Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46048.t1 | XP_003623204.1 | 97.3 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 6.00E-119 | 436.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46048.t1 | P32110 | 67.7 | 223 | 67 | 2 | 1 | 218 | 1 | 223 | 1.2e-78 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46048.t1 | G7L6H8 | 97.3 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 4.3e-119 | 436.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene46048 | 0.826127 | 3.22E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene46048 | 0.829481 | 5.03E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene46048 | 0.805319 | 1.41E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene46048 | 0.813816 | 2.11E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene46048 | 0.822928 | 1.82E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene46048 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene46048 | 0.80906 | 2.28E-50 | -1.69E-46 |
| MS.gene055141 | MS.gene46048 | 0.837002 | 6.72E-57 | -1.69E-46 |
| MS.gene056677 | MS.gene46048 | 0.823895 | 1.08E-53 | -1.69E-46 |
| MS.gene058492 | MS.gene46048 | 0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene059774 | MS.gene46048 | 0.803473 | 3.43E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene46048 | 0.802915 | 4.47E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene46048 | 0.813207 | 2.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46048.t1 | MTR_7g065680 | 97.285 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 4.83e-159 | 439 |
| MS.gene46048.t1 | MTR_7g065630 | 84.163 | 221 | 35 | 0 | 1 | 221 | 19 | 239 | 1.95e-136 | 382 |
| MS.gene46048.t1 | MTR_7g065710 | 81.905 | 210 | 35 | 1 | 1 | 210 | 1 | 207 | 1.15e-126 | 357 |
| MS.gene46048.t1 | MTR_7g065700 | 87.143 | 210 | 27 | 0 | 1 | 210 | 1 | 210 | 2.16e-125 | 354 |
| MS.gene46048.t1 | MTR_7g065590 | 64.865 | 222 | 74 | 1 | 1 | 218 | 1 | 222 | 6.67e-103 | 297 |
| MS.gene46048.t1 | MTR_7g065660 | 65.778 | 225 | 73 | 1 | 1 | 221 | 1 | 225 | 2.36e-100 | 290 |
| MS.gene46048.t1 | MTR_7g065230 | 67.431 | 218 | 70 | 1 | 1 | 218 | 1 | 217 | 1.04e-98 | 286 |
| MS.gene46048.t1 | MTR_7g065600 | 64.865 | 222 | 74 | 1 | 1 | 218 | 1 | 222 | 1.32e-98 | 286 |
| MS.gene46048.t1 | MTR_7g065720 | 65.158 | 221 | 72 | 2 | 1 | 216 | 1 | 221 | 4.54e-97 | 282 |
| MS.gene46048.t1 | MTR_7g065740 | 61.504 | 226 | 82 | 2 | 1 | 221 | 1 | 226 | 3.22e-94 | 275 |
| MS.gene46048.t1 | MTR_7g065290 | 62.557 | 219 | 78 | 1 | 1 | 215 | 1 | 219 | 1.95e-93 | 273 |
| MS.gene46048.t1 | MTR_7g065265 | 62.963 | 216 | 76 | 1 | 1 | 212 | 1 | 216 | 4.29e-91 | 267 |
| MS.gene46048.t1 | MTR_7g065750 | 61.504 | 226 | 82 | 2 | 1 | 221 | 1 | 226 | 8.84e-91 | 266 |
| MS.gene46048.t1 | MTR_7g065270 | 60.648 | 216 | 81 | 1 | 1 | 212 | 1 | 216 | 1.89e-88 | 260 |
| MS.gene46048.t1 | MTR_7g065640 | 60.633 | 221 | 73 | 1 | 1 | 221 | 1 | 207 | 9.39e-87 | 255 |
| MS.gene46048.t1 | MTR_4g019790 | 56.889 | 225 | 93 | 1 | 1 | 221 | 1 | 225 | 3.82e-85 | 252 |
| MS.gene46048.t1 | MTR_7g065260 | 61.435 | 223 | 81 | 2 | 1 | 218 | 8 | 230 | 7.65e-83 | 246 |
| MS.gene46048.t1 | MTR_4g019780 | 57.798 | 218 | 86 | 3 | 2 | 214 | 3 | 219 | 9.09e-83 | 246 |
| MS.gene46048.t1 | MTR_6g080440 | 46.154 | 208 | 106 | 3 | 7 | 209 | 3 | 209 | 2.33e-59 | 186 |
| MS.gene46048.t1 | MTR_3g099757 | 47.321 | 224 | 106 | 4 | 5 | 220 | 3 | 222 | 7.53e-59 | 185 |
| MS.gene46048.t1 | MTR_8g087410 | 40.090 | 222 | 127 | 3 | 5 | 221 | 4 | 224 | 1.02e-55 | 177 |
| MS.gene46048.t1 | MTR_8g087425 | 43.192 | 213 | 115 | 3 | 5 | 212 | 3 | 214 | 6.53e-53 | 170 |
| MS.gene46048.t1 | MTR_5g040430 | 41.441 | 222 | 118 | 4 | 1 | 211 | 1 | 221 | 1.26e-52 | 169 |
| MS.gene46048.t1 | MTR_1g090150 | 43.458 | 214 | 112 | 4 | 6 | 212 | 2 | 213 | 8.30e-52 | 167 |
| MS.gene46048.t1 | MTR_1g090070 | 41.704 | 223 | 119 | 4 | 7 | 220 | 9 | 229 | 9.57e-52 | 167 |
| MS.gene46048.t1 | MTR_1g090060 | 41.509 | 212 | 112 | 4 | 7 | 209 | 3 | 211 | 2.87e-49 | 160 |
| MS.gene46048.t1 | MTR_1g115195 | 44.608 | 204 | 102 | 4 | 7 | 201 | 3 | 204 | 1.11e-48 | 159 |
| MS.gene46048.t1 | MTR_4g059730 | 39.720 | 214 | 119 | 4 | 6 | 211 | 3 | 214 | 1.18e-47 | 156 |
| MS.gene46048.t1 | MTR_1g090100 | 41.509 | 212 | 114 | 4 | 8 | 211 | 3 | 212 | 8.19e-47 | 154 |
| MS.gene46048.t1 | MTR_5g037380 | 40.541 | 222 | 120 | 3 | 7 | 216 | 5 | 226 | 6.93e-46 | 152 |
| MS.gene46048.t1 | MTR_2g070150 | 48.148 | 162 | 79 | 4 | 6 | 165 | 3 | 161 | 5.15e-45 | 149 |
| MS.gene46048.t1 | MTR_2g070130 | 42.718 | 206 | 107 | 7 | 6 | 204 | 3 | 204 | 8.46e-45 | 149 |
| MS.gene46048.t1 | MTR_1g090090 | 39.048 | 210 | 118 | 4 | 7 | 208 | 3 | 210 | 1.27e-43 | 146 |
| MS.gene46048.t1 | MTR_2g070140 | 39.796 | 196 | 109 | 5 | 20 | 209 | 1 | 193 | 6.17e-43 | 144 |
| MS.gene46048.t1 | MTR_3g467420 | 40.609 | 197 | 112 | 5 | 16 | 208 | 18 | 213 | 8.66e-42 | 141 |
| MS.gene46048.t1 | MTR_2g070210 | 37.915 | 211 | 120 | 6 | 6 | 208 | 3 | 210 | 1.25e-41 | 141 |
| MS.gene46048.t1 | MTR_2g070200 | 44.785 | 163 | 86 | 3 | 6 | 166 | 3 | 163 | 5.93e-41 | 139 |
| MS.gene46048.t1 | MTR_8g056940 | 47.853 | 163 | 80 | 4 | 6 | 166 | 3 | 162 | 9.83e-41 | 139 |
| MS.gene46048.t1 | MTR_4g124130 | 44.211 | 190 | 96 | 6 | 4 | 186 | 1 | 187 | 1.09e-39 | 136 |
| MS.gene46048.t1 | MTR_2g070180 | 37.561 | 205 | 119 | 5 | 6 | 204 | 3 | 204 | 1.41e-39 | 135 |
| MS.gene46048.t1 | MTR_8g061950 | 37.788 | 217 | 123 | 4 | 7 | 211 | 5 | 221 | 1.90e-39 | 135 |
| MS.gene46048.t1 | MTR_2g070120 | 36.946 | 203 | 123 | 4 | 6 | 204 | 3 | 204 | 4.50e-39 | 134 |
| MS.gene46048.t1 | MTR_3g467430 | 38.278 | 209 | 120 | 5 | 6 | 208 | 8 | 213 | 1.04e-38 | 134 |
| MS.gene46048.t1 | MTR_2g070070 | 36.866 | 217 | 128 | 5 | 7 | 217 | 4 | 217 | 1.59e-38 | 133 |
| MS.gene46048.t1 | MTR_2g070060 | 36.058 | 208 | 124 | 5 | 7 | 208 | 4 | 208 | 2.17e-37 | 130 |
| MS.gene46048.t1 | MTR_5g076900 | 38.647 | 207 | 122 | 4 | 6 | 208 | 5 | 210 | 8.12e-37 | 129 |
| MS.gene46048.t1 | MTR_0186s0030 | 47.143 | 140 | 72 | 2 | 6 | 144 | 3 | 141 | 1.31e-34 | 120 |
| MS.gene46048.t1 | MTR_2g070110 | 36.866 | 217 | 127 | 6 | 7 | 217 | 4 | 216 | 3.44e-34 | 122 |
| MS.gene46048.t1 | MTR_2g072120 | 40.580 | 69 | 39 | 2 | 51 | 118 | 2 | 69 | 2.33e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46048.t1 | AT3G09270 | 52.036 | 221 | 98 | 5 | 5 | 218 | 4 | 223 | 1.88e-69 | 212 |
| MS.gene46048.t1 | AT2G29420 | 45.000 | 220 | 115 | 3 | 6 | 220 | 8 | 226 | 3.01e-64 | 199 |
| MS.gene46048.t1 | AT2G29450 | 45.205 | 219 | 111 | 4 | 6 | 215 | 5 | 223 | 7.16e-55 | 175 |
| MS.gene46048.t1 | AT2G29480 | 46.575 | 219 | 104 | 5 | 1 | 210 | 1 | 215 | 1.28e-54 | 174 |
| MS.gene46048.t1 | AT2G29490 | 44.196 | 224 | 118 | 4 | 1 | 218 | 1 | 223 | 1.45e-54 | 174 |
| MS.gene46048.t1 | AT2G29460 | 44.907 | 216 | 112 | 4 | 1 | 210 | 1 | 215 | 2.46e-52 | 168 |
| MS.gene46048.t1 | AT2G29470 | 41.778 | 225 | 123 | 5 | 1 | 218 | 1 | 224 | 2.95e-52 | 168 |
| MS.gene46048.t1 | AT2G29440 | 41.818 | 220 | 121 | 4 | 5 | 218 | 4 | 222 | 1.05e-49 | 162 |
| MS.gene46048.t1 | AT1G10370 | 41.232 | 211 | 111 | 4 | 1 | 200 | 1 | 209 | 4.11e-46 | 152 |
| MS.gene46048.t1 | AT1G59700 | 44.348 | 230 | 113 | 7 | 6 | 220 | 5 | 234 | 7.80e-46 | 152 |
| MS.gene46048.t1 | AT1G59670 | 42.995 | 207 | 106 | 5 | 6 | 200 | 5 | 211 | 3.02e-45 | 150 |
| MS.gene46048.t1 | AT1G27140 | 38.667 | 225 | 121 | 5 | 3 | 212 | 2 | 224 | 1.91e-44 | 149 |
| MS.gene46048.t1 | AT1G69930 | 38.991 | 218 | 121 | 5 | 5 | 210 | 10 | 227 | 4.02e-44 | 148 |
| MS.gene46048.t1 | AT1G10360 | 38.350 | 206 | 116 | 4 | 6 | 200 | 4 | 209 | 7.98e-43 | 144 |
| MS.gene46048.t1 | AT1G78340 | 46.429 | 168 | 87 | 3 | 6 | 171 | 3 | 169 | 1.02e-42 | 144 |
| MS.gene46048.t1 | AT1G27130 | 38.288 | 222 | 125 | 5 | 3 | 212 | 2 | 223 | 1.59e-42 | 143 |
| MS.gene46048.t1 | AT1G78320 | 39.130 | 207 | 117 | 5 | 4 | 204 | 1 | 204 | 9.65e-42 | 141 |
| MS.gene46048.t1 | AT1G78370 | 39.409 | 203 | 118 | 5 | 10 | 208 | 7 | 208 | 6.47e-41 | 139 |
| MS.gene46048.t1 | AT1G17180 | 40.887 | 203 | 115 | 5 | 6 | 204 | 3 | 204 | 1.32e-40 | 138 |
| MS.gene46048.t1 | AT1G17170 | 38.889 | 216 | 126 | 5 | 6 | 217 | 3 | 216 | 1.61e-40 | 138 |
| MS.gene46048.t1 | AT1G78380 | 39.706 | 204 | 114 | 5 | 7 | 204 | 4 | 204 | 2.99e-40 | 137 |
| MS.gene46048.t1 | AT1G53680 | 36.967 | 211 | 128 | 5 | 1 | 206 | 1 | 211 | 9.45e-39 | 134 |
| MS.gene46048.t1 | AT1G78360 | 39.535 | 215 | 117 | 7 | 1 | 208 | 1 | 209 | 2.38e-38 | 132 |
| MS.gene46048.t1 | AT5G62480 | 39.407 | 236 | 117 | 9 | 4 | 217 | 1 | 232 | 4.70e-38 | 132 |
| MS.gene46048.t1 | AT1G69920 | 37.850 | 214 | 111 | 7 | 5 | 201 | 32 | 240 | 4.61e-37 | 130 |
| MS.gene46048.t1 | AT1G17190 | 38.710 | 186 | 109 | 5 | 5 | 186 | 3 | 187 | 3.81e-36 | 127 |
| MS.gene46048.t1 | AT3G43800 | 38.537 | 205 | 117 | 7 | 5 | 201 | 3 | 206 | 5.31e-36 | 127 |
| MS.gene46048.t1 | AT1G74590 | 36.453 | 203 | 116 | 5 | 7 | 198 | 7 | 207 | 1.70e-31 | 115 |
| MS.gene46048.t1 | AT1G78320 | 32.039 | 206 | 106 | 5 | 4 | 204 | 1 | 177 | 1.05e-25 | 99.4 |
| MS.gene46048.t1 | AT5G62480 | 32.340 | 235 | 109 | 9 | 4 | 217 | 1 | 206 | 3.91e-21 | 87.8 |
| MS.gene46048.t1 | AT5G62480 | 32.340 | 235 | 108 | 9 | 4 | 217 | 1 | 205 | 5.19e-21 | 87.4 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGATCATTAGGCAAAAT+AGG | 0.209722 | 7.2:-42907436 | None:intergenic |
| TCAAATACAATCCAGTTTAT+AGG | 0.216244 | 7.2:+42907326 | MS.gene46048:CDS |
| ACTGTTTCTCTGCTACTTCT+TGG | 0.238294 | 7.2:-42909092 | None:intergenic |
| TCTGCTACTTCTTGGAATAA+AGG | 0.258191 | 7.2:-42909084 | None:intergenic |
| GTTCCTGTTCTTGTTCATAA+TGG | 0.264740 | 7.2:+42907352 | MS.gene46048:CDS |
| CCTTCAAAGGAGCAACAATT+TGG | 0.283830 | 7.2:+42909195 | MS.gene46048:CDS |
| GAGCTGAAGGACAAGTTCTT+TGG | 0.294063 | 7.2:+42909018 | MS.gene46048:CDS |
| AAAGAGCCTTGGATCGGTTT+TGG | 0.296896 | 7.2:+42907461 | MS.gene46048:CDS |
| TGATGAAGAAGTTCAGCTTT+TGG | 0.304952 | 7.2:+42907195 | MS.gene46048:CDS |
| CTGCTACTTCTTGGAATAAA+GGG | 0.326236 | 7.2:-42909083 | None:intergenic |
| TGCAATCAGTGTGTGATTGC+TGG | 0.330622 | 7.2:+42908910 | MS.gene46048:intron |
| CCAAATTGTTGCTCCTTTGA+AGG | 0.341332 | 7.2:-42909195 | None:intergenic |
| TTCCTGTTCTTGTTCATAAT+GGG | 0.343118 | 7.2:+42907353 | MS.gene46048:CDS |
| ATCACACGTGACTCAGAAAT+AGG | 0.365913 | 7.2:-42907379 | None:intergenic |
| ACAGGAACCATCCTATAAAC+TGG | 0.382808 | 7.2:-42907337 | None:intergenic |
| TTCTCGCGCTCTTTCTCATC+AGG | 0.391480 | 7.2:-42908952 | None:intergenic |
| GGGAAGTCCATTTGTGATAA+GGG | 0.397256 | 7.2:+42907225 | MS.gene46048:CDS |
| ATTTGAACCCTTATCACAAA+TGG | 0.404722 | 7.2:-42907232 | None:intergenic |
| GTCAAAGTTCATAGATGAAA+AGG | 0.412601 | 7.2:+42907483 | MS.gene46048:CDS |
| TGGGAAGTCCATTTGTGATA+AGG | 0.415245 | 7.2:+42907224 | MS.gene46048:CDS |
| TTGAGTATATTGATGAAGCT+TGG | 0.430723 | 7.2:+42907404 | MS.gene46048:CDS |
| TTCTTTGGAGGAGAAGAGAT+TGG | 0.438548 | 7.2:+42909033 | MS.gene46048:CDS |
| AGGAGAAGAGATTGGCTTTG+TGG | 0.446167 | 7.2:+42909041 | MS.gene46048:CDS |
| AGCTTGGGAAATTTGTCAGC+AGG | 0.453112 | 7.2:-42909120 | None:intergenic |
| TTCCCATTATGAACAAGAAC+AGG | 0.453502 | 7.2:-42907355 | None:intergenic |
| CTGAAGGACAAGTTCTTTGG+AGG | 0.491967 | 7.2:+42909021 | MS.gene46048:CDS |
| CAAATTGCTCTGAAATTGAA+AGG | 0.499164 | 7.2:+42907250 | MS.gene46048:CDS |
| GGCATAACTTCTTTGACGAC+TGG | 0.505487 | 7.2:-42909174 | None:intergenic |
| TGATCCTTACAAAAGAGCCT+TGG | 0.527046 | 7.2:+42907450 | MS.gene46048:CDS |
| AGGAATTCAACACAAATATG+TGG | 0.539674 | 7.2:+42907270 | MS.gene46048:CDS |
| CAAAGAAGTTATGCCTTCAA+AGG | 0.540486 | 7.2:+42909182 | MS.gene46048:CDS |
| TAACTTCTTTGACGACTGGA+TGG | 0.546537 | 7.2:-42909170 | None:intergenic |
| GGCTCGTGAAGAATTATTCG+AGG | 0.551878 | 7.2:+42908975 | MS.gene46048:CDS |
| ATACAATCCAGTTTATAGGA+TGG | 0.576358 | 7.2:+42907330 | MS.gene46048:CDS |
| GTTTCTTGAGAATGAGCTGA+AGG | 0.580852 | 7.2:+42909005 | MS.gene46048:CDS |
| CTTACAAAAGAGCCTTGGAT+CGG | 0.586658 | 7.2:+42907455 | MS.gene46048:CDS |
| GCTTGGGAAATTTGTCAGCA+GGG | 0.597981 | 7.2:-42909119 | None:intergenic |
| TGATGAGAAAGAGCGCGAGA+AGG | 0.601244 | 7.2:+42908954 | MS.gene46048:CDS |
| ATCAGTGTGTGATTGCTGGA+TGG | 0.625508 | 7.2:+42908914 | MS.gene46048:intron |
| CTTTGACCAAAACCGATCCA+AGG | 0.633516 | 7.2:-42907467 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTCTATTTATTTATGTTA+TGG | - | chr7.2:42907950-42907969 | None:intergenic | 15.0% |
| !! | ATTTCATTCATGAATTATAT+CGG | + | chr7.2:42907706-42907725 | MS.gene46048:intron | 15.0% |
| !! | CTATATATATTTCTTACTAA+TGG | + | chr7.2:42908560-42908579 | MS.gene46048:intron | 15.0% |
| !! | GTTCTATTTATTTATGTTAT+GGG | - | chr7.2:42907949-42907968 | None:intergenic | 15.0% |
| !!! | AATTTCACCAAATTTTTTAA+TGG | - | chr7.2:42907689-42907708 | None:intergenic | 15.0% |
| !! | GAACTAAAATAAATCTTGTT+TGG | - | chr7.2:42908331-42908350 | None:intergenic | 20.0% |
| !! | TATATTTCTTACTAATGGTA+AGG | + | chr7.2:42908565-42908584 | MS.gene46048:intron | 20.0% |
| !! | TTATTTATGTTATGGGTTTA+GGG | - | chr7.2:42907942-42907961 | None:intergenic | 20.0% |
| !! | TTTATTTATGTTATGGGTTT+AGG | - | chr7.2:42907943-42907962 | None:intergenic | 20.0% |
| !!! | CAATTTTCTTTTAACTATAC+TGG | + | chr7.2:42908045-42908064 | MS.gene46048:intron | 20.0% |
| !!! | GTTATGATGTTTAGATTTTA+GGG | + | chr7.2:42908147-42908166 | MS.gene46048:intron | 20.0% |
| !!! | TCTACTTTTAAATGAATGTT+TGG | + | chr7.2:42908349-42908368 | MS.gene46048:intron | 20.0% |
| !!! | TGTTATGATGTTTAGATTTT+AGG | + | chr7.2:42908146-42908165 | MS.gene46048:intron | 20.0% |
| ! | AAAGTTTACATTTAGTGATG+TGG | - | chr7.2:42908851-42908870 | None:intergenic | 25.0% |
| ! | AAATATGTGGAAGAAAAACT+GGG | + | chr7.2:42907283-42907302 | MS.gene46048:CDS | 25.0% |
| ! | ATCATAACAACAGTTTAAAG+TGG | - | chr7.2:42908135-42908154 | None:intergenic | 25.0% |
| ! | ATGTTTGGAAATTAGCAATT+TGG | + | chr7.2:42908364-42908383 | MS.gene46048:intron | 25.0% |
| ! | CTGTCAACCATTAAAAAATT+TGG | + | chr7.2:42907679-42907698 | MS.gene46048:intron | 25.0% |
| ! | GATAGTATACATCTCATAAA+AGG | - | chr7.2:42907539-42907558 | None:intergenic | 25.0% |
| ! | TATATTGTTCATTGCATTGT+TGG | + | chr7.2:42908690-42908709 | MS.gene46048:intron | 25.0% |
| ! | TCAAATACAATCCAGTTTAT+AGG | + | chr7.2:42907326-42907345 | MS.gene46048:CDS | 25.0% |
| ! | TCATAACTGAATTTGATCAA+TGG | - | chr7.2:42908111-42908130 | None:intergenic | 25.0% |
| !! | CTGTGTTTTGTATTTCATTT+TGG | + | chr7.2:42908403-42908422 | MS.gene46048:intron | 25.0% |
| !!! | AATTTTTTAATGGTTGACAG+TGG | - | chr7.2:42907679-42907698 | None:intergenic | 25.0% |
| !!! | GTATTTTGAGTTCTAGAAAT+GGG | - | chr7.2:42908484-42908503 | None:intergenic | 25.0% |
| !!! | TGAATTGTGACTTTTGTTAT+TGG | - | chr7.2:42908621-42908640 | None:intergenic | 25.0% |
| !!! | TGTATTTTGAGTTCTAGAAA+TGG | - | chr7.2:42908485-42908504 | None:intergenic | 25.0% |
| AAACACTATCTCTACTACTA+AGG | - | chr7.2:42908532-42908551 | None:intergenic | 30.0% | |
| AATTTCCCAAGCTACAAAAA+TGG | + | chr7.2:42909130-42909149 | MS.gene46048:CDS | 30.0% | |
| AGGAATTCAACACAAATATG+TGG | + | chr7.2:42907270-42907289 | MS.gene46048:CDS | 30.0% | |
| ATACAATCCAGTTTATAGGA+TGG | + | chr7.2:42907330-42907349 | MS.gene46048:CDS | 30.0% | |
| ATTTGAACCCTTATCACAAA+TGG | - | chr7.2:42907235-42907254 | None:intergenic | 30.0% | |
| CAAATATGTGGAAGAAAAAC+TGG | + | chr7.2:42907282-42907301 | MS.gene46048:CDS | 30.0% | |
| GTCAAAGTTCATAGATGAAA+AGG | + | chr7.2:42907483-42907502 | MS.gene46048:CDS | 30.0% | |
| TAACTGCTCTATAATCGTAA+AGG | + | chr7.2:42907971-42907990 | MS.gene46048:intron | 30.0% | |
| TAAGGATCATTAGGCAAAAT+AGG | - | chr7.2:42907439-42907458 | None:intergenic | 30.0% | |
| TTCCTGTTCTTGTTCATAAT+GGG | + | chr7.2:42907353-42907372 | MS.gene46048:CDS | 30.0% | |
| TTGAGTATATTGATGAAGCT+TGG | + | chr7.2:42907404-42907423 | MS.gene46048:CDS | 30.0% | |
| !! | CAAATTGCTCTGAAATTGAA+AGG | + | chr7.2:42907250-42907269 | MS.gene46048:CDS | 30.0% |
| !! | CAGTGGACTATATGTTAAAT+TGG | - | chr7.2:42907662-42907681 | None:intergenic | 30.0% |
| !! | TTGGTTTTCAAAAGATGCAT+TGG | + | chr7.2:42908445-42908464 | MS.gene46048:intron | 30.0% |
| CAAAGAAGTTATGCCTTCAA+AGG | + | chr7.2:42909182-42909201 | MS.gene46048:CDS | 35.0% | |
| CCAAATTGTGTAATTGTGTC+AGG | - | chr7.2:42908429-42908448 | None:intergenic | 35.0% | |
| CCTGACACAATTACACAATT+TGG | + | chr7.2:42908426-42908445 | MS.gene46048:intron | 35.0% | |
| GTTCCTGTTCTTGTTCATAA+TGG | + | chr7.2:42907352-42907371 | MS.gene46048:CDS | 35.0% | |
| TTCCCATTATGAACAAGAAC+AGG | - | chr7.2:42907358-42907377 | None:intergenic | 35.0% | |
| ! | ATCGTAAAGGTATGCAACAT+TGG | + | chr7.2:42907984-42908003 | MS.gene46048:intron | 35.0% |
| ! | CTGCTACTTCTTGGAATAAA+GGG | - | chr7.2:42909086-42909105 | None:intergenic | 35.0% |
| ! | GATGAAGAAGTTCAGCTTTT+GGG | + | chr7.2:42907196-42907215 | MS.gene46048:CDS | 35.0% |
| ! | GCTCTTTTGTAAGGATCATT+AGG | - | chr7.2:42907448-42907467 | None:intergenic | 35.0% |
| ! | TCTGCTACTTCTTGGAATAA+AGG | - | chr7.2:42909087-42909106 | None:intergenic | 35.0% |
| ! | TGATGAAGAAGTTCAGCTTT+TGG | + | chr7.2:42907195-42907214 | MS.gene46048:CDS | 35.0% |
| !! | AGACTCCATTTTTGTAGCTT+GGG | - | chr7.2:42909138-42909157 | None:intergenic | 35.0% |
| !! | GTGGTTGATAAATTCTAGCA+TGG | - | chr7.2:42908832-42908851 | None:intergenic | 35.0% |
| !! | TAGACTCCATTTTTGTAGCT+TGG | - | chr7.2:42909139-42909158 | None:intergenic | 35.0% |
| !! | TCAAGGGTATTGCTGTAATT+TGG | + | chr7.2:42907907-42907926 | MS.gene46048:intron | 35.0% |
| AATTGAGCCTAACACACGTT+CGG | - | chr7.2:42907848-42907867 | None:intergenic | 40.0% | |
| ACAGGAACCATCCTATAAAC+TGG | - | chr7.2:42907340-42907359 | None:intergenic | 40.0% | |
| ATCACACGTGACTCAGAAAT+AGG | - | chr7.2:42907382-42907401 | None:intergenic | 40.0% | |
| ATTGCTGTAATTTGGACCCT+TGG | + | chr7.2:42907915-42907934 | MS.gene46048:intron | 40.0% | |
| CCAAATTGTTGCTCCTTTGA+AGG | - | chr7.2:42909198-42909217 | None:intergenic | 40.0% | |
| CCTTCAAAGGAGCAACAATT+TGG | + | chr7.2:42909195-42909214 | MS.gene46048:CDS | 40.0% | |
| CTCGTATATAGACACAGAAG+AGG | + | chr7.2:42907751-42907770 | MS.gene46048:intron | 40.0% | |
| CTTACAAAAGAGCCTTGGAT+CGG | + | chr7.2:42907455-42907474 | MS.gene46048:CDS | 40.0% | |
| GGGAAGTCCATTTGTGATAA+GGG | + | chr7.2:42907225-42907244 | MS.gene46048:CDS | 40.0% | |
| GTGTTAGGCTCAATTCATGT+TGG | + | chr7.2:42907853-42907872 | MS.gene46048:intron | 40.0% | |
| GTTTCTTGAGAATGAGCTGA+AGG | + | chr7.2:42909005-42909024 | MS.gene46048:CDS | 40.0% | |
| TAACTTCTTTGACGACTGGA+TGG | - | chr7.2:42909173-42909192 | None:intergenic | 40.0% | |
| TAGGCTCAATTCATGTTGGA+GGG | + | chr7.2:42907857-42907876 | MS.gene46048:intron | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.2:42907450-42907469 | MS.gene46048:CDS | 40.0% | |
| TGGGAAGTCCATTTGTGATA+AGG | + | chr7.2:42907224-42907243 | MS.gene46048:CDS | 40.0% | |
| TTAGGCTCAATTCATGTTGG+AGG | + | chr7.2:42907856-42907875 | MS.gene46048:intron | 40.0% | |
| ! | ACTGTTTCTCTGCTACTTCT+TGG | - | chr7.2:42909095-42909114 | None:intergenic | 40.0% |
| ! | TTCTTTGGAGGAGAAGAGAT+TGG | + | chr7.2:42909033-42909052 | MS.gene46048:CDS | 40.0% |
| AGCTTGGGAAATTTGTCAGC+AGG | - | chr7.2:42909123-42909142 | None:intergenic | 45.0% | |
| ATCAGTGTGTGATTGCTGGA+TGG | + | chr7.2:42908914-42908933 | MS.gene46048:intron | 45.0% | |
| CTGAAGGACAAGTTCTTTGG+AGG | + | chr7.2:42909021-42909040 | MS.gene46048:CDS | 45.0% | |
| CTTTGACCAAAACCGATCCA+AGG | - | chr7.2:42907470-42907489 | None:intergenic | 45.0% | |
| GAGCTGAAGGACAAGTTCTT+TGG | + | chr7.2:42909018-42909037 | MS.gene46048:CDS | 45.0% | |
| GCTTGGGAAATTTGTCAGCA+GGG | - | chr7.2:42909122-42909141 | None:intergenic | 45.0% | |
| GGCATAACTTCTTTGACGAC+TGG | - | chr7.2:42909177-42909196 | None:intergenic | 45.0% | |
| GGCTCGTGAAGAATTATTCG+AGG | + | chr7.2:42908975-42908994 | MS.gene46048:CDS | 45.0% | |
| TGCAATCAGTGTGTGATTGC+TGG | + | chr7.2:42908910-42908929 | MS.gene46048:intron | 45.0% | |
| ! | CGATCCAAGGCTCTTTTGTA+AGG | - | chr7.2:42907457-42907476 | None:intergenic | 45.0% |
| ! | GTTATGGGTTTAGGGTCCAA+GGG | - | chr7.2:42907934-42907953 | None:intergenic | 45.0% |
| ! | TGTTATGGGTTTAGGGTCCA+AGG | - | chr7.2:42907935-42907954 | None:intergenic | 45.0% |
| !! | AAAGAGCCTTGGATCGGTTT+TGG | + | chr7.2:42907461-42907480 | MS.gene46048:CDS | 45.0% |
| !! | AGGAGAAGAGATTGGCTTTG+TGG | + | chr7.2:42909041-42909060 | MS.gene46048:CDS | 45.0% |
| !!! | AGTTCAGCTTTTGGGTTCAG+TGG | + | chr7.2:42907204-42907223 | MS.gene46048:CDS | 45.0% |
| !!! | GTTCAGCTTTTGGGTTCAGT+GGG | + | chr7.2:42907205-42907224 | MS.gene46048:CDS | 45.0% |
| CATGTTGGAGGGAGACTAGT+GGG | + | chr7.2:42907868-42907887 | MS.gene46048:intron | 50.0% | |
| GCACAATCACAGCAGTCACA+TGG | - | chr7.2:42907561-42907580 | None:intergenic | 50.0% | |
| TCATGTTGGAGGGAGACTAG+TGG | + | chr7.2:42907867-42907886 | MS.gene46048:intron | 50.0% | |
| TTCTCGCGCTCTTTCTCATC+AGG | - | chr7.2:42908955-42908974 | None:intergenic | 50.0% | |
| ! | ATAGACACAGAAGAGGCGCA+AGG | + | chr7.2:42907758-42907777 | MS.gene46048:intron | 50.0% |
| ! | TAGACACAGAAGAGGCGCAA+GGG | + | chr7.2:42907759-42907778 | MS.gene46048:intron | 50.0% |
| ! | TGATGAGAAAGAGCGCGAGA+AGG | + | chr7.2:42908954-42908973 | MS.gene46048:CDS | 50.0% |
| GTTTGGGCCGAACGTGTGTT+AGG | + | chr7.2:42907838-42907857 | MS.gene46048:intron | 55.0% | |
| ! | AGACACAGAAGAGGCGCAAG+GGG | + | chr7.2:42907760-42907779 | MS.gene46048:intron | 55.0% |
| !! | TTCAGGTGGCGTCGGTTCAA+GGG | + | chr7.2:42907891-42907910 | MS.gene46048:intron | 55.0% |
| ACACGTTCGGCCCAAACGCA+AGG | - | chr7.2:42907835-42907854 | None:intergenic | 60.0% | |
| CAAACGCAAGGACAGGGGGA+GGG | - | chr7.2:42907823-42907842 | None:intergenic | 60.0% | |
| CTCCCCCTGTCCTTGCGTTT+GGG | + | chr7.2:42907822-42907841 | MS.gene46048:intron | 60.0% | |
| TCGGCCCAAACGCAAGGACA+GGG | - | chr7.2:42907829-42907848 | None:intergenic | 60.0% | |
| TTCGGCCCAAACGCAAGGAC+AGG | - | chr7.2:42907830-42907849 | None:intergenic | 60.0% | |
| !! | CTAGTGGGTTCAGGTGGCGT+CGG | + | chr7.2:42907883-42907902 | MS.gene46048:intron | 60.0% |
| !! | GGAGGGAGACTAGTGGGTTC+AGG | + | chr7.2:42907874-42907893 | MS.gene46048:intron | 60.0% |
| !! | GGGAGACTAGTGGGTTCAGG+TGG | + | chr7.2:42907877-42907896 | MS.gene46048:intron | 60.0% |
| !! | GTTCAGGTGGCGTCGGTTCA+AGG | + | chr7.2:42907890-42907909 | MS.gene46048:intron | 60.0% |
| ACAGGGGGAGGGAGCTTTGC+AGG | - | chr7.2:42907812-42907831 | None:intergenic | 65.0% | |
| CAGGGGGAGGGAGCTTTGCA+GGG | - | chr7.2:42907811-42907830 | None:intergenic | 65.0% | |
| CCAAACGCAAGGACAGGGGG+AGG | - | chr7.2:42907824-42907843 | None:intergenic | 65.0% | |
| CCTCCCCCTGTCCTTGCGTT+TGG | + | chr7.2:42907821-42907840 | MS.gene46048:intron | 65.0% | |
| CGGCCCAAACGCAAGGACAG+GGG | - | chr7.2:42907828-42907847 | None:intergenic | 65.0% | |
| GGCCCAAACGCAAGGACAGG+GGG | - | chr7.2:42907827-42907846 | None:intergenic | 65.0% | |
| ! | CACAGAAGAGGCGCAAGGGG+TGG | + | chr7.2:42907763-42907782 | MS.gene46048:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 42907184 | 42909263 | 42907184 | ID=MS.gene46048 |
| chr7.2 | mRNA | 42907184 | 42909263 | 42907184 | ID=MS.gene46048.t1;Parent=MS.gene46048 |
| chr7.2 | exon | 42907184 | 42907504 | 42907184 | ID=MS.gene46048.t1.exon1;Parent=MS.gene46048.t1 |
| chr7.2 | CDS | 42907184 | 42907504 | 42907184 | ID=cds.MS.gene46048.t1;Parent=MS.gene46048.t1 |
| chr7.2 | exon | 42908919 | 42909263 | 42908919 | ID=MS.gene46048.t1.exon2;Parent=MS.gene46048.t1 |
| chr7.2 | CDS | 42908919 | 42909263 | 42908919 | ID=cds.MS.gene46048.t1;Parent=MS.gene46048.t1 |
| Gene Sequence |
| Protein sequence |
