AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48787

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48787.t1 MTR_4g029600 92.208 231 8 2 1 231 1 221 2.85e-93 273
MS.gene48787.t1 MTR_4g029620 74.254 268 29 4 1 228 1 268 4.18e-88 265
MS.gene48787.t1 MTR_4g029620 88.177 203 24 0 26 228 116 318 4.14e-78 239
MS.gene48787.t1 MTR_4g029620 85.437 206 30 0 25 230 105 310 1.25e-76 236
MS.gene48787.t1 MTR_4g029620 84.878 205 31 0 26 230 126 330 1.81e-74 230
MS.gene48787.t1 MTR_4g029620 81.944 216 29 2 25 230 140 355 1.30e-73 228
MS.gene48787.t1 MTR_4g029620 78.995 219 31 3 26 229 161 379 1.58e-69 218
MS.gene48787.t1 MTR_4g029620 75.333 150 32 1 25 174 235 379 9.23e-42 146
MS.gene48787.t1 MTR_4g029550 89.076 238 16 2 1 228 1 238 7.96e-88 262
MS.gene48787.t1 MTR_4g029550 90.278 216 11 2 26 231 96 311 2.23e-83 251
MS.gene48787.t1 MTR_4g029550 81.818 66 7 1 25 90 250 310 5.68e-14 70.1
MS.gene48787.t1 MTR_4g029630 75.576 217 43 2 22 228 1 217 7.29e-68 208
MS.gene48787.t1 MTR_4g029630 79.856 139 28 0 92 230 6 144 1.97e-41 140
MS.gene48787.t1 MTR_4g029630 82.178 101 18 0 130 230 4 104 4.34e-29 108
MS.gene48787.t1 MTR_6g011410 42.331 163 92 1 24 186 67 227 2.39e-33 120
MS.gene48787.t1 MTR_6g011410 43.871 155 87 0 62 216 73 227 2.55e-33 120
MS.gene48787.t1 MTR_6g011410 43.396 159 90 0 48 206 69 227 4.25e-33 120
MS.gene48787.t1 MTR_6g011410 43.396 159 90 0 63 221 69 227 4.25e-33 120
MS.gene48787.t1 MTR_6g011410 43.396 159 90 0 38 196 69 227 5.73e-33 120
MS.gene48787.t1 MTR_6g011410 42.138 159 92 0 23 181 69 227 8.49e-33 119
MS.gene48787.t1 MTR_6g011410 43.871 155 87 0 37 191 73 227 1.12e-32 119
MS.gene48787.t1 MTR_6g011410 43.871 155 87 0 47 201 73 227 3.08e-32 118
MS.gene48787.t1 MTR_6g011410 43.871 155 87 0 57 211 73 227 4.14e-32 117
MS.gene48787.t1 MTR_6g011410 43.506 154 87 0 77 230 73 226 5.76e-32 117
MS.gene48787.t1 MTR_6g011410 44.156 154 86 0 72 225 73 226 7.52e-32 117
MS.gene48787.t1 MTR_6g011410 42.657 143 77 1 93 230 69 211 5.09e-25 99.0
MS.gene48787.t1 MTR_4g029760 47.321 112 50 3 1 112 1 103 4.07e-17 74.7
MS.gene48787.t1 MTR_3g415650 49.474 95 46 1 1 93 1 95 1.85e-15 70.1
MS.gene48787.t1 MTR_4g029770 43.519 108 40 4 1 99 1 96 1.61e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48787.t1 AT3G22142 50.746 201 99 0 24 224 1101 1301 2.61e-49 173
MS.gene48787.t1 AT3G22142 50.495 202 100 0 25 226 1097 1298 6.92e-49 172
MS.gene48787.t1 AT3G22142 51.020 196 96 0 33 228 1100 1295 4.29e-47 167
MS.gene48787.t1 AT3G22142 50.510 196 97 0 35 230 1097 1292 5.16e-47 166
MS.gene48787.t1 AT3G22142 48.416 221 98 1 27 231 1053 1273 1.79e-46 165
MS.gene48787.t1 AT3G22142 45.923 233 106 1 18 230 1160 1392 1.82e-46 165
MS.gene48787.t1 AT3G22142 45.935 246 92 2 24 228 995 1240 3.01e-46 164
MS.gene48787.t1 AT3G22142 47.964 221 99 1 26 230 1057 1277 4.83e-46 164
MS.gene48787.t1 AT3G22142 45.418 251 94 3 21 228 1005 1255 1.38e-45 162
MS.gene48787.t1 AT3G22142 46.121 232 100 1 24 230 1126 1357 1.46e-45 162
MS.gene48787.t1 AT3G22142 45.690 232 101 1 24 230 1136 1367 1.23e-44 159
MS.gene48787.t1 AT3G22142 47.085 223 98 1 24 226 1151 1373 1.94e-44 159
MS.gene48787.t1 AT3G22142 45.374 227 104 1 24 230 1116 1342 2.37e-44 159
MS.gene48787.t1 AT3G22142 46.256 227 102 1 24 230 1156 1382 7.40e-44 157
MS.gene48787.t1 AT3G22142 47.032 219 101 1 24 227 1176 1394 6.35e-42 152
MS.gene48787.t1 AT3G22142 44.589 231 87 2 39 228 985 1215 2.14e-40 147
MS.gene48787.t1 AT3G22142 40.072 277 95 3 25 230 916 1192 1.05e-37 140
MS.gene48787.t1 AT3G22142 42.529 261 94 3 24 228 880 1140 2.06e-37 139
MS.gene48787.t1 AT3G22142 45.946 222 100 1 29 230 625 846 3.57e-37 138
MS.gene48787.t1 AT3G22142 42.745 255 95 3 27 230 908 1162 6.61e-37 137
MS.gene48787.t1 AT3G22142 44.156 231 94 2 26 221 572 802 8.66e-37 137
MS.gene48787.t1 AT3G22142 40.293 273 97 3 24 230 875 1147 1.57e-36 136
MS.gene48787.t1 AT3G22142 40.672 268 98 3 24 230 890 1157 5.60e-36 135
MS.gene48787.t1 AT3G22142 39.194 273 100 3 24 230 910 1182 5.60e-36 135
MS.gene48787.t1 AT3G22142 38.971 272 101 3 24 230 510 781 7.84e-36 134
MS.gene48787.t1 AT3G22142 46.083 217 97 1 24 220 630 846 8.79e-36 134
MS.gene48787.t1 AT3G22142 39.483 271 99 3 25 230 501 771 1.28e-35 134
MS.gene48787.t1 AT3G22142 39.405 269 98 3 27 230 673 941 1.32e-35 134
MS.gene48787.t1 AT3G22142 44.144 222 94 2 24 215 625 846 1.54e-35 133
MS.gene48787.t1 AT3G22142 38.971 272 101 3 24 230 530 801 2.15e-35 133
MS.gene48787.t1 AT3G22142 38.603 272 102 3 24 230 520 791 5.47e-35 132
MS.gene48787.t1 AT3G22142 38.889 270 100 3 24 228 640 909 2.34e-34 130
MS.gene48787.t1 AT3G22142 37.868 272 104 3 24 230 690 961 3.09e-34 130
MS.gene48787.t1 AT3G22142 38.267 277 101 3 24 230 745 1021 4.04e-34 129
MS.gene48787.t1 AT3G22142 38.519 270 101 3 24 228 525 794 4.49e-34 129
MS.gene48787.t1 AT3G22142 38.516 283 104 4 18 230 644 926 4.94e-34 129
MS.gene48787.t1 AT3G22142 38.148 270 102 3 24 228 635 904 8.97e-34 128
MS.gene48787.t1 AT3G22142 41.538 260 92 3 26 225 822 1081 3.76e-33 127
MS.gene48787.t1 AT3G22142 38.267 277 96 3 27 228 758 1034 4.73e-33 126
MS.gene48787.t1 AT3G22142 38.519 270 91 3 36 230 452 721 4.82e-33 126
MS.gene48787.t1 AT3G22142 38.202 267 100 3 24 225 700 966 2.20e-32 124
MS.gene48787.t1 AT3G22142 37.037 297 97 4 24 230 415 711 1.28e-31 122
MS.gene48787.t1 AT3G22142 37.918 269 97 3 26 224 767 1035 1.31e-31 122
MS.gene48787.t1 AT3G22142 35.099 302 101 4 24 230 455 756 1.74e-31 122
MS.gene48787.t1 AT3G22142 40.385 260 90 3 36 230 822 1081 2.31e-31 121
MS.gene48787.t1 AT3G22142 37.801 291 96 4 25 230 401 691 2.25e-30 119
MS.gene48787.t1 AT3G22142 37.594 266 91 3 24 214 770 1035 3.78e-30 118
MS.gene48787.t1 AT3G22142 36.803 269 102 4 25 225 328 596 4.90e-30 117
MS.gene48787.t1 AT3G22142 34.000 300 103 4 24 228 360 659 2.08e-28 113
MS.gene48787.t1 AT3G22142 34.667 300 101 4 24 228 380 679 7.11e-28 111
MS.gene48787.t1 AT3G22142 34.420 276 106 7 29 230 202 476 3.88e-22 95.1
MS.gene48787.t1 AT1G54970 47.849 186 82 9 1 179 3 180 1.48e-21 91.7
MS.gene48787.t1 AT1G54970 52.597 154 60 7 86 231 29 177 1.06e-17 80.9

Find 90 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTGGAGGTTTCTCAAC+TGG 0.260341 4.4:+73393797 None:intergenic
AACCGGAGGCTTGTCATAAT+TGG 0.298691 4.4:+73394339 None:intergenic
GTCGAGAAGCCACCAGTTTA+CGG 0.299440 4.4:-73393749 MS.gene48787:CDS
TGCTCTCTTTGTCATCCCTC+AGG 0.337569 4.4:-73394368 MS.gene48787:CDS
ACTACTGGTGGCTTGTAAAC+TGG 0.353333 4.4:+73394082 None:intergenic
TCAACTGGTGGCTTGTAAAC+TGG 0.353715 4.4:+73393962 None:intergenic
TATACAGGTGGCTTGTAAAC+TGG 0.355070 4.4:+73393902 None:intergenic
TCAACTGGTGGCTTGTAGAC+TGG 0.401548 4.4:+73394037 None:intergenic
TACACCGGTGGTTGGTAAAC+CGG 0.401947 4.4:+73394322 None:intergenic
TACACAGGTGGCTTCTCTAC+AGG 0.405035 4.4:+73394262 None:intergenic
TAAACTGGAGGCTTCTCGAC+TGG 0.411430 4.4:+73393977 None:intergenic
TAAACTGGTGGCTTGTACAC+TGG 0.415797 4.4:+73393782 None:intergenic
TAAACAGGAGGTTTGTAAAC+CGG 0.417330 4.4:+73394172 None:intergenic
TACACCGGTGGCTTGTAAAC+AGG 0.419007 4.4:+73394157 None:intergenic
ACACTGGAGGTTTCTCAACT+GGG 0.423507 4.4:+73393798 None:intergenic
TAGACCGGAGGCTTCTCAAC+TGG 0.427843 4.4:+73393842 None:intergenic
TGGTGAGGAGGTCCGTAAAC+TGG 0.427954 4.4:+73393737 None:intergenic
TAAACTGGTGGCTTCTCGAC+TGG 0.430061 4.4:+73393752 None:intergenic
TAGACTGGAGGCTTCTCAAC+TGG 0.434291 4.4:+73394022 None:intergenic
TCAACTGGAGGCTTGTAAAC+AGG 0.435382 4.4:+73393857 None:intergenic
TCGACTGGAGGCTTGTAAAC+TGG 0.436990 4.4:+73393767 None:intergenic
TACACCGGAGGCTTGTAAAC+AGG 0.441057 4.4:+73393932 None:intergenic
TAAACAGGTGGCTTGTAGAC+TGG 0.443434 4.4:+73393872 None:intergenic
TAAACAGGTGGCTTGTAGAC+TGG 0.443434 4.4:+73394007 None:intergenic
TATACCGGAGGCTTGTAAAC+AGG 0.449409 4.4:+73394112 None:intergenic
AAACTGGAGGCTTCTCGACT+GGG 0.451750 4.4:+73393978 None:intergenic
TAAACAGGAGGCTTCTCAAC+TGG 0.459812 4.4:+73393947 None:intergenic
TAAACAGGAGGCTTCTCAAC+TGG 0.459812 4.4:+73394127 None:intergenic
TCAACTGGTGGCTTGTACAC+CGG 0.460751 4.4:+73394142 None:intergenic
TATACAGGTGGCTTCACTAC+TGG 0.464722 4.4:+73394067 None:intergenic
GCTCTCTTTGTCATCCCTCA+GGG 0.466378 4.4:-73394367 MS.gene48787:CDS
TAGACTGGAGGCTTGTATAC+AGG 0.470954 4.4:+73393887 None:intergenic
TAGACTGGAGGCTTGTATAC+AGG 0.470954 4.4:+73394052 None:intergenic
TCAACAGGTGGCTTATACAC+CGG 0.488057 4.4:+73394307 None:intergenic
GCCTCCTGTTTACAAGCCTC+CGG 0.502841 4.4:-73393936 MS.gene48787:CDS
GCCTCCTGTTTACAAGCCTC+CGG 0.504860 4.4:-73394116 MS.gene48787:CDS
AAACAGGAGGTTTGTAAACC+GGG 0.508037 4.4:+73394173 None:intergenic
TACACAGGTGGCTTATACAC+AGG 0.513962 4.4:+73394247 None:intergenic
TGCCAATTATGACAAGCCTC+CGG 0.514734 4.4:-73394341 MS.gene48787:CDS
TAAACTGGAGGCTTGTACAC+CGG 0.514976 4.4:+73393917 None:intergenic
AAGCAGCACAAGGAAGTTTG+AGG 0.519715 4.4:+73394396 None:intergenic
TAAACTGGAGGCTTGTATAC+CGG 0.526226 4.4:+73394097 None:intergenic
TAAACAGGTGGCTTGTAGAC+CGG 0.532067 4.4:+73393827 None:intergenic
GCCTCCAGTTGAGAAGCCTC+CGG 0.551358 4.4:-73393846 MS.gene48787:CDS
ACACAGGTGGCTTCTCTACA+GGG 0.554240 4.4:+73394263 None:intergenic
GGGAACTATGGGTGGTGAGG+AGG 0.563963 4.4:+73393725 None:intergenic
CACTGGAGGTTTCTCAACTG+GGG 0.564860 4.4:+73393799 None:intergenic
AACTGGAGGCTTCTCGACTG+GGG 0.573125 4.4:+73393979 None:intergenic
CGAGGGAACTATGGGTGGTG+AGG 0.583741 4.4:+73393722 None:intergenic
ACCTCCTGTTTACAAGCCAC+CGG 0.585895 4.4:-73394161 MS.gene48787:CDS
ACTGGAGGTTTCTCAACTGG+GGG 0.586328 4.4:+73393800 None:intergenic
ACTGGAGGCTTCTCAACTGG+TGG 0.597757 4.4:+73394025 None:intergenic
ACAGGTGGCTTCACTACTGG+TGG 0.613745 4.4:+73394070 None:intergenic
ACTGGAGGCTTCTCGACTGG+GGG 0.614813 4.4:+73393980 None:intergenic
ACCGGAGGCTTCTCAACTGG+AGG 0.615468 4.4:+73393845 None:intergenic
ACTGGTGGCTTCTCGACTGG+AGG 0.616423 4.4:+73393755 None:intergenic
AACAGGAGGTTTGTAAACCG+GGG 0.616438 4.4:+73394174 None:intergenic
ACTGGTGGCTTGTAGACTGG+AGG 0.619678 4.4:+73394040 None:intergenic
ACTGGAGGCTTGTAAACTGG+TGG 0.629358 4.4:+73393770 None:intergenic
GCCACCTGTGTACAAGCCCC+CGG 0.630519 4.4:-73394236 MS.gene48787:CDS
TCATAATTGGCAAGACCCTG+AGG 0.637663 4.4:+73394352 None:intergenic
ACCGGTGGCTTGTAAACAGG+AGG 0.639427 4.4:+73394160 None:intergenic
TGAGGAGGTCCGTAAACTGG+TGG 0.639666 4.4:+73393740 None:intergenic
ACAGGAGGCTTCTCAACTGG+TGG 0.640818 4.4:+73393950 None:intergenic
ACAGGAGGCTTCTCAACTGG+TGG 0.640818 4.4:+73394130 None:intergenic
ACCGGAGGCTTGTAAACAGG+AGG 0.642069 4.4:+73394115 None:intergenic
CATAATTGGCAAGACCCTGA+GGG 0.642655 4.4:+73394353 None:intergenic
ACAGGTGGCTTCTCTACAGG+GGG 0.643712 4.4:+73394265 None:intergenic
GCCTCCGGTTTACCAACCAC+CGG 0.644187 4.4:-73394326 MS.gene48787:CDS
ACTGGTGGCTTGTACACCGG+TGG 0.645745 4.4:+73394145 None:intergenic
ACCGGAGGCTTGTAAACAGG+AGG 0.649300 4.4:+73393935 None:intergenic
GTGGCTTATACACCGGTGGT+TGG 0.650767 4.4:+73394314 None:intergenic
ACTGGAGGCTTGTAAACAGG+TGG 0.655913 4.4:+73393860 None:intergenic
CTACCCGAGGGAACTATGGG+TGG 0.657162 4.4:+73393717 None:intergenic
ACTGGTGGCTTGTAAACTGG+AGG 0.657686 4.4:+73393965 None:intergenic
CACAGGTGGCTTCTCTACAG+GGG 0.659499 4.4:+73394264 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 4.4:+73393890 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 4.4:+73394055 None:intergenic
ACTGGTGGCTTGTACACTGG+AGG 0.664566 4.4:+73393785 None:intergenic
ACAGGAGGTTTGTAAACCGG+GGG 0.670551 4.4:+73394175 None:intergenic
ACTGGAGGCTTGTATACCGG+AGG 0.673497 4.4:+73394100 None:intergenic
ACCGGTGGTTGGTAAACCGG+AGG 0.675579 4.4:+73394325 None:intergenic
ACTGGTGGCTTGTAAACTGG+AGG 0.680586 4.4:+73394085 None:intergenic
ACAGGTGGCTTGTAGACTGG+AGG 0.680593 4.4:+73393875 None:intergenic
ACAGGTGGCTTGTAGACTGG+AGG 0.680593 4.4:+73394010 None:intergenic
ACTGGAGGCTTGTACACCGG+AGG 0.680728 4.4:+73393920 None:intergenic
ACAGGTGGCTTGTAGACCGG+AGG 0.684150 4.4:+73393830 None:intergenic
ACAGGTGGCTTGTAAACTGG+AGG 0.685781 4.4:+73393905 None:intergenic
ACAGGTGGCTTATACACCGG+TGG 0.697936 4.4:+73394310 None:intergenic
ACAGGTGGCTTATACACAGG+TGG 0.704202 4.4:+73394250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TAAACAGGAGGTTTGTAAAC+CGG + chr4.4:73393964-73393983 None:intergenic 35.0%
AAACAGGAGGTTTGTAAACC+GGG + chr4.4:73393963-73393982 None:intergenic 40.0%
TAAACTGGAGGCTTGTATAC+CGG + chr4.4:73394039-73394058 None:intergenic 40.0%
! TATACAGGTGGCTTGTAAAC+TGG + chr4.4:73394234-73394253 None:intergenic 40.0%
AACAGGAGGTTTGTAAACCG+GGG + chr4.4:73393962-73393981 None:intergenic 45.0%
AACCGGAGGCTTGTCATAAT+TGG + chr4.4:73393797-73393816 None:intergenic 45.0%
AAGCAGCACAAGGAAGTTTG+AGG + chr4.4:73393740-73393759 None:intergenic 45.0%
ACACTGGAGGTTTCTCAACT+GGG + chr4.4:73394338-73394357 None:intergenic 45.0%
CATAATTGGCAAGACCCTGA+GGG + chr4.4:73393783-73393802 None:intergenic 45.0%
GAGCAAAAAGAAGCAGCACA+AGG + chr4.4:73393750-73393769 None:intergenic 45.0%
TAAACAGGAGGCTTCTCAAC+TGG + chr4.4:73394009-73394028 None:intergenic 45.0%
TAAACTGGAGGCTTGTACAC+CGG + chr4.4:73394219-73394238 None:intergenic 45.0%
TACACAGGTGGCTTATACAC+AGG + chr4.4:73393889-73393908 None:intergenic 45.0%
TACACTGGAGGTTTCTCAAC+TGG + chr4.4:73394339-73394358 None:intergenic 45.0%
TAGACTGGAGGCTTGTATAC+AGG + chr4.4:73394084-73394103 None:intergenic 45.0%
TATACAGGTGGCTTCACTAC+TGG + chr4.4:73394069-73394088 None:intergenic 45.0%
TATACCGGAGGCTTGTAAAC+AGG + chr4.4:73394024-73394043 None:intergenic 45.0%
TCAACAGGTGGCTTATACAC+CGG + chr4.4:73393829-73393848 None:intergenic 45.0%
TCAACTGGAGGCTTGTAAAC+AGG + chr4.4:73394279-73394298 None:intergenic 45.0%
TCATAATTGGCAAGACCCTG+AGG + chr4.4:73393784-73393803 None:intergenic 45.0%
TGCCAATTATGACAAGCCTC+CGG - chr4.4:73393792-73393811 MS.gene48787:CDS 45.0%
! ACTACTGGTGGCTTGTAAAC+TGG + chr4.4:73394054-73394073 None:intergenic 45.0%
! TAAACAGGTGGCTTGTAGAC+CGG + chr4.4:73394129-73394148 None:intergenic 45.0%
! TAAACAGGTGGCTTGTAGAC+TGG + chr4.4:73394129-73394148 None:intergenic 45.0%
! TAAACTGGTGGCTTGTACAC+TGG + chr4.4:73394354-73394373 None:intergenic 45.0%
! TACACAGGTGGCTTTTCTAC+CGG + chr4.4:73393919-73393938 None:intergenic 45.0%
! TCAACTGGTGGCTTGTAAAC+TGG + chr4.4:73394174-73394193 None:intergenic 45.0%
AAACTGGAGGCTTCTCGACT+GGG + chr4.4:73394158-73394177 None:intergenic 50.0%
ACACAGGTGGCTTCTCTACA+GGG + chr4.4:73393873-73393892 None:intergenic 50.0%
ACAGGAGGTTTGTAAACCGG+GGG + chr4.4:73393961-73393980 None:intergenic 50.0%
ACAGGTGGCTTATACACAGG+TGG + chr4.4:73393886-73393905 None:intergenic 50.0%
ACCTCCTGTTTACAAGCCAC+CGG - chr4.4:73393972-73393991 MS.gene48787:CDS 50.0%
ACTGGAGGCTTGTAAACAGG+TGG + chr4.4:73394276-73394295 None:intergenic 50.0%
ACTGGAGGCTTGTAAACTGG+TGG + chr4.4:73394366-73394385 None:intergenic 50.0%
ACTGGAGGCTTGTATACAGG+TGG + chr4.4:73394081-73394100 None:intergenic 50.0%
ACTGGAGGTTTCTCAACTGG+GGG + chr4.4:73394336-73394355 None:intergenic 50.0%
CACTGGAGGTTTCTCAACTG+GGG + chr4.4:73394337-73394356 None:intergenic 50.0%
CTACAGGGGGTTTGTAGACA+GGG + chr4.4:73393858-73393877 None:intergenic 50.0%
GCTCTCTTTGTCATCCCTCA+GGG - chr4.4:73393766-73393785 MS.gene48787:CDS 50.0%
GTCGAGAAGCCACCAGTTTA+CGG - chr4.4:73394384-73394403 MS.gene48787:CDS 50.0%
TAAACTGGAGGCTTCTCGAC+TGG + chr4.4:73394159-73394178 None:intergenic 50.0%
TAAACTGGTGGCTTCTCGAC+TGG + chr4.4:73394384-73394403 None:intergenic 50.0%
TACACAGGTGGCTTCTCTAC+AGG + chr4.4:73393874-73393893 None:intergenic 50.0%
TACACCGGAGGCTTGTAAAC+AGG + chr4.4:73394204-73394223 None:intergenic 50.0%
TACAGGGGGTTTGTAGACAG+GGG + chr4.4:73393857-73393876 None:intergenic 50.0%
TAGACAGGGGGTTTCTCAAC+AGG + chr4.4:73393844-73393863 None:intergenic 50.0%
TAGACTGGAGGCTTCTCAAC+TGG + chr4.4:73394114-73394133 None:intergenic 50.0%
TCAACTGGGGGCTTGTAAAC+AGG + chr4.4:73394324-73394343 None:intergenic 50.0%
TCGACTGGAGGCTTGTAAAC+TGG + chr4.4:73394369-73394388 None:intergenic 50.0%
TCTACAGGGGGTTTGTAGAC+AGG + chr4.4:73393859-73393878 None:intergenic 50.0%
TGCTCTCTTTGTCATCCCTC+AGG - chr4.4:73393765-73393784 MS.gene48787:CDS 50.0%
! ACACAGGTGGCTTTTCTACC+GGG + chr4.4:73393918-73393937 None:intergenic 50.0%
! ACAGGTGGCTTGTAAACTGG+AGG + chr4.4:73394231-73394250 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACTGG+AGG + chr4.4:73394051-73394070 None:intergenic 50.0%
! TACACCGGTGGCTTGTAAAC+AGG + chr4.4:73393979-73393998 None:intergenic 50.0%
! TCAACTGGTGGCTTGTACAC+CGG + chr4.4:73393994-73394013 None:intergenic 50.0%
! TCAACTGGTGGCTTGTAGAC+TGG + chr4.4:73394099-73394118 None:intergenic 50.0%
!! TACACCGGTGGTTGGTAAAC+CGG + chr4.4:73393814-73393833 None:intergenic 50.0%
AAACCGGGGGTTTCACGACA+GGG + chr4.4:73393948-73393967 None:intergenic 55.0%
AACTGGAGGCTTCTCGACTG+GGG + chr4.4:73394157-73394176 None:intergenic 55.0%
ACAGGAGGCTTCTCAACTGG+TGG + chr4.4:73394006-73394025 None:intergenic 55.0%
ACAGGGGGTTTCTCAACAGG+TGG + chr4.4:73393841-73393860 None:intergenic 55.0%
ACAGGGGGTTTGTACACAGG+TGG + chr4.4:73393931-73393950 None:intergenic 55.0%
ACAGGGGGTTTGTAGACAGG+GGG + chr4.4:73393856-73393875 None:intergenic 55.0%
ACAGGTGGCTTATACACCGG+TGG + chr4.4:73393826-73393845 None:intergenic 55.0%
ACAGGTGGCTTCACTACTGG+TGG + chr4.4:73394066-73394085 None:intergenic 55.0%
ACAGGTGGCTTCTCTACAGG+GGG + chr4.4:73393871-73393890 None:intergenic 55.0%
ACCGGAGGCTTGTAAACAGG+AGG + chr4.4:73394021-73394040 None:intergenic 55.0%
ACGACAGGGGGTTTGTACAC+AGG + chr4.4:73393934-73393953 None:intergenic 55.0%
ACTGGAGGCTTCTCAACTGG+TGG + chr4.4:73394111-73394130 None:intergenic 55.0%
ACTGGAGGCTTGTATACCGG+AGG + chr4.4:73394036-73394055 None:intergenic 55.0%
ACTGGGGGCTTGTAAACAGG+TGG + chr4.4:73394141-73394160 None:intergenic 55.0%
CACAGGTGGCTTCTCTACAG+GGG + chr4.4:73393872-73393891 None:intergenic 55.0%
GCCTCCTGTTTACAAGCCTC+CGG - chr4.4:73394017-73394036 MS.gene48787:CDS 55.0%
GTGGCTTATACACCGGTGGT+TGG + chr4.4:73393822-73393841 None:intergenic 55.0%
TAAACCGGGGGTTTCACGAC+AGG + chr4.4:73393949-73393968 None:intergenic 55.0%
TAGACCGGAGGCTTCTCAAC+TGG + chr4.4:73394294-73394313 None:intergenic 55.0%
TCGACTGGGGGCTTGTAAAC+AGG + chr4.4:73394144-73394163 None:intergenic 55.0%
TGAGGAGGTCCGTAAACTGG+TGG + chr4.4:73394396-73394415 None:intergenic 55.0%
TGGTGAGGAGGTCCGTAAAC+TGG + chr4.4:73394399-73394418 None:intergenic 55.0%
! ACAGGTGGCTTGTAGACTGG+AGG + chr4.4:73394126-73394145 None:intergenic 55.0%
! ACAGGTGGCTTTTCTACCGG+GGG + chr4.4:73393916-73393935 None:intergenic 55.0%
! ACCGGTGGCTTGTAAACAGG+AGG + chr4.4:73393976-73393995 None:intergenic 55.0%
! ACTGGTGGCTTGTACACTGG+AGG + chr4.4:73394351-73394370 None:intergenic 55.0%
! ACTGGTGGCTTGTAGACTGG+AGG + chr4.4:73394096-73394115 None:intergenic 55.0%
! CACAGGTGGCTTTTCTACCG+GGG + chr4.4:73393917-73393936 None:intergenic 55.0%
AACCGGGGGTTTCACGACAG+GGG + chr4.4:73393947-73393966 None:intergenic 60.0%
ACCGGAGGCTTCTCAACTGG+AGG + chr4.4:73394291-73394310 None:intergenic 60.0%
ACTGGAGGCTTCTCGACTGG+GGG + chr4.4:73394156-73394175 None:intergenic 60.0%
ACTGGAGGCTTGTACACCGG+AGG + chr4.4:73394216-73394235 None:intergenic 60.0%
ACTGGTGGCTTCTCGACTGG+AGG + chr4.4:73394381-73394400 None:intergenic 60.0%
GCCTCCAGTTGAGAAGCCTC+CGG - chr4.4:73394287-73394306 MS.gene48787:CDS 60.0%
GCCTCCGGTTTACCAACCAC+CGG - chr4.4:73393807-73393826 MS.gene48787:CDS 60.0%
TCTACCGGGGGCTTGTACAC+AGG + chr4.4:73393904-73393923 None:intergenic 60.0%
! ACAGGTGGCTTGTAGACCGG+AGG + chr4.4:73394306-73394325 None:intergenic 60.0%
! ACTGGTGGCTTGTACACCGG+TGG + chr4.4:73393991-73394010 None:intergenic 60.0%
!! ACCGGTGGTTGGTAAACCGG+AGG + chr4.4:73393811-73393830 None:intergenic 60.0%
ACCCCCTGTCGTGAAACCCC+CGG - chr4.4:73393942-73393961 MS.gene48787:CDS 65.0%
ACCGGGGGCTTGTACACAGG+TGG + chr4.4:73393901-73393920 None:intergenic 65.0%
ACCGGGGGTTTCACGACAGG+GGG + chr4.4:73393946-73393965 None:intergenic 65.0%
GCCACCTGTGTACAAGCCCC+CGG - chr4.4:73393897-73393916 MS.gene48787:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 73393730 73394425 73393730 ID=MS.gene48787
chr4.4 mRNA 73393730 73394425 73393730 ID=MS.gene48787.t1;Parent=MS.gene48787
chr4.4 exon 73393730 73394425 73393730 ID=MS.gene48787.t1.exon1;Parent=MS.gene48787.t1
chr4.4 CDS 73393730 73394425 73393730 ID=cds.MS.gene48787.t1;Parent=MS.gene48787.t1
Gene Sequence

>MS.gene48787

ATGGCTTCCTCAAACTTCCTTGTGCTGCTTCTTTTTGCTCTCTTTGTCATCCCTCAGGGTCTTGCCAATTATGACAAGCCTCCGGTTTACCAACCACCGGTGTATAAGCCACCTGTTGAGAAACCCCCTGTCTACAAACCCCCTGTAGAGAAGCCACCTGTGTATAAGCCACCTGTGTACAAGCCCCCGGTAGAAAAGCCACCTGTGTACAAACCCCCTGTCGTGAAACCCCCGGTTTACAAACCTCCTGTTTACAAGCCACCGGTGTACAAGCCACCAGTTGAGAAGCCTCCTGTTTACAAGCCTCCGGTATACAAGCCTCCAGTTTACAAGCCACCAGTAGTGAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCAGTTGAGAAGCCTCCAGTCTACAAGCCACCTGTTTACAAGCCCCCAGTCGAGAAGCCTCCAGTTTACAAGCCACCAGTTGAGAAGCCTCCTGTTTACAAGCCTCCGGTGTACAAGCCTCCAGTTTACAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCTGTTTACAAGCCTCCAGTTGAGAAGCCTCCGGTCTACAAGCCACCTGTTTACAAGCCCCCAGTTGAGAAACCTCCAGTGTACAAGCCACCAGTTTACAAGCCTCCAGTCGAGAAGCCACCAGTTTACGGACCTCCTCACCACCCATAG
Protein sequence

>MS.gene48787.t1

MASSNFLVLLLFALFVIPQGLANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVVKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVVKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVYKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYGPPHHP