Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46608.t1 | XP_003599445.2 | 96.9 | 1052 | 33 | 0 | 1 | 1052 | 1 | 1052 | 0.00E+00 | 1890.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46608.t1 | Q9LFS8 | 60.0 | 1038 | 415 | 0 | 3 | 1040 | 2 | 1039 | 0.0e+00 | 1163.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46608.t1 | G7J0X6 | 96.9 | 1052 | 33 | 0 | 1 | 1052 | 1 | 1052 | 0.0e+00 | 1890.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043593 | MS.gene46608 | PPI |
| MS.gene46608 | MS.gene043595 | PPI |
| MS.gene064353 | MS.gene46608 | PPI |
| MS.gene035826 | MS.gene46608 | PPI |
| MS.gene46608 | MS.gene035825 | PPI |
| MS.gene064351 | MS.gene46608 | PPI |
| MS.gene035828 | MS.gene46608 | PPI |
| MS.gene46608 | MS.gene73093 | PPI |
| MS.gene99872 | MS.gene46608 | PPI |
| MS.gene043643 | MS.gene46608 | PPI |
| MS.gene043645 | MS.gene46608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46608.t1 | MTR_3g033470 | 98.289 | 1052 | 18 | 0 | 1 | 1052 | 1 | 1052 | 0.0 | 2138 |
| MS.gene46608.t1 | MTR_4g115050 | 94.428 | 1041 | 58 | 0 | 12 | 1052 | 1 | 1041 | 0.0 | 2004 |
| MS.gene46608.t1 | MTR_5g036370 | 81.966 | 1048 | 188 | 1 | 5 | 1052 | 6 | 1052 | 0.0 | 1747 |
| MS.gene46608.t1 | MTR_5g036330 | 89.212 | 241 | 26 | 0 | 812 | 1052 | 1 | 241 | 2.02e-154 | 457 |
| MS.gene46608.t1 | MTR_5g036300 | 73.387 | 124 | 19 | 2 | 912 | 1032 | 2 | 114 | 8.39e-49 | 169 |
| MS.gene46608.t1 | MTR_4g061050 | 23.096 | 394 | 242 | 12 | 22 | 366 | 22 | 403 | 4.48e-13 | 74.3 |
| MS.gene46608.t1 | MTR_4g036760 | 24.045 | 445 | 248 | 15 | 21 | 394 | 22 | 447 | 7.52e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46608.t1 | AT5G15920 | 61.620 | 1037 | 398 | 0 | 5 | 1041 | 4 | 1040 | 0.0 | 1289 |
| MS.gene46608.t1 | AT5G61460 | 21.172 | 1058 | 740 | 32 | 13 | 1004 | 6 | 1035 | 1.00e-19 | 95.9 |
| MS.gene46608.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 2.31e-13 | 75.5 |
| MS.gene46608.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 2.78e-13 | 75.1 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATCTTCCTTTCATTTAT+TGG | 0.074155 | 3.3:-24311568 | None:intergenic |
| TTCTACATGTTTCAGTTTAT+TGG | 0.091865 | 3.3:+24305709 | MS.gene46608:intron |
| TTGTAATTTGCTCCTCTTTA+TGG | 0.099665 | 3.3:-24296138 | None:intergenic |
| AATTGGGAATTACTAGTTTA+TGG | 0.115202 | 3.3:+24305770 | MS.gene46608:CDS |
| GACTAAAAGTTTCATTTATC+TGG | 0.131837 | 3.3:-24310850 | None:intergenic |
| ATCTCATCAACAACTCTAAA+TGG | 0.146895 | 3.3:-24311448 | None:intergenic |
| CATAAGTTCCATTCTCTTCT+TGG | 0.172420 | 3.3:-24301493 | None:intergenic |
| AAACTAGTAATTCCCAATTT+TGG | 0.177598 | 3.3:-24305766 | None:intergenic |
| AGCTGATGGGGTACCAAAAT+TGG | 0.185941 | 3.3:+24305753 | MS.gene46608:CDS |
| CCATAATGCAATTAAAATTA+AGG | 0.190460 | 3.3:+24306598 | MS.gene46608:CDS |
| AGCACTCACTGTGGTGTATT+TGG | 0.192925 | 3.3:-24311619 | None:intergenic |
| GTGAAGCGGGGAGAAGATTC+TGG | 0.232032 | 3.3:+24296088 | MS.gene46608:CDS |
| CTTACATTGGCAGATATTTC+AGG | 0.233435 | 3.3:-24305383 | None:intergenic |
| GAATTCCACAAGGAGGTTTA+TGG | 0.241297 | 3.3:+24304280 | MS.gene46608:CDS |
| GATATGGACTTTGATCAATT+TGG | 0.248571 | 3.3:+24311002 | MS.gene46608:CDS |
| CCTCGATTGAATCTCGTAAT+TGG | 0.254987 | 3.3:+24295865 | MS.gene46608:CDS |
| ATATGTTATTATTGACAAAA+AGG | 0.257309 | 3.3:-24310284 | None:intergenic |
| ATATATACCTCAACTAAAAC+TGG | 0.263878 | 3.3:-24304304 | None:intergenic |
| GCAGATCTGGTAACAACTTT+GGG | 0.277791 | 3.3:-24312016 | None:intergenic |
| GTTAACTCCTGTGCAACTTC+TGG | 0.284125 | 3.3:+24298054 | MS.gene46608:CDS |
| TTGTAAAATTTGCAGGTTGA+TGG | 0.302713 | 3.3:+24304159 | MS.gene46608:intron |
| AGGAAATATTGTGCCCAAAA+AGG | 0.305620 | 3.3:+24296824 | MS.gene46608:intron |
| TCTTGGCATTGTCACTTATT+CGG | 0.308112 | 3.3:-24301476 | None:intergenic |
| TCATGAACAAATTGCTTCCT+TGG | 0.327808 | 3.3:+24306057 | MS.gene46608:CDS |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 3.3:-24296878 | None:intergenic |
| GTAATTGGGCCAAATGGTTC+TGG | 0.330469 | 3.3:+24295880 | MS.gene46608:CDS |
| CTTGTATGTGCTATTGCTCT+TGG | 0.333455 | 3.3:+24295913 | MS.gene46608:CDS |
| TTGCATGCATTGCGAAAATC+TGG | 0.335891 | 3.3:+24304208 | MS.gene46608:CDS |
| GAAAGGATAGCATACTTAAT+AGG | 0.342576 | 3.3:-24298740 | None:intergenic |
| GGAAAGAAGCTTTGTGAATC+AGG | 0.346798 | 3.3:+24306108 | MS.gene46608:CDS |
| CAAGAAGAGAATGGAACTTA+TGG | 0.353352 | 3.3:+24301494 | MS.gene46608:CDS |
| TACATATAAAAGTCAAATTC+AGG | 0.356363 | 3.3:+24311027 | MS.gene46608:CDS |
| TCAATCTCTAAAATGTTTCC+AGG | 0.357210 | 3.3:-24295796 | None:intergenic |
| TTTCAACAGATGGCTGTTGC+TGG | 0.358447 | 3.3:+24310878 | MS.gene46608:CDS |
| CAAGCAATTGTTAGGCGTAT+TGG | 0.366177 | 3.3:+24306376 | MS.gene46608:CDS |
| TGGGAGAGCCACAAGTATTC+AGG | 0.367068 | 3.3:+24296060 | MS.gene46608:CDS |
| TGCAGATCTGGTAACAACTT+TGG | 0.372012 | 3.3:-24312017 | None:intergenic |
| TACAAGGTGTCTGGCTGAAC+TGG | 0.374002 | 3.3:+24310450 | MS.gene46608:CDS |
| TCCCCGCGATCGGGACTTCT+TGG | 0.375328 | 3.3:+24305289 | MS.gene46608:CDS |
| TTTCAGGAGGCGGCTCTCTT+CGG | 0.376451 | 3.3:-24305367 | None:intergenic |
| CTTCTCAGATGAGCATGATA+TGG | 0.377932 | 3.3:+24310986 | MS.gene46608:intron |
| TACGACTTTCTGCAGTTGCT+TGG | 0.381497 | 3.3:+24296040 | MS.gene46608:intron |
| TCATCCTTGGGAAGTTCATA+AGG | 0.384937 | 3.3:-24301882 | None:intergenic |
| GTTAGCAAAGCTTGTTGATC+AGG | 0.388465 | 3.3:+24306550 | MS.gene46608:CDS |
| CAGCATTACGTTCCTTCAAC+TGG | 0.389030 | 3.3:-24298288 | None:intergenic |
| ATTAGATGCAAAGTGCAAAA+AGG | 0.390121 | 3.3:+24301446 | MS.gene46608:CDS |
| GGCTGAACTGGATAACATTA+AGG | 0.392082 | 3.3:+24310462 | MS.gene46608:CDS |
| AACACCTCCTTGACAGCAAC+AGG | 0.393672 | 3.3:-24305525 | None:intergenic |
| CATTGGTCTAAGTCTAGATA+TGG | 0.405667 | 3.3:+24305811 | MS.gene46608:CDS |
| GGAATTCATCGCGATGCTCT+TGG | 0.407101 | 3.3:-24304264 | None:intergenic |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 3.3:-24312029 | None:intergenic |
| TATGAGAAATTACCCTTTGA+GGG | 0.412265 | 3.3:-24312095 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 3.3:+24304436 | MS.gene46608:CDS |
| ACGACTTTCTGCAGTTGCTT+GGG | 0.420717 | 3.3:+24296041 | MS.gene46608:intron |
| TGGCTTGTGAAGTTGTATCT+TGG | 0.427489 | 3.3:-24310254 | None:intergenic |
| TGATGCTCCTGTTGCTGTCA+AGG | 0.428280 | 3.3:+24305518 | MS.gene46608:CDS |
| CACACTTACAATCTCATCCT+TGG | 0.433193 | 3.3:-24301895 | None:intergenic |
| GAACTCTTTCCAGAACCATT+TGG | 0.439353 | 3.3:-24295889 | None:intergenic |
| TGACCAGTATAATTTAAAAC+TGG | 0.439540 | 3.3:-24305338 | None:intergenic |
| TCTCTAGGTCGGGTGTAAGC+CGG | 0.441950 | 3.3:-24308820 | None:intergenic |
| CTCGATTGAATCTCGTAATT+GGG | 0.446122 | 3.3:+24295866 | MS.gene46608:CDS |
| CATCCTTGGGAAGTTCATAA+GGG | 0.449595 | 3.3:-24301881 | None:intergenic |
| GCGTGAGAAGGCTGCAGCAA+AGG | 0.451443 | 3.3:+24298676 | MS.gene46608:CDS |
| ACTAAAAGTTTCATTTATCT+GGG | 0.451888 | 3.3:-24310849 | None:intergenic |
| TAACATATTGGAACAATATG+AGG | 0.452120 | 3.3:+24310299 | MS.gene46608:CDS |
| CTCAGCGCCCATCATCAATC+TGG | 0.453912 | 3.3:+24311281 | MS.gene46608:CDS |
| TGCTAATCTTCGTAAGCAAT+TGG | 0.454477 | 3.3:+24306132 | MS.gene46608:CDS |
| CACCAGAAAATCACTATCAT+TGG | 0.458529 | 3.3:+24305794 | MS.gene46608:CDS |
| GAGAGAGGGAATTGTGGAGT+TGG | 0.462077 | 3.3:+24303974 | MS.gene46608:CDS |
| TTCATGAAGCTCCCTTTCCT+CGG | 0.462694 | 3.3:-24306041 | None:intergenic |
| GCCTACTACAATCGAGGAGT+TGG | 0.465615 | 3.3:+24310221 | MS.gene46608:CDS |
| GTCTCTTCCAGAAGTTGCAC+AGG | 0.473226 | 3.3:-24298061 | None:intergenic |
| AATCTCGTAATTGGGCCAAA+TGG | 0.473861 | 3.3:+24295874 | MS.gene46608:CDS |
| CACTAGCAACAAGTCAGAAT+GGG | 0.474858 | 3.3:+24296177 | MS.gene46608:CDS |
| CTCTAGGTCGGGTGTAAGCC+GGG | 0.475153 | 3.3:-24308819 | None:intergenic |
| CTGAATGATCAAGATTAGAT+TGG | 0.476451 | 3.3:-24305554 | None:intergenic |
| GCTGATGGGGTACCAAAATT+GGG | 0.477526 | 3.3:+24305754 | MS.gene46608:CDS |
| TGGCCTATGCGGAGAGCCCC+AGG | 0.479460 | 3.3:+24295933 | MS.gene46608:CDS |
| AAGAGCGACAAGCAATTGTT+AGG | 0.480114 | 3.3:+24306368 | MS.gene46608:CDS |
| GGGGAGGATGATTATATGCC+TGG | 0.481452 | 3.3:+24295778 | MS.gene46608:CDS |
| CACCAAGAAGTCCCGATCGC+GGG | 0.483962 | 3.3:-24305291 | None:intergenic |
| ACGAGATTCAATCGAGGCCC+GGG | 0.484233 | 3.3:-24295859 | None:intergenic |
| TATTCAGGCATTTGTGAAGC+GGG | 0.485114 | 3.3:+24296075 | MS.gene46608:CDS |
| TGAACAAATTGCTTCCTTGG+AGG | 0.485274 | 3.3:+24306060 | MS.gene46608:CDS |
| TGATAATCAGTGTGGACTGC+TGG | 0.485310 | 3.3:+24312178 | MS.gene46608:intron |
| GTTGTTGATGAGATCAATCA+AGG | 0.485873 | 3.3:+24311457 | MS.gene46608:CDS |
| TGAAGCGGGGAGAAGATTCT+GGG | 0.486260 | 3.3:+24296089 | MS.gene46608:CDS |
| TCTCGGTATCAACTCTCGTT+TGG | 0.486444 | 3.3:+24305485 | MS.gene46608:CDS |
| TTTCATTGAATTTGATGCAA+AGG | 0.487383 | 3.3:+24307093 | MS.gene46608:CDS |
| GGATCTGAGCTCCGAGGAAA+GGG | 0.487507 | 3.3:+24306030 | MS.gene46608:CDS |
| GAAGGAATCTACAAGGTGTC+TGG | 0.489449 | 3.3:+24310441 | MS.gene46608:CDS |
| TACGAGATTCAATCGAGGCC+CGG | 0.492221 | 3.3:-24295860 | None:intergenic |
| AACACAGGATCCCCGCGATC+GGG | 0.493268 | 3.3:+24305280 | MS.gene46608:CDS |
| TTGGATGTTAAACCTCTGAA+TGG | 0.494697 | 3.3:-24296859 | None:intergenic |
| TTATAGGAGGTGGAATTACA+AGG | 0.494713 | 3.3:+24301747 | MS.gene46608:intron |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 3.3:-24311447 | None:intergenic |
| GTATGAGAAATTACCCTTTG+AGG | 0.496181 | 3.3:-24312096 | None:intergenic |
| GATGGACGAGTTGAGGAAGC+AGG | 0.496512 | 3.3:+24301782 | MS.gene46608:CDS |
| ACACTAGCAACAAGTCAGAA+TGG | 0.497417 | 3.3:+24296176 | MS.gene46608:CDS |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 3.3:+24304427 | MS.gene46608:CDS |
| AGAAATTCCTTCTCTAGGTC+GGG | 0.499819 | 3.3:-24308830 | None:intergenic |
| TCGCAATGCATGCAAACACT+TGG | 0.502771 | 3.3:-24304200 | None:intergenic |
| CCTCAAGAAATTCCTTCTCT+AGG | 0.511891 | 3.3:-24308835 | None:intergenic |
| ATAAGTGCACGATGTTGCTC+TGG | 0.514176 | 3.3:-24298112 | None:intergenic |
| AAGAAATTCCTTCTCTAGGT+CGG | 0.514868 | 3.3:-24308831 | None:intergenic |
| TCCAACTCCTCGATTGTAGT+AGG | 0.515559 | 3.3:-24310222 | None:intergenic |
| ACACTTACAATCTCATCCTT+GGG | 0.518016 | 3.3:-24301894 | None:intergenic |
| AGGAACTTTAAACCAGTTGA+AGG | 0.518067 | 3.3:+24298276 | MS.gene46608:CDS |
| TAGACTGAGAGAGGGAATTG+TGG | 0.518288 | 3.3:+24303968 | MS.gene46608:CDS |
| AGGATCTGAGCTCCGAGGAA+AGG | 0.519212 | 3.3:+24306029 | MS.gene46608:CDS |
| TGCAGCAAAGGAGCTTGAGA+AGG | 0.522295 | 3.3:+24298688 | MS.gene46608:CDS |
| CAACCTGGGGCTCTCCGCAT+AGG | 0.523869 | 3.3:-24295936 | None:intergenic |
| GCACATTAAGATTACCTTGA+GGG | 0.528192 | 3.3:+24296111 | MS.gene46608:CDS |
| GTACCCCTCCAGATTGATGA+TGG | 0.530960 | 3.3:-24311289 | None:intergenic |
| TTTAAATGTGAGGGACATTG+AGG | 0.531854 | 3.3:+24306009 | MS.gene46608:CDS |
| ATATGAGGCTCGTCAGAGAC+AGG | 0.533677 | 3.3:+24310314 | MS.gene46608:CDS |
| TTTGAGGGTTGCTCAATCCA+AGG | 0.533889 | 3.3:-24312080 | None:intergenic |
| CCACGAGGTTTCTCAATGTA+GGG | 0.535694 | 3.3:-24310826 | None:intergenic |
| GTCTCAGATCAATCTCATGC+TGG | 0.536098 | 3.3:+24304402 | MS.gene46608:CDS |
| TGACAATGCCAAGAAGAGAA+TGG | 0.536503 | 3.3:+24301485 | MS.gene46608:CDS |
| ACAAAGAGATGGACGAGTTG+AGG | 0.537247 | 3.3:+24301775 | MS.gene46608:CDS |
| TTGGATTGAGCAACCCTCAA+AGG | 0.539296 | 3.3:+24312082 | MS.gene46608:CDS |
| GTTGCTGGAGAAGTTTCACT+AGG | 0.539741 | 3.3:+24310893 | MS.gene46608:CDS |
| AAAACTCGATGCTGACAAGA+AGG | 0.542595 | 3.3:+24310423 | MS.gene46608:CDS |
| TCTTACCAGATGCGTGCTCT+CGG | 0.544720 | 3.3:+24305468 | MS.gene46608:intron |
| TAACACAGGATCCCCGCGAT+CGG | 0.545496 | 3.3:+24305279 | MS.gene46608:CDS |
| GGCTGAATATCGTGAAGCTA+AGG | 0.546055 | 3.3:+24298652 | MS.gene46608:CDS |
| TGGATTGAGCAACCCTCAAA+GGG | 0.546089 | 3.3:+24312083 | MS.gene46608:CDS |
| GAAAAGCAAACTGAAATCGA+TGG | 0.549349 | 3.3:+24306502 | MS.gene46608:CDS |
| TTGGCAGATATTTCAGGAGG+CGG | 0.549355 | 3.3:-24305377 | None:intergenic |
| GATTACTTAAAATGTAAACC+CGG | 0.551566 | 3.3:+24295841 | MS.gene46608:CDS |
| CGATGTTGCTCTGGAAGTTG+TGG | 0.553682 | 3.3:-24298103 | None:intergenic |
| ATACTATTCACTAGAAGTTG+AGG | 0.553846 | 3.3:-24305871 | None:intergenic |
| ACTTCTGGAAGAGACAGAAA+AGG | 0.555047 | 3.3:+24298069 | MS.gene46608:CDS |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 3.3:+24312063 | MS.gene46608:CDS |
| AAGAGATGAACTTCTTGCCA+AGG | 0.555563 | 3.3:+24298342 | MS.gene46608:CDS |
| CTATTTAGATTTAAATGTGA+GGG | 0.555671 | 3.3:+24306000 | MS.gene46608:intron |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 3.3:+24312211 | MS.gene46608:CDS |
| CCTAGAGAAGGAATTTCTTG+AGG | 0.557053 | 3.3:+24308835 | MS.gene46608:CDS |
| GAAACTGATCAGAAAGCTGA+TGG | 0.558582 | 3.3:+24305739 | MS.gene46608:CDS |
| ACTTCTTGGTGAACAACCTA+CGG | 0.563548 | 3.3:+24305303 | MS.gene46608:CDS |
| CTAAGCGCCACAAAATCAGC+AGG | 0.568080 | 3.3:+24294910 | MS.gene46608:CDS |
| CTGGTACATCGTAGTTCCGT+AGG | 0.569457 | 3.3:-24305319 | None:intergenic |
| TGCATTGAAGCATGTTGAGC+TGG | 0.570946 | 3.3:+24298147 | MS.gene46608:CDS |
| AAAAGAAATTGCCATGGCTG+AGG | 0.571274 | 3.3:+24298615 | MS.gene46608:CDS |
| TACTATTCACTAGAAGTTGA+GGG | 0.572061 | 3.3:-24305870 | None:intergenic |
| TTGAGGGTTGCTCAATCCAA+GGG | 0.572526 | 3.3:-24312079 | None:intergenic |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 3.3:+24312202 | MS.gene46608:CDS |
| GGATCTTCTTGTTGAAGCCG+CGG | 0.574639 | 3.3:+24307036 | MS.gene46608:intron |
| TGCATGCATTGCGAAAATCT+GGG | 0.575622 | 3.3:+24304209 | MS.gene46608:CDS |
| GATCTTCTTGTTGAAGCCGC+GGG | 0.577579 | 3.3:+24307037 | MS.gene46608:CDS |
| AAACTGATCAGAAAGCTGAT+GGG | 0.580201 | 3.3:+24305740 | MS.gene46608:CDS |
| AGCGCCCATCATCAATCTGG+AGG | 0.582072 | 3.3:+24311284 | MS.gene46608:CDS |
| ATCTCATGCTGGATATCTAG+AGG | 0.584471 | 3.3:+24304413 | MS.gene46608:CDS |
| GAAGAGACAGAAAAGGCTGT+TGG | 0.586153 | 3.3:+24298076 | MS.gene46608:CDS |
| AGCAAAGGAGCTTGAGAAGG+CGG | 0.586361 | 3.3:+24298691 | MS.gene46608:CDS |
| CACAAATGCCTGAATACTTG+TGG | 0.586797 | 3.3:-24296068 | None:intergenic |
| TGAAGCTAAGGAGCGTGAGA+AGG | 0.588670 | 3.3:+24298664 | MS.gene46608:CDS |
| TTACCAGCATAGACTGAGAG+AGG | 0.589240 | 3.3:+24303959 | MS.gene46608:intron |
| GTATTCAGGCATTTGTGAAG+CGG | 0.589507 | 3.3:+24296074 | MS.gene46608:CDS |
| TATAGGAGGTGGAATTACAA+GGG | 0.590156 | 3.3:+24301748 | MS.gene46608:intron |
| ACTATGCTAAGTCAATTGCC+CGG | 0.593996 | 3.3:+24308801 | MS.gene46608:CDS |
| GAATGGATCCAATAAATGAA+AGG | 0.594716 | 3.3:+24311560 | MS.gene46608:CDS |
| TGTGGACTGCTGGTGATCGA+TGG | 0.594783 | 3.3:+24312188 | MS.gene46608:CDS |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 3.3:+24304440 | MS.gene46608:CDS |
| CACATTAAGATTACCTTGAG+GGG | 0.596280 | 3.3:+24296112 | MS.gene46608:CDS |
| CTGGGCCATAAACCTCCTTG+TGG | 0.598562 | 3.3:-24304285 | None:intergenic |
| GCCACGAGGTTTCTCAATGT+AGG | 0.601181 | 3.3:-24310827 | None:intergenic |
| CGCCCATCATCAATCTGGAG+GGG | 0.603760 | 3.3:+24311286 | MS.gene46608:CDS |
| ACCAAGAAGTCCCGATCGCG+GGG | 0.605568 | 3.3:-24305290 | None:intergenic |
| ACAAGGGAAGTACAAAGAGA+TGG | 0.607131 | 3.3:+24301764 | MS.gene46608:CDS |
| ATTACTTAAAATGTAAACCC+GGG | 0.608024 | 3.3:+24295842 | MS.gene46608:CDS |
| AAACCCTTATGAACTTCCCA+AGG | 0.608677 | 3.3:+24301878 | MS.gene46608:CDS |
| GCGCCCATCATCAATCTGGA+GGG | 0.610882 | 3.3:+24311285 | MS.gene46608:CDS |
| ACGTAATGCTGAATTAGAGA+AGG | 0.611337 | 3.3:+24298300 | MS.gene46608:CDS |
| AATGCAGTCTTTCATAACAC+AGG | 0.612682 | 3.3:+24305265 | MS.gene46608:intron |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 3.3:+24312056 | MS.gene46608:CDS |
| TATGGAGAAAGAGAATCGAT+TGG | 0.615838 | 3.3:+24301512 | MS.gene46608:CDS |
| TTCATATCATACCTCAGCCA+TGG | 0.617052 | 3.3:-24298626 | None:intergenic |
| CTGACAAGAAGGAATCTACA+AGG | 0.619435 | 3.3:+24310434 | MS.gene46608:CDS |
| TACCCCTCCAGATTGATGAT+GGG | 0.619544 | 3.3:-24311288 | None:intergenic |
| CAGATCTGGTAACAACTTTG+GGG | 0.622648 | 3.3:-24312015 | None:intergenic |
| GCTGAGGTATGATATGAAGC+AGG | 0.623097 | 3.3:+24298631 | MS.gene46608:CDS |
| AACTCACAGACCCTGTCTTG+CGG | 0.625196 | 3.3:-24298025 | None:intergenic |
| GCATGCATTGCGAAAATCTG+GGG | 0.632232 | 3.3:+24304210 | MS.gene46608:CDS |
| GCTTACACCCGACCTAGAGA+AGG | 0.633634 | 3.3:+24308823 | MS.gene46608:CDS |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 3.3:+24312028 | MS.gene46608:CDS |
| TCTTTAGATTGGAGAAGCGG+AGG | 0.635604 | 3.3:+24308601 | MS.gene46608:intron |
| AACTGATCAGAAAGCTGATG+GGG | 0.635613 | 3.3:+24305741 | MS.gene46608:CDS |
| TATATACCTCAACTAAAACT+GGG | 0.637444 | 3.3:-24304303 | None:intergenic |
| CTTTGATGAAGTGTAAAGAG+AGG | 0.639262 | 3.3:+24304066 | MS.gene46608:CDS |
| ACTATTTAGATTTAAATGTG+AGG | 0.639567 | 3.3:+24305999 | MS.gene46608:intron |
| ATTCAGGCATTTGTGAAGCG+GGG | 0.642294 | 3.3:+24296076 | MS.gene46608:CDS |
| ACATTAAGATTACCTTGAGG+GGG | 0.645553 | 3.3:+24296113 | MS.gene46608:CDS |
| TGCTCCTGTTGCTGTCAAGG+AGG | 0.645592 | 3.3:+24305521 | MS.gene46608:CDS |
| TGAGGAAGCAGGAAGAAACT+CGG | 0.649381 | 3.3:+24301793 | MS.gene46608:CDS |
| AGAATGTAGACAGAAGCTTA+CGG | 0.650313 | 3.3:+24308769 | MS.gene46608:CDS |
| TACCAGCATAGACTGAGAGA+GGG | 0.652689 | 3.3:+24303960 | MS.gene46608:intron |
| ACATTGGCAGATATTTCAGG+AGG | 0.653264 | 3.3:-24305380 | None:intergenic |
| ATGTGGCTGAAACCATTCAG+AGG | 0.657774 | 3.3:+24296847 | MS.gene46608:CDS |
| GGCACATTAAGATTACCTTG+AGG | 0.658678 | 3.3:+24296110 | MS.gene46608:CDS |
| TCTCATGCTGGATATCTAGA+GGG | 0.660256 | 3.3:+24304414 | MS.gene46608:CDS |
| TCACCAAGAAGTCCCGATCG+CGG | 0.665560 | 3.3:-24305292 | None:intergenic |
| TTAGATGCCTACTACAATCG+AGG | 0.670737 | 3.3:+24310215 | MS.gene46608:intron |
| CATTAAGATTACCTTGAGGG+GGG | 0.680350 | 3.3:+24296114 | MS.gene46608:CDS |
| AAGCAAACTGAAATCGATGG+AGG | 0.682425 | 3.3:+24306505 | MS.gene46608:CDS |
| GCTATTGCTCTTGGCCTATG+CGG | 0.686307 | 3.3:+24295922 | MS.gene46608:CDS |
| CATTGAGGATCTGAGCTCCG+AGG | 0.695183 | 3.3:+24306024 | MS.gene46608:CDS |
| TTTCATTTATCTGGGCCACG+AGG | 0.696303 | 3.3:-24310841 | None:intergenic |
| CCCTACATTGAGAAACCTCG+TGG | 0.704731 | 3.3:+24310826 | MS.gene46608:CDS |
| CCAATTACGAGATTCAATCG+AGG | 0.705532 | 3.3:-24295865 | None:intergenic |
| GCATCGCGATGAATTCCACA+AGG | 0.711479 | 3.3:+24304270 | MS.gene46608:CDS |
| TCGCGATGAATTCCACAAGG+AGG | 0.719403 | 3.3:+24304273 | MS.gene46608:CDS |
| AAAACTTCGTCTGTAACCCG+CGG | 0.753881 | 3.3:-24307053 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 24294891 | 24312249 | 24294891 | ID=MS.gene46608 |
| chr3.3 | mRNA | 24294891 | 24312249 | 24294891 | ID=MS.gene46608.t1;Parent=MS.gene46608 |
| chr3.3 | exon | 24294891 | 24294931 | 24294891 | ID=MS.gene46608.t1.exon1;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24294891 | 24294931 | 24294891 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24295777 | 24295954 | 24295777 | ID=MS.gene46608.t1.exon2;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24295777 | 24295954 | 24295777 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24296055 | 24296208 | 24296055 | ID=MS.gene46608.t1.exon3;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24296055 | 24296208 | 24296055 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24296826 | 24296899 | 24296826 | ID=MS.gene46608.t1.exon4;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24296826 | 24296899 | 24296826 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24298019 | 24298168 | 24298019 | ID=MS.gene46608.t1.exon5;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24298019 | 24298168 | 24298019 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24298259 | 24298363 | 24298259 | ID=MS.gene46608.t1.exon6;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24298259 | 24298363 | 24298259 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24298602 | 24298747 | 24298602 | ID=MS.gene46608.t1.exon7;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24298602 | 24298747 | 24298602 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24301422 | 24301533 | 24301422 | ID=MS.gene46608.t1.exon8;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24301422 | 24301533 | 24301422 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24301753 | 24301908 | 24301753 | ID=MS.gene46608.t1.exon9;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24301753 | 24301908 | 24301753 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24303966 | 24304087 | 24303966 | ID=MS.gene46608.t1.exon10;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24303966 | 24304087 | 24303966 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24304174 | 24304318 | 24304174 | ID=MS.gene46608.t1.exon11;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24304174 | 24304318 | 24304174 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24304396 | 24304461 | 24304396 | ID=MS.gene46608.t1.exon12;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24304396 | 24304461 | 24304396 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24305272 | 24305400 | 24305272 | ID=MS.gene46608.t1.exon13;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24305272 | 24305400 | 24305272 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24305477 | 24305575 | 24305477 | ID=MS.gene46608.t1.exon14;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24305477 | 24305575 | 24305477 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24305724 | 24305889 | 24305724 | ID=MS.gene46608.t1.exon15;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24305724 | 24305889 | 24305724 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24306008 | 24306153 | 24306008 | ID=MS.gene46608.t1.exon16;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24306008 | 24306153 | 24306008 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24306334 | 24306397 | 24306334 | ID=MS.gene46608.t1.exon17;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24306334 | 24306397 | 24306334 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24306495 | 24306619 | 24306495 | ID=MS.gene46608.t1.exon18;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24306495 | 24306619 | 24306495 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24307037 | 24307114 | 24307037 | ID=MS.gene46608.t1.exon19;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24307037 | 24307114 | 24307037 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24308608 | 24308680 | 24308608 | ID=MS.gene46608.t1.exon20;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24308608 | 24308680 | 24308608 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24308753 | 24308856 | 24308753 | ID=MS.gene46608.t1.exon21;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24308753 | 24308856 | 24308753 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24310219 | 24310335 | 24310219 | ID=MS.gene46608.t1.exon22;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24310219 | 24310335 | 24310219 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24310406 | 24310483 | 24310406 | ID=MS.gene46608.t1.exon23;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24310406 | 24310483 | 24310406 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24310815 | 24310914 | 24310815 | ID=MS.gene46608.t1.exon24;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24310815 | 24310914 | 24310815 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24310994 | 24311048 | 24310994 | ID=MS.gene46608.t1.exon25;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24310994 | 24311048 | 24310994 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24311259 | 24311307 | 24311259 | ID=MS.gene46608.t1.exon26;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24311259 | 24311307 | 24311259 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24311391 | 24311478 | 24311391 | ID=MS.gene46608.t1.exon27;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24311391 | 24311478 | 24311391 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24311560 | 24311632 | 24311560 | ID=MS.gene46608.t1.exon28;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24311560 | 24311632 | 24311560 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24312001 | 24312104 | 24312001 | ID=MS.gene46608.t1.exon29;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24312001 | 24312104 | 24312001 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| chr3.3 | exon | 24312188 | 24312249 | 24312188 | ID=MS.gene46608.t1.exon30;Parent=MS.gene46608.t1 |
| chr3.3 | CDS | 24312188 | 24312249 | 24312188 | ID=cds.MS.gene46608.t1;Parent=MS.gene46608.t1 |
| Gene Sequence |
| Protein sequence |
