Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48150.t1 | KEH25858.1 | 96.1 | 383 | 12 | 1 | 1 | 383 | 1 | 380 | 2.70E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48150.t1 | A0A072U9Y9 | 96.1 | 383 | 12 | 1 | 1 | 383 | 1 | 380 | 1.9e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48150.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene48150 | 0.812656 | 3.80E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene48150 | 0.810403 | 1.17E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene48150 | 0.814618 | 1.41E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene48150 | 0.816705 | 4.82E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene48150 | 0.815261 | 1.01E-51 | -1.69E-46 |
| MS.gene050987 | MS.gene48150 | 0.823406 | 1.41E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene48150 | 0.874032 | 9.27E-68 | -1.69E-46 |
| MS.gene052309 | MS.gene48150 | -0.818716 | 1.70E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene48150 | -0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene48150 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene48150 | 0.820073 | 8.32E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene48150 | 0.818578 | 1.82E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene48150 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene48150 | 0.838597 | 2.62E-57 | -1.69E-46 |
| MS.gene060879 | MS.gene48150 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene48150 | -0.827457 | 1.55E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48150.t1 | MTR_6g035315 | 96.253 | 427 | 16 | 0 | 25 | 451 | 22 | 448 | 0.0 | 749 |
| MS.gene48150.t1 | MTR_1g098920 | 71.329 | 429 | 110 | 6 | 24 | 445 | 23 | 445 | 0.0 | 590 |
| MS.gene48150.t1 | MTR_2g098080 | 42.169 | 415 | 208 | 6 | 37 | 444 | 22 | 411 | 8.67e-92 | 285 |
| MS.gene48150.t1 | MTR_7g103390 | 49.590 | 244 | 102 | 6 | 11 | 248 | 1 | 229 | 1.59e-65 | 217 |
| MS.gene48150.t1 | MTR_1g061640 | 62.420 | 157 | 56 | 3 | 93 | 248 | 95 | 249 | 5.32e-58 | 199 |
| MS.gene48150.t1 | MTR_1g061640 | 49.333 | 75 | 38 | 0 | 371 | 445 | 406 | 480 | 5.13e-18 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48150.t1 | AT1G21200 | 61.926 | 457 | 146 | 10 | 1 | 446 | 1 | 440 | 5.29e-179 | 508 |
| MS.gene48150.t1 | AT1G21200 | 61.926 | 457 | 146 | 10 | 1 | 446 | 1 | 440 | 5.29e-179 | 508 |
| MS.gene48150.t1 | AT1G76870 | 52.273 | 440 | 142 | 16 | 17 | 447 | 3 | 383 | 1.71e-126 | 372 |
| MS.gene48150.t1 | AT1G76870 | 52.273 | 440 | 142 | 16 | 17 | 447 | 3 | 383 | 1.71e-126 | 372 |
| MS.gene48150.t1 | AT1G76870 | 52.273 | 440 | 142 | 16 | 17 | 447 | 3 | 383 | 1.71e-126 | 372 |
| MS.gene48150.t1 | AT3G10040 | 44.622 | 251 | 109 | 8 | 21 | 252 | 7 | 246 | 4.09e-46 | 165 |
Find 114 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGCAGTGTTGCAGAAAA+AGG | 0.201562 | 6.4:+8849088 | MS.gene48150:CDS |
| AGAAGGAAGTAGAGGGAAAA+AGG | 0.214962 | 6.4:+8848950 | MS.gene48150:CDS |
| AATGCAATCTATTACAATTA+TGG | 0.268261 | 6.4:-8849367 | None:intergenic |
| CATGAAGATGCTACTACTTT+TGG | 0.268448 | 6.4:+8849623 | MS.gene48150:CDS |
| GGTGATAGTCGAGGAATCTT+TGG | 0.290899 | 6.4:+8849557 | MS.gene48150:CDS |
| AATTCAACGATCTTAATAAA+AGG | 0.306147 | 6.4:+8849183 | MS.gene48150:CDS |
| ATAACGGCGGTGTCTTATAT+TGG | 0.308369 | 6.4:+8849023 | MS.gene48150:CDS |
| TATCATGATCATCTCTATTT+CGG | 0.312915 | 6.4:-8849433 | None:intergenic |
| ATCTTAATAAAAGGTATAAA+AGG | 0.318059 | 6.4:+8849192 | MS.gene48150:CDS |
| TGGAAATTCTTTAAATTGTC+AGG | 0.326876 | 6.4:+8849643 | MS.gene48150:CDS |
| GAAATCTATTTCCAAGGTTA+TGG | 0.330531 | 6.4:+8849118 | MS.gene48150:CDS |
| CAAAAGTAGTAGCATCTTCA+TGG | 0.344743 | 6.4:-8849622 | None:intergenic |
| CTGTCAAGTTGTTGAAAATC+CGG | 0.348018 | 6.4:+8849244 | MS.gene48150:CDS |
| GTGATAGTCGAGGAATCTTT+GGG | 0.360170 | 6.4:+8849558 | MS.gene48150:CDS |
| TGACGAGGATGATCATGATA+TGG | 0.392416 | 6.4:+8849490 | MS.gene48150:CDS |
| TTCCAAGGTTATGGCTGAAA+GGG | 0.411155 | 6.4:+8849127 | MS.gene48150:CDS |
| CGGCGGCACCAGCTTTAACT+AGG | 0.419109 | 6.4:+8849964 | MS.gene48150:CDS |
| GTCGATGAACGAGTTTAGTC+AGG | 0.421399 | 6.4:+8848860 | MS.gene48150:CDS |
| TTCAACGTCCCTATTGTAAG+AGG | 0.429215 | 6.4:-8848819 | None:intergenic |
| CAAGGTGATGGTGGTGGTGG+TGG | 0.436461 | 6.4:+8848663 | MS.gene48150:CDS |
| AGATGGAAATCAAGCTTTAC+CGG | 0.441260 | 6.4:+8849709 | MS.gene48150:CDS |
| GTTCAAGGTGATGGTGGTGG+TGG | 0.446247 | 6.4:+8848660 | MS.gene48150:CDS |
| TGCAAGGACCGCTGCAATGC+AGG | 0.447004 | 6.4:-8849401 | None:intergenic |
| GTGCTTTCTTCGATTAATGA+AGG | 0.476946 | 6.4:+8848792 | MS.gene48150:CDS |
| TAGTAGCATCTTCATGGCCT+TGG | 0.479201 | 6.4:-8849616 | None:intergenic |
| GGTAAAGCTTGATTTCCATC+TGG | 0.481200 | 6.4:-8849707 | None:intergenic |
| AACTCATCCGTGTCAAGGGC+CGG | 0.484357 | 6.4:+8848767 | MS.gene48150:CDS |
| ACAGATTCAGATTGAGATGA+TGG | 0.485981 | 6.4:+8849805 | MS.gene48150:CDS |
| TGTTGAAAATCCGGCTTTGT+TGG | 0.486943 | 6.4:+8849253 | MS.gene48150:CDS |
| TCTCAAGGAGGTATAGTTCA+AGG | 0.489422 | 6.4:+8848645 | MS.gene48150:CDS |
| CGCCTTGGCAGCGTGTGAAG+TGG | 0.492977 | 6.4:+8848976 | MS.gene48150:CDS |
| GGGAGTTCTGAAGGTGGTAG+TGG | 0.493151 | 6.4:+8849053 | MS.gene48150:CDS |
| CAGCTTGGTTACAGAAGCAA+TGG | 0.506444 | 6.4:+8849744 | MS.gene48150:CDS |
| AAAAGGCTTAACGATATGCT+TGG | 0.506945 | 6.4:+8849209 | MS.gene48150:CDS |
| CGATGAACTCGCATCGATCC+CGG | 0.508975 | 6.4:-8848708 | None:intergenic |
| CGCTGCAATGCAGGATCATG+CGG | 0.517016 | 6.4:-8849392 | None:intergenic |
| GTGTCTTATATTGGCGAGGA+CGG | 0.520156 | 6.4:+8849032 | MS.gene48150:CDS |
| ACCCCTTTCAGCCATAACCT+TGG | 0.524702 | 6.4:-8849129 | None:intergenic |
| TTTCCAAGGTTATGGCTGAA+AGG | 0.525735 | 6.4:+8849126 | MS.gene48150:CDS |
| CTGAAGGTGGTAGTGGTGGA+AGG | 0.527560 | 6.4:+8849060 | MS.gene48150:CDS |
| CATAAAAGTTCGTATCCTCA+TGG | 0.535597 | 6.4:+8849671 | MS.gene48150:CDS |
| CTCGTCATGATCATCATGAT+AGG | 0.537593 | 6.4:-8849474 | None:intergenic |
| GAGGAAGATGAGCCGGAGGA+AGG | 0.539815 | 6.4:+8848909 | MS.gene48150:CDS |
| AGCTTGGTTACAGAAGCAAT+GGG | 0.542768 | 6.4:+8849745 | MS.gene48150:CDS |
| GAGCCGGAGGAAGGTGGTGA+TGG | 0.542968 | 6.4:+8848918 | MS.gene48150:CDS |
| GTATCTTAACGAGAAAGAAA+AGG | 0.544487 | 6.4:+8849286 | MS.gene48150:CDS |
| GGCTTAACGATATGCTTGGA+AGG | 0.546544 | 6.4:+8849213 | MS.gene48150:CDS |
| GAACTGAAGCGAAAGGAGAT+CGG | 0.553087 | 6.4:+8849944 | MS.gene48150:CDS |
| CATCAAACTCATCCGTGTCA+AGG | 0.557158 | 6.4:+8848762 | MS.gene48150:CDS |
| TGTCTTATATTGGCGAGGAC+GGG | 0.557593 | 6.4:+8849033 | MS.gene48150:CDS |
| GGGGAGTGAGGAAGATGAGC+CGG | 0.557735 | 6.4:+8848902 | MS.gene48150:CDS |
| CGGAAAACATGAAAGCAGCT+TGG | 0.558783 | 6.4:+8849729 | MS.gene48150:CDS |
| ATCAAACTCATCCGTGTCAA+GGG | 0.560403 | 6.4:+8848763 | MS.gene48150:CDS |
| GACACGGATGAGTTTGATGT+TGG | 0.561258 | 6.4:-8848758 | None:intergenic |
| GGCGAGGACGGGAGTTCTGA+AGG | 0.563055 | 6.4:+8849044 | MS.gene48150:CDS |
| ATAGTTCAAGGTGATGGTGG+TGG | 0.564193 | 6.4:+8848657 | MS.gene48150:CDS |
| AGAGTTGGAGAAGTTCAAGC+TGG | 0.565535 | 6.4:+8849880 | MS.gene48150:CDS |
| TGATGTTGGTTCATCGTATG+CGG | 0.567222 | 6.4:-8848744 | None:intergenic |
| GGATGATCATGATATGGAAA+CGG | 0.567609 | 6.4:+8849496 | MS.gene48150:CDS |
| TAAGTGGAAATCTATTTCCA+AGG | 0.570877 | 6.4:+8849112 | MS.gene48150:CDS |
| GCTTGAACTTCTCCAACTCT+CGG | 0.574294 | 6.4:-8849877 | None:intergenic |
| GGTATAGTTCAAGGTGATGG+TGG | 0.576507 | 6.4:+8848654 | MS.gene48150:CDS |
| AGCACCGCCGGCCCTTGACA+CGG | 0.577678 | 6.4:-8848774 | None:intergenic |
| GCTTAACGATATGCTTGGAA+GGG | 0.580590 | 6.4:+8849214 | MS.gene48150:CDS |
| GGAGGTATAGTTCAAGGTGA+TGG | 0.582990 | 6.4:+8848651 | MS.gene48150:CDS |
| TGCTTTAGAACTGAAGCGAA+AGG | 0.583633 | 6.4:+8849937 | MS.gene48150:CDS |
| CGCATGATCCTGCATTGCAG+CGG | 0.584928 | 6.4:+8849393 | MS.gene48150:CDS |
| AAACAAACACTCGGGGAGTG+AGG | 0.585505 | 6.4:+8848890 | MS.gene48150:CDS |
| GTCCACTTCACACGCTGCCA+AGG | 0.587195 | 6.4:-8848978 | None:intergenic |
| TTAGCAAACCTAGTTAAAGC+TGG | 0.588173 | 6.4:-8849972 | None:intergenic |
| TGACCATCACCACCTTCCTC+CGG | 0.589498 | 6.4:-8848921 | None:intergenic |
| TCGATTACATCCAACAAAGC+CGG | 0.595586 | 6.4:-8849263 | None:intergenic |
| TTCGTATCCTCATGGACAGA+TGG | 0.597348 | 6.4:+8849679 | MS.gene48150:CDS |
| TCCAAGGTTATGGCTGAAAG+GGG | 0.597943 | 6.4:+8849128 | MS.gene48150:CDS |
| GGAGATAGAAACAAACACTC+GGG | 0.601048 | 6.4:+8848882 | MS.gene48150:CDS |
| CTTAACGATATGCTTGGAAG+GGG | 0.602105 | 6.4:+8849215 | MS.gene48150:CDS |
| GAGTGAGGAAGATGAGCCGG+AGG | 0.604600 | 6.4:+8848905 | MS.gene48150:CDS |
| GGACAGATGGTACAACCAGA+TGG | 0.605592 | 6.4:+8849692 | MS.gene48150:CDS |
| CATCATCAAGAAGGAAGTAG+AGG | 0.606503 | 6.4:+8848942 | MS.gene48150:CDS |
| AGTTCTGAAGGTGGTAGTGG+TGG | 0.609983 | 6.4:+8849056 | MS.gene48150:CDS |
| TCGATGCGAGTTCATCGTCA+AGG | 0.616549 | 6.4:+8848714 | MS.gene48150:CDS |
| AATTTATCCTCACATTGCTG+AGG | 0.616974 | 6.4:-8849164 | None:intergenic |
| GAAGATGAGCCGGAGGAAGG+TGG | 0.617091 | 6.4:+8848912 | MS.gene48150:CDS |
| GGTGATGGTCATCATCAAGA+AGG | 0.617927 | 6.4:+8848933 | MS.gene48150:CDS |
| ATTTCGGAGAGCTATTTGCA+AGG | 0.617973 | 6.4:-8849417 | None:intergenic |
| GAAGAGAACTACGCTTCCCA+TGG | 0.620396 | 6.4:+8849536 | MS.gene48150:CDS |
| TGTGAAGTGGACTGATAAGA+TGG | 0.627029 | 6.4:+8848989 | MS.gene48150:CDS |
| ATGATAACGATGATGTGAGA+AGG | 0.627318 | 6.4:+8849450 | MS.gene48150:CDS |
| ATCATCAAGAAGGAAGTAGA+GGG | 0.627850 | 6.4:+8848943 | MS.gene48150:CDS |
| GGGAGATAGAAACAAACACT+CGG | 0.632973 | 6.4:+8848881 | MS.gene48150:CDS |
| CGATGCGAGTTCATCGTCAA+GGG | 0.633456 | 6.4:+8848715 | MS.gene48150:CDS |
| TTAATCGAAGAAAGCACCGC+CGG | 0.638253 | 6.4:-8848786 | None:intergenic |
| ATGGAAGGGAATTTGTCTCA+AGG | 0.640788 | 6.4:+8848630 | MS.gene48150:CDS |
| TGTTGTTGAGAAGAAATGGA+AGG | 0.642321 | 6.4:+8848615 | None:intergenic |
| GCTTCCCATGGTGATAGTCG+AGG | 0.642635 | 6.4:+8849548 | MS.gene48150:CDS |
| GTTGTTGAGAAGAAATGGAA+GGG | 0.643736 | 6.4:+8848616 | None:intergenic |
| GATAGTCGAGGAATCTTTGG+GGG | 0.644442 | 6.4:+8849560 | MS.gene48150:CDS |
| GCAATGGGTTGAATCTCGCT+CGG | 0.646017 | 6.4:+8849760 | MS.gene48150:CDS |
| TCGATGAACGAGTTTAGTCA+GGG | 0.648981 | 6.4:+8848861 | MS.gene48150:CDS |
| TCATCCGTGTCAAGGGCCGG+CGG | 0.649182 | 6.4:+8848770 | MS.gene48150:CDS |
| GGCGGTGTCTTATATTGGCG+AGG | 0.657443 | 6.4:+8849028 | MS.gene48150:CDS |
| GATTCCTCGACTATCACCAT+GGG | 0.658101 | 6.4:-8849552 | None:intergenic |
| CTATCATGATGATCATGACG+AGG | 0.661777 | 6.4:+8849475 | MS.gene48150:CDS |
| AGATTCCTCGACTATCACCA+TGG | 0.673633 | 6.4:-8849553 | None:intergenic |
| GGTTGTACCATCTGTCCATG+AGG | 0.678583 | 6.4:-8849686 | None:intergenic |
| AAAAGACTAAGACAAGGCCA+AGG | 0.689910 | 6.4:+8849599 | MS.gene48150:CDS |
| TGATAGTCGAGGAATCTTTG+GGG | 0.690169 | 6.4:+8849559 | MS.gene48150:CDS |
| CTGAAGCGAAAGGAGATCGG+CGG | 0.699525 | 6.4:+8849947 | MS.gene48150:CDS |
| TGTTTCGCCTCAGCAATGTG+AGG | 0.699798 | 6.4:+8849157 | MS.gene48150:CDS |
| GAAGGGAATTTGTCTCAAGG+AGG | 0.706788 | 6.4:+8848633 | MS.gene48150:CDS |
| GAGATAGAAACAAACACTCG+GGG | 0.708162 | 6.4:+8848883 | MS.gene48150:CDS |
| GAGGACGGGAGTTCTGAAGG+TGG | 0.721621 | 6.4:+8849047 | MS.gene48150:CDS |
| AGTGGACTGATAAGATGGTG+AGG | 0.726752 | 6.4:+8848994 | MS.gene48150:CDS |
| ACTACGAAAAGACTAAGACA+AGG | 0.735602 | 6.4:+8849593 | MS.gene48150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTAATAAAAGGTATAAA+AGG | + | chr6.4:8849192-8849211 | MS.gene48150:CDS | 15.0% |
| !! | AATGCAATCTATTACAATTA+TGG | - | chr6.4:8849370-8849389 | None:intergenic | 20.0% |
| !! | AATTCAACGATCTTAATAAA+AGG | + | chr6.4:8849183-8849202 | MS.gene48150:CDS | 20.0% |
| !! | AGAGAAACAAAAATTCAAAT+GGG | + | chr6.4:8849832-8849851 | MS.gene48150:CDS | 20.0% |
| !! | TAGAGAAACAAAAATTCAAA+TGG | + | chr6.4:8849831-8849850 | MS.gene48150:CDS | 20.0% |
| ! | TATCATGATCATCTCTATTT+CGG | - | chr6.4:8849436-8849455 | None:intergenic | 25.0% |
| ! | TGGAAATTCTTTAAATTGTC+AGG | + | chr6.4:8849643-8849662 | MS.gene48150:CDS | 25.0% |
| AACAAAAATTCAAATGGGAG+AGG | + | chr6.4:8849837-8849856 | MS.gene48150:CDS | 30.0% | |
| GAAATCTATTTCCAAGGTTA+TGG | + | chr6.4:8849118-8849137 | MS.gene48150:CDS | 30.0% | |
| GTATCTTAACGAGAAAGAAA+AGG | + | chr6.4:8849286-8849305 | MS.gene48150:CDS | 30.0% | |
| TAAGTGGAAATCTATTTCCA+AGG | + | chr6.4:8849112-8849131 | MS.gene48150:CDS | 30.0% | |
| ! | AAGGTTTTCCTCTTACAATA+GGG | + | chr6.4:8848811-8848830 | MS.gene48150:CDS | 30.0% |
| AAAAGGCTTAACGATATGCT+TGG | + | chr6.4:8849209-8849228 | MS.gene48150:CDS | 35.0% | |
| AATTTATCCTCACATTGCTG+AGG | - | chr6.4:8849167-8849186 | None:intergenic | 35.0% | |
| ACAGATTCAGATTGAGATGA+TGG | + | chr6.4:8849805-8849824 | MS.gene48150:CDS | 35.0% | |
| ACTACGAAAAGACTAAGACA+AGG | + | chr6.4:8849593-8849612 | MS.gene48150:CDS | 35.0% | |
| AGATGGAAATCAAGCTTTAC+CGG | + | chr6.4:8849709-8849728 | MS.gene48150:CDS | 35.0% | |
| ATCATCAAGAAGGAAGTAGA+GGG | + | chr6.4:8848943-8848962 | MS.gene48150:CDS | 35.0% | |
| ATTTGCAGTGTTGCAGAAAA+AGG | + | chr6.4:8849088-8849107 | MS.gene48150:CDS | 35.0% | |
| CAAAAGTAGTAGCATCTTCA+TGG | - | chr6.4:8849625-8849644 | None:intergenic | 35.0% | |
| CATAAAAGTTCGTATCCTCA+TGG | + | chr6.4:8849671-8849690 | MS.gene48150:CDS | 35.0% | |
| GGATGATCATGATATGGAAA+CGG | + | chr6.4:8849496-8849515 | MS.gene48150:CDS | 35.0% | |
| GTGCTTTCTTCGATTAATGA+AGG | + | chr6.4:8848792-8848811 | MS.gene48150:CDS | 35.0% | |
| TTTGCAGTGTTGCAGAAAAA+GGG | + | chr6.4:8849089-8849108 | MS.gene48150:CDS | 35.0% | |
| ! | ATGATAACGATGATGTGAGA+AGG | + | chr6.4:8849450-8849469 | MS.gene48150:CDS | 35.0% |
| ! | CATGAAGATGCTACTACTTT+TGG | + | chr6.4:8849623-8849642 | MS.gene48150:CDS | 35.0% |
| ! | CATGAGGATACGAACTTTTA+TGG | - | chr6.4:8849673-8849692 | None:intergenic | 35.0% |
| ! | CTGTCAAGTTGTTGAAAATC+CGG | + | chr6.4:8849244-8849263 | MS.gene48150:CDS | 35.0% |
| ! | GAAGGTTTTCCTCTTACAAT+AGG | + | chr6.4:8848810-8848829 | MS.gene48150:CDS | 35.0% |
| !!! | TTTTGGTGGTTTTGATTTGC+CGG | + | chr6.4:8848689-8848708 | MS.gene48150:CDS | 35.0% |
| AAAAGACTAAGACAAGGCCA+AGG | + | chr6.4:8849599-8849618 | MS.gene48150:CDS | 40.0% | |
| AAGGAAGTAGAGGGAAAAAG+GGG | + | chr6.4:8848952-8848971 | MS.gene48150:CDS | 40.0% | |
| AGAAGGAAGTAGAGGGAAAA+AGG | + | chr6.4:8848950-8848969 | MS.gene48150:CDS | 40.0% | |
| AGCTTGGTTACAGAAGCAAT+GGG | + | chr6.4:8849745-8849764 | MS.gene48150:CDS | 40.0% | |
| ATAACGGCGGTGTCTTATAT+TGG | + | chr6.4:8849023-8849042 | MS.gene48150:CDS | 40.0% | |
| ATCAAACTCATCCGTGTCAA+GGG | + | chr6.4:8848763-8848782 | MS.gene48150:CDS | 40.0% | |
| ATGGAAGGGAATTTGTCTCA+AGG | + | chr6.4:8848630-8848649 | MS.gene48150:CDS | 40.0% | |
| ATTTCGGAGAGCTATTTGCA+AGG | - | chr6.4:8849420-8849439 | None:intergenic | 40.0% | |
| CAAGAAAAAAGACCGAGAGT+TGG | + | chr6.4:8849865-8849884 | MS.gene48150:CDS | 40.0% | |
| CATCATCAAGAAGGAAGTAG+AGG | + | chr6.4:8848942-8848961 | MS.gene48150:CDS | 40.0% | |
| CTATCATGATGATCATGACG+AGG | + | chr6.4:8849475-8849494 | MS.gene48150:CDS | 40.0% | |
| CTCGTCATGATCATCATGAT+AGG | - | chr6.4:8849477-8849496 | None:intergenic | 40.0% | |
| CTTAACGATATGCTTGGAAG+GGG | + | chr6.4:8849215-8849234 | MS.gene48150:CDS | 40.0% | |
| GAAGGAAGTAGAGGGAAAAA+GGG | + | chr6.4:8848951-8848970 | MS.gene48150:CDS | 40.0% | |
| GAGATAGAAACAAACACTCG+GGG | + | chr6.4:8848883-8848902 | MS.gene48150:CDS | 40.0% | |
| GCTTAACGATATGCTTGGAA+GGG | + | chr6.4:8849214-8849233 | MS.gene48150:CDS | 40.0% | |
| GGAGATAGAAACAAACACTC+GGG | + | chr6.4:8848882-8848901 | MS.gene48150:CDS | 40.0% | |
| GGGAGATAGAAACAAACACT+CGG | + | chr6.4:8848881-8848900 | MS.gene48150:CDS | 40.0% | |
| GGTAAAGCTTGATTTCCATC+TGG | - | chr6.4:8849710-8849729 | None:intergenic | 40.0% | |
| GTGATAGTCGAGGAATCTTT+GGG | + | chr6.4:8849558-8849577 | MS.gene48150:CDS | 40.0% | |
| TCGATGAACGAGTTTAGTCA+GGG | + | chr6.4:8848861-8848880 | MS.gene48150:CDS | 40.0% | |
| TCGATTACATCCAACAAAGC+CGG | - | chr6.4:8849266-8849285 | None:intergenic | 40.0% | |
| TGACGAGGATGATCATGATA+TGG | + | chr6.4:8849490-8849509 | MS.gene48150:CDS | 40.0% | |
| TGATAGTCGAGGAATCTTTG+GGG | + | chr6.4:8849559-8849578 | MS.gene48150:CDS | 40.0% | |
| TGTTGCAGAAAAAGGGTAAG+TGG | + | chr6.4:8849096-8849115 | MS.gene48150:CDS | 40.0% | |
| TTCAACGTCCCTATTGTAAG+AGG | - | chr6.4:8848822-8848841 | None:intergenic | 40.0% | |
| TTCCAAGGTTATGGCTGAAA+GGG | + | chr6.4:8849127-8849146 | MS.gene48150:CDS | 40.0% | |
| TTTCCAAGGTTATGGCTGAA+AGG | + | chr6.4:8849126-8849145 | MS.gene48150:CDS | 40.0% | |
| ! | CGGATTTTCAACAACTTGAC+AGG | - | chr6.4:8849246-8849265 | None:intergenic | 40.0% |
| ! | GATGGTGAGGCTTTTGATAA+CGG | + | chr6.4:8849007-8849026 | MS.gene48150:CDS | 40.0% |
| ! | TCTCAAGGAGGTATAGTTCA+AGG | + | chr6.4:8848645-8848664 | MS.gene48150:CDS | 40.0% |
| ! | TGTTGAAAATCCGGCTTTGT+TGG | + | chr6.4:8849253-8849272 | MS.gene48150:CDS | 40.0% |
| !! | CAAGCTGCTTTCATGTTTTC+CGG | - | chr6.4:8849731-8849750 | None:intergenic | 40.0% |
| !! | TGATGTTGGTTCATCGTATG+CGG | - | chr6.4:8848747-8848766 | None:intergenic | 40.0% |
| !! | TGCTTTAGAACTGAAGCGAA+AGG | + | chr6.4:8849937-8849956 | MS.gene48150:CDS | 40.0% |
| !! | TGTGAAGTGGACTGATAAGA+TGG | + | chr6.4:8848989-8849008 | MS.gene48150:CDS | 40.0% |
| !!! | TTTGGTGGTTTTGATTTGCC+GGG | + | chr6.4:8848690-8848709 | MS.gene48150:CDS | 40.0% |
| AGAGTTGGAGAAGTTCAAGC+TGG | + | chr6.4:8849880-8849899 | MS.gene48150:CDS | 45.0% | |
| AGATTCCTCGACTATCACCA+TGG | - | chr6.4:8849556-8849575 | None:intergenic | 45.0% | |
| CAGCTTGGTTACAGAAGCAA+TGG | + | chr6.4:8849744-8849763 | MS.gene48150:CDS | 45.0% | |
| CATCAAACTCATCCGTGTCA+AGG | + | chr6.4:8848762-8848781 | MS.gene48150:CDS | 45.0% | |
| CGGAAAACATGAAAGCAGCT+TGG | + | chr6.4:8849729-8849748 | MS.gene48150:CDS | 45.0% | |
| GAACTGAAGCGAAAGGAGAT+CGG | + | chr6.4:8849944-8849963 | MS.gene48150:CDS | 45.0% | |
| GAAGGGAATTTGTCTCAAGG+AGG | + | chr6.4:8848633-8848652 | MS.gene48150:CDS | 45.0% | |
| GACACGGATGAGTTTGATGT+TGG | - | chr6.4:8848761-8848780 | None:intergenic | 45.0% | |
| GATAGTCGAGGAATCTTTGG+GGG | + | chr6.4:8849560-8849579 | MS.gene48150:CDS | 45.0% | |
| GATTCCTCGACTATCACCAT+GGG | - | chr6.4:8849555-8849574 | None:intergenic | 45.0% | |
| GCTTGAACTTCTCCAACTCT+CGG | - | chr6.4:8849880-8849899 | None:intergenic | 45.0% | |
| GGCTTAACGATATGCTTGGA+AGG | + | chr6.4:8849213-8849232 | MS.gene48150:CDS | 45.0% | |
| GGTGATAGTCGAGGAATCTT+TGG | + | chr6.4:8849557-8849576 | MS.gene48150:CDS | 45.0% | |
| GTCGATGAACGAGTTTAGTC+AGG | + | chr6.4:8848860-8848879 | MS.gene48150:CDS | 45.0% | |
| GTGTCTTATATTGGCGAGGA+CGG | + | chr6.4:8849032-8849051 | MS.gene48150:CDS | 45.0% | |
| TAGTAGCATCTTCATGGCCT+TGG | - | chr6.4:8849619-8849638 | None:intergenic | 45.0% | |
| TCCAAGGTTATGGCTGAAAG+GGG | + | chr6.4:8849128-8849147 | MS.gene48150:CDS | 45.0% | |
| TGTCTTATATTGGCGAGGAC+GGG | + | chr6.4:8849033-8849052 | MS.gene48150:CDS | 45.0% | |
| TTCGTATCCTCATGGACAGA+TGG | + | chr6.4:8849679-8849698 | MS.gene48150:CDS | 45.0% | |
| ! | GGAGGTATAGTTCAAGGTGA+TGG | + | chr6.4:8848651-8848670 | MS.gene48150:CDS | 45.0% |
| ! | GGTATAGTTCAAGGTGATGG+TGG | + | chr6.4:8848654-8848673 | MS.gene48150:CDS | 45.0% |
| ! | GGTGATGGTCATCATCAAGA+AGG | + | chr6.4:8848933-8848952 | MS.gene48150:CDS | 45.0% |
| !! | AGTGGACTGATAAGATGGTG+AGG | + | chr6.4:8848994-8849013 | MS.gene48150:CDS | 45.0% |
| !! | ATAGTTCAAGGTGATGGTGG+TGG | + | chr6.4:8848657-8848676 | MS.gene48150:CDS | 45.0% |
| !! | TTAATCGAAGAAAGCACCGC+CGG | - | chr6.4:8848789-8848808 | None:intergenic | 45.0% |
| AAACAAACACTCGGGGAGTG+AGG | + | chr6.4:8848890-8848909 | MS.gene48150:CDS | 50.0% | |
| ACCCCTTTCAGCCATAACCT+TGG | - | chr6.4:8849132-8849151 | None:intergenic | 50.0% | |
| CGATGCGAGTTCATCGTCAA+GGG | + | chr6.4:8848715-8848734 | MS.gene48150:CDS | 50.0% | |
| GAAGAGAACTACGCTTCCCA+TGG | + | chr6.4:8849536-8849555 | MS.gene48150:CDS | 50.0% | |
| GGACAGATGGTACAACCAGA+TGG | + | chr6.4:8849692-8849711 | MS.gene48150:CDS | 50.0% | |
| GGTTGTACCATCTGTCCATG+AGG | - | chr6.4:8849689-8849708 | None:intergenic | 50.0% | |
| TCGATGCGAGTTCATCGTCA+AGG | + | chr6.4:8848714-8848733 | MS.gene48150:CDS | 50.0% | |
| TGTTTCGCCTCAGCAATGTG+AGG | + | chr6.4:8849157-8849176 | MS.gene48150:CDS | 50.0% | |
| ! | AGGAATCTTTGGGGGATTGG+GGG | + | chr6.4:8849568-8849587 | MS.gene48150:CDS | 50.0% |
| ! | CGAGGAATCTTTGGGGGATT+GGG | + | chr6.4:8849566-8849585 | MS.gene48150:CDS | 50.0% |
| ! | GAGGAATCTTTGGGGGATTG+GGG | + | chr6.4:8849567-8849586 | MS.gene48150:CDS | 50.0% |
| ! | TCGAGGAATCTTTGGGGGAT+TGG | + | chr6.4:8849565-8849584 | MS.gene48150:CDS | 50.0% |
| !! | AGTTCTGAAGGTGGTAGTGG+TGG | + | chr6.4:8849056-8849075 | MS.gene48150:CDS | 50.0% |
| !! | GCAATGGGTTGAATCTCGCT+CGG | + | chr6.4:8849760-8849779 | MS.gene48150:CDS | 50.0% |
| !!! | GGTGAGGCTTTTGATAACGG+CGG | + | chr6.4:8849010-8849029 | MS.gene48150:CDS | 50.0% |
| AACTCATCCGTGTCAAGGGC+CGG | + | chr6.4:8848767-8848786 | MS.gene48150:CDS | 55.0% | |
| CGCATGATCCTGCATTGCAG+CGG | + | chr6.4:8849393-8849412 | MS.gene48150:CDS | 55.0% | |
| CGCTGCAATGCAGGATCATG+CGG | - | chr6.4:8849395-8849414 | None:intergenic | 55.0% | |
| CTGAAGCGAAAGGAGATCGG+CGG | + | chr6.4:8849947-8849966 | MS.gene48150:CDS | 55.0% | |
| GCTTCCCATGGTGATAGTCG+AGG | + | chr6.4:8849548-8849567 | MS.gene48150:CDS | 55.0% | |
| GGCGGTGTCTTATATTGGCG+AGG | + | chr6.4:8849028-8849047 | MS.gene48150:CDS | 55.0% | |
| TGACCATCACCACCTTCCTC+CGG | - | chr6.4:8848924-8848943 | None:intergenic | 55.0% | |
| ! | CGATGAACTCGCATCGATCC+CGG | - | chr6.4:8848711-8848730 | None:intergenic | 55.0% |
| ! | GGAATCTTTGGGGGATTGGG+GGG | + | chr6.4:8849569-8849588 | MS.gene48150:CDS | 55.0% |
| !! | CTGAAGGTGGTAGTGGTGGA+AGG | + | chr6.4:8849060-8849079 | MS.gene48150:CDS | 55.0% |
| !! | GGGAGTTCTGAAGGTGGTAG+TGG | + | chr6.4:8849053-8849072 | MS.gene48150:CDS | 55.0% |
| !! | GTTCAAGGTGATGGTGGTGG+TGG | + | chr6.4:8848660-8848679 | MS.gene48150:CDS | 55.0% |
| !!! | GGTGGTGGTGGTGGTTCTTT+TGG | + | chr6.4:8848672-8848691 | MS.gene48150:CDS | 55.0% |
| !!! | GGTGGTGGTGGTTCTTTTGG+TGG | + | chr6.4:8848675-8848694 | MS.gene48150:CDS | 55.0% |
| GAAGATGAGCCGGAGGAAGG+TGG | + | chr6.4:8848912-8848931 | MS.gene48150:CDS | 60.0% | |
| GAGGAAGATGAGCCGGAGGA+AGG | + | chr6.4:8848909-8848928 | MS.gene48150:CDS | 60.0% | |
| GAGGGAAAAAGGGGTCGCCT+TGG | + | chr6.4:8848961-8848980 | MS.gene48150:CDS | 60.0% | |
| GAGTGAGGAAGATGAGCCGG+AGG | + | chr6.4:8848905-8848924 | MS.gene48150:CDS | 60.0% | |
| GGGGAGTGAGGAAGATGAGC+CGG | + | chr6.4:8848902-8848921 | MS.gene48150:CDS | 60.0% | |
| GTCCACTTCACACGCTGCCA+AGG | - | chr6.4:8848981-8849000 | None:intergenic | 60.0% | |
| TGCAAGGACCGCTGCAATGC+AGG | - | chr6.4:8849404-8849423 | None:intergenic | 60.0% | |
| !! | CAAGGTGATGGTGGTGGTGG+TGG | + | chr6.4:8848663-8848682 | MS.gene48150:CDS | 60.0% |
| !! | GAGGACGGGAGTTCTGAAGG+TGG | + | chr6.4:8849047-8849066 | MS.gene48150:CDS | 60.0% |
| CGCCTTGGCAGCGTGTGAAG+TGG | + | chr6.4:8848976-8848995 | MS.gene48150:CDS | 65.0% | |
| GAGCCGGAGGAAGGTGGTGA+TGG | + | chr6.4:8848918-8848937 | MS.gene48150:CDS | 65.0% | |
| TCATCCGTGTCAAGGGCCGG+CGG | + | chr6.4:8848770-8848789 | MS.gene48150:CDS | 65.0% | |
| ! | GGCGAGGACGGGAGTTCTGA+AGG | + | chr6.4:8849044-8849063 | MS.gene48150:CDS | 65.0% |
| AGCACCGCCGGCCCTTGACA+CGG | - | chr6.4:8848777-8848796 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 8848630 | 8849985 | 8848630 | ID=MS.gene48150 |
| chr6.4 | mRNA | 8848630 | 8849985 | 8848630 | ID=MS.gene48150.t1;Parent=MS.gene48150 |
| chr6.4 | exon | 8848630 | 8849985 | 8848630 | ID=MS.gene48150.t1.exon1;Parent=MS.gene48150.t1 |
| chr6.4 | CDS | 8848630 | 8849985 | 8848630 | ID=cds.MS.gene48150.t1;Parent=MS.gene48150.t1 |
| Gene Sequence |
| Protein sequence |
