AlfalfaGEDB | MS.gene46473

M. sativa cultivar XinJiangDaYe / MS.gene46473

KEGG: -
GO: -
PFAM: PF04788.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46473.t1	XP_013467739.1	99.5	364	2	0	1	364	1	364	2.00E-212	748

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46473.t1	A0A072VJK1	99.5	364	2	0	1	364	1	364	1.4e-212	748.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene46473	0.805305	1.42E-49	-1.69E-46
MS.gene050020	MS.gene46473	0.82346	1.37E-53	-1.69E-46
MS.gene050586	MS.gene46473	0.827067	1.92E-54	-1.69E-46
MS.gene050807	MS.gene46473	0.83994	1.17E-57	-1.69E-46
MS.gene050808	MS.gene46473	0.814325	1.63E-51	-1.69E-46
MS.gene050815	MS.gene46473	0.812452	4.21E-51	-1.69E-46
MS.gene05157	MS.gene46473	0.815571	8.64E-52	-1.69E-46
MS.gene051719	MS.gene46473	0.824945	6.13E-54	-1.69E-46
MS.gene051720	MS.gene46473	0.813992	1.93E-51	-1.69E-46
MS.gene051789	MS.gene46473	0.80215	6.43E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46473.t1	MTR_1g054670	99.451	364	2	0	1	364	1	364	0.0	755
MS.gene46473.t1	MTR_6g445110	47.139	367	168	7	4	347	17	380	8.14e-113	334
MS.gene46473.t1	MTR_1g106875	48.045	358	162	7	4	347	74	421	4.97e-112	335
MS.gene46473.t1	MTR_1g018620	52.885	312	133	4	48	347	111	420	4.33e-111	332
MS.gene46473.t1	MTR_3g102670	48.000	300	144	4	60	348	93	391	1.85e-99	301
MS.gene46473.t1	MTR_3g069720	43.072	332	154	5	48	350	63	388	3.40e-90	278
MS.gene46473.t1	MTR_5g081550	41.615	322	164	5	50	350	58	376	1.32e-84	263
MS.gene46473.t1	MTR_1g022075	40.810	321	173	5	40	350	55	368	1.09e-74	236
MS.gene46473.t1	MTR_5g019880	39.871	311	177	4	45	347	67	375	1.60e-70	225
MS.gene46473.t1	MTR_3g111790	36.950	341	193	7	28	350	41	377	2.16e-69	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46473.t1	AT5G06610	61.281	359	132	5	1	354	1	357	2.41e-157	446
MS.gene46473.t1	AT3G19540	51.125	311	139	4	48	347	126	434	3.29e-112	336
MS.gene46473.t1	AT1G27690	47.671	365	172	5	4	350	49	412	1.08e-111	333
MS.gene46473.t1	AT1G49840	46.281	363	172	8	4	348	86	443	1.32e-107	324
MS.gene46473.t1	AT1G79420	42.674	389	175	8	4	350	20	402	2.15e-99	301
MS.gene46473.t1	AT5G05840	43.333	330	160	5	44	349	62	388	6.53e-92	282
MS.gene46473.t1	AT5G66740	40.181	331	181	6	32	347	38	366	5.87e-74	234
MS.gene46473.t1	AT3G55720	39.053	338	169	7	43	347	57	390	1.15e-70	228
MS.gene46473.t1	AT1G75160	40.193	311	168	8	55	350	87	394	2.46e-66	215

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Find 81 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCAGCCGATCAAA+AGG	0.470917	1.4:-45126617	MS.gene46473:CDS
AAAAGAACTTACCTCATTGA+GGG	0.521839	1.4:+45128461	None:intergenic
AAAAGTGACAATGGTTGTCG+TGG	0.609256	1.4:-45127631	MS.gene46473:CDS
AAAATGCTTCTTAGTGTTCT+TGG	0.223207	1.4:-45128522	MS.gene46473:CDS
AAAGAACTTACCTCATTGAG+GGG	0.670876	1.4:+45128462	None:intergenic
AACAATTCACAGCTGCAACA+GGG	0.653620	1.4:-45127698	MS.gene46473:CDS
AACAGGGTGTAGGAAGTTGG+AGG	0.584583	1.4:-45127682	MS.gene46473:CDS
AAGGTTCTTGCTGGTAGTAA+CGG	0.544977	1.4:-45127492	MS.gene46473:CDS
AAGGTTTGGTGATAATCTTA+AGG	0.444872	1.4:-45126359	MS.gene46473:CDS
AATACAGCTGATACTGCTAA+AGG	0.523894	1.4:+45126697	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAACTTACCTCATTG+AGG	+	chr1.4:45126422-45126441	None:intergenic	30.0%
AAAAGAACTTACCTCATTGA+GGG	+	chr1.4:45126421-45126440	None:intergenic	30.0%
AAAATGCTTCTTAGTGTTCT+TGG	-	chr1.4:45126357-45126376	MS.gene46473:CDS	30.0%
AAGCAAATGATCCAATTCAT+TGG	+	chr1.4:45127959-45127978	None:intergenic	30.0%
AAGGTTTAGTAAAGTGTGTT+TGG	+	chr1.4:45127700-45127719	None:intergenic	30.0%
ATGATAAAGCATGCTATCTT+TGG	-	chr1.4:45128317-45128336	MS.gene46473:intron	30.0%
GATGTTGCATTTAATGTTCA+AGG	-	chr1.4:45128587-45128606	MS.gene46473:CDS	30.0%
GTTAATGGAACTTCAGAAAA+AGG	-	chr1.4:45127300-45127319	MS.gene46473:intron	30.0%
TGGTTAGATTGAATAGTTGA+AGG	+	chr1.4:45127995-45128014	None:intergenic	30.0%
TTGATAGGTTCTTCTGATAA+TGG	+	chr1.4:45126219-45126238	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	45126201	45128700	45126201	ID=MS.gene46473
chr1.4	mRNA	45126201	45128700	45126201	ID=MS.gene46473.t1;Parent=MS.gene46473
chr1.4	exon	45128473	45128700	45128473	ID=MS.gene46473.t1.exon1;Parent=MS.gene46473.t1
chr1.4	CDS	45128473	45128700	45128473	ID=cds.MS.gene46473.t1;Parent=MS.gene46473.t1
chr1.4	exon	45127410	45127748	45127410	ID=MS.gene46473.t1.exon2;Parent=MS.gene46473.t1
chr1.4	CDS	45127410	45127748	45127410	ID=cds.MS.gene46473.t1;Parent=MS.gene46473.t1
chr1.4	exon	45126201	45126728	45126201	ID=MS.gene46473.t1.exon3;Parent=MS.gene46473.t1
chr1.4	CDS	45126201	45126728	45126201	ID=cds.MS.gene46473.t1;Parent=MS.gene46473.t1

Gene Sequence

>MS.gene46473

ATGGGTAGGCTTGCACCATTATCAGAAGAACCTATCAATGAAGAAAATGAAAGAAAATTATCAAAATATAACTCTAAGAAAGGTTTTCAGTTATGGATGAATTGGAGTTGGATCAAGACTCATTTTTCACTTGTTTTCAACAAGAAATCTAACCTCAAAATGCTTCTTAGTGTTCTTGGTTGTCCTCTTTTTCCTGTTCCTATTCATCCTAAATCACCCCTCAATGAGGTAAGTTCTTTTTGTTCTTCTCTTTACTTTTGATATCTAAAAGTTTAAAGTTCGATGCAAATTTTTATTTTTATGATTAATAATATCTCTAGTGTGATATAAAATGTATCTTATCACATAATTCTAAGAAGAAATAAAGTACTAGTAATGTTATGATTGTAAAACATTTCATTTCTCTTCATAATCATTCACATGAAAAATAAATAAAGCTGTTTTTTCTCTTTCCATTTTTAGTATATTGCTAAATATTTTTGTCGGTCATTTTTTAGACAAATATTAGTGTACTAGTAGTTTTTTTTCTCTTCCACCCAAATTTGAACTCATGTTTTAATTCCTTCAACCAAACCAAAAGTAAAGAAAAAATGCTTCTAATTATTGGTTTTACCCGATAAAACTCGCCCTCAGGCTCCGGCCATCCTGAGGAAATCTTCGGATGGAATCAAATACTAGACGGTTTGATTGGCTTTTTTGTTGATTGAAATAATGTCTCTATCAATTGAAATAATGTTCTTTGTTGATTGAAAATGGTTACTTACTGCCTTGAAAAAGTTAGCTAAAAGTGTTCAAATTTAGGAATATATATGTATATTTTGATCATTTTCTTATTTTACATCATATGAAACCCCTTTTAATATTAATGTTTATAATGGCTACCAATGTTACCTTGTATATGTAAAGTTTGATCCTTTTTCAGTGATCTTTATTTTGTTACAATCTGTTACAGGTTTCGTCATCGGCACAGTATATTATACAACAATTCACAGCTGCAACAGGGTGTAGGAAGTTGGAGGGGACAGTGAAGAATGTGTTTGCAACCGGAAAAGTGACAATGGTTGTCGTGGACGAGCTTGGATCGGTCGGTGGTGGTGGTGTTAATGGAACTTCAGAAAAAGGTTGTTTTGTGATGTGGCAAATGGTTCCTGATAATTGGCAGATAGAGATTGTTGTTGGTGGCCAAAAGGTTCTTGCTGGTAGTAACGGCACTATTGCTTGGCGTCACACACCTTGGCTCGGTGTGCACGCTGCTAAAGGCGGCGTTCGTCCTCTTCGCCGTGCACTTCAGGTAAGTTCATTTCCTAAACTTGATTTTGAATGTGATTGATTTTGGTTAAAACTGAATTCGAAGTGAAATGCTTTATACTTAGATGTTTGTACTTTGAAAACAAGTTTAGTATGAAATTTAGTGTAAACTTTTCGACATTACAAAAATGTTACTTATCATTAGTTCTATTCCTATAGACACAAAATCAATTCTGGTAACTGTTAAACCAAACACACTTTACTAAACCTTCAACTATTCCTATAGACACAAAATCAATTCTGGTAACTGTTAAACCAAACACACTTTACTAAACCTTCAAATAAGTTGTTTATAATCTCTTGATACTGTTGAACCTATGATGATGTTTGGAATATTAGCTATATAACATTGTAATTATGAGAAGAAAGATATTGTCATTTAACTACTGCTATGGTTCAAATTTAATAAACTTCAGCACTTCAACACAGGCATATGCTAGCTGCAGGCCAATGAATTGGATCATTTGCTTCCCTAATAAATTTCCTTCAACTATTCAATCTAACCACATTCCTAAACTTTCTTGTCTTTTTCTTTTTCAGTATAGTCATGAAGTTTGAACCTATGATTTGATAAATATCTAAAATAGCATCACTAGCTACTCTCAACTACTTTGTGATTTTTGTTACCTTAAAAACAAACATTAATTGTAGCTTTGCTATGTAGGGACTAGACCCTTTAGCAGTATCAGCTGTATTCAGTGCAGCACAACACATGGGGGAGAAACAAATCAACGGCGTAGATTGTTTCGTATTAAAACTCTCAGCCGATCAAAAGGACTTGATTGAACGAAGCGACAACACGGCCGAGATGATAAAGCATGCTATCTTTGGTTATTTTAGCCAAAGAAATGGACTTTTAGTGCACTTAGAGGACTCTTATTTGACAAGGATTCAAGCAATAGGGACAAATCCTACATATTGGGAAACAACAATGTCAACAAAAATTGAAGACTATAGAGATGTTGATGGTGTTATGATTGCACATGCTGGATCAACAACTGTGATGATAACAAGGTTTGGTGATAATCTTAAGGATGGACCTGCTATTACTAGGTTGGAAGAGTCATGGACTATTGATGATGTTGCATTTAATGTTCAAGGGTTGTCTATTGATTGTTTCTTACCACCTCAGGAACTTAACAAAGATTGTCCACAACAACATCTTGATTGGAGATCATCATTGCATAGATGA

Protein sequence

>MS.gene46473.t1

MGRLAPLSEEPINEENERKLSKYNSKKGFQLWMNWSWIKTHFSLVFNKKSNLKMLLSVLGCPLFPVPIHPKSPLNEVSSSAQYIIQQFTAATGCRKLEGTVKNVFATGKVTMVVVDELGSVGGGGVNGTSEKGCFVMWQMVPDNWQIEIVVGGQKVLAGSNGTIAWRHTPWLGVHAAKGGVRPLRRALQGLDPLAVSAVFSAAQHMGEKQINGVDCFVLKLSADQKDLIERSDNTAEMIKHAIFGYFSQRNGLLVHLEDSYLTRIQAIGTNPTYWETTMSTKIEDYRDVDGVMIAHAGSTTVMITRFGDNLKDGPAITRLEESWTIDDVAFNVQGLSIDCFLPPQELNKDCPQQHLDWRSSLHR