Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49718.t1 | XP_003630362.1 | 95.5 | 645 | 24 | 2 | 1 | 645 | 1 | 640 | 3.70E-254 | 887.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49718.t1 | Q9MA92 | 48.4 | 415 | 175 | 6 | 1 | 415 | 1 | 376 | 4.1e-84 | 313.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49718.t1 | G7LFP4 | 95.5 | 645 | 24 | 2 | 1 | 645 | 1 | 640 | 2.7e-254 | 887.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050227 | MS.gene49718 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene49718 | 0.808025 | 3.79E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene49718 | 0.803139 | 4.02E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene49718 | 0.801625 | 8.24E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene49718 | 0.800003 | 1.77E-48 | -1.69E-46 |
| MS.gene052309 | MS.gene49718 | -0.817282 | 3.58E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene49718 | 0.806221 | 9.14E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene49718 | 0.823687 | 1.21E-53 | -1.69E-46 |
| MS.gene053216 | MS.gene49718 | 0.823515 | 1.33E-53 | -1.69E-46 |
| MS.gene053221 | MS.gene49718 | 0.801949 | 7.07E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene49718 | 0.80086 | 1.18E-48 | -1.69E-46 |
| MS.gene054942 | MS.gene49718 | 0.808146 | 3.57E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene49718 | 0.808725 | 2.69E-50 | -1.69E-46 |
| MS.gene059249 | MS.gene49718 | 0.801657 | 8.12E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene49718 | 0.811644 | 6.32E-51 | -1.69E-46 |
| MS.gene060586 | MS.gene49718 | 0.811541 | 6.65E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene49718 | -0.813958 | 1.97E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002176 | MS.gene49718 | PPI |
| MS.gene002867 | MS.gene49718 | PPI |
| MS.gene047901 | MS.gene49718 | PPI |
| MS.gene047904 | MS.gene49718 | PPI |
| MS.gene49718 | MS.gene047083 | PPI |
| MS.gene49718 | MS.gene93193 | PPI |
| MS.gene49718 | MS.gene002865 | PPI |
| MS.gene49718 | MS.gene01827 | PPI |
| MS.gene49718 | MS.gene99533 | PPI |
| MS.gene071947 | MS.gene49718 | PPI |
| MS.gene002174 | MS.gene49718 | PPI |
| MS.gene026126 | MS.gene49718 | PPI |
| MS.gene49718 | MS.gene84485 | PPI |
| MS.gene49718 | MS.gene00895 | PPI |
| MS.gene49718 | MS.gene01143 | PPI |
| MS.gene01146 | MS.gene49718 | PPI |
| MS.gene01838 | MS.gene49718 | PPI |
| MS.gene071949 | MS.gene49718 | PPI |
| MS.gene00893 | MS.gene49718 | PPI |
| MS.gene49718 | MS.gene026637 | PPI |
| MS.gene49718 | MS.gene047900 | PPI |
| MS.gene49718 | MS.gene002864 | PPI |
| MS.gene49718 | MS.gene00896 | PPI |
| MS.gene33602 | MS.gene49718 | PPI |
| MS.gene63019 | MS.gene49718 | PPI |
| MS.gene49718 | MS.gene75229 | PPI |
| MS.gene01826 | MS.gene49718 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49718.t1 | MTR_8g094760 | 96.279 | 645 | 19 | 2 | 1 | 645 | 1 | 640 | 0.0 | 1242 |
| MS.gene49718.t1 | MTR_8g094760 | 96.059 | 609 | 19 | 2 | 37 | 645 | 25 | 628 | 0.0 | 1167 |
| MS.gene49718.t1 | MTR_3g096990 | 60.932 | 622 | 201 | 6 | 36 | 636 | 29 | 629 | 0.0 | 675 |
| MS.gene49718.t1 | MTR_3g096990 | 61.265 | 506 | 152 | 5 | 36 | 523 | 29 | 508 | 0.0 | 535 |
| MS.gene49718.t1 | MTR_3g096990 | 56.371 | 259 | 106 | 3 | 384 | 636 | 466 | 723 | 1.83e-77 | 261 |
| MS.gene49718.t1 | MTR_1g030010 | 46.053 | 456 | 210 | 4 | 73 | 513 | 145 | 579 | 2.05e-110 | 352 |
| MS.gene49718.t1 | MTR_1g030010 | 35.981 | 214 | 76 | 6 | 467 | 643 | 638 | 827 | 2.52e-20 | 96.3 |
| MS.gene49718.t1 | MTR_3g113290 | 38.750 | 320 | 147 | 6 | 1 | 273 | 1 | 318 | 2.49e-43 | 168 |
| MS.gene49718.t1 | MTR_1g024095 | 37.954 | 303 | 154 | 6 | 1 | 273 | 1 | 299 | 9.43e-40 | 157 |
| MS.gene49718.t1 | MTR_1g024095 | 37.954 | 303 | 154 | 6 | 1 | 273 | 1 | 299 | 1.05e-39 | 157 |
| MS.gene49718.t1 | MTR_5g021810 | 35.410 | 305 | 160 | 6 | 1 | 273 | 1 | 300 | 5.75e-39 | 154 |
| MS.gene49718.t1 | MTR_5g021810 | 35.390 | 308 | 155 | 6 | 1 | 273 | 1 | 299 | 1.25e-38 | 152 |
| MS.gene49718.t1 | MTR_4g094848 | 37.075 | 294 | 117 | 7 | 1 | 265 | 1 | 255 | 2.21e-36 | 146 |
| MS.gene49718.t1 | MTR_5g016830 | 32.987 | 385 | 184 | 12 | 1 | 357 | 1 | 339 | 7.15e-34 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49718.t1 | AT3G05270 | 42.530 | 656 | 260 | 10 | 1 | 580 | 1 | 615 | 1.12e-137 | 416 |
| MS.gene49718.t1 | AT3G05270 | 42.530 | 656 | 260 | 10 | 1 | 580 | 1 | 615 | 1.12e-137 | 416 |
| MS.gene49718.t1 | AT3G05270 | 42.530 | 656 | 260 | 10 | 1 | 580 | 1 | 615 | 1.12e-137 | 416 |
| MS.gene49718.t1 | AT1G21810 | 37.345 | 565 | 253 | 14 | 86 | 584 | 13 | 542 | 2.32e-78 | 261 |
| MS.gene49718.t1 | AT1G21810 | 28.826 | 281 | 136 | 8 | 386 | 640 | 381 | 623 | 4.82e-13 | 72.8 |
| MS.gene49718.t1 | AT1G21810 | 37.345 | 565 | 253 | 14 | 86 | 584 | 13 | 542 | 2.32e-78 | 261 |
| MS.gene49718.t1 | AT1G21810 | 28.826 | 281 | 136 | 8 | 386 | 640 | 381 | 623 | 4.82e-13 | 72.8 |
| MS.gene49718.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 28 | 314 | 3.13e-75 | 253 |
| MS.gene49718.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 28 | 314 | 4.45e-74 | 253 |
| MS.gene49718.t1 | AT1G77580 | 32.168 | 286 | 139 | 6 | 380 | 639 | 482 | 738 | 9.37e-20 | 94.4 |
| MS.gene49718.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 62 | 348 | 6.77e-74 | 253 |
| MS.gene49718.t1 | AT1G77580 | 32.168 | 286 | 139 | 6 | 380 | 639 | 516 | 772 | 8.37e-20 | 94.7 |
| MS.gene49718.t1 | AT1G77580 | 47.500 | 320 | 134 | 5 | 72 | 390 | 62 | 348 | 6.77e-74 | 253 |
| MS.gene49718.t1 | AT1G77580 | 32.168 | 286 | 139 | 6 | 380 | 639 | 516 | 772 | 8.37e-20 | 94.7 |
| MS.gene49718.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene49718.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene49718.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene49718.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene49718.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene49718.t1 | AT1G19835 | 38.333 | 300 | 147 | 5 | 1 | 273 | 1 | 289 | 2.37e-46 | 177 |
| MS.gene49718.t1 | AT1G21810 | 33.411 | 431 | 209 | 11 | 218 | 584 | 3 | 419 | 9.98e-41 | 155 |
| MS.gene49718.t1 | AT1G21810 | 28.826 | 281 | 136 | 8 | 386 | 640 | 258 | 500 | 4.00e-13 | 72.8 |
| MS.gene49718.t1 | AT1G47900 | 33.626 | 342 | 159 | 6 | 1 | 275 | 1 | 341 | 1.44e-38 | 153 |
| MS.gene49718.t1 | AT1G47900 | 33.626 | 342 | 159 | 6 | 1 | 275 | 1 | 341 | 1.51e-38 | 153 |
| MS.gene49718.t1 | AT1G47900 | 33.626 | 342 | 159 | 6 | 1 | 275 | 1 | 341 | 1.51e-38 | 153 |
| MS.gene49718.t1 | AT4G36120 | 36.545 | 301 | 161 | 4 | 1 | 273 | 1 | 299 | 1.63e-37 | 150 |
| MS.gene49718.t1 | AT4G36120 | 36.545 | 301 | 161 | 4 | 1 | 273 | 1 | 299 | 1.63e-37 | 150 |
| MS.gene49718.t1 | AT2G23360 | 32.095 | 296 | 134 | 9 | 1 | 273 | 1 | 252 | 2.24e-22 | 102 |
Find 106 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATCTCCTTCTTTGTTT+TGG | 0.200345 | 4.4:-7900511 | None:intergenic |
| CTGCTCACACTCTTGCTTCT+TGG | 0.211444 | 4.4:-7901534 | None:intergenic |
| TCTCTCAAGTTCGAATCTTC+TGG | 0.215588 | 4.4:-7899650 | None:intergenic |
| AACAGCTAGTAAGCAAAATT+TGG | 0.251696 | 4.4:+7899864 | MS.gene49718:CDS |
| CTGCTTTACCATGTCTTCTT+TGG | 0.253352 | 4.4:-7898939 | None:intergenic |
| TTCAAGCTTAGCAACCTTCT+TGG | 0.263795 | 4.4:-7899893 | None:intergenic |
| CGGCTTCCACTTTCTGTATC+TGG | 0.277252 | 4.4:-7900204 | None:intergenic |
| TGAGTTTATTGAATCTCTTT+TGG | 0.286597 | 4.4:-7901466 | None:intergenic |
| GGAAAAGAAGCTGGAGAAAA+TGG | 0.291680 | 4.4:+7900323 | MS.gene49718:CDS |
| CTGATTTCTCGAGCTGCATT+TGG | 0.306496 | 4.4:-7900386 | None:intergenic |
| AGTGGAAGCCGTTATGTTAA+TGG | 0.328560 | 4.4:+7900216 | MS.gene49718:CDS |
| ATTCTTGAATTGATCAAATT+CGG | 0.336313 | 4.4:-7900091 | None:intergenic |
| GAGAAAAGCCGTAATGGATT+TGG | 0.355781 | 4.4:+7901501 | MS.gene49718:CDS |
| GACTTGAGGAACTAGAATTC+AGG | 0.356240 | 4.4:+7899806 | MS.gene49718:CDS |
| GGTGTACTAACTTCTTCAAT+TGG | 0.366789 | 4.4:-7898839 | None:intergenic |
| CCAGGCGAGACGGAGAGTTC+AGG | 0.368157 | 4.4:+7898018 | MS.gene49718:CDS |
| CATTTAATGTGAATGATAAT+AGG | 0.372447 | 4.4:+7899953 | MS.gene49718:CDS |
| AGTTATTTGCCACAGCTTCA+TGG | 0.375858 | 4.4:-7899612 | None:intergenic |
| GATTGAAAAGAATGCCGAAT+TGG | 0.383971 | 4.4:+7900302 | MS.gene49718:CDS |
| AGGTACAATGGAAGCTGAAA+TGG | 0.392441 | 4.4:+7900272 | MS.gene49718:CDS |
| CCTGAACTCTCCGTCTCGCC+TGG | 0.392760 | 4.4:-7898018 | None:intergenic |
| GCTCTTGCACTTCTCTGGCT+TGG | 0.397210 | 4.4:-7899582 | None:intergenic |
| ACACAACAAAGTCCCCAAAA+AGG | 0.401435 | 4.4:+7901402 | MS.gene49718:CDS |
| GAATCTCTTCCTCCAATGAA+TGG | 0.402374 | 4.4:-7900587 | None:intergenic |
| TACTAGCTGTTTCAGCAGCT+TGG | 0.405239 | 4.4:-7899852 | None:intergenic |
| GGTGACTAACTCGGTCTTCA+AGG | 0.409043 | 4.4:-7899522 | None:intergenic |
| CGAATTAGCTGCAGCTCTGT+TGG | 0.410377 | 4.4:+7898907 | MS.gene49718:CDS |
| TGAACTTACCAAATCCATTA+CGG | 0.432010 | 4.4:-7901509 | None:intergenic |
| TCGCGATTTGAAGTCAAAAC+AGG | 0.434769 | 4.4:+7900737 | MS.gene49718:CDS |
| TTCAATCAAGAGCAGGAAGT+TGG | 0.455060 | 4.4:+7900638 | MS.gene49718:CDS |
| ATCTGAAATGTTATCTGTAA+AGG | 0.458369 | 4.4:-7900007 | None:intergenic |
| CTAACTTCTTCAATTGGTGC+AGG | 0.462359 | 4.4:-7898833 | None:intergenic |
| ACCGAGTTAGTCACCTTGAT+GGG | 0.462981 | 4.4:+7899530 | MS.gene49718:CDS |
| TGGACAGGAGGAGTTGGTTA+TGG | 0.464689 | 4.4:+7897971 | MS.gene49718:CDS |
| GTTGAAGTCTCTTGCAACAT+TGG | 0.467526 | 4.4:+7901326 | MS.gene49718:CDS |
| CATGGATGATTTCCTTGAGA+TGG | 0.470382 | 4.4:+7900164 | MS.gene49718:CDS |
| GCTGCCTCATACACTCTTTG+AGG | 0.477884 | 4.4:-7899555 | None:intergenic |
| GATAAGAGCAGCAGAATTGA+AGG | 0.478240 | 4.4:+7900416 | MS.gene49718:CDS |
| TGTTAATGGAGGACGAGTAT+TGG | 0.478665 | 4.4:+7900230 | MS.gene49718:CDS |
| GAGACTTGATGCTGTGGAGA+AGG | 0.483646 | 4.4:+7899750 | MS.gene49718:CDS |
| CTGCTTTCCAAGAGATGCAA+TGG | 0.484799 | 4.4:-7901304 | None:intergenic |
| GACCGAGTTAGTCACCTTGA+TGG | 0.485370 | 4.4:+7899529 | MS.gene49718:CDS |
| TGCCGAATTGGAAAAGAAGC+TGG | 0.488229 | 4.4:+7900314 | MS.gene49718:CDS |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.493553 | 4.4:+7898971 | MS.gene49718:CDS |
| GTATTGGATCAATCTATTGT+TGG | 0.494117 | 4.4:+7900246 | MS.gene49718:CDS |
| AAGTCATCGGAGAAAAGTCC+AGG | 0.496717 | 4.4:+7898000 | MS.gene49718:CDS |
| GGCAAATAACTCACATGACT+CGG | 0.497487 | 4.4:+7899624 | MS.gene49718:CDS |
| GGTGATAGAGTAGCTTGGAT+TGG | 0.502409 | 4.4:-7898794 | None:intergenic |
| CTGCCTCATACACTCTTTGA+GGG | 0.505138 | 4.4:-7899554 | None:intergenic |
| GAAAGAAACCAAAACAAAGA+AGG | 0.505936 | 4.4:+7900503 | MS.gene49718:CDS |
| AGCTCGAGAAATCAGAGAAT+CGG | 0.507513 | 4.4:+7900394 | MS.gene49718:CDS |
| CAAGAAGCAAGAGTGTGAGC+AGG | 0.509068 | 4.4:+7901535 | MS.gene49718:CDS |
| GGGCCCTCAAAGAGTGTATG+AGG | 0.511371 | 4.4:+7899551 | MS.gene49718:CDS |
| AGAATTCAGGATTGCAGAGA+GGG | 0.513958 | 4.4:+7899819 | MS.gene49718:CDS |
| ACTTCACAAGTTAACTCCAT+AGG | 0.515278 | 4.4:-7901378 | None:intergenic |
| AGATAAACTTGATGTAGAGA+TGG | 0.518264 | 4.4:+7900350 | MS.gene49718:CDS |
| TCAGGACAAAGAACTTGCAT+TGG | 0.521630 | 4.4:+7901251 | MS.gene49718:intron |
| CTCAAGTTCAGCAAGATGCC+AGG | 0.522890 | 4.4:+7900691 | MS.gene49718:CDS |
| ATGATTTCCTTGAGATGGAA+AGG | 0.523962 | 4.4:+7900169 | MS.gene49718:CDS |
| ACTCATGAGAAAAGCCGTAA+TGG | 0.524338 | 4.4:+7901495 | MS.gene49718:CDS |
| ATTGGAGGAAGAGATTCAAA+AGG | 0.526916 | 4.4:+7900593 | MS.gene49718:CDS |
| GATAAACTTGATGTAGAGAT+GGG | 0.528053 | 4.4:+7900351 | MS.gene49718:CDS |
| TTCAACTGAGATCAATCTCA+TGG | 0.530613 | 4.4:+7900146 | MS.gene49718:CDS |
| ATCAAGTCTCCTCTGAAGAT+CGG | 0.535787 | 4.4:-7899737 | None:intergenic |
| TTTAAATGGACAGGAGGAGT+TGG | 0.537649 | 4.4:+7897965 | None:intergenic |
| AAGAAGCAAGAGTGTGAGCA+GGG | 0.538699 | 4.4:+7901536 | MS.gene49718:CDS |
| CTCGTCCTCCATTAACATAA+CGG | 0.539926 | 4.4:-7900224 | None:intergenic |
| TTTACAGATAACATTTCAGA+TGG | 0.540438 | 4.4:+7900009 | MS.gene49718:CDS |
| GAGAAAAGTTGCTGAGCTTG+AGG | 0.541808 | 4.4:+7899669 | MS.gene49718:CDS |
| TGATTCAGACAACAGCCCTA+TGG | 0.543080 | 4.4:+7901362 | MS.gene49718:CDS |
| CTTCACAAGTTAACTCCATA+GGG | 0.543569 | 4.4:-7901377 | None:intergenic |
| GCAGGCTTAGATGTGACCTC+TGG | 0.546710 | 4.4:-7898815 | None:intergenic |
| CTGAGAATTCAATCAAGAGC+AGG | 0.555581 | 4.4:+7900631 | MS.gene49718:CDS |
| CAGCAAGCCTTTCCATCTCA+AGG | 0.558005 | 4.4:-7900176 | None:intergenic |
| ACTCTTTGAGGGCCCCATCA+AGG | 0.563213 | 4.4:-7899543 | None:intergenic |
| ACAGATAACATTTCAGATGG+TGG | 0.563408 | 4.4:+7900012 | MS.gene49718:CDS |
| AAATTTGGAGAGCACCAAGA+AGG | 0.563758 | 4.4:+7899879 | MS.gene49718:CDS |
| GATCAATCTATTGTTGGTCA+AGG | 0.566842 | 4.4:+7900252 | MS.gene49718:CDS |
| CCCCATCAAGGTGACTAACT+CGG | 0.567534 | 4.4:-7899531 | None:intergenic |
| CTCAATATAAATTGAAGATG+CGG | 0.569123 | 4.4:-7899983 | None:intergenic |
| AATCAAGAGCAGGAAGTTGG+AGG | 0.569457 | 4.4:+7900641 | MS.gene49718:CDS |
| GCTTTGCCAGATACAGAAAG+TGG | 0.578039 | 4.4:+7900198 | MS.gene49718:CDS |
| GGAGAAAAGTCCAGGCGAGA+CGG | 0.589443 | 4.4:+7898008 | MS.gene49718:CDS |
| TATTGTTGGTCAAGGTACAA+TGG | 0.590943 | 4.4:+7900260 | MS.gene49718:CDS |
| ATCAAGAGCAGGAAGTTGGA+GGG | 0.592927 | 4.4:+7900642 | MS.gene49718:CDS |
| TAGAATTCAGGATTGCAGAG+AGG | 0.594182 | 4.4:+7899818 | MS.gene49718:CDS |
| GCAAATAACTCACATGACTC+GGG | 0.598199 | 4.4:+7899625 | MS.gene49718:CDS |
| TCAGAGGAGACTTGATGCTG+TGG | 0.600308 | 4.4:+7899744 | MS.gene49718:CDS |
| GCTGCAAGACAGAAGAACTC+AGG | 0.602737 | 4.4:+7899499 | MS.gene49718:CDS |
| ACTGAAATTTGCTCAAACTG+AGG | 0.609862 | 4.4:+7900542 | MS.gene49718:CDS |
| CTATTCGCTCCGATCTTCAG+AGG | 0.616299 | 4.4:+7899728 | MS.gene49718:CDS |
| CCTCTGGTGATAGAGTAGCT+TGG | 0.616609 | 4.4:-7898799 | None:intergenic |
| GAACATGAGTCAGAACAGCT+TGG | 0.617775 | 4.4:-7900054 | None:intergenic |
| GCAAAAGATCCATGAAGCTG+TGG | 0.621012 | 4.4:+7899603 | MS.gene49718:CDS |
| GGCTGTTGTCTGAATCAAGT+AGG | 0.621986 | 4.4:-7901356 | None:intergenic |
| AATTAGTGCCAAAGAAGACA+TGG | 0.626226 | 4.4:+7898931 | MS.gene49718:CDS |
| GAGTCATGGATTTCAGTCTA+CGG | 0.630257 | 4.4:-7899924 | None:intergenic |
| CTGGGAGAAGGCTGAAAACG+AGG | 0.637297 | 4.4:+7899450 | MS.gene49718:CDS |
| GTTATGGCGGAGAAAGTCAT+CGG | 0.642989 | 4.4:+7897987 | MS.gene49718:CDS |
| GGAAGCCGTTATGTTAATGG+AGG | 0.654516 | 4.4:+7900219 | MS.gene49718:CDS |
| TGAGCTGCAATCTCGACTTG+AGG | 0.664109 | 4.4:+7899792 | MS.gene49718:CDS |
| AGATGCCAGGACTTTGCACA+AGG | 0.664420 | 4.4:+7900704 | MS.gene49718:CDS |
| CCGAGTTAGTCACCTTGATG+GGG | 0.664423 | 4.4:+7899531 | MS.gene49718:CDS |
| ACAGGAGGAGTTGGTTATGG+CGG | 0.665341 | 4.4:+7897974 | MS.gene49718:CDS |
| AAAGAAGCTGGAGAAAATGG+AGG | 0.684854 | 4.4:+7900326 | MS.gene49718:CDS |
| CCAAGCTACTCTATCACCAG+AGG | 0.697015 | 4.4:+7898799 | MS.gene49718:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTGTTTTTCATTTTATTT+AGG | + | chr4.4:7899427-7899446 | MS.gene49718:intron | 15.0% |
| !! | AATGCAATTTAATTGTAGTT+TGG | - | chr4.4:7901019-7901038 | None:intergenic | 20.0% |
| !! | ATCATAATCTTCTAACTTAA+TGG | + | chr4.4:7899364-7899383 | MS.gene49718:intron | 20.0% |
| !! | ATTAAATTGCATTTGTAGTT+TGG | + | chr4.4:7901026-7901045 | MS.gene49718:intron | 20.0% |
| !! | ATTCTTGAATTGATCAAATT+CGG | - | chr4.4:7900094-7900113 | None:intergenic | 20.0% |
| !! | ATTGCAAAATACATTAAACA+CGG | - | chr4.4:7900802-7900821 | None:intergenic | 20.0% |
| !! | CATTTAATGTGAATGATAAT+AGG | + | chr4.4:7899953-7899972 | MS.gene49718:CDS | 20.0% |
| !! | GAGATGAAAAAAAAAATTGA+GGG | + | chr4.4:7898296-7898315 | MS.gene49718:intron | 20.0% |
| !! | TAATCTACGAATTAAATATC+TGG | - | chr4.4:7899012-7899031 | None:intergenic | 20.0% |
| !! | TCATAATCTTCTAACTTAAT+GGG | + | chr4.4:7899365-7899384 | MS.gene49718:intron | 20.0% |
| !!! | ACCTTCTTCTTTATATTTTT+TGG | - | chr4.4:7898864-7898883 | None:intergenic | 20.0% |
| !!! | ATATCTTTTCATATATACCT+TGG | - | chr4.4:7899408-7899427 | None:intergenic | 20.0% |
| !!! | CAGATACTAAGTTTTTTATA+TGG | - | chr4.4:7901226-7901245 | None:intergenic | 20.0% |
| !!! | CCTTCTTCTTTATATTTTTT+GGG | - | chr4.4:7898863-7898882 | None:intergenic | 20.0% |
| !!! | CTATTTTCATCTATAATAAC+AGG | + | chr4.4:7898473-7898492 | MS.gene49718:intron | 20.0% |
| !!! | TTTTTCATTTTATTTAGGCT+GGG | + | chr4.4:7899432-7899451 | MS.gene49718:intron | 20.0% |
| !!! | TTTTTTTTTTCTAAGCATTC+AGG | + | chr4.4:7898678-7898697 | MS.gene49718:intron | 20.0% |
| ! | AAAATTAATTACAGCTGCAA+AGG | - | chr4.4:7899153-7899172 | None:intergenic | 25.0% |
| ! | AATCAGATTCATCACATTAT+TGG | - | chr4.4:7898737-7898756 | None:intergenic | 25.0% |
| ! | ATTGTTTCAACCAACAAAAA+AGG | - | chr4.4:7900892-7900911 | None:intergenic | 25.0% |
| ! | CCCAAAAAATATAAAGAAGA+AGG | + | chr4.4:7898860-7898879 | MS.gene49718:CDS | 25.0% |
| ! | CTCAATATAAATTGAAGATG+CGG | - | chr4.4:7899986-7900005 | None:intergenic | 25.0% |
| ! | GAATGTGTACTAGATAATAT+GGG | + | chr4.4:7898225-7898244 | MS.gene49718:intron | 25.0% |
| ! | GATTTCAAAAATCCATTCAT+TGG | + | chr4.4:7900575-7900594 | MS.gene49718:CDS | 25.0% |
| ! | GGAGATGAAAAAAAAAATTG+AGG | + | chr4.4:7898295-7898314 | MS.gene49718:intron | 25.0% |
| ! | GTTAAGTAATCATATTGCAT+TGG | + | chr4.4:7901191-7901210 | MS.gene49718:intron | 25.0% |
| ! | TCATAAAAAGTAATGCTAGA+AGG | - | chr4.4:7900836-7900855 | None:intergenic | 25.0% |
| ! | TTCAAGAATAAAAAGACTAC+TGG | + | chr4.4:7900105-7900124 | MS.gene49718:CDS | 25.0% |
| ! | TTTAATTGTAGTTTGGACTA+TGG | - | chr4.4:7901012-7901031 | None:intergenic | 25.0% |
| ! | TTTACAGATAACATTTCAGA+TGG | + | chr4.4:7900009-7900028 | MS.gene49718:CDS | 25.0% |
| !! | ATCTGAAATGTTATCTGTAA+AGG | - | chr4.4:7900010-7900029 | None:intergenic | 25.0% |
| !! | ATTAAATGTTTTACGAGTCA+TGG | - | chr4.4:7899941-7899960 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGTGAAAATCT+CGG | + | chr4.4:7898261-7898280 | MS.gene49718:intron | 25.0% |
| !! | GAGTTTATTGAATCTCTTTT+GGG | - | chr4.4:7901468-7901487 | None:intergenic | 25.0% |
| !! | TGAGTTTATTGAATCTCTTT+TGG | - | chr4.4:7901469-7901488 | None:intergenic | 25.0% |
| !!! | AAGAAAGTGTCTTTACTTTA+AGG | + | chr4.4:7898383-7898402 | MS.gene49718:intron | 25.0% |
| !!! | AGAAAGTGTCTTTACTTTAA+GGG | + | chr4.4:7898384-7898403 | MS.gene49718:intron | 25.0% |
| !!! | ATTCTTCAATCCTTTTTTGT+TGG | + | chr4.4:7900879-7900898 | MS.gene49718:intron | 25.0% |
| !!! | GTTTTTCATTTTATTTAGGC+TGG | + | chr4.4:7899431-7899450 | MS.gene49718:intron | 25.0% |
| !!! | TCAGTTTGCTAATACTTATT+TGG | + | chr4.4:7900760-7900779 | MS.gene49718:intron | 25.0% |
| AAAAACTTATCTACCAAACC+AGG | - | chr4.4:7899113-7899132 | None:intergenic | 30.0% | |
| AAAACTTATCTACCAAACCA+GGG | - | chr4.4:7899112-7899131 | None:intergenic | 30.0% | |
| AAACTATCTCAAGTTACAGT+AGG | - | chr4.4:7898525-7898544 | None:intergenic | 30.0% | |
| AACAGCTAGTAAGCAAAATT+TGG | + | chr4.4:7899864-7899883 | MS.gene49718:CDS | 30.0% | |
| AACATACATGCAGTCAAAAA+TGG | - | chr4.4:7898119-7898138 | None:intergenic | 30.0% | |
| AACTATCTCAAGTTACAGTA+GGG | - | chr4.4:7898524-7898543 | None:intergenic | 30.0% | |
| AACTGCTATTACTGGTATTT+AGG | - | chr4.4:7901174-7901193 | None:intergenic | 30.0% | |
| AAGGTAAGAAAAATGAACCA+TGG | - | chr4.4:7899327-7899346 | None:intergenic | 30.0% | |
| AGATAAACTTGATGTAGAGA+TGG | + | chr4.4:7900350-7900369 | MS.gene49718:CDS | 30.0% | |
| CATCTATAATAACAGGATAC+CGG | + | chr4.4:7898480-7898499 | MS.gene49718:intron | 30.0% | |
| GAAAGAAACCAAAACAAAGA+AGG | + | chr4.4:7900503-7900522 | MS.gene49718:CDS | 30.0% | |
| GAAGATTATGATGATAGTCA+TGG | - | chr4.4:7899356-7899375 | None:intergenic | 30.0% | |
| GATAAACTTGATGTAGAGAT+GGG | + | chr4.4:7900351-7900370 | MS.gene49718:CDS | 30.0% | |
| GATTACTTAACTGCTATTAC+TGG | - | chr4.4:7901182-7901201 | None:intergenic | 30.0% | |
| GGAATGTGTACTAGATAATA+TGG | + | chr4.4:7898224-7898243 | MS.gene49718:intron | 30.0% | |
| GTATATCAATAAATTTGCCC+TGG | + | chr4.4:7899092-7899111 | MS.gene49718:intron | 30.0% | |
| GTATTGGATCAATCTATTGT+TGG | + | chr4.4:7900246-7900265 | MS.gene49718:CDS | 30.0% | |
| TATGTTGTAATGAATCTGCT+CGG | + | chr4.4:7898703-7898722 | MS.gene49718:intron | 30.0% | |
| TCATATAAACAGCAACACAA+AGG | - | chr4.4:7901087-7901106 | None:intergenic | 30.0% | |
| TGAAAACAATGGTTATTGCT+CGG | + | chr4.4:7898563-7898582 | MS.gene49718:intron | 30.0% | |
| TGAACTTACCAAATCCATTA+CGG | - | chr4.4:7901512-7901531 | None:intergenic | 30.0% | |
| TTCAAAAATCCATTCATTGG+AGG | + | chr4.4:7900578-7900597 | MS.gene49718:CDS | 30.0% | |
| TTTCACAGAAGTTTAAACCA+AGG | + | chr4.4:7899388-7899407 | MS.gene49718:intron | 30.0% | |
| ! | AATTTTTCACCTCCTTTTTG+GGG | - | chr4.4:7901417-7901436 | None:intergenic | 30.0% |
| ! | AGAAAGATTTTCTGATGAAC+AGG | + | chr4.4:7898059-7898078 | MS.gene49718:CDS | 30.0% |
| ! | CAATTTTTCACCTCCTTTTT+GGG | - | chr4.4:7901418-7901437 | None:intergenic | 30.0% |
| ! | GAGATAGTTTGTAAATGTCT+AGG | + | chr4.4:7898535-7898554 | MS.gene49718:intron | 30.0% |
| ! | GAGATTTTCACTTGAGAAAA+TGG | - | chr4.4:7898262-7898281 | None:intergenic | 30.0% |
| ! | TCAATTTTTCACCTCCTTTT+TGG | - | chr4.4:7901419-7901438 | None:intergenic | 30.0% |
| !! | AACTATCTCCTTCTTTGTTT+TGG | - | chr4.4:7900514-7900533 | None:intergenic | 30.0% |
| !! | AACTTAGTATCTGCTATTTC+AGG | + | chr4.4:7901233-7901252 | MS.gene49718:intron | 30.0% |
| !! | ATGGTTCATTTTTCTTACCT+TGG | + | chr4.4:7899326-7899345 | MS.gene49718:intron | 30.0% |
| !! | GAAAGTGTCTTTACTTTAAG+GGG | + | chr4.4:7898385-7898404 | MS.gene49718:intron | 30.0% |
| !! | TGGTTCATTTTTCTTACCTT+GGG | + | chr4.4:7899327-7899346 | MS.gene49718:intron | 30.0% |
| AAACAGCAACACAAAGGAAT+TGG | - | chr4.4:7901081-7901100 | None:intergenic | 35.0% | |
| AACAGCAACACAAAGGAATT+GGG | - | chr4.4:7901080-7901099 | None:intergenic | 35.0% | |
| AATTAGTGCCAAAGAAGACA+TGG | + | chr4.4:7898931-7898950 | MS.gene49718:CDS | 35.0% | |
| ACAGATAACATTTCAGATGG+TGG | + | chr4.4:7900012-7900031 | MS.gene49718:CDS | 35.0% | |
| ACTTCACAAGTTAACTCCAT+AGG | - | chr4.4:7901381-7901400 | None:intergenic | 35.0% | |
| ATGATTTCCTTGAGATGGAA+AGG | + | chr4.4:7900169-7900188 | MS.gene49718:CDS | 35.0% | |
| ATTGGAGGAAGAGATTCAAA+AGG | + | chr4.4:7900593-7900612 | MS.gene49718:CDS | 35.0% | |
| CAAAAAACCATTGCATCTCT+TGG | + | chr4.4:7901297-7901316 | MS.gene49718:CDS | 35.0% | |
| CTTCACAAGTTAACTCCATA+GGG | - | chr4.4:7901380-7901399 | None:intergenic | 35.0% | |
| GATCAATCTATTGTTGGTCA+AGG | + | chr4.4:7900252-7900271 | MS.gene49718:CDS | 35.0% | |
| GATTGAAAAGAATGCCGAAT+TGG | + | chr4.4:7900302-7900321 | MS.gene49718:CDS | 35.0% | |
| GGTGTACTAACTTCTTCAAT+TGG | - | chr4.4:7898842-7898861 | None:intergenic | 35.0% | |
| TATTGTTGGTCAAGGTACAA+TGG | + | chr4.4:7900260-7900279 | MS.gene49718:CDS | 35.0% | |
| TCAATAAATTTGCCCTGGTT+TGG | + | chr4.4:7899097-7899116 | MS.gene49718:intron | 35.0% | |
| TCTAGGCTACATGAAAACAA+TGG | + | chr4.4:7898552-7898571 | MS.gene49718:intron | 35.0% | |
| TCTTTCACAATTCAGTCTTG+TGG | + | chr4.4:7898202-7898221 | MS.gene49718:intron | 35.0% | |
| TGTCTCAGGTATTTACTGTT+TGG | + | chr4.4:7898985-7899004 | MS.gene49718:intron | 35.0% | |
| TTCAACTGAGATCAATCTCA+TGG | + | chr4.4:7900146-7900165 | MS.gene49718:CDS | 35.0% | |
| TTTGTTGCAATGAATCTGCT+CGG | + | chr4.4:7898632-7898651 | MS.gene49718:intron | 35.0% | |
| ! | AAGATTTTCTGATGAACAGG+TGG | + | chr4.4:7898062-7898081 | MS.gene49718:intron | 35.0% |
| ! | ACTGAAATTTGCTCAAACTG+AGG | + | chr4.4:7900542-7900561 | MS.gene49718:CDS | 35.0% |
| ! | CAATTTTACTCACTGTCACA+TGG | + | chr4.4:7898154-7898173 | MS.gene49718:intron | 35.0% |
| ! | CTTTCACAATTCAGTCTTGT+GGG | + | chr4.4:7898203-7898222 | MS.gene49718:intron | 35.0% |
| !! | ATTTTATTTAGGCTGGGAGA+AGG | + | chr4.4:7899438-7899457 | MS.gene49718:intron | 35.0% |
| !!! | AGTTCGCTTTTTAAGCATTC+AGG | + | chr4.4:7898607-7898626 | MS.gene49718:intron | 35.0% |
| !!! | CAAGAGATGCAATGGTTTTT+TGG | - | chr4.4:7901299-7901318 | None:intergenic | 35.0% |
| AAAATCTCGGTGGTTGTTGA+AGG | + | chr4.4:7898274-7898293 | MS.gene49718:intron | 40.0% | |
| AAAGAAGCTGGAGAAAATGG+AGG | + | chr4.4:7900326-7900345 | MS.gene49718:CDS | 40.0% | |
| ACACAACAAAGTCCCCAAAA+AGG | + | chr4.4:7901402-7901421 | MS.gene49718:CDS | 40.0% | |
| ACAGCAACACAAAGGAATTG+GGG | - | chr4.4:7901079-7901098 | None:intergenic | 40.0% | |
| ACTCATGAGAAAAGCCGTAA+TGG | + | chr4.4:7901495-7901514 | MS.gene49718:CDS | 40.0% | |
| AGAATTCAGGATTGCAGAGA+GGG | + | chr4.4:7899819-7899838 | MS.gene49718:CDS | 40.0% | |
| AGCTCGAGAAATCAGAGAAT+CGG | + | chr4.4:7900394-7900413 | MS.gene49718:CDS | 40.0% | |
| AGGTACAATGGAAGCTGAAA+TGG | + | chr4.4:7900272-7900291 | MS.gene49718:CDS | 40.0% | |
| AGTGGAAGCCGTTATGTTAA+TGG | + | chr4.4:7900216-7900235 | MS.gene49718:CDS | 40.0% | |
| AGTTATTTGCCACAGCTTCA+TGG | - | chr4.4:7899615-7899634 | None:intergenic | 40.0% | |
| ATACCTTCACAGTTACAGCA+TGG | - | chr4.4:7898772-7898791 | None:intergenic | 40.0% | |
| CATGGATGATTTCCTTGAGA+TGG | + | chr4.4:7900164-7900183 | MS.gene49718:CDS | 40.0% | |
| CTAACTTCTTCAATTGGTGC+AGG | - | chr4.4:7898836-7898855 | None:intergenic | 40.0% | |
| CTCGTCCTCCATTAACATAA+CGG | - | chr4.4:7900227-7900246 | None:intergenic | 40.0% | |
| CTGAGAATTCAATCAAGAGC+AGG | + | chr4.4:7900631-7900650 | MS.gene49718:CDS | 40.0% | |
| CTGCTTTACCATGTCTTCTT+TGG | - | chr4.4:7898942-7898961 | None:intergenic | 40.0% | |
| GAATCTCTTCCTCCAATGAA+TGG | - | chr4.4:7900590-7900609 | None:intergenic | 40.0% | |
| GACAACGAGAGCAATTATTC+CGG | - | chr4.4:7898502-7898521 | None:intergenic | 40.0% | |
| GACTTGAGGAACTAGAATTC+AGG | + | chr4.4:7899806-7899825 | MS.gene49718:CDS | 40.0% | |
| GAGTCATGGATTTCAGTCTA+CGG | - | chr4.4:7899927-7899946 | None:intergenic | 40.0% | |
| GATAAGAGCAGCAGAATTGA+AGG | + | chr4.4:7900416-7900435 | MS.gene49718:CDS | 40.0% | |
| GCAAATAACTCACATGACTC+GGG | + | chr4.4:7899625-7899644 | MS.gene49718:CDS | 40.0% | |
| GGAAAAGAAGCTGGAGAAAA+TGG | + | chr4.4:7900323-7900342 | MS.gene49718:CDS | 40.0% | |
| GGCAAATAACTCACATGACT+CGG | + | chr4.4:7899624-7899643 | MS.gene49718:CDS | 40.0% | |
| GTTGAAGTCTCTTGCAACAT+TGG | + | chr4.4:7901326-7901345 | MS.gene49718:CDS | 40.0% | |
| TACCTTCACAGTTACAGCAT+GGG | - | chr4.4:7898771-7898790 | None:intergenic | 40.0% | |
| TACTCACTGTCACATGGTTT+GGG | + | chr4.4:7898160-7898179 | MS.gene49718:intron | 40.0% | |
| TAGAATTCAGGATTGCAGAG+AGG | + | chr4.4:7899818-7899837 | MS.gene49718:CDS | 40.0% | |
| TCAGGACAAAGAACTTGCAT+TGG | + | chr4.4:7901251-7901270 | MS.gene49718:intron | 40.0% | |
| TCTCTCAAGTTCGAATCTTC+TGG | - | chr4.4:7899653-7899672 | None:intergenic | 40.0% | |
| TGCATTTGTAGTTTGGACTC+TGG | + | chr4.4:7901033-7901052 | MS.gene49718:intron | 40.0% | |
| TGTTAATGGAGGACGAGTAT+TGG | + | chr4.4:7900230-7900249 | MS.gene49718:CDS | 40.0% | |
| TGTTGCAGACATTGTGAAAC+AGG | + | chr4.4:7898356-7898375 | MS.gene49718:intron | 40.0% | |
| TTACTCACTGTCACATGGTT+TGG | + | chr4.4:7898159-7898178 | MS.gene49718:intron | 40.0% | |
| TTCAAGCTTAGCAACCTTCT+TGG | - | chr4.4:7899896-7899915 | None:intergenic | 40.0% | |
| TTCAATCAAGAGCAGGAAGT+TGG | + | chr4.4:7900638-7900657 | MS.gene49718:CDS | 40.0% | |
| TTCTCAAGTGAAAATCTCGG+TGG | + | chr4.4:7898264-7898283 | MS.gene49718:intron | 40.0% | |
| ! | AAAAATTGAGGGCGTGAATG+TGG | + | chr4.4:7898307-7898326 | MS.gene49718:intron | 40.0% |
| ! | ATCAAGTCTCCTCTGAAGAT+CGG | - | chr4.4:7899740-7899759 | None:intergenic | 40.0% |
| ! | ATTTTCCTTGTGCAAAGTCC+TGG | - | chr4.4:7900712-7900731 | None:intergenic | 40.0% |
| ! | CTCCAGCTTCTTTTCCAATT+CGG | - | chr4.4:7900319-7900338 | None:intergenic | 40.0% |
| ! | TCGCGATTTGAAGTCAAAAC+AGG | + | chr4.4:7900737-7900756 | MS.gene49718:CDS | 40.0% |
| ! | TGCTTCTTTTTGCTTGTCCA+TGG | + | chr4.4:7899307-7899326 | MS.gene49718:intron | 40.0% |
| !! | AAATTTGGAGAGCACCAAGA+AGG | + | chr4.4:7899879-7899898 | MS.gene49718:CDS | 40.0% |
| !! | GAGAAAAGCCGTAATGGATT+TGG | + | chr4.4:7901501-7901520 | MS.gene49718:CDS | 40.0% |
| AAGTCATCGGAGAAAAGTCC+AGG | + | chr4.4:7898000-7898019 | MS.gene49718:CDS | 45.0% | |
| AATCAAGAGCAGGAAGTTGG+AGG | + | chr4.4:7900641-7900660 | MS.gene49718:CDS | 45.0% | |
| ACCGAGTTAGTCACCTTGAT+GGG | + | chr4.4:7899530-7899549 | MS.gene49718:CDS | 45.0% | |
| ATCAAGAGCAGGAAGTTGGA+GGG | + | chr4.4:7900642-7900661 | MS.gene49718:CDS | 45.0% | |
| ATGATAGTCATGGCTTCCCA+AGG | - | chr4.4:7899346-7899365 | None:intergenic | 45.0% | |
| CAACAAAGTCCCCAAAAAGG+AGG | + | chr4.4:7901405-7901424 | MS.gene49718:CDS | 45.0% | |
| CAGCAACACAAAGGAATTGG+GGG | - | chr4.4:7901078-7901097 | None:intergenic | 45.0% | |
| CTCGGTCTGCAAATTTCTCA+TGG | + | chr4.4:7898581-7898600 | MS.gene49718:intron | 45.0% | |
| CTGATTTCTCGAGCTGCATT+TGG | - | chr4.4:7900389-7900408 | None:intergenic | 45.0% | |
| CTGCCTCATACACTCTTTGA+GGG | - | chr4.4:7899557-7899576 | None:intergenic | 45.0% | |
| CTGCTTTCCAAGAGATGCAA+TGG | - | chr4.4:7901307-7901326 | None:intergenic | 45.0% | |
| CTTCACAACCATCATGATCC+CGG | + | chr4.4:7899250-7899269 | MS.gene49718:intron | 45.0% | |
| GAACATGAGTCAGAACAGCT+TGG | - | chr4.4:7900057-7900076 | None:intergenic | 45.0% | |
| GAGAAAAGTTGCTGAGCTTG+AGG | + | chr4.4:7899669-7899688 | MS.gene49718:CDS | 45.0% | |
| GCAAAAGATCCATGAAGCTG+TGG | + | chr4.4:7899603-7899622 | MS.gene49718:CDS | 45.0% | |
| GCTTTGCCAGATACAGAAAG+TGG | + | chr4.4:7900198-7900217 | MS.gene49718:CDS | 45.0% | |
| GGAAGCCGTTATGTTAATGG+AGG | + | chr4.4:7900219-7900238 | MS.gene49718:CDS | 45.0% | |
| GGCTGTTGTCTGAATCAAGT+AGG | - | chr4.4:7901359-7901378 | None:intergenic | 45.0% | |
| GGTGATAGAGTAGCTTGGAT+TGG | - | chr4.4:7898797-7898816 | None:intergenic | 45.0% | |
| TCCTAACTCCTAACGTGAAC+CGG | - | chr4.4:7899272-7899291 | None:intergenic | 45.0% | |
| TGATTCAGACAACAGCCCTA+TGG | + | chr4.4:7901362-7901381 | MS.gene49718:CDS | 45.0% | |
| TGCCGAATTGGAAAAGAAGC+TGG | + | chr4.4:7900314-7900333 | MS.gene49718:CDS | 45.0% | |
| TTCCCATGCTGTAACTGTGA+AGG | + | chr4.4:7898766-7898785 | MS.gene49718:intron | 45.0% | |
| ! | AAGAAGCAAGAGTGTGAGCA+GGG | + | chr4.4:7901536-7901555 | MS.gene49718:CDS | 45.0% |
| ! | CTTTTGCTCTTGCACTTCTC+TGG | - | chr4.4:7899590-7899609 | None:intergenic | 45.0% |
| ! | GTTATGGCGGAGAAAGTCAT+CGG | + | chr4.4:7897987-7898006 | MS.gene49718:CDS | 45.0% |
| ! | TACTAGCTGTTTCAGCAGCT+TGG | - | chr4.4:7899855-7899874 | None:intergenic | 45.0% |
| AACGTGAACCGGGATCATGA+TGG | - | chr4.4:7899261-7899280 | None:intergenic | 50.0% | |
| AGATGCCAGGACTTTGCACA+AGG | + | chr4.4:7900704-7900723 | MS.gene49718:CDS | 50.0% | |
| CAGCAAGCCTTTCCATCTCA+AGG | - | chr4.4:7900179-7900198 | None:intergenic | 50.0% | |
| CCAAGCTACTCTATCACCAG+AGG | + | chr4.4:7898799-7898818 | MS.gene49718:CDS | 50.0% | |
| CCCCATCAAGGTGACTAACT+CGG | - | chr4.4:7899534-7899553 | None:intergenic | 50.0% | |
| CCGAGTTAGTCACCTTGATG+GGG | + | chr4.4:7899531-7899550 | MS.gene49718:CDS | 50.0% | |
| CCTAACTCCTAACGTGAACC+GGG | - | chr4.4:7899271-7899290 | None:intergenic | 50.0% | |
| CCTCTGGTGATAGAGTAGCT+TGG | - | chr4.4:7898802-7898821 | None:intergenic | 50.0% | |
| CGAATTAGCTGCAGCTCTGT+TGG | + | chr4.4:7898907-7898926 | MS.gene49718:CDS | 50.0% | |
| CGGCTTCCACTTTCTGTATC+TGG | - | chr4.4:7900207-7900226 | None:intergenic | 50.0% | |
| CTATTCGCTCCGATCTTCAG+AGG | + | chr4.4:7899728-7899747 | MS.gene49718:CDS | 50.0% | |
| CTCAAGTTCAGCAAGATGCC+AGG | + | chr4.4:7900691-7900710 | MS.gene49718:CDS | 50.0% | |
| CTCGGTCTGCACATTCTTCA+TGG | + | chr4.4:7898650-7898669 | MS.gene49718:intron | 50.0% | |
| CTGCTCACACTCTTGCTTCT+TGG | - | chr4.4:7901537-7901556 | None:intergenic | 50.0% | |
| GACCGAGTTAGTCACCTTGA+TGG | + | chr4.4:7899529-7899548 | MS.gene49718:CDS | 50.0% | |
| GAGACTTGATGCTGTGGAGA+AGG | + | chr4.4:7899750-7899769 | MS.gene49718:CDS | 50.0% | |
| GCTAGTCAACAGCAGCTTGT+CGG | - | chr4.4:7900967-7900986 | None:intergenic | 50.0% | |
| GCTGCAAGACAGAAGAACTC+AGG | + | chr4.4:7899499-7899518 | MS.gene49718:CDS | 50.0% | |
| GCTGCCTCATACACTCTTTG+AGG | - | chr4.4:7899558-7899577 | None:intergenic | 50.0% | |
| GGTGACTAACTCGGTCTTCA+AGG | - | chr4.4:7899525-7899544 | None:intergenic | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | + | chr4.4:7898971-7898990 | MS.gene49718:CDS | 50.0% | |
| TCAGAGGAGACTTGATGCTG+TGG | + | chr4.4:7899744-7899763 | MS.gene49718:CDS | 50.0% | |
| TCATGATCCCGGTTCACGTT+AGG | + | chr4.4:7899261-7899280 | MS.gene49718:intron | 50.0% | |
| ! | ACAGGAGGAGTTGGTTATGG+CGG | + | chr4.4:7897974-7897993 | MS.gene49718:CDS | 50.0% |
| ! | CAAGAAGCAAGAGTGTGAGC+AGG | + | chr4.4:7901535-7901554 | MS.gene49718:CDS | 50.0% |
| ! | GTAGTTTGGACTCTGGAAGC+AGG | + | chr4.4:7901040-7901059 | MS.gene49718:intron | 50.0% |
| ! | TGAGCTGCAATCTCGACTTG+AGG | + | chr4.4:7899792-7899811 | MS.gene49718:CDS | 50.0% |
| ! | TGGACAGGAGGAGTTGGTTA+TGG | + | chr4.4:7897971-7897990 | MS.gene49718:CDS | 50.0% |
| AGCAGCTTGTCGGTAGTCGA+CGG | - | chr4.4:7900957-7900976 | None:intergenic | 55.0% | |
| CCCGGTTCACGTTAGGAGTT+AGG | + | chr4.4:7899268-7899287 | MS.gene49718:intron | 55.0% | |
| CTGGGAGAAGGCTGAAAACG+AGG | + | chr4.4:7899450-7899469 | MS.gene49718:CDS | 55.0% | |
| GCAGGCTTAGATGTGACCTC+TGG | - | chr4.4:7898818-7898837 | None:intergenic | 55.0% | |
| GCTCTTGCACTTCTCTGGCT+TGG | - | chr4.4:7899585-7899604 | None:intergenic | 55.0% | |
| GGAGAAAAGTCCAGGCGAGA+CGG | + | chr4.4:7898008-7898027 | MS.gene49718:CDS | 55.0% | |
| ! | ACTCTTTGAGGGCCCCATCA+AGG | - | chr4.4:7899546-7899565 | None:intergenic | 55.0% |
| ! | GGGCCCTCAAAGAGTGTATG+AGG | + | chr4.4:7899551-7899570 | MS.gene49718:CDS | 55.0% |
| CCAGGCGAGACGGAGAGTTC+AGG | + | chr4.4:7898018-7898037 | MS.gene49718:CDS | 65.0% | |
| CCTGAACTCTCCGTCTCGCC+TGG | - | chr4.4:7898021-7898040 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 7897970 | 7901566 | 7897970 | ID=MS.gene49718 |
| chr4.4 | mRNA | 7897970 | 7901566 | 7897970 | ID=MS.gene49718.t1;Parent=MS.gene49718 |
| chr4.4 | exon | 7897970 | 7898080 | 7897970 | ID=MS.gene49718.t1.exon1;Parent=MS.gene49718.t1 |
| chr4.4 | CDS | 7897970 | 7898080 | 7897970 | ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1 |
| chr4.4 | exon | 7898788 | 7898992 | 7898788 | ID=MS.gene49718.t1.exon2;Parent=MS.gene49718.t1 |
| chr4.4 | CDS | 7898788 | 7898992 | 7898788 | ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1 |
| chr4.4 | exon | 7899449 | 7900758 | 7899449 | ID=MS.gene49718.t1.exon3;Parent=MS.gene49718.t1 |
| chr4.4 | CDS | 7899449 | 7900758 | 7899449 | ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1 |
| chr4.4 | exon | 7901255 | 7901566 | 7901255 | ID=MS.gene49718.t1.exon4;Parent=MS.gene49718.t1 |
| chr4.4 | CDS | 7901255 | 7901566 | 7901255 | ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1 |
| Gene Sequence |
| Protein sequence |
