Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46473.t1 | XP_013467739.1 | 99.5 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 2.00E-212 | 748 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46473.t1 | A0A072VJK1 | 99.5 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 1.4e-212 | 748.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene46473 | 0.805305 | 1.42E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene46473 | 0.82346 | 1.37E-53 | -1.69E-46 |
| MS.gene050586 | MS.gene46473 | 0.827067 | 1.92E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene46473 | 0.83994 | 1.17E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene46473 | 0.814325 | 1.63E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene46473 | 0.812452 | 4.21E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene46473 | 0.815571 | 8.64E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene46473 | 0.824945 | 6.13E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene46473 | 0.813992 | 1.93E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene46473 | 0.80215 | 6.43E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene46473 | 0.831955 | 1.24E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene46473 | 0.837445 | 5.18E-57 | -1.69E-46 |
| MS.gene052732 | MS.gene46473 | 0.842936 | 1.91E-58 | -1.69E-46 |
| MS.gene053144 | MS.gene46473 | 0.813791 | 2.14E-51 | -1.69E-46 |
| MS.gene053174 | MS.gene46473 | 0.818899 | 1.54E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene46473 | 0.813097 | 3.04E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene46473 | 0.818736 | 1.68E-52 | -1.69E-46 |
| MS.gene054550 | MS.gene46473 | 0.818567 | 1.83E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene46473 | 0.82963 | 4.62E-55 | -1.69E-46 |
| MS.gene055465 | MS.gene46473 | 0.818873 | 1.56E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene46473 | 0.823146 | 1.62E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene46473 | 0.840345 | 9.19E-58 | -1.69E-46 |
| MS.gene055608 | MS.gene46473 | 0.828824 | 7.25E-55 | -1.69E-46 |
| MS.gene055891 | MS.gene46473 | 0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene46473 | 0.800926 | 1.15E-48 | -1.69E-46 |
| MS.gene058852 | MS.gene46473 | 0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene46473 | 0.808498 | 3.01E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene46473 | 0.819547 | 1.10E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46473.t1 | MTR_1g054670 | 99.451 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 0.0 | 755 |
| MS.gene46473.t1 | MTR_6g445110 | 47.139 | 367 | 168 | 7 | 4 | 347 | 17 | 380 | 8.14e-113 | 334 |
| MS.gene46473.t1 | MTR_1g106875 | 48.045 | 358 | 162 | 7 | 4 | 347 | 74 | 421 | 4.97e-112 | 335 |
| MS.gene46473.t1 | MTR_1g018620 | 52.885 | 312 | 133 | 4 | 48 | 347 | 111 | 420 | 4.33e-111 | 332 |
| MS.gene46473.t1 | MTR_3g102670 | 48.000 | 300 | 144 | 4 | 60 | 348 | 93 | 391 | 1.85e-99 | 301 |
| MS.gene46473.t1 | MTR_3g069720 | 43.072 | 332 | 154 | 5 | 48 | 350 | 63 | 388 | 3.40e-90 | 278 |
| MS.gene46473.t1 | MTR_5g081550 | 41.615 | 322 | 164 | 5 | 50 | 350 | 58 | 376 | 1.32e-84 | 263 |
| MS.gene46473.t1 | MTR_1g022075 | 40.810 | 321 | 173 | 5 | 40 | 350 | 55 | 368 | 1.09e-74 | 236 |
| MS.gene46473.t1 | MTR_5g019880 | 39.871 | 311 | 177 | 4 | 45 | 347 | 67 | 375 | 1.60e-70 | 225 |
| MS.gene46473.t1 | MTR_3g111790 | 36.950 | 341 | 193 | 7 | 28 | 350 | 41 | 377 | 2.16e-69 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46473.t1 | AT5G06610 | 61.281 | 359 | 132 | 5 | 1 | 354 | 1 | 357 | 2.41e-157 | 446 |
| MS.gene46473.t1 | AT3G19540 | 51.125 | 311 | 139 | 4 | 48 | 347 | 126 | 434 | 3.29e-112 | 336 |
| MS.gene46473.t1 | AT1G27690 | 47.671 | 365 | 172 | 5 | 4 | 350 | 49 | 412 | 1.08e-111 | 333 |
| MS.gene46473.t1 | AT1G49840 | 46.281 | 363 | 172 | 8 | 4 | 348 | 86 | 443 | 1.32e-107 | 324 |
| MS.gene46473.t1 | AT1G79420 | 42.674 | 389 | 175 | 8 | 4 | 350 | 20 | 402 | 2.15e-99 | 301 |
| MS.gene46473.t1 | AT5G05840 | 43.333 | 330 | 160 | 5 | 44 | 349 | 62 | 388 | 6.53e-92 | 282 |
| MS.gene46473.t1 | AT5G66740 | 40.181 | 331 | 181 | 6 | 32 | 347 | 38 | 366 | 5.87e-74 | 234 |
| MS.gene46473.t1 | AT3G55720 | 39.053 | 338 | 169 | 7 | 43 | 347 | 57 | 390 | 1.15e-70 | 228 |
| MS.gene46473.t1 | AT1G75160 | 40.193 | 311 | 168 | 8 | 55 | 350 | 87 | 394 | 2.46e-66 | 215 |
Find 81 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCATTGAGGGGTGATTT+AGG | 0.222575 | 1.4:+45128471 | None:intergenic |
| AAAATGCTTCTTAGTGTTCT+TGG | 0.223207 | 1.4:-45128522 | MS.gene46473:CDS |
| GTTAATGGAACTTCAGAAAA+AGG | 0.250902 | 1.4:-45127579 | MS.gene46473:CDS |
| TTGATAGGTTCTTCTGATAA+TGG | 0.264140 | 1.4:+45128663 | None:intergenic |
| GCACTAAAAGTCCATTTCTT+TGG | 0.271022 | 1.4:+45126530 | None:intergenic |
| TCCTCTTCGCCGTGCACTTC+AGG | 0.275448 | 1.4:-45127409 | MS.gene46473:intron |
| ATGATAAAGCATGCTATCTT+TGG | 0.286269 | 1.4:-45126562 | MS.gene46473:CDS |
| ATCTCTATCTGCCAATTATC+AGG | 0.310067 | 1.4:+45127531 | None:intergenic |
| GTCGGTGGTGGTGGTGTTAA+TGG | 0.312645 | 1.4:-45127594 | MS.gene46473:CDS |
| TAGGGACAAATCCTACATAT+TGG | 0.324957 | 1.4:-45126471 | MS.gene46473:CDS |
| GGCAAATGGTTCCTGATAAT+TGG | 0.359506 | 1.4:-45127542 | MS.gene46473:CDS |
| TTGACAAGGATTCAAGCAAT+AGG | 0.367414 | 1.4:-45126490 | MS.gene46473:CDS |
| AGGGGTGATTTAGGATGAAT+AGG | 0.373094 | 1.4:+45128480 | None:intergenic |
| CTCGGTGTGCACGCTGCTAA+AGG | 0.374472 | 1.4:-45127441 | MS.gene46473:CDS |
| GTCCACAACAACATCTTGAT+TGG | 0.384230 | 1.4:-45126222 | MS.gene46473:CDS |
| CAACAATTCACAGCTGCAAC+AGG | 0.388041 | 1.4:-45127699 | MS.gene46473:CDS |
| TACTACCAGCAAGAACCTTT+TGG | 0.394205 | 1.4:+45127496 | None:intergenic |
| AGGGACAAATCCTACATATT+GGG | 0.397990 | 1.4:-45126470 | MS.gene46473:CDS |
| TGACAAGGATTCAAGCAATA+GGG | 0.405287 | 1.4:-45126489 | MS.gene46473:CDS |
| TCAAAATATAACTCTAAGAA+AGG | 0.430604 | 1.4:-45128618 | MS.gene46473:CDS |
| ATTGTTGTTTCCCAATATGT+AGG | 0.441158 | 1.4:+45126460 | None:intergenic |
| GGTGGCCAAAAGGTTCTTGC+TGG | 0.442056 | 1.4:-45127501 | MS.gene46473:CDS |
| AAGGTTTGGTGATAATCTTA+AGG | 0.444872 | 1.4:-45126359 | MS.gene46473:CDS |
| CTTGGATCGGTCGGTGGTGG+TGG | 0.446484 | 1.4:-45127603 | MS.gene46473:CDS |
| GTGAAGAATGTGTTTGCAAC+CGG | 0.450494 | 1.4:-45127654 | MS.gene46473:CDS |
| AGGATGGACCTGCTATTACT+AGG | 0.461843 | 1.4:-45126339 | MS.gene46473:CDS |
| AGTTATGGATGAATTGGAGT+TGG | 0.469771 | 1.4:-45128590 | MS.gene46473:CDS |
| AAAACTCTCAGCCGATCAAA+AGG | 0.470917 | 1.4:-45126617 | MS.gene46473:CDS |
| TGATTGTTTCTTACCACCTC+AGG | 0.473945 | 1.4:-45126260 | MS.gene46473:CDS |
| GATTGTTGTTGGTGGCCAAA+AGG | 0.485888 | 1.4:-45127511 | MS.gene46473:CDS |
| TGGCGTCACACACCTTGGCT+CGG | 0.492783 | 1.4:-45127459 | MS.gene46473:CDS |
| GAGCTTGGATCGGTCGGTGG+TGG | 0.494261 | 1.4:-45127606 | MS.gene46473:CDS |
| ATGGTTGTCGTGGACGAGCT+TGG | 0.495724 | 1.4:-45127621 | MS.gene46473:CDS |
| GATTTAGGATGAATAGGAAC+AGG | 0.498652 | 1.4:+45128486 | None:intergenic |
| ATACAGCTGATACTGCTAAA+GGG | 0.506311 | 1.4:+45126698 | None:intergenic |
| GAAGACTATAGAGATGTTGA+TGG | 0.506980 | 1.4:-45126424 | MS.gene46473:CDS |
| TGCAACAGGGTGTAGGAAGT+TGG | 0.515412 | 1.4:-45127685 | MS.gene46473:CDS |
| GATGTTGCATTTAATGTTCA+AGG | 0.515683 | 1.4:-45126292 | MS.gene46473:CDS |
| GTAGTAACGGCACTATTGCT+TGG | 0.521284 | 1.4:-45127479 | MS.gene46473:CDS |
| AAAAGAACTTACCTCATTGA+GGG | 0.521839 | 1.4:+45128461 | None:intergenic |
| TTTGGTGATAATCTTAAGGA+TGG | 0.522450 | 1.4:-45126355 | MS.gene46473:CDS |
| AATACAGCTGATACTGCTAA+AGG | 0.523894 | 1.4:+45126697 | None:intergenic |
| TGGCAGATAGAGATTGTTGT+TGG | 0.528000 | 1.4:-45127522 | MS.gene46473:CDS |
| TCTGTTACAGGTTTCGTCAT+CGG | 0.528049 | 1.4:-45127736 | MS.gene46473:intron |
| GGTGTTATGATTGCACATGC+TGG | 0.531989 | 1.4:-45126403 | MS.gene46473:CDS |
| GATAGCATGCTTTATCATCT+CGG | 0.533661 | 1.4:+45126567 | None:intergenic |
| CAGATAGAGATTGTTGTTGG+TGG | 0.537302 | 1.4:-45127519 | MS.gene46473:CDS |
| TTTCAAGCTTAGATATGGGT+AGG | 0.539926 | 1.4:-45128692 | None:intergenic |
| TGGACCTGCTATTACTAGGT+TGG | 0.544281 | 1.4:-45126335 | MS.gene46473:CDS |
| AAGGTTCTTGCTGGTAGTAA+CGG | 0.544977 | 1.4:-45127492 | MS.gene46473:CDS |
| ACTGTGATGATAACAAGGTT+TGG | 0.564007 | 1.4:-45126373 | MS.gene46473:CDS |
| TTGCTTGGCGTCACACACCT+TGG | 0.565443 | 1.4:-45127464 | MS.gene46473:CDS |
| TCTTCCAACCTAGTAATAGC+AGG | 0.565502 | 1.4:+45126331 | None:intergenic |
| TTACTAGGTTGGAAGAGTCA+TGG | 0.572091 | 1.4:-45126324 | MS.gene46473:CDS |
| CAATCTTTGTTAAGTTCCTG+AGG | 0.573721 | 1.4:+45126244 | None:intergenic |
| TGTCGTGGACGAGCTTGGAT+CGG | 0.576957 | 1.4:-45127616 | MS.gene46473:CDS |
| GCAGCGTGCACACCGAGCCA+AGG | 0.577284 | 1.4:+45127447 | None:intergenic |
| ATTCAGTGCAGCACAACACA+TGG | 0.578130 | 1.4:-45126677 | MS.gene46473:CDS |
| GTGGACGAGCTTGGATCGGT+CGG | 0.581244 | 1.4:-45127612 | MS.gene46473:CDS |
| ACCTGAAGTGCACGGCGAAG+AGG | 0.581794 | 1.4:+45127408 | None:intergenic |
| AACAGGGTGTAGGAAGTTGG+AGG | 0.584583 | 1.4:-45127682 | MS.gene46473:CDS |
| CAACAACTGTGATGATAACA+AGG | 0.586246 | 1.4:-45126378 | MS.gene46473:CDS |
| ATGTTGCATTTAATGTTCAA+GGG | 0.590841 | 1.4:-45126291 | MS.gene46473:CDS |
| TTCAGTGCAGCACAACACAT+GGG | 0.596650 | 1.4:-45126676 | MS.gene46473:CDS |
| TCACAGCTGCAACAGGGTGT+AGG | 0.606606 | 1.4:-45127692 | MS.gene46473:CDS |
| AAAAGTGACAATGGTTGTCG+TGG | 0.609256 | 1.4:-45127631 | MS.gene46473:CDS |
| GACGAGCTTGGATCGGTCGG+TGG | 0.615008 | 1.4:-45127609 | MS.gene46473:CDS |
| TAGAGGACTCTTATTTGACA+AGG | 0.615017 | 1.4:-45126504 | MS.gene46473:CDS |
| TCTTTGTTAAGTTCCTGAGG+TGG | 0.615936 | 1.4:+45126247 | None:intergenic |
| TCCTAAATCACCCCTCAATG+AGG | 0.627312 | 1.4:-45128472 | MS.gene46473:intron |
| CTCCAATCAAGATGTTGTTG+TGG | 0.628883 | 1.4:+45126220 | None:intergenic |
| TCAGTGCAGCACAACACATG+GGG | 0.639092 | 1.4:-45126675 | MS.gene46473:CDS |
| ACAGGGTGTAGGAAGTTGGA+GGG | 0.647737 | 1.4:-45127681 | MS.gene46473:CDS |
| AACAATTCACAGCTGCAACA+GGG | 0.653620 | 1.4:-45127698 | MS.gene46473:CDS |
| GATTGAACGAAGCGACAACA+CGG | 0.665874 | 1.4:-45126590 | MS.gene46473:CDS |
| AAAGAACTTACCTCATTGAG+GGG | 0.670876 | 1.4:+45128462 | None:intergenic |
| ATGAACTTACCTGAAGTGCA+CGG | 0.677574 | 1.4:+45127400 | None:intergenic |
| GGTGTGCACGCTGCTAAAGG+CGG | 0.678174 | 1.4:-45127438 | MS.gene46473:CDS |
| TGCAACCGGAAAAGTGACAA+TGG | 0.685929 | 1.4:-45127640 | MS.gene46473:CDS |
| CAGGGTGTAGGAAGTTGGAG+GGG | 0.733318 | 1.4:-45127680 | MS.gene46473:CDS |
| CAGTGCAGCACAACACATGG+GGG | 0.747483 | 1.4:-45126674 | MS.gene46473:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACATTAATATTAAAAG+GGG | + | chr1.4:45127054-45127073 | None:intergenic | 10.0% |
| !! | ATTATAAACAACTTATTTGA+AGG | + | chr1.4:45127786-45127805 | None:intergenic | 15.0% |
| !! | ATTTAGCAATATACTAAAAA+TGG | + | chr1.4:45126656-45126675 | None:intergenic | 15.0% |
| !! | TTAGATATTTATCAAATCAT+AGG | + | chr1.4:45128071-45128090 | None:intergenic | 15.0% |
| !!! | ACAATTAATGTTTGTTTTTA+AGG | + | chr1.4:45128138-45128157 | None:intergenic | 15.0% |
| !!! | ATATTGCTAAATATTTTTGT+CGG | - | chr1.4:45126664-45126683 | MS.gene46473:CDS | 15.0% |
| !! | AAAATAAAGATCACTGAAAA+AGG | + | chr1.4:45127116-45127135 | None:intergenic | 20.0% |
| !! | ATAGTTGAAGGAAATTTATT+AGG | + | chr1.4:45127983-45128002 | None:intergenic | 20.0% |
| !! | GAAAAAATGCTTCTAATTAT+TGG | - | chr1.4:45126785-45126804 | MS.gene46473:intron | 20.0% |
| !! | TAAAACATGAGTTCAAATTT+GGG | + | chr1.4:45126739-45126758 | None:intergenic | 20.0% |
| !! | TAGTTGAAGGAAATTTATTA+GGG | + | chr1.4:45127982-45128001 | None:intergenic | 20.0% |
| !! | TTAAAACATGAGTTCAAATT+TGG | + | chr1.4:45126740-45126759 | None:intergenic | 20.0% |
| !!! | AAGCATTTTTTCTTTACTTT+TGG | + | chr1.4:45126777-45126796 | None:intergenic | 20.0% |
| !!! | ATTTTGAATGTGATTGATTT+TGG | - | chr1.4:45127514-45127533 | MS.gene46473:CDS | 20.0% |
| !!! | TCAAAATATAACTCTAAGAA+AGG | - | chr1.4:45126261-45126280 | MS.gene46473:CDS | 20.0% |
| !!! | TTTTTTCTTTACTTTTGGTT+TGG | + | chr1.4:45126772-45126791 | None:intergenic | 20.0% |
| ! | AATATTCCAAACATCATCAT+AGG | + | chr1.4:45127826-45127845 | None:intergenic | 25.0% |
| ! | AGAAAAAGACAAGAAAGTTT+AGG | + | chr1.4:45128022-45128041 | None:intergenic | 25.0% |
| ! | ATGTTGCATTTAATGTTCAA+GGG | - | chr1.4:45128588-45128607 | MS.gene46473:CDS | 25.0% |
| ! | GATCAAACTTTACATATACA+AGG | + | chr1.4:45127094-45127113 | None:intergenic | 25.0% |
| ! | TATAGACACAAAATCAATTC+TGG | - | chr1.4:45127663-45127682 | MS.gene46473:CDS | 25.0% |
| ! | TCACATTCAAAATCAAGTTT+AGG | + | chr1.4:45127507-45127526 | None:intergenic | 25.0% |
| ! | TTACATATACAAGGTAACAT+TGG | + | chr1.4:45127085-45127104 | None:intergenic | 25.0% |
| !! | ATTTTGTTACAATCTGTTAC+AGG | - | chr1.4:45127131-45127150 | MS.gene46473:intron | 25.0% |
| !! | CTTTCATTTTCTTCATTGAT+AGG | + | chr1.4:45126234-45126253 | None:intergenic | 25.0% |
| !! | TGTTCTTTGTTGATTGAAAA+TGG | - | chr1.4:45126934-45126953 | MS.gene46473:intron | 25.0% |
| !!! | ACTTTTAGCTAACTTTTTCA+AGG | + | chr1.4:45126970-45126989 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGTGTCTAT+AGG | + | chr1.4:45127664-45127683 | None:intergenic | 25.0% |
| !!! | AGCTAAAAGTGTTCAAATTT+AGG | - | chr1.4:45126980-45126999 | MS.gene46473:intron | 25.0% |
| AAAAAGAACTTACCTCATTG+AGG | + | chr1.4:45126422-45126441 | None:intergenic | 30.0% | |
| AAAAGAACTTACCTCATTGA+GGG | + | chr1.4:45126421-45126440 | None:intergenic | 30.0% | |
| AAAATGCTTCTTAGTGTTCT+TGG | - | chr1.4:45126357-45126376 | MS.gene46473:CDS | 30.0% | |
| AAGCAAATGATCCAATTCAT+TGG | + | chr1.4:45127959-45127978 | None:intergenic | 30.0% | |
| AAGGTTTAGTAAAGTGTGTT+TGG | + | chr1.4:45127700-45127719 | None:intergenic | 30.0% | |
| ATGATAAAGCATGCTATCTT+TGG | - | chr1.4:45128317-45128336 | MS.gene46473:intron | 30.0% | |
| GATGTTGCATTTAATGTTCA+AGG | - | chr1.4:45128587-45128606 | MS.gene46473:CDS | 30.0% | |
| GTTAATGGAACTTCAGAAAA+AGG | - | chr1.4:45127300-45127319 | MS.gene46473:intron | 30.0% | |
| TGGTTAGATTGAATAGTTGA+AGG | + | chr1.4:45127995-45128014 | None:intergenic | 30.0% | |
| TTGATAGGTTCTTCTGATAA+TGG | + | chr1.4:45126219-45126238 | None:intergenic | 30.0% | |
| ! | AATTGTAGCTTTGCTATGTA+GGG | - | chr1.4:45128152-45128171 | MS.gene46473:intron | 30.0% |
| ! | CTAAGAAAGGTTTTCAGTTA+TGG | - | chr1.4:45126274-45126293 | MS.gene46473:CDS | 30.0% |
| ! | GTTTTCAGTTATGGATGAAT+TGG | - | chr1.4:45126283-45126302 | MS.gene46473:CDS | 30.0% |
| ! | TAATTGTAGCTTTGCTATGT+AGG | - | chr1.4:45128151-45128170 | MS.gene46473:intron | 30.0% |
| ! | TTCAATCAAGTCCTTTTGAT+CGG | + | chr1.4:45128276-45128295 | None:intergenic | 30.0% |
| ! | TTGTCATTTAACTACTGCTA+TGG | - | chr1.4:45127881-45127900 | MS.gene46473:intron | 30.0% |
| ! | TTTGGTGATAATCTTAAGGA+TGG | - | chr1.4:45128524-45128543 | MS.gene46473:CDS | 30.0% |
| !! | AAAAAGGTTGTTTTGTGATG+TGG | - | chr1.4:45127316-45127335 | MS.gene46473:intron | 30.0% |
| !! | AAGGTTTGGTGATAATCTTA+AGG | - | chr1.4:45128520-45128539 | MS.gene46473:CDS | 30.0% |
| !! | ATTGTTGTTTCCCAATATGT+AGG | + | chr1.4:45128422-45128441 | None:intergenic | 30.0% |
| !!! | GGTTATTTTAGCCAAAGAAA+TGG | - | chr1.4:45128338-45128357 | MS.gene46473:intron | 30.0% |
| !!! | TTTACTTTTGGTTTGGTTGA+AGG | + | chr1.4:45126765-45126784 | None:intergenic | 30.0% |
| AAAGAACTTACCTCATTGAG+GGG | + | chr1.4:45126420-45126439 | None:intergenic | 35.0% | |
| AACATGAGTTCAAATTTGGG+TGG | + | chr1.4:45126736-45126755 | None:intergenic | 35.0% | |
| AATACAGCTGATACTGCTAA+AGG | + | chr1.4:45128185-45128204 | None:intergenic | 35.0% | |
| ACTGTGATGATAACAAGGTT+TGG | - | chr1.4:45128506-45128525 | MS.gene46473:CDS | 35.0% | |
| AGGGACAAATCCTACATATT+GGG | - | chr1.4:45128409-45128428 | MS.gene46473:intron | 35.0% | |
| AGTTATGGATGAATTGGAGT+TGG | - | chr1.4:45126289-45126308 | MS.gene46473:CDS | 35.0% | |
| ATACAGCTGATACTGCTAAA+GGG | + | chr1.4:45128184-45128203 | None:intergenic | 35.0% | |
| ATCTCTATCTGCCAATTATC+AGG | + | chr1.4:45127351-45127370 | None:intergenic | 35.0% | |
| CAAATACTAGACGGTTTGAT+TGG | - | chr1.4:45126869-45126888 | MS.gene46473:intron | 35.0% | |
| CAACAACTGTGATGATAACA+AGG | - | chr1.4:45128501-45128520 | MS.gene46473:CDS | 35.0% | |
| CAATCTTTGTTAAGTTCCTG+AGG | + | chr1.4:45128638-45128657 | None:intergenic | 35.0% | |
| GAAGACTATAGAGATGTTGA+TGG | - | chr1.4:45128455-45128474 | MS.gene46473:intron | 35.0% | |
| GACAAGAAAGTTTAGGAATG+TGG | + | chr1.4:45128015-45128034 | None:intergenic | 35.0% | |
| GATAGCATGCTTTATCATCT+CGG | + | chr1.4:45128315-45128334 | None:intergenic | 35.0% | |
| GCACTAAAAGTCCATTTCTT+TGG | + | chr1.4:45128352-45128371 | None:intergenic | 35.0% | |
| GGATGGAATCAAATACTAGA+CGG | - | chr1.4:45126860-45126879 | MS.gene46473:intron | 35.0% | |
| GTGTCTATAGGAATAGTTGA+AGG | + | chr1.4:45127719-45127738 | None:intergenic | 35.0% | |
| TAGGGACAAATCCTACATAT+TGG | - | chr1.4:45128408-45128427 | MS.gene46473:intron | 35.0% | |
| TGAATAGGAACAGGAAAAAG+AGG | + | chr1.4:45126387-45126406 | None:intergenic | 35.0% | |
| TGACAAGGATTCAAGCAATA+GGG | - | chr1.4:45128390-45128409 | MS.gene46473:intron | 35.0% | |
| TTGACAAGGATTCAAGCAAT+AGG | - | chr1.4:45128389-45128408 | MS.gene46473:intron | 35.0% | |
| ! | GATTTAGGATGAATAGGAAC+AGG | + | chr1.4:45126396-45126415 | None:intergenic | 35.0% |
| ! | GTTGAACCTATGATGATGTT+TGG | - | chr1.4:45127817-45127836 | MS.gene46473:intron | 35.0% |
| ! | TAGAGGACTCTTATTTGACA+AGG | - | chr1.4:45128375-45128394 | MS.gene46473:intron | 35.0% |
| !! | TTGTTTTGTGATGTGGCAAA+TGG | - | chr1.4:45127323-45127342 | MS.gene46473:intron | 35.0% |
| !!! | GAACACTAAGAAGCATTTTG+AGG | + | chr1.4:45126356-45126375 | None:intergenic | 35.0% |
| AAAACTCTCAGCCGATCAAA+AGG | - | chr1.4:45128262-45128281 | MS.gene46473:intron | 40.0% | |
| AAAAGTGACAATGGTTGTCG+TGG | - | chr1.4:45127248-45127267 | MS.gene46473:intron | 40.0% | |
| AAACTTCAGCACTTCAACAC+AGG | - | chr1.4:45127916-45127935 | MS.gene46473:intron | 40.0% | |
| AACAATTCACAGCTGCAACA+GGG | - | chr1.4:45127181-45127200 | MS.gene46473:intron | 40.0% | |
| AAGGTTCTTGCTGGTAGTAA+CGG | - | chr1.4:45127387-45127406 | MS.gene46473:intron | 40.0% | |
| ATGAACTTACCTGAAGTGCA+CGG | + | chr1.4:45127482-45127501 | None:intergenic | 40.0% | |
| ATGGGGGAGAAACAAATCAA+CGG | - | chr1.4:45128221-45128240 | MS.gene46473:intron | 40.0% | |
| CTCCAATCAAGATGTTGTTG+TGG | + | chr1.4:45128662-45128681 | None:intergenic | 40.0% | |
| GGCAAATGGTTCCTGATAAT+TGG | - | chr1.4:45127337-45127356 | MS.gene46473:intron | 40.0% | |
| GTCCACAACAACATCTTGAT+TGG | - | chr1.4:45128657-45128676 | MS.gene46473:CDS | 40.0% | |
| GTGAAGAATGTGTTTGCAAC+CGG | - | chr1.4:45127225-45127244 | MS.gene46473:intron | 40.0% | |
| TCTGTTACAGGTTTCGTCAT+CGG | - | chr1.4:45127143-45127162 | MS.gene46473:intron | 40.0% | |
| TCTTCCAACCTAGTAATAGC+AGG | + | chr1.4:45128551-45128570 | None:intergenic | 40.0% | |
| TCTTTGTTAAGTTCCTGAGG+TGG | + | chr1.4:45128635-45128654 | None:intergenic | 40.0% | |
| TGGCAGATAGAGATTGTTGT+TGG | - | chr1.4:45127357-45127376 | MS.gene46473:intron | 40.0% | |
| ! | AGGGGTGATTTAGGATGAAT+AGG | + | chr1.4:45126402-45126421 | None:intergenic | 40.0% |
| ! | CAGATAGAGATTGTTGTTGG+TGG | - | chr1.4:45127360-45127379 | MS.gene46473:intron | 40.0% |
| ! | TACTACCAGCAAGAACCTTT+TGG | + | chr1.4:45127386-45127405 | None:intergenic | 40.0% |
| ! | TGATTGTTTCTTACCACCTC+AGG | - | chr1.4:45128619-45128638 | MS.gene46473:CDS | 40.0% |
| ! | TGGACTTTTAGTGCACTTAG+AGG | - | chr1.4:45128358-45128377 | MS.gene46473:intron | 40.0% |
| ! | TTACTAGGTTGGAAGAGTCA+TGG | - | chr1.4:45128555-45128574 | MS.gene46473:CDS | 40.0% |
| !!! | GACAACCATTGTCACTTTTC+CGG | + | chr1.4:45127247-45127266 | None:intergenic | 40.0% |
| ACCTCATTGAGGGGTGATTT+AGG | + | chr1.4:45126411-45126430 | None:intergenic | 45.0% | |
| AGGATGGACCTGCTATTACT+AGG | - | chr1.4:45128540-45128559 | MS.gene46473:CDS | 45.0% | |
| ATCCGAAGATTTCCTCAGGA+TGG | + | chr1.4:45126844-45126863 | None:intergenic | 45.0% | |
| ATCCTGAGGAAATCTTCGGA+TGG | - | chr1.4:45126843-45126862 | MS.gene46473:intron | 45.0% | |
| ATTCAGTGCAGCACAACACA+TGG | - | chr1.4:45128202-45128221 | MS.gene46473:intron | 45.0% | |
| CAACAATTCACAGCTGCAAC+AGG | - | chr1.4:45127180-45127199 | MS.gene46473:intron | 45.0% | |
| GATTGAACGAAGCGACAACA+CGG | - | chr1.4:45128289-45128308 | MS.gene46473:intron | 45.0% | |
| GTAGTAACGGCACTATTGCT+TGG | - | chr1.4:45127400-45127419 | MS.gene46473:intron | 45.0% | |
| TCCTAAATCACCCCTCAATG+AGG | - | chr1.4:45126407-45126426 | MS.gene46473:CDS | 45.0% | |
| TGCAACCGGAAAAGTGACAA+TGG | - | chr1.4:45127239-45127258 | MS.gene46473:intron | 45.0% | |
| TGGACCTGCTATTACTAGGT+TGG | - | chr1.4:45128544-45128563 | MS.gene46473:CDS | 45.0% | |
| TTCAGTGCAGCACAACACAT+GGG | - | chr1.4:45128203-45128222 | MS.gene46473:intron | 45.0% | |
| TTCCATCCGAAGATTTCCTC+AGG | + | chr1.4:45126848-45126867 | None:intergenic | 45.0% | |
| ! | GGTGTTATGATTGCACATGC+TGG | - | chr1.4:45128476-45128495 | MS.gene46473:CDS | 45.0% |
| !! | GATTGTTGTTGGTGGCCAAA+AGG | - | chr1.4:45127368-45127387 | MS.gene46473:intron | 45.0% |
| !! | TATAAACATTAATATTAAAA+GGG | + | chr1.4:45127055-45127074 | None:intergenic | 5.0% |
| !! | TTATAAACATTAATATTAAA+AGG | + | chr1.4:45127056-45127075 | None:intergenic | 5.0% |
| !! | TTTAATATTAATGTTTATAA+TGG | - | chr1.4:45127056-45127075 | MS.gene46473:intron | 5.0% |
| AACAGGGTGTAGGAAGTTGG+AGG | - | chr1.4:45127197-45127216 | MS.gene46473:intron | 50.0% | |
| ACAGGGTGTAGGAAGTTGGA+GGG | - | chr1.4:45127198-45127217 | MS.gene46473:intron | 50.0% | |
| CTAGCTGCAGGCCAATGAAT+TGG | - | chr1.4:45127945-45127964 | MS.gene46473:intron | 50.0% | |
| GAAGATTTCCTCAGGATGGC+CGG | + | chr1.4:45126840-45126859 | None:intergenic | 50.0% | |
| GGCCATCCTGAGGAAATCTT+CGG | - | chr1.4:45126839-45126858 | MS.gene46473:intron | 50.0% | |
| TCAGTGCAGCACAACACATG+GGG | - | chr1.4:45128204-45128223 | MS.gene46473:intron | 50.0% | |
| TGCAACAGGGTGTAGGAAGT+TGG | - | chr1.4:45127194-45127213 | MS.gene46473:intron | 50.0% | |
| !! | AGCCTGAGGGCGAGTTTTAT+CGG | + | chr1.4:45126817-45126836 | None:intergenic | 50.0% |
| ACCCGATAAAACTCGCCCTC+AGG | - | chr1.4:45126812-45126831 | MS.gene46473:intron | 55.0% | |
| ATGGTTGTCGTGGACGAGCT+TGG | - | chr1.4:45127258-45127277 | MS.gene46473:intron | 55.0% | |
| CACAGGCATATGCTAGCTGC+AGG | - | chr1.4:45127933-45127952 | MS.gene46473:intron | 55.0% | |
| CAGGGTGTAGGAAGTTGGAG+GGG | - | chr1.4:45127199-45127218 | MS.gene46473:intron | 55.0% | |
| CAGTGCAGCACAACACATGG+GGG | - | chr1.4:45128205-45128224 | MS.gene46473:intron | 55.0% | |
| GGTGGCCAAAAGGTTCTTGC+TGG | - | chr1.4:45127378-45127397 | MS.gene46473:intron | 55.0% | |
| TAAAACTCGCCCTCAGGCTC+CGG | - | chr1.4:45126818-45126837 | MS.gene46473:intron | 55.0% | |
| TCACAGCTGCAACAGGGTGT+AGG | - | chr1.4:45127187-45127206 | MS.gene46473:intron | 55.0% | |
| TGTCGTGGACGAGCTTGGAT+CGG | - | chr1.4:45127263-45127282 | MS.gene46473:intron | 55.0% | |
| TTGCTTGGCGTCACACACCT+TGG | - | chr1.4:45127415-45127434 | MS.gene46473:CDS | 55.0% | |
| !! | GCCTGAGGGCGAGTTTTATC+GGG | + | chr1.4:45126816-45126835 | None:intergenic | 55.0% |
| !! | GTCGGTGGTGGTGGTGTTAA+TGG | - | chr1.4:45127285-45127304 | MS.gene46473:intron | 55.0% |
| ACCTGAAGTGCACGGCGAAG+AGG | + | chr1.4:45127474-45127493 | None:intergenic | 60.0% | |
| GGTGTGCACGCTGCTAAAGG+CGG | - | chr1.4:45127441-45127460 | MS.gene46473:CDS | 60.0% | |
| GTGGACGAGCTTGGATCGGT+CGG | - | chr1.4:45127267-45127286 | MS.gene46473:intron | 60.0% | |
| TCCTCTTCGCCGTGCACTTC+AGG | - | chr1.4:45127470-45127489 | MS.gene46473:CDS | 60.0% | |
| TGGCGTCACACACCTTGGCT+CGG | - | chr1.4:45127420-45127439 | MS.gene46473:CDS | 60.0% | |
| ! | CTCGGTGTGCACGCTGCTAA+AGG | - | chr1.4:45127438-45127457 | MS.gene46473:CDS | 60.0% |
| GACGAGCTTGGATCGGTCGG+TGG | - | chr1.4:45127270-45127289 | MS.gene46473:intron | 65.0% | |
| GAGCTTGGATCGGTCGGTGG+TGG | - | chr1.4:45127273-45127292 | MS.gene46473:intron | 65.0% | |
| TCAGGATGGCCGGAGCCTGA+GGG | + | chr1.4:45126830-45126849 | None:intergenic | 65.0% | |
| ! | CTTGGATCGGTCGGTGGTGG+TGG | - | chr1.4:45127276-45127295 | MS.gene46473:intron | 65.0% |
| CTCAGGATGGCCGGAGCCTG+AGG | + | chr1.4:45126831-45126850 | None:intergenic | 70.0% | |
| CTCAGGCTCCGGCCATCCTG+AGG | - | chr1.4:45126829-45126848 | MS.gene46473:intron | 70.0% | |
| GCAGCGTGCACACCGAGCCA+AGG | + | chr1.4:45127435-45127454 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 45126201 | 45128700 | 45126201 | ID=MS.gene46473 |
| chr1.4 | mRNA | 45126201 | 45128700 | 45126201 | ID=MS.gene46473.t1;Parent=MS.gene46473 |
| chr1.4 | exon | 45128473 | 45128700 | 45128473 | ID=MS.gene46473.t1.exon1;Parent=MS.gene46473.t1 |
| chr1.4 | CDS | 45128473 | 45128700 | 45128473 | ID=cds.MS.gene46473.t1;Parent=MS.gene46473.t1 |
| chr1.4 | exon | 45127410 | 45127748 | 45127410 | ID=MS.gene46473.t1.exon2;Parent=MS.gene46473.t1 |
| chr1.4 | CDS | 45127410 | 45127748 | 45127410 | ID=cds.MS.gene46473.t1;Parent=MS.gene46473.t1 |
| chr1.4 | exon | 45126201 | 45126728 | 45126201 | ID=MS.gene46473.t1.exon3;Parent=MS.gene46473.t1 |
| chr1.4 | CDS | 45126201 | 45126728 | 45126201 | ID=cds.MS.gene46473.t1;Parent=MS.gene46473.t1 |
| Gene Sequence |
| Protein sequence |
