AlfalfaGEDB | MS.gene47959

M. sativa cultivar XinJiangDaYe / MS.gene47959

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47959.t1	XP_013446712.1	98.1	104	2	0	1	104	40	143	2.90E-47	197.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47959.t1	A0A072TT93	98.1	104	2	0	1	104	40	143	2.1e-47	197.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049873	MS.gene47959	0.800605	1.33E-48	-1.69E-46
MS.gene050303	MS.gene47959	0.813419	2.58E-51	-1.69E-46
MS.gene052376	MS.gene47959	0.822671	2.09E-53	-1.69E-46
MS.gene055808	MS.gene47959	0.82786	1.24E-54	-1.69E-46
MS.gene056091	MS.gene47959	0.835229	1.90E-56	-1.69E-46
MS.gene056403	MS.gene47959	0.82684	2.18E-54	-1.69E-46
MS.gene056605	MS.gene47959	0.825797	3.85E-54	-1.69E-46
MS.gene056631	MS.gene47959	0.803798	2.93E-49	-1.69E-46
MS.gene058084	MS.gene47959	0.803794	2.94E-49	-1.69E-46
MS.gene058908	MS.gene47959	0.986014	2.16E-165	-1.69E-46
MS.gene058911	MS.gene47959	0.988285	2.02E-173	-1.69E-46
MS.gene05954	MS.gene47959	0.807923	3.99E-50	-1.69E-46
MS.gene059935	MS.gene47959	0.800393	1.47E-48	-1.69E-46
MS.gene06001	MS.gene47959	0.817535	3.14E-52	-1.69E-46
MS.gene060429	MS.gene47959	0.816855	4.46E-52	-1.69E-46
MS.gene060586	MS.gene47959	0.810027	1.41E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47959.t1	MTR_8g089655	98.077	104	2	0	1	104	43	146	1.53e-71	209
MS.gene47959.t1	MTR_8g089655	98.077	104	2	0	1	104	40	143	1.89e-71	209

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47959.t1	AT1G16790	55.670	97	40	2	1	95	39	134	2.72e-33	113

Find 26 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGCAATTGGGGTTGTTTC+TGG	0.158557	4.1:+11014255	MS.gene47959:CDS
GTTTCTGGTGCTGCTCTTAA+TGG	0.209111	4.1:+11014270	MS.gene47959:CDS
TTCATCTGGTAAAGGTAAAA+AGG	0.279247	4.1:+11014131	MS.gene47959:CDS
TTTCACCTATTGCTCAGATT+TGG	0.309135	4.1:+11014319	MS.gene47959:CDS
GATTTACAGAAGGCGTTGTT+TGG	0.358146	4.1:+11014102	MS.gene47959:CDS
GGTGCTGCTCTTAATGGAAT+TGG	0.362930	4.1:+11014276	MS.gene47959:CDS
TTGTTGAGACGTTTGCAATT+GGG	0.377010	4.1:+11014244	MS.gene47959:CDS
TTTGTTGAGACGTTTGCAAT+TGG	0.400517	4.1:+11014243	MS.gene47959:CDS
GAATTCCAAATCTGAGCAAT+AGG	0.408372	4.1:-11014324	None:intergenic
TTGTTTGGAGTAATTTCATC+TGG	0.412151	4.1:+11014117	MS.gene47959:CDS
AAATGAATCTTCTAGAAAGA+TGG	0.419369	4.1:+11014164	MS.gene47959:CDS
TCATTGAGGGGTAGATTTAG+TGG	0.436309	4.1:-11014358	None:intergenic
ATGAAGCTTGATACTAAGCC+TGG	0.457946	4.1:+11014219	MS.gene47959:CDS
GGAGTAATTTCATCTGGTAA+AGG	0.473380	4.1:+11014123	MS.gene47959:CDS
TGTTGAGACGTTTGCAATTG+GGG	0.507433	4.1:+11014245	MS.gene47959:CDS
ATCTTCTAGAAAGATGGATT+CGG	0.522036	4.1:+11014170	MS.gene47959:CDS
AGGGGTAGATTTAGTGGCTG+AGG	0.534389	4.1:-11014352	None:intergenic
AGGGTGCAAAATGTCATTGA+GGG	0.536281	4.1:-11014371	None:intergenic
TTCACAAGAAGCCTCATTGA+AGG	0.549868	4.1:+11014071	MS.gene47959:CDS
AAGGGTGCAAAATGTCATTG+AGG	0.553529	4.1:-11014372	None:intergenic
GCAAACGTCTCAACAAATCC+AGG	0.561055	4.1:-11014237	None:intergenic
AGCCTCATTGAAGGTCATAG+AGG	0.621483	4.1:+11014080	MS.gene47959:CDS
GGTCATAGAGGATTTACAGA+AGG	0.636264	4.1:+11014092	MS.gene47959:CDS
ATCCTCTATGACCTTCAATG+AGG	0.666837	4.1:-11014082	None:intergenic
GCAATAGGTGAAAGAATGTG+AGG	0.689368	4.1:-11014309	None:intergenic
GGGTGCAAAATGTCATTGAG+GGG	0.694593	4.1:-11014370	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATGAATCTTCTAGAAAGA+TGG	+	chr4.1:11014164-11014183	MS.gene47959:CDS	25.0%
	TTCATCTGGTAAAGGTAAAA+AGG	+	chr4.1:11014131-11014150	MS.gene47959:CDS	30.0%
!	ATCTTCTAGAAAGATGGATT+CGG	+	chr4.1:11014170-11014189	MS.gene47959:CDS	30.0%
!	TTGTTTGGAGTAATTTCATC+TGG	+	chr4.1:11014117-11014136	MS.gene47959:CDS	30.0%
	CTGGTAAAGGTAAAAAGGAT+AGG	+	chr4.1:11014136-11014155	MS.gene47959:CDS	35.0%
	GAATTCCAAATCTGAGCAAT+AGG	-	chr4.1:11014327-11014346	None:intergenic	35.0%
	GGAGTAATTTCATCTGGTAA+AGG	+	chr4.1:11014123-11014142	MS.gene47959:CDS	35.0%
	TTGTTGAGACGTTTGCAATT+GGG	+	chr4.1:11014244-11014263	MS.gene47959:CDS	35.0%
	TTTCACCTATTGCTCAGATT+TGG	+	chr4.1:11014319-11014338	MS.gene47959:CDS	35.0%
	TTTGTTGAGACGTTTGCAAT+TGG	+	chr4.1:11014243-11014262	MS.gene47959:CDS	35.0%
	ATCCTCTATGACCTTCAATG+AGG	-	chr4.1:11014085-11014104	None:intergenic	40.0%
	ATGAAGCTTGATACTAAGCC+TGG	+	chr4.1:11014219-11014238	MS.gene47959:CDS	40.0%
	GCAATAGGTGAAAGAATGTG+AGG	-	chr4.1:11014312-11014331	None:intergenic	40.0%
	GGTCATAGAGGATTTACAGA+AGG	+	chr4.1:11014092-11014111	MS.gene47959:CDS	40.0%
	TCATTGAGGGGTAGATTTAG+TGG	-	chr4.1:11014361-11014380	None:intergenic	40.0%
	TGTTGAGACGTTTGCAATTG+GGG	+	chr4.1:11014245-11014264	MS.gene47959:CDS	40.0%
	TTCACAAGAAGCCTCATTGA+AGG	+	chr4.1:11014071-11014090	MS.gene47959:CDS	40.0%
!	TTTGCAATTGGGGTTGTTTC+TGG	+	chr4.1:11014255-11014274	MS.gene47959:CDS	40.0%
!!	GATTTACAGAAGGCGTTGTT+TGG	+	chr4.1:11014102-11014121	MS.gene47959:CDS	40.0%
	AGCCTCATTGAAGGTCATAG+AGG	+	chr4.1:11014080-11014099	MS.gene47959:CDS	45.0%
	GCAAACGTCTCAACAAATCC+AGG	-	chr4.1:11014240-11014259	None:intergenic	45.0%
!!	GGTGCTGCTCTTAATGGAAT+TGG	+	chr4.1:11014276-11014295	MS.gene47959:CDS	45.0%
!!	GTTTCTGGTGCTGCTCTTAA+TGG	+	chr4.1:11014270-11014289	MS.gene47959:CDS	45.0%
	AGGGGTAGATTTAGTGGCTG+AGG	-	chr4.1:11014355-11014374	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	11014066	11014380	11014066	ID=MS.gene47959
chr4.1	mRNA	11014066	11014380	11014066	ID=MS.gene47959.t1;Parent=MS.gene47959
chr4.1	exon	11014066	11014380	11014066	ID=MS.gene47959.t1.exon1;Parent=MS.gene47959.t1
chr4.1	CDS	11014066	11014380	11014066	ID=cds.MS.gene47959.t1;Parent=MS.gene47959.t1

Gene Sequence	>MS.gene47959 ATGGATTCACAAGAAGCCTCATTGAAGGTCATAGAGGATTTACAGAAGGCGTTGTTTGGAGTAATTTCATCTGGTAAAGGTAAAAAGGATAGGCTTATAAATGAATCTTCTAGAAAGATGGATTCGGTTAATCAAAGACTTGCTATACTTGATATGAAGCTTGATACTAAGCCTGGATTTGTTGAGACGTTTGCAATTGGGGTTGTTTCTGGTGCTGCTCTTAATGGAATTGGTGCTGTAATGCCTCACATTCTTTCACCTATTGCTCAGATTTGGAATTCTGTTACCTCAGCCACTAAATCTACCCCTCAATGA
Protein sequence	>MS.gene47959.t1 MDSQEASLKVIEDLQKALFGVISSGKGKKDRLINESSRKMDSVNQRLAILDMKLDTKPGFVETFAIGVVSGAALNGIGAVMPHILSPIAQIWNSVTSATKSTPQ