | 141 | 83 | 5 | 151 | 291 | 253 | 383 | 1.95e-16 | 79.3 |
| MS.gene45691.t1 | MTR_8g045890 | 34.483 | 145 | 85 | 6 | 151 | 295 | 301 | 435 | 1.28e-15 | 77.0 |
| MS.gene45691.t1 | MTR_8g045890 | 34.483 | 145 | 85 | 6 | 151 | 295 | 342 | 476 | 1.70e-15 | 77.0 |
| MS.gene45691.t1 | MTR_8g045890 | 34.483 | 145 | 85 | 6 | 151 | 295 | 379 | 513 | 1.80e-15 | 77.0 |
| MS.gene45691.t1 | MTR_1g045860 | 31.126 | 151 | 89 | 5 | 144 | 291 | 121 | 259 | 2.13e-14 | 72.0 |
| MS.gene45691.t1 | MTR_8g045880 | 33.784 | 148 | 88 | 5 | 144 | 291 | 177 | 314 | 5.62e-14 | 71.6 |
| MS.gene45691.t1 | MTR_8g045880 | 33.784 | 148 | 88 | 5 | 144 | 291 | 212 | 349 | 8.20e-14 | 71.2 |
| MS.gene45691.t1 | MTR_8g045880 | 33.784 | 148 | 88 | 5 | 144 | 291 | 214 | 351 | 9.44e-14 | 71.2 |
| MS.gene45691.t1 | MTR_8g075930 | 38.095 | 84 | 47 | 3 | 200 | 280 | 6 | 87 | 2.12e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45691.t1 | AT1G49320 | 45.415 | 229 | 120 | 2 | 69 | 292 | 52 | 280 | 1.33e-68 | 215 |
| MS.gene45691.t1 | AT5G25610 | 40.000 | 225 | 130 | 4 | 67 | 289 | 168 | 389 | 3.63e-51 | 173 |
| MS.gene45691.t1 | AT1G70370 | 33.628 | 226 | 127 | 6 | 75 | 290 | 411 | 623 | 2.47e-30 | 120 |
| MS.gene45691.t1 | AT1G70370 | 33.628 | 226 | 127 | 6 | 75 | 290 | 411 | 623 | 2.47e-30 | 120 |
| MS.gene45691.t1 | AT1G23760 | 32.353 | 204 | 120 | 5 | 92 | 290 | 429 | 619 | 6.30e-28 | 113 |
| MS.gene45691.t1 | AT1G60390 | 30.222 | 225 | 134 | 7 | 75 | 289 | 409 | 620 | 3.64e-26 | 108 |
Find 62 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTCTTGGCCAAAATTT+AGG | 0.117666 | 4.4:-38020289 | None:intergenic |
| ACACCCTGAACTTCCAATTT+TGG | 0.159002 | 4.4:-38020862 | None:intergenic |
| TTTCATATGGGTTCCAAAAT+TGG | 0.163908 | 4.4:+38020849 | MS.gene45691:CDS |
| CATGTTTCATTTCAGGTTCT+TGG | 0.168453 | 4.4:+38020778 | MS.gene45691:CDS |
| CTTCAACTTCCCCTAAATTT+TGG | 0.169638 | 4.4:+38020278 | MS.gene45691:CDS |
| ACATGGTCATGTTTCATTTC+AGG | 0.187970 | 4.4:+38020771 | MS.gene45691:CDS |
| GATTTCACTCAAACCATTCT+TGG | 0.227601 | 4.4:+38020484 | MS.gene45691:CDS |
| GTTTCACTTGTTGGTGATAA+TGG | 0.231201 | 4.4:+38020697 | MS.gene45691:CDS |
| GGAAGTTTGTTCAATGAAAA+AGG | 0.231998 | 4.4:-38020325 | None:intergenic |
| TATCTCTTGGCCAAAATTTA+GGG | 0.266762 | 4.4:-38020288 | None:intergenic |
| TATTCTCACTTTCTTGACTA+TGG | 0.275068 | 4.4:-38020663 | None:intergenic |
| GAATTTCACTTCTCCTTTGA+TGG | 0.307340 | 4.4:-38020434 | None:intergenic |
| GGAAGTTGAAGGGTCTCTTT+TGG | 0.310572 | 4.4:-38020266 | None:intergenic |
| TTTCACTTGTTGGTGATAAT+GGG | 0.318089 | 4.4:+38020698 | MS.gene45691:CDS |
| CTGAAAAGTGACACTTGATT+TGG | 0.319135 | 4.4:-38020548 | None:intergenic |
| TGTTGGTGATAATGGGGATT+TGG | 0.320872 | 4.4:+38020705 | MS.gene45691:CDS |
| GGTTCCAAAATTGGAAGTTC+AGG | 0.332466 | 4.4:+38020858 | MS.gene45691:CDS |
| TTCCAGCTGATAATTTCATA+TGG | 0.349895 | 4.4:+38020836 | MS.gene45691:CDS |
| GTGTGACATGCCACCATCTT+TGG | 0.354478 | 4.4:-38020610 | None:intergenic |
| TCATATGGATACTTCTCATT+GGG | 0.365983 | 4.4:+38020747 | MS.gene45691:CDS |
| CAGGTTCTTGGTGTTGTGCC+AGG | 0.389898 | 4.4:+38020790 | MS.gene45691:CDS |
| AAGGGTATCTACCATGGCTT+TGG | 0.394842 | 4.4:-38020392 | None:intergenic |
| TGGCAATAGAAAACAGCATA+AGG | 0.408624 | 4.4:-38020643 | None:intergenic |
| ATATATAGAGTTTCACTTGT+TGG | 0.415560 | 4.4:+38020688 | MS.gene45691:CDS |
| AATTTCACTTCTCCTTTGAT+GGG | 0.416780 | 4.4:-38020433 | None:intergenic |
| GTCATATGGATACTTCTCAT+TGG | 0.421442 | 4.4:+38020746 | MS.gene45691:CDS |
| ACCTTGAAAGACTTAAAAGT+TGG | 0.422790 | 4.4:+38020220 | MS.gene45691:CDS |
| TCTACCATGGCTTTGGCTTG+TGG | 0.427864 | 4.4:-38020385 | None:intergenic |
| TCACATGGATCCTTCTGTTA+TGG | 0.431305 | 4.4:+38020189 | MS.gene45691:CDS |
| AGCTATGGTTGTTTGTCATA+TGG | 0.433565 | 4.4:+38020732 | MS.gene45691:CDS |
| GTTTGCTCTCACATTCTGTA+AGG | 0.443520 | 4.4:-38020411 | None:intergenic |
| AGGATCTCAGATATAAACTT+TGG | 0.448641 | 4.4:-38019880 | None:intergenic |
| AGTGAATCAGCTTTATCTCT+TGG | 0.451780 | 4.4:-38020301 | None:intergenic |
| TGGGGATTTGGTGGAAGCTA+TGG | 0.459502 | 4.4:+38020717 | MS.gene45691:CDS |
| TCCAGCTGATAATTTCATAT+GGG | 0.459838 | 4.4:+38020837 | MS.gene45691:CDS |
| TGACACACATTAGAACTTCC+TGG | 0.463418 | 4.4:-38020808 | None:intergenic |
| CCTTGAAAGACTTAAAAGTT+GGG | 0.465337 | 4.4:+38020221 | MS.gene45691:CDS |
| CAAAATTTAGGGGAAGTTGA+AGG | 0.467776 | 4.4:-38020277 | None:intergenic |
| TGGTGATAATGGGGATTTGG+TGG | 0.472374 | 4.4:+38020708 | MS.gene45691:CDS |
| CTATATTAGACAAGATTATG+AGG | 0.485497 | 4.4:+38020578 | MS.gene45691:CDS |
| TGGAACAGAAAGCAAACTCT+TGG | 0.493149 | 4.4:+38020096 | MS.gene45691:CDS |
| GGCAATAGAAAACAGCATAA+GGG | 0.512658 | 4.4:-38020642 | None:intergenic |
| ATAGTCAAGAAAGTGAGAAT+AGG | 0.513839 | 4.4:+38020665 | MS.gene45691:CDS |
| GTTCCAAAATTGGAAGTTCA+GGG | 0.515552 | 4.4:+38020859 | MS.gene45691:CDS |
| ACCCATATGAAATTATCAGC+TGG | 0.518839 | 4.4:-38020838 | None:intergenic |
| GAGGATTTCAGCTCCAAAGA+TGG | 0.529926 | 4.4:+38020597 | MS.gene45691:CDS |
| TAGAAAACAGCATAAGGGTA+AGG | 0.533811 | 4.4:-38020637 | None:intergenic |
| TTTGCTCTCACATTCTGTAA+GGG | 0.540182 | 4.4:-38020410 | None:intergenic |
| TTCACTTGTTGGTGATAATG+GGG | 0.549004 | 4.4:+38020699 | MS.gene45691:CDS |
| GATACTTCTCATTGGGGACA+TGG | 0.551200 | 4.4:+38020754 | MS.gene45691:CDS |
| AGCAGAGCAAGAGAATTAGC+TGG | 0.551256 | 4.4:+38020076 | MS.gene45691:CDS |
| GTACTAGTAGATGAAGAAAG+AGG | 0.558137 | 4.4:-38019900 | None:intergenic |
| AAAATTTAGGGGAAGTTGAA+GGG | 0.570464 | 4.4:-38020276 | None:intergenic |
| TGTGAGAGCAAACCCATCAA+AGG | 0.590120 | 4.4:+38020421 | MS.gene45691:CDS |
| ATCTCTTGGCCAAAATTTAG+GGG | 0.592699 | 4.4:-38020287 | None:intergenic |
| GTGAAGAACACCATAACAGA+AGG | 0.608036 | 4.4:-38020199 | None:intergenic |
| CTCTCCACAAGCCAAAGCCA+TGG | 0.622773 | 4.4:+38020381 | MS.gene45691:CDS |
| CATATGGATACTTCTCATTG+GGG | 0.635326 | 4.4:+38020748 | MS.gene45691:CDS |
| TTCTGTAAGGGTATCTACCA+TGG | 0.635870 | 4.4:-38020398 | None:intergenic |
| TGCACATAATCACAATCACA+TGG | 0.646984 | 4.4:+38020174 | MS.gene45691:CDS |
| GATTTCAGCTCCAAAGATGG+TGG | 0.658692 | 4.4:+38020600 | MS.gene45691:CDS |
| TCATCTACTAGTACTAATCA+CGG | 0.682328 | 4.4:+38019909 | MS.gene45691:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTGCAGATTTTTTA+TGG | + | chr4.4:38020052-38020071 | MS.gene45691:intron | 15.0% |
| !!! | TCTATTTCTATATTCAAATA+TGG | + | chr4.4:38019975-38019994 | MS.gene45691:intron | 15.0% |
| !!! | ATTTTTTTCTTTCCTTTTCT+TGG | + | chr4.4:38019949-38019968 | MS.gene45691:intron | 20.0% |
| ! | ATATATAGAGTTTCACTTGT+TGG | + | chr4.4:38020688-38020707 | MS.gene45691:CDS | 25.0% |
| ! | ATCATTTGAAAAACCAAGAA+TGG | - | chr4.4:38020500-38020519 | None:intergenic | 25.0% |
| ! | CTATATTAGACAAGATTATG+AGG | + | chr4.4:38020578-38020597 | MS.gene45691:CDS | 25.0% |
| AAAATTTAGGGGAAGTTGAA+GGG | - | chr4.4:38020279-38020298 | None:intergenic | 30.0% | |
| AATTTCACTTCTCCTTTGAT+GGG | - | chr4.4:38020436-38020455 | None:intergenic | 30.0% | |
| ACCTTGAAAGACTTAAAAGT+TGG | + | chr4.4:38020220-38020239 | MS.gene45691:CDS | 30.0% | |
| AGAAATAGAGTTCCAAGAAA+AGG | - | chr4.4:38019964-38019983 | None:intergenic | 30.0% | |
| AGGATCTCAGATATAAACTT+TGG | - | chr4.4:38019883-38019902 | None:intergenic | 30.0% | |
| ATAGTCAAGAAAGTGAGAAT+AGG | + | chr4.4:38020665-38020684 | MS.gene45691:CDS | 30.0% | |
| CCTTGAAAGACTTAAAAGTT+GGG | + | chr4.4:38020221-38020240 | MS.gene45691:CDS | 30.0% | |
| TATCTCTTGGCCAAAATTTA+GGG | - | chr4.4:38020291-38020310 | None:intergenic | 30.0% | |
| TATTCTCACTTTCTTGACTA+TGG | - | chr4.4:38020666-38020685 | None:intergenic | 30.0% | |
| TCATATGGATACTTCTCATT+GGG | + | chr4.4:38020747-38020766 | MS.gene45691:CDS | 30.0% | |
| TCATCTACTAGTACTAATCA+CGG | + | chr4.4:38019909-38019928 | MS.gene45691:CDS | 30.0% | |
| TCCAGCTGATAATTTCATAT+GGG | + | chr4.4:38020837-38020856 | MS.gene45691:CDS | 30.0% | |
| TTATCTCTTGGCCAAAATTT+AGG | - | chr4.4:38020292-38020311 | None:intergenic | 30.0% | |
| TTCCAGCTGATAATTTCATA+TGG | + | chr4.4:38020836-38020855 | MS.gene45691:CDS | 30.0% | |
| TTTCATATGGGTTCCAAAAT+TGG | + | chr4.4:38020849-38020868 | MS.gene45691:CDS | 30.0% | |
| ! | GGAAGTTTGTTCAATGAAAA+AGG | - | chr4.4:38020328-38020347 | None:intergenic | 30.0% |
| !! | TTTCACTTGTTGGTGATAAT+GGG | + | chr4.4:38020698-38020717 | MS.gene45691:CDS | 30.0% |
| ACATGGTCATGTTTCATTTC+AGG | + | chr4.4:38020771-38020790 | MS.gene45691:CDS | 35.0% | |
| ACCCATATGAAATTATCAGC+TGG | - | chr4.4:38020841-38020860 | None:intergenic | 35.0% | |
| AGCTATGGTTGTTTGTCATA+TGG | + | chr4.4:38020732-38020751 | MS.gene45691:CDS | 35.0% | |
| ATCTCTTGGCCAAAATTTAG+GGG | - | chr4.4:38020290-38020309 | None:intergenic | 35.0% | |
| CAAAATTTAGGGGAAGTTGA+AGG | - | chr4.4:38020280-38020299 | None:intergenic | 35.0% | |
| CATATGGATACTTCTCATTG+GGG | + | chr4.4:38020748-38020767 | MS.gene45691:CDS | 35.0% | |
| CTGAAAAGTGACACTTGATT+TGG | - | chr4.4:38020551-38020570 | None:intergenic | 35.0% | |
| GAATTTCACTTCTCCTTTGA+TGG | - | chr4.4:38020437-38020456 | None:intergenic | 35.0% | |
| GATTTCACTCAAACCATTCT+TGG | + | chr4.4:38020484-38020503 | MS.gene45691:CDS | 35.0% | |
| GGCAATAGAAAACAGCATAA+GGG | - | chr4.4:38020645-38020664 | None:intergenic | 35.0% | |
| GTACTAGTAGATGAAGAAAG+AGG | - | chr4.4:38019903-38019922 | None:intergenic | 35.0% | |
| GTCATATGGATACTTCTCAT+TGG | + | chr4.4:38020746-38020765 | MS.gene45691:CDS | 35.0% | |
| GTTCCAAAATTGGAAGTTCA+GGG | + | chr4.4:38020859-38020878 | MS.gene45691:CDS | 35.0% | |
| TAGAAAACAGCATAAGGGTA+AGG | - | chr4.4:38020640-38020659 | None:intergenic | 35.0% | |
| TGCACATAATCACAATCACA+TGG | + | chr4.4:38020174-38020193 | MS.gene45691:CDS | 35.0% | |
| TGGCAATAGAAAACAGCATA+AGG | - | chr4.4:38020646-38020665 | None:intergenic | 35.0% | |
| TTTGCTCTCACATTCTGTAA+GGG | - | chr4.4:38020413-38020432 | None:intergenic | 35.0% | |
| ! | AGTGAATCAGCTTTATCTCT+TGG | - | chr4.4:38020304-38020323 | None:intergenic | 35.0% |
| ! | CTTCAACTTCCCCTAAATTT+TGG | + | chr4.4:38020278-38020297 | MS.gene45691:CDS | 35.0% |
| !! | CATGTTTCATTTCAGGTTCT+TGG | + | chr4.4:38020778-38020797 | MS.gene45691:CDS | 35.0% |
| !! | CCCAACTTTTAAGTCTTTCA+AGG | - | chr4.4:38020224-38020243 | None:intergenic | 35.0% |
| !! | GAGAAGATTTTGAGAAGAGT+TGG | - | chr4.4:38020349-38020368 | None:intergenic | 35.0% |
| !! | GTTTCACTTGTTGGTGATAA+TGG | + | chr4.4:38020697-38020716 | MS.gene45691:CDS | 35.0% |
| !! | TTCACTTGTTGGTGATAATG+GGG | + | chr4.4:38020699-38020718 | MS.gene45691:CDS | 35.0% |
| GGTTCCAAAATTGGAAGTTC+AGG | + | chr4.4:38020858-38020877 | MS.gene45691:CDS | 40.0% | |
| GTGAAGAACACCATAACAGA+AGG | - | chr4.4:38020202-38020221 | None:intergenic | 40.0% | |
| GTTTGCTCTCACATTCTGTA+AGG | - | chr4.4:38020414-38020433 | None:intergenic | 40.0% | |
| TCACATGGATCCTTCTGTTA+TGG | + | chr4.4:38020189-38020208 | MS.gene45691:CDS | 40.0% | |
| TGACACACATTAGAACTTCC+TGG | - | chr4.4:38020811-38020830 | None:intergenic | 40.0% | |
| TGGAACAGAAAGCAAACTCT+TGG | + | chr4.4:38020096-38020115 | MS.gene45691:CDS | 40.0% | |
| ! | AAGTTGAAGGGTCTCTTTTG+GGG | - | chr4.4:38020267-38020286 | None:intergenic | 40.0% |
| ! | ACACCCTGAACTTCCAATTT+TGG | - | chr4.4:38020865-38020884 | None:intergenic | 40.0% |
| ! | GAAGTTGAAGGGTCTCTTTT+GGG | - | chr4.4:38020268-38020287 | None:intergenic | 40.0% |
| ! | GAGCTTTGCAATTTAGAGTG+AGG | - | chr4.4:38020029-38020048 | None:intergenic | 40.0% |
| !! | TGTTGGTGATAATGGGGATT+TGG | + | chr4.4:38020705-38020724 | MS.gene45691:CDS | 40.0% |
| !! | TTCTGTAAGGGTATCTACCA+TGG | - | chr4.4:38020401-38020420 | None:intergenic | 40.0% |
| AGCAGAGCAAGAGAATTAGC+TGG | + | chr4.4:38020076-38020095 | MS.gene45691:CDS | 45.0% | |
| GAGGATTTCAGCTCCAAAGA+TGG | + | chr4.4:38020597-38020616 | MS.gene45691:CDS | 45.0% | |
| GATACTTCTCATTGGGGACA+TGG | + | chr4.4:38020754-38020773 | MS.gene45691:CDS | 45.0% | |
| GATTTCAGCTCCAAAGATGG+TGG | + | chr4.4:38020600-38020619 | MS.gene45691:CDS | 45.0% | |
| TGTGAGAGCAAACCCATCAA+AGG | + | chr4.4:38020421-38020440 | MS.gene45691:CDS | 45.0% | |
| ! | GGAAGTTGAAGGGTCTCTTT+TGG | - | chr4.4:38020269-38020288 | None:intergenic | 45.0% |
| !! | AAGGGTATCTACCATGGCTT+TGG | - | chr4.4:38020395-38020414 | None:intergenic | 45.0% |
| !! | TGGTGATAATGGGGATTTGG+TGG | + | chr4.4:38020708-38020727 | MS.gene45691:CDS | 45.0% |
| GTGTGACATGCCACCATCTT+TGG | - | chr4.4:38020613-38020632 | None:intergenic | 50.0% | |
| !! | TCTACCATGGCTTTGGCTTG+TGG | - | chr4.4:38020388-38020407 | None:intergenic | 50.0% |
| !! | TGGGGATTTGGTGGAAGCTA+TGG | + | chr4.4:38020717-38020736 | MS.gene45691:CDS | 50.0% |
| CTCTCCACAAGCCAAAGCCA+TGG | + | chr4.4:38020381-38020400 | MS.gene45691:CDS | 55.0% | |
| !! | CAGGTTCTTGGTGTTGTGCC+AGG | + | chr4.4:38020790-38020809 | MS.gene45691:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38019859 | 38020897 | 38019859 | ID=MS.gene45691 |
| chr4.4 | mRNA | 38019859 | 38020897 | 38019859 | ID=MS.gene45691.t1;Parent=MS.gene45691 |
| chr4.4 | exon | 38019859 | 38019930 | 38019859 | ID=MS.gene45691.t1.exon1;Parent=MS.gene45691.t1 |
| chr4.4 | CDS | 38019859 | 38019930 | 38019859 | ID=cds.MS.gene45691.t1;Parent=MS.gene45691.t1 |
| chr4.4 | exon | 38020064 | 38020897 | 38020064 | ID=MS.gene45691.t1.exon2;Parent=MS.gene45691.t1 |
| chr4.4 | CDS | 38020064 | 38020897 | 38020064 | ID=cds.MS.gene45691.t1;Parent=MS.gene45691.t1 |
| Gene Sequence |
| Protein sequence |
