Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46919.t1 | XP_003590328.1 | 99.7 | 288 | 1 | 0 | 1 | 288 | 1 | 288 | 1.30E-151 | 545.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46919.t1 | Q9ZSD4 | 69.6 | 293 | 80 | 2 | 1 | 287 | 1 | 290 | 8.1e-107 | 388.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46919.t1 | B7FI20 | 99.7 | 288 | 1 | 0 | 1 | 288 | 1 | 288 | 9.1e-152 | 545.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene46919 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene051341 | MS.gene46919 | 0.804495 | 2.10E-49 | -1.69E-46 |
| MS.gene052091 | MS.gene46919 | 0.820402 | 6.99E-53 | -1.69E-46 |
| MS.gene053932 | MS.gene46919 | 0.821333 | 4.27E-53 | -1.69E-46 |
| MS.gene055549 | MS.gene46919 | 0.808145 | 3.58E-50 | -1.69E-46 |
| MS.gene055550 | MS.gene46919 | 0.815139 | 1.08E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene46919 | 0.822167 | 2.74E-53 | -1.69E-46 |
| MS.gene058629 | MS.gene46919 | 0.814735 | 1.32E-51 | -1.69E-46 |
| MS.gene058630 | MS.gene46919 | 0.819913 | 9.05E-53 | -1.69E-46 |
| MS.gene059690 | MS.gene46919 | 0.80722 | 5.62E-50 | -1.69E-46 |
| MS.gene059694 | MS.gene46919 | 0.804319 | 2.29E-49 | -1.69E-46 |
| MS.gene059697 | MS.gene46919 | 0.803208 | 3.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46919.t1 | MTR_1g056550 | 99.673 | 306 | 1 | 0 | 1 | 306 | 1 | 306 | 0.0 | 627 |
| MS.gene46919.t1 | MTR_7g106420 | 69.686 | 287 | 74 | 2 | 1 | 287 | 1 | 274 | 4.06e-145 | 410 |
| MS.gene46919.t1 | MTR_1g056560 | 66.212 | 293 | 91 | 3 | 1 | 287 | 1 | 291 | 3.22e-140 | 399 |
| MS.gene46919.t1 | MTR_2g012270 | 55.082 | 305 | 127 | 2 | 1 | 304 | 1 | 296 | 2.55e-128 | 368 |
| MS.gene46919.t1 | MTR_4g090900 | 59.028 | 288 | 109 | 3 | 1 | 287 | 1 | 280 | 1.03e-122 | 353 |
| MS.gene46919.t1 | MTR_5g012010 | 43.581 | 296 | 156 | 3 | 1 | 285 | 1 | 296 | 1.55e-86 | 262 |
| MS.gene46919.t1 | MTR_6g028140 | 44.637 | 289 | 149 | 3 | 1 | 287 | 1 | 280 | 2.99e-80 | 246 |
| MS.gene46919.t1 | MTR_2g088700 | 42.434 | 304 | 171 | 2 | 1 | 303 | 1 | 301 | 1.05e-78 | 242 |
| MS.gene46919.t1 | MTR_2g088700 | 42.308 | 286 | 161 | 2 | 1 | 285 | 1 | 283 | 2.83e-73 | 228 |
| MS.gene46919.t1 | MTR_5g020670 | 40.000 | 285 | 159 | 4 | 1 | 283 | 1 | 275 | 2.61e-62 | 199 |
| MS.gene46919.t1 | MTR_8g073900 | 31.361 | 169 | 92 | 3 | 1 | 168 | 1 | 146 | 4.15e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46919.t1 | AT3G11820 | 72.587 | 259 | 71 | 0 | 27 | 285 | 30 | 288 | 4.99e-141 | 402 |
| MS.gene46919.t1 | AT3G11820 | 73.152 | 257 | 69 | 0 | 29 | 285 | 1 | 257 | 9.86e-141 | 400 |
| MS.gene46919.t1 | AT1G61290 | 55.814 | 301 | 125 | 1 | 1 | 301 | 1 | 293 | 3.07e-126 | 362 |
| MS.gene46919.t1 | AT1G61290 | 55.814 | 301 | 125 | 1 | 1 | 301 | 1 | 293 | 3.07e-126 | 362 |
| MS.gene46919.t1 | AT1G11250 | 57.491 | 287 | 109 | 1 | 1 | 287 | 1 | 274 | 2.70e-122 | 352 |
| MS.gene46919.t1 | AT3G52400 | 62.199 | 291 | 104 | 3 | 1 | 287 | 1 | 289 | 2.71e-120 | 349 |
| MS.gene46919.t1 | AT4G03330 | 53.268 | 306 | 134 | 2 | 1 | 304 | 1 | 299 | 2.41e-111 | 325 |
| MS.gene46919.t1 | AT3G03800 | 44.948 | 287 | 148 | 4 | 1 | 285 | 1 | 279 | 1.72e-79 | 244 |
| MS.gene46919.t1 | AT3G03800 | 44.948 | 287 | 148 | 4 | 1 | 285 | 1 | 279 | 1.72e-79 | 244 |
| MS.gene46919.t1 | AT1G08560 | 42.321 | 293 | 154 | 4 | 1 | 285 | 1 | 286 | 1.91e-77 | 239 |
| MS.gene46919.t1 | AT5G08080 | 46.316 | 285 | 146 | 2 | 1 | 285 | 1 | 278 | 1.21e-72 | 226 |
| MS.gene46919.t1 | AT5G08080 | 46.316 | 285 | 146 | 2 | 1 | 285 | 1 | 278 | 1.21e-72 | 226 |
| MS.gene46919.t1 | AT5G08080 | 44.595 | 296 | 146 | 4 | 1 | 285 | 1 | 289 | 1.00e-70 | 222 |
| MS.gene46919.t1 | AT2G18260 | 35.606 | 264 | 163 | 2 | 40 | 303 | 46 | 302 | 2.30e-57 | 187 |
| MS.gene46919.t1 | AT2G18260 | 35.606 | 264 | 163 | 2 | 40 | 303 | 46 | 302 | 2.30e-57 | 187 |
| MS.gene46919.t1 | AT5G08080 | 42.995 | 207 | 111 | 2 | 1 | 207 | 1 | 200 | 3.34e-38 | 135 |
| MS.gene46919.t1 | AT5G08080 | 42.995 | 207 | 111 | 2 | 1 | 207 | 1 | 200 | 3.34e-38 | 135 |
Find 74 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCTCTCTTGAATTTCT+TGG | 0.088352 | 1.1:+43921645 | None:intergenic |
| GGAGCTTCACCAAGTGTTTA+TGG | 0.187321 | 1.1:-43921591 | MS.gene46919:CDS |
| AGCCACGTCAGCATCCATTT+TGG | 0.265957 | 1.1:+43922857 | None:intergenic |
| TGTTTGCTCTTCCTTGTTGC+TGG | 0.276634 | 1.1:+43921681 | None:intergenic |
| CAGAGGATATTTGTTGTCTA+AGG | 0.290767 | 1.1:+43922658 | None:intergenic |
| TCCACTTTCTGCTATTCATT+TGG | 0.309384 | 1.1:+43921450 | None:intergenic |
| GTTTATGGACATGTCTGTTT+TGG | 0.324253 | 1.1:-43921576 | MS.gene46919:CDS |
| TCCTCTCATGGGAGACTCTA+AGG | 0.337274 | 1.1:+43922922 | None:intergenic |
| GAAGGATATTCGCTCCAAAA+TGG | 0.357939 | 1.1:-43922871 | MS.gene46919:CDS |
| ACACCGGTTTGTGCGGTATT+CGG | 0.365266 | 1.1:+43923020 | None:intergenic |
| AGTAGGAGTTTGCCTGGTGC+TGG | 0.388193 | 1.1:-43922768 | MS.gene46919:CDS |
| GAGTTTGCCTGGTGCTGGAC+CGG | 0.392987 | 1.1:-43922763 | MS.gene46919:CDS |
| GAAGGGTCTTGCTCCTCTCA+TGG | 0.411456 | 1.1:+43922910 | None:intergenic |
| TCAATCACAAGGTGAACAAT+TGG | 0.420883 | 1.1:-43921552 | MS.gene46919:CDS |
| CAAACTCCTACTAGCCTCAT+TGG | 0.425618 | 1.1:+43922779 | None:intergenic |
| TGCTGGACCGGGTTCATCCT+CGG | 0.426717 | 1.1:-43922751 | MS.gene46919:CDS |
| AAGATGAATGATTTATTCTC+CGG | 0.470296 | 1.1:-43923116 | MS.gene46919:CDS |
| ATCACATGGTGATGGTTGTC+CGG | 0.480288 | 1.1:+43923056 | None:intergenic |
| AGTTTGCCTGGTGCTGGACC+GGG | 0.485224 | 1.1:-43922762 | MS.gene46919:CDS |
| AGGTGTTAAAGAGGAGTTGA+AGG | 0.487492 | 1.1:-43922967 | MS.gene46919:CDS |
| AAGGGTCTTGCTCCTCTCAT+GGG | 0.499489 | 1.1:+43922911 | None:intergenic |
| TTTCTCTCGCTTCCGCAACT+CGG | 0.503806 | 1.1:-43923090 | MS.gene46919:CDS |
| GATGAACCCGGTCCAGCACC+AGG | 0.504600 | 1.1:+43922756 | None:intergenic |
| TCCTACTAGCCTCATTGGAC+CGG | 0.514248 | 1.1:+43922784 | None:intergenic |
| CGTGCTAATTCGTATGTAAG+AGG | 0.516664 | 1.1:-43921506 | MS.gene46919:CDS |
| CTCCAAAATGGATGCTGACG+TGG | 0.519276 | 1.1:-43922859 | MS.gene46919:CDS |
| GAGGCTAGTAGGAGTTTGCC+TGG | 0.520730 | 1.1:-43922774 | MS.gene46919:CDS |
| TCACCGAATACCGCACAAAC+CGG | 0.521309 | 1.1:-43923023 | MS.gene46919:CDS |
| TCCTAGCAACATGCAACTGT+TGG | 0.522312 | 1.1:+43921477 | None:intergenic |
| ACCGGTCCAATGAGGCTAGT+AGG | 0.527254 | 1.1:-43922785 | MS.gene46919:CDS |
| TACAGTTTCTCTATATTCAG+AGG | 0.527444 | 1.1:+43922641 | None:intergenic |
| GATAATGAGGAGAATTATGA+TGG | 0.529658 | 1.1:+43921418 | None:intergenic |
| ACCGGTCAAGTGCCTCGAGC+CGG | 0.535814 | 1.1:+43922802 | None:intergenic |
| AGAGATAGAGAGAAATCTCA+TGG | 0.536636 | 1.1:-43921612 | MS.gene46919:CDS |
| CTATGATCAAGATGATAATG+AGG | 0.545348 | 1.1:+43921405 | None:intergenic |
| CTAATTCGTATGTAAGAGGT+GGG | 0.546081 | 1.1:-43921502 | MS.gene46919:CDS |
| TCCGGCTCGAGGCACTTGAC+CGG | 0.547953 | 1.1:-43922803 | MS.gene46919:CDS |
| AGAAGTCGAAGGTGTTAAAG+AGG | 0.548635 | 1.1:-43922976 | MS.gene46919:CDS |
| TTTGTCATCAGGATTCTCTC+CGG | 0.554404 | 1.1:+43922596 | None:intergenic |
| TATACATACCAGTGGAAATG+AGG | 0.558156 | 1.1:+43922562 | None:intergenic |
| AAGGTTGTTAAAGCTATCCA+TGG | 0.560718 | 1.1:+43922677 | None:intergenic |
| GTCCGGTCCGAGGATGAACC+CGG | 0.561320 | 1.1:+43922744 | None:intergenic |
| ACCAAATGAATAGCAGAAAG+TGG | 0.561512 | 1.1:-43921451 | MS.gene46919:CDS |
| GACCGGGTTCATCCTCGGAC+CGG | 0.567337 | 1.1:-43922746 | MS.gene46919:CDS |
| CGTAGATACTATACTGTCAC+CGG | 0.569775 | 1.1:-43922615 | MS.gene46919:CDS |
| ACAAGGAAGAGCAAACATCA+TGG | 0.570164 | 1.1:-43921675 | MS.gene46919:CDS |
| CAGACATGTCCATAAACACT+TGG | 0.571715 | 1.1:+43921582 | None:intergenic |
| GTTGACCTCCTCATTTCCAC+TGG | 0.573133 | 1.1:-43922570 | MS.gene46919:intron |
| GCTAATTCGTATGTAAGAGG+TGG | 0.577773 | 1.1:-43921503 | MS.gene46919:CDS |
| TCCAACAGTTGCATGTTGCT+AGG | 0.578150 | 1.1:-43921478 | MS.gene46919:CDS |
| CATCTGTGGTGAGTGGTTTG+AGG | 0.587043 | 1.1:-43922716 | MS.gene46919:CDS |
| GCGGAAGCGAGAGAAAGAGC+CGG | 0.591390 | 1.1:+43923097 | None:intergenic |
| TCACAGCGCAAAAGCTGTGA+AGG | 0.593476 | 1.1:-43922889 | MS.gene46919:CDS |
| TCACCACAGATGTTCTAGTC+CGG | 0.594304 | 1.1:+43922727 | None:intergenic |
| AAGCTAAACTTGTTAAACTC+CGG | 0.596720 | 1.1:-43922821 | MS.gene46919:CDS |
| GCCTTAGAGTCTCCCATGAG+AGG | 0.597298 | 1.1:-43922923 | MS.gene46919:CDS |
| GAGATGAACACCGGTTTGTG+CGG | 0.601265 | 1.1:+43923013 | None:intergenic |
| GTGATGACATTTCGATCACA+TGG | 0.608598 | 1.1:+43923042 | None:intergenic |
| GCGAAACTTGATCCGAGTTG+CGG | 0.618364 | 1.1:+43923078 | None:intergenic |
| ACATTTCGATCACATGGTGA+TGG | 0.618806 | 1.1:+43923048 | None:intergenic |
| CAACTCGGATCAAGTTTCGC+CGG | 0.628630 | 1.1:-43923075 | MS.gene46919:CDS |
| GAATTTGTCGAGATGAACAC+CGG | 0.632865 | 1.1:+43923004 | None:intergenic |
| AGTGGAAATGAGGAGGTCAA+CGG | 0.635845 | 1.1:+43922572 | None:intergenic |
| AAATTCTTCGAAGAAGTCGA+AGG | 0.646226 | 1.1:-43922987 | MS.gene46919:CDS |
| ACGAATTAGCACGTGCCACG+TGG | 0.646541 | 1.1:+43921516 | None:intergenic |
| GGCACTTGACCGGTCCAATG+AGG | 0.650152 | 1.1:-43922793 | MS.gene46919:CDS |
| CAATCCAAGAAATTCAAGAG+AGG | 0.658855 | 1.1:-43921649 | MS.gene46919:CDS |
| ACTTGTTAAACTCCGGCTCG+AGG | 0.660615 | 1.1:-43922814 | MS.gene46919:CDS |
| ACTAGAACATCTGTGGTGAG+TGG | 0.667098 | 1.1:-43922723 | MS.gene46919:CDS |
| ACATACCAGTGGAAATGAGG+AGG | 0.671780 | 1.1:+43922565 | None:intergenic |
| AGATGTTCTAGTCCGGTCCG+AGG | 0.675472 | 1.1:+43922734 | None:intergenic |
| GGACCGGACTAGAACATCTG+TGG | 0.682428 | 1.1:-43922730 | MS.gene46919:CDS |
| TAATTCGTATGTAAGAGGTG+GGG | 0.706870 | 1.1:-43921501 | MS.gene46919:CDS |
| GGATAATATTGAAAGCCACG+TGG | 0.768363 | 1.1:-43921531 | MS.gene46919:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACATATATAAGTATAT+TGG | + | chr1.1:43922595-43922614 | None:intergenic | 10.0% |
| !! | TTAAATTTCATAAAGATTTA+TGG | + | chr1.1:43922145-43922164 | None:intergenic | 10.0% |
| !! | AATAAAAAGAAACTTAAGTA+TGG | + | chr1.1:43922563-43922582 | None:intergenic | 15.0% |
| !!! | ATACATTTTAATAATTCATG+TGG | - | chr1.1:43922023-43922042 | MS.gene46919:intron | 15.0% |
| !!! | TACTTGATTCATTTATTTTT+AGG | + | chr1.1:43922521-43922540 | None:intergenic | 15.0% |
| !!! | TGTAGATTAATCTATTTTTA+AGG | - | chr1.1:43922106-43922125 | MS.gene46919:intron | 15.0% |
| !!! | AATGGTTTTAGATTCAAATT+CGG | + | chr1.1:43922450-43922469 | None:intergenic | 20.0% |
| !!! | ATCTTAGTTAATTTTCTTTC+CGG | - | chr1.1:43922302-43922321 | MS.gene46919:intron | 20.0% |
| !!! | ATTTTAATAATTCATGTGGA+AGG | - | chr1.1:43922027-43922046 | MS.gene46919:intron | 20.0% |
| !!! | ATTTTTATTTCAGAATCGAA+AGG | + | chr1.1:43922214-43922233 | None:intergenic | 20.0% |
| !!! | TTGAAGTGAAAGTTTTTAAT+AGG | - | chr1.1:43922664-43922683 | MS.gene46919:CDS | 20.0% |
| !!! | TTTTTATTTCAGAATCGAAA+GGG | + | chr1.1:43922213-43922232 | None:intergenic | 20.0% |
| ! | AAAAAAGAAACCATATACTC+TGG | + | chr1.1:43922628-43922647 | None:intergenic | 25.0% |
| ! | AACTTACACATACAACTAAA+TGG | + | chr1.1:43922468-43922487 | None:intergenic | 25.0% |
| ! | TGTATAAAATCCAGAGTATA+TGG | - | chr1.1:43922615-43922634 | MS.gene46919:CDS | 25.0% |
| !! | ACATCTTTTTAATGTACCAT+AGG | - | chr1.1:43922758-43922777 | MS.gene46919:CDS | 25.0% |
| !! | GTGATAATGTTGATATTGTT+AGG | - | chr1.1:43922410-43922429 | MS.gene46919:intron | 25.0% |
| !! | TGAAAGTTTTTAATAGGAGT+TGG | - | chr1.1:43922670-43922689 | MS.gene46919:CDS | 25.0% |
| AAAAACCCAAAGTTGTATGA+AGG | + | chr1.1:43922278-43922297 | None:intergenic | 30.0% | |
| AAATGTTTCACTTTCACCTA+TGG | + | chr1.1:43922777-43922796 | None:intergenic | 30.0% | |
| ATGTACCTTCATACAACTTT+GGG | - | chr1.1:43922270-43922289 | MS.gene46919:intron | 30.0% | |
| GATAATGAGGAGAATTATGA+TGG | + | chr1.1:43923077-43923096 | None:intergenic | 30.0% | |
| TAATGTTGATATTGTTAGGC+TGG | - | chr1.1:43922414-43922433 | MS.gene46919:intron | 30.0% | |
| TACAGTTTCTCTATATTCAG+AGG | + | chr1.1:43921854-43921873 | None:intergenic | 30.0% | |
| TCAAACAGAGTAATTTGATC+CGG | + | chr1.1:43922324-43922343 | None:intergenic | 30.0% | |
| TGATGATATATACATACCAG+TGG | + | chr1.1:43921941-43921960 | None:intergenic | 30.0% | |
| TTAGATTCAAATTCGGTTGA+AGG | + | chr1.1:43922443-43922462 | None:intergenic | 30.0% | |
| TTGTATGTGTAAGTTTCAGA+TGG | - | chr1.1:43922473-43922492 | MS.gene46919:intron | 30.0% | |
| ! | CTATGATCAAGATGATAATG+AGG | + | chr1.1:43923090-43923109 | None:intergenic | 30.0% |
| !! | AAGCTAAACTTGTTAAACTC+CGG | - | chr1.1:43921671-43921690 | MS.gene46919:CDS | 30.0% |
| AAATTCTTCGAAGAAGTCGA+AGG | - | chr1.1:43921505-43921524 | MS.gene46919:CDS | 35.0% | |
| AAGGTTGTTAAAGCTATCCA+TGG | + | chr1.1:43921818-43921837 | None:intergenic | 35.0% | |
| ACCAAATGAATAGCAGAAAG+TGG | - | chr1.1:43923041-43923060 | MS.gene46919:CDS | 35.0% | |
| AGAGATAGAGAGAAATCTCA+TGG | - | chr1.1:43922880-43922899 | MS.gene46919:CDS | 35.0% | |
| ATCACTTGAGCTGAATCTTA+TGG | + | chr1.1:43922395-43922414 | None:intergenic | 35.0% | |
| CAATCCAAGAAATTCAAGAG+AGG | - | chr1.1:43922843-43922862 | MS.gene46919:CDS | 35.0% | |
| CATGTACCTTCATACAACTT+TGG | - | chr1.1:43922269-43922288 | MS.gene46919:intron | 35.0% | |
| CTAATTCGTATGTAAGAGGT+GGG | - | chr1.1:43922990-43923009 | MS.gene46919:CDS | 35.0% | |
| GAAAAAGCTTAAGGATTCCA+TGG | - | chr1.1:43921798-43921817 | MS.gene46919:intron | 35.0% | |
| TAATTCGTATGTAAGAGGTG+GGG | - | chr1.1:43922991-43923010 | MS.gene46919:CDS | 35.0% | |
| TATACATACCAGTGGAAATG+AGG | + | chr1.1:43921933-43921952 | None:intergenic | 35.0% | |
| TCAATCACAAGGTGAACAAT+TGG | - | chr1.1:43922940-43922959 | MS.gene46919:CDS | 35.0% | |
| TCCACTTTCTGCTATTCATT+TGG | + | chr1.1:43923045-43923064 | None:intergenic | 35.0% | |
| TGAAAAGGAAAGAGAAGAGA+GGG | - | chr1.1:43922054-43922073 | MS.gene46919:intron | 35.0% | |
| TGGTTTGAGGAAAAAGCTTA+AGG | - | chr1.1:43921789-43921808 | MS.gene46919:intron | 35.0% | |
| TTGAAAAGGAAAGAGAAGAG+AGG | - | chr1.1:43922053-43922072 | MS.gene46919:intron | 35.0% | |
| ! | CAAAGTTGTATGAAGGTACA+TGG | + | chr1.1:43922271-43922290 | None:intergenic | 35.0% |
| ! | GTTTATGGACATGTCTGTTT+TGG | - | chr1.1:43922916-43922935 | MS.gene46919:CDS | 35.0% |
| !! | CAGAGGATATTTGTTGTCTA+AGG | + | chr1.1:43921837-43921856 | None:intergenic | 35.0% |
| !! | CATGTGGAAGGATTTTGAAA+AGG | - | chr1.1:43922039-43922058 | MS.gene46919:intron | 35.0% |
| !! | TGAAGGTACATGGAGAATTT+TGG | + | chr1.1:43922261-43922280 | None:intergenic | 35.0% |
| !!! | TCTGTTTTGGTTCAATCACA+AGG | - | chr1.1:43922929-43922948 | MS.gene46919:CDS | 35.0% |
| !!! | TTTTAGGTTCGTAAACGAAG+TGG | + | chr1.1:43922505-43922524 | None:intergenic | 35.0% |
| ACAAGGAAGAGCAAACATCA+TGG | - | chr1.1:43922817-43922836 | MS.gene46919:CDS | 40.0% | |
| ACATTTCGATCACATGGTGA+TGG | + | chr1.1:43921447-43921466 | None:intergenic | 40.0% | |
| AGGTGTTAAAGAGGAGTTGA+AGG | - | chr1.1:43921525-43921544 | MS.gene46919:CDS | 40.0% | |
| CAAAAAGCAATCCAGCAACA+AGG | - | chr1.1:43922800-43922819 | MS.gene46919:CDS | 40.0% | |
| CAGACATGTCCATAAACACT+TGG | + | chr1.1:43922913-43922932 | None:intergenic | 40.0% | |
| CATGCCTCTCTTGAATTTCT+TGG | + | chr1.1:43922850-43922869 | None:intergenic | 40.0% | |
| CGTAGATACTATACTGTCAC+CGG | - | chr1.1:43921877-43921896 | MS.gene46919:intron | 40.0% | |
| CGTGCTAATTCGTATGTAAG+AGG | - | chr1.1:43922986-43923005 | MS.gene46919:CDS | 40.0% | |
| GAAGGATATTCGCTCCAAAA+TGG | - | chr1.1:43921621-43921640 | MS.gene46919:CDS | 40.0% | |
| GAATTTGTCGAGATGAACAC+CGG | + | chr1.1:43921491-43921510 | None:intergenic | 40.0% | |
| GCTAATTCGTATGTAAGAGG+TGG | - | chr1.1:43922989-43923008 | MS.gene46919:CDS | 40.0% | |
| GGATAATATTGAAAGCCACG+TGG | - | chr1.1:43922961-43922980 | MS.gene46919:CDS | 40.0% | |
| GTGATGACATTTCGATCACA+TGG | + | chr1.1:43921453-43921472 | None:intergenic | 40.0% | |
| TTTGTCATCAGGATTCTCTC+CGG | + | chr1.1:43921899-43921918 | None:intergenic | 40.0% | |
| ! | AGGTACATGGAGAATTTTGG+AGG | + | chr1.1:43922258-43922277 | None:intergenic | 40.0% |
| !! | AGAAGTCGAAGGTGTTAAAG+AGG | - | chr1.1:43921516-43921535 | MS.gene46919:CDS | 40.0% |
| ACATACCAGTGGAAATGAGG+AGG | + | chr1.1:43921930-43921949 | None:intergenic | 45.0% | |
| ACTAGAACATCTGTGGTGAG+TGG | - | chr1.1:43921769-43921788 | MS.gene46919:intron | 45.0% | |
| AGTGGAAATGAGGAGGTCAA+CGG | + | chr1.1:43921923-43921942 | None:intergenic | 45.0% | |
| GGAGCTTCACCAAGTGTTTA+TGG | - | chr1.1:43922901-43922920 | MS.gene46919:CDS | 45.0% | |
| TCACCACAGATGTTCTAGTC+CGG | + | chr1.1:43921768-43921787 | None:intergenic | 45.0% | |
| TCCAACAGTTGCATGTTGCT+AGG | - | chr1.1:43923014-43923033 | MS.gene46919:CDS | 45.0% | |
| TCCTAGCAACATGCAACTGT+TGG | + | chr1.1:43923018-43923037 | None:intergenic | 45.0% | |
| TGTTTGCTCTTCCTTGTTGC+TGG | + | chr1.1:43922814-43922833 | None:intergenic | 45.0% | |
| ! | CAAACTCCTACTAGCCTCAT+TGG | + | chr1.1:43921716-43921735 | None:intergenic | 45.0% |
| !! | AGGTCAACGGTTTTGTCATC+AGG | + | chr1.1:43921910-43921929 | None:intergenic | 45.0% |
| !! | ATCACATGGTGATGGTTGTC+CGG | + | chr1.1:43921439-43921458 | None:intergenic | 45.0% |
| AAGGGTCTTGCTCCTCTCAT+GGG | + | chr1.1:43921584-43921603 | None:intergenic | 50.0% | |
| CAACTCGGATCAAGTTTCGC+CGG | - | chr1.1:43921417-43921436 | MS.gene46919:CDS | 50.0% | |
| CATCTGTGGTGAGTGGTTTG+AGG | - | chr1.1:43921776-43921795 | MS.gene46919:intron | 50.0% | |
| CTCCAAAATGGATGCTGACG+TGG | - | chr1.1:43921633-43921652 | MS.gene46919:CDS | 50.0% | |
| GCGAAACTTGATCCGAGTTG+CGG | + | chr1.1:43921417-43921436 | None:intergenic | 50.0% | |
| GTTGACCTCCTCATTTCCAC+TGG | - | chr1.1:43921922-43921941 | MS.gene46919:intron | 50.0% | |
| TCACAGCGCAAAAGCTGTGA+AGG | - | chr1.1:43921603-43921622 | MS.gene46919:CDS | 50.0% | |
| TCACCGAATACCGCACAAAC+CGG | - | chr1.1:43921469-43921488 | MS.gene46919:CDS | 50.0% | |
| TCCTCTCATGGGAGACTCTA+AGG | + | chr1.1:43921573-43921592 | None:intergenic | 50.0% | |
| TTTCTCTCGCTTCCGCAACT+CGG | - | chr1.1:43921402-43921421 | MS.gene46919:CDS | 50.0% | |
| ! | ACTTGTTAAACTCCGGCTCG+AGG | - | chr1.1:43921678-43921697 | MS.gene46919:CDS | 50.0% |
| ! | AGCCACGTCAGCATCCATTT+TGG | + | chr1.1:43921638-43921657 | None:intergenic | 50.0% |
| ! | CACAGCTTTTGCGCTGTGAA+GGG | + | chr1.1:43921602-43921621 | None:intergenic | 50.0% |
| ! | TCACAGCTTTTGCGCTGTGA+AGG | + | chr1.1:43921603-43921622 | None:intergenic | 50.0% |
| ! | TCCTACTAGCCTCATTGGAC+CGG | + | chr1.1:43921711-43921730 | None:intergenic | 50.0% |
| !! | ACACCGGTTTGTGCGGTATT+CGG | + | chr1.1:43921475-43921494 | None:intergenic | 50.0% |
| !! | GAGATGAACACCGGTTTGTG+CGG | + | chr1.1:43921482-43921501 | None:intergenic | 50.0% |
| ACCGGTCCAATGAGGCTAGT+AGG | - | chr1.1:43921707-43921726 | MS.gene46919:CDS | 55.0% | |
| ACGAATTAGCACGTGCCACG+TGG | + | chr1.1:43922979-43922998 | None:intergenic | 55.0% | |
| AGATGTTCTAGTCCGGTCCG+AGG | + | chr1.1:43921761-43921780 | None:intergenic | 55.0% | |
| AGTAGGAGTTTGCCTGGTGC+TGG | - | chr1.1:43921724-43921743 | MS.gene46919:intron | 55.0% | |
| GAAGGGTCTTGCTCCTCTCA+TGG | + | chr1.1:43921585-43921604 | None:intergenic | 55.0% | |
| GAGGCTAGTAGGAGTTTGCC+TGG | - | chr1.1:43921718-43921737 | MS.gene46919:intron | 55.0% | |
| GCCTTAGAGTCTCCCATGAG+AGG | - | chr1.1:43921569-43921588 | MS.gene46919:CDS | 55.0% | |
| ! | GGACCGGACTAGAACATCTG+TGG | - | chr1.1:43921762-43921781 | MS.gene46919:intron | 55.0% |
| GCGGAAGCGAGAGAAAGAGC+CGG | + | chr1.1:43921398-43921417 | None:intergenic | 60.0% | |
| GGCACTTGACCGGTCCAATG+AGG | - | chr1.1:43921699-43921718 | MS.gene46919:CDS | 60.0% | |
| TGCTGGACCGGGTTCATCCT+CGG | - | chr1.1:43921741-43921760 | MS.gene46919:intron | 60.0% | |
| ! | AGTTTGCCTGGTGCTGGACC+GGG | - | chr1.1:43921730-43921749 | MS.gene46919:intron | 60.0% |
| ! | GAGTTTGCCTGGTGCTGGAC+CGG | - | chr1.1:43921729-43921748 | MS.gene46919:intron | 60.0% |
| ACCGGTCAAGTGCCTCGAGC+CGG | + | chr1.1:43921693-43921712 | None:intergenic | 65.0% | |
| GACCGGGTTCATCCTCGGAC+CGG | - | chr1.1:43921746-43921765 | MS.gene46919:intron | 65.0% | |
| GATGAACCCGGTCCAGCACC+AGG | + | chr1.1:43921739-43921758 | None:intergenic | 65.0% | |
| GTCCGGTCCGAGGATGAACC+CGG | + | chr1.1:43921751-43921770 | None:intergenic | 65.0% | |
| ! | TCCGGCTCGAGGCACTTGAC+CGG | - | chr1.1:43921689-43921708 | MS.gene46919:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 43921379 | 43923135 | 43921379 | ID=MS.gene46919 |
| chr1.1 | mRNA | 43921379 | 43923135 | 43921379 | ID=MS.gene46919.t1;Parent=MS.gene46919 |
| chr1.1 | exon | 43922571 | 43923135 | 43922571 | ID=MS.gene46919.t1.exon1;Parent=MS.gene46919.t1 |
| chr1.1 | CDS | 43922571 | 43923135 | 43922571 | ID=cds.MS.gene46919.t1;Parent=MS.gene46919.t1 |
| chr1.1 | exon | 43921379 | 43921734 | 43921379 | ID=MS.gene46919.t1.exon2;Parent=MS.gene46919.t1 |
| chr1.1 | CDS | 43921379 | 43921734 | 43921379 | ID=cds.MS.gene46919.t1;Parent=MS.gene46919.t1 |
| Gene Sequence |
| Protein sequence |
