AlfalfaGEDB | MS.gene49718

M. sativa cultivar XinJiangDaYe / MS.gene49718

KEGG: -
GO: -
PFAM: PF05911.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49718.t1	XP_003630362.1	95.5	645	24	2	1	645	1	640	3.70E-254	887.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49718.t1	Q9MA92	48.4	415	175	6	1	415	1	376	4.1e-84	313.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49718.t1	G7LFP4	95.5	645	24	2	1	645	1	640	2.7e-254	887.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050227	MS.gene49718	0.808329	3.27E-50	-1.69E-46
MS.gene050228	MS.gene49718	0.808025	3.79E-50	-1.69E-46
MS.gene050719	MS.gene49718	0.803139	4.02E-49	-1.69E-46
MS.gene050721	MS.gene49718	0.801625	8.24E-49	-1.69E-46
MS.gene050953	MS.gene49718	0.800003	1.77E-48	-1.69E-46
MS.gene052309	MS.gene49718	-0.817282	3.58E-52	-1.69E-46
MS.gene052376	MS.gene49718	0.806221	9.14E-50	-1.69E-46
MS.gene052561	MS.gene49718	0.823687	1.21E-53	-1.69E-46
MS.gene053216	MS.gene49718	0.823515	1.33E-53	-1.69E-46
MS.gene053221	MS.gene49718	0.801949	7.07E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene002174	MS.gene49718	PPI
MS.gene002176	MS.gene49718	PPI
MS.gene002867	MS.gene49718	PPI
MS.gene00893	MS.gene49718	PPI
MS.gene01146	MS.gene49718	PPI
MS.gene01826	MS.gene49718	PPI
MS.gene01838	MS.gene49718	PPI
MS.gene026126	MS.gene49718	PPI
MS.gene047901	MS.gene49718	PPI
MS.gene047904	MS.gene49718	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49718.t1	MTR_8g094760	96.279	645	19	2	1	645	1	640	0.0	1242
MS.gene49718.t1	MTR_8g094760	96.059	609	19	2	37	645	25	628	0.0	1167
MS.gene49718.t1	MTR_3g096990	60.932	622	201	6	36	636	29	629	0.0	675
MS.gene49718.t1	MTR_3g096990	61.265	506	152	5	36	523	29	508	0.0	535
MS.gene49718.t1	MTR_3g096990	56.371	259	106	3	384	636	466	723	1.83e-77	261
MS.gene49718.t1	MTR_1g030010	46.053	456	210	4	73	513	145	579	2.05e-110	352
MS.gene49718.t1	MTR_1g030010	35.981	214	76	6	467	643	638	827	2.52e-20	96.3
MS.gene49718.t1	MTR_3g113290	38.750	320	147	6	1	273	1	318	2.49e-43	168
MS.gene49718.t1	MTR_1g024095	37.954	303	154	6	1	273	1	299	9.43e-40	157
MS.gene49718.t1	MTR_1g024095	37.954	303	154	6	1	273	1	299	1.05e-39	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49718.t1	AT3G05270	42.530	656	260	10	1	580	1	615	1.12e-137	416
MS.gene49718.t1	AT3G05270	42.530	656	260	10	1	580	1	615	1.12e-137	416
MS.gene49718.t1	AT3G05270	42.530	656	260	10	1	580	1	615	1.12e-137	416
MS.gene49718.t1	AT1G21810	37.345	565	253	14	86	584	13	542	2.32e-78	261
MS.gene49718.t1	AT1G21810	28.826	281	136	8	386	640	381	623	4.82e-13	72.8
MS.gene49718.t1	AT1G21810	37.345	565	253	14	86	584	13	542	2.32e-78	261
MS.gene49718.t1	AT1G21810	28.826	281	136	8	386	640	381	623	4.82e-13	72.8
MS.gene49718.t1	AT1G77580	47.500	320	134	5	72	390	28	314	3.13e-75	253
MS.gene49718.t1	AT1G77580	47.500	320	134	5	72	390	28	314	4.45e-74	253
MS.gene49718.t1	AT1G77580	32.168	286	139	6	380	639	482	738	9.37e-20	94.4

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Find 106 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCTGGAGAAAATGG+AGG	0.684854	4.4:+7900326	MS.gene49718:CDS
AAATTTGGAGAGCACCAAGA+AGG	0.563758	4.4:+7899879	MS.gene49718:CDS
AACAGCTAGTAAGCAAAATT+TGG	0.251696	4.4:+7899864	MS.gene49718:CDS
AACTATCTCCTTCTTTGTTT+TGG	0.200345	4.4:-7900511	None:intergenic
AAGAAGCAAGAGTGTGAGCA+GGG	0.538699	4.4:+7901536	MS.gene49718:CDS
AAGTCATCGGAGAAAAGTCC+AGG	0.496717	4.4:+7898000	MS.gene49718:CDS
AATCAAGAGCAGGAAGTTGG+AGG	0.569457	4.4:+7900641	MS.gene49718:CDS
AATTAGTGCCAAAGAAGACA+TGG	0.626226	4.4:+7898931	MS.gene49718:CDS
ACACAACAAAGTCCCCAAAA+AGG	0.401435	4.4:+7901402	MS.gene49718:CDS
ACAGATAACATTTCAGATGG+TGG	0.563408	4.4:+7900012	MS.gene49718:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTTATCTACCAAACC+AGG	-	chr4.4:7899113-7899132	None:intergenic	30.0%
AAAACTTATCTACCAAACCA+GGG	-	chr4.4:7899112-7899131	None:intergenic	30.0%
AAACTATCTCAAGTTACAGT+AGG	-	chr4.4:7898525-7898544	None:intergenic	30.0%
AACAGCTAGTAAGCAAAATT+TGG	+	chr4.4:7899864-7899883	MS.gene49718:CDS	30.0%
AACATACATGCAGTCAAAAA+TGG	-	chr4.4:7898119-7898138	None:intergenic	30.0%
AACTATCTCAAGTTACAGTA+GGG	-	chr4.4:7898524-7898543	None:intergenic	30.0%
AACTGCTATTACTGGTATTT+AGG	-	chr4.4:7901174-7901193	None:intergenic	30.0%
AAGGTAAGAAAAATGAACCA+TGG	-	chr4.4:7899327-7899346	None:intergenic	30.0%
AGATAAACTTGATGTAGAGA+TGG	+	chr4.4:7900350-7900369	MS.gene49718:CDS	30.0%
CATCTATAATAACAGGATAC+CGG	+	chr4.4:7898480-7898499	MS.gene49718:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	7897970	7901566	7897970	ID=MS.gene49718
chr4.4	mRNA	7897970	7901566	7897970	ID=MS.gene49718.t1;Parent=MS.gene49718
chr4.4	exon	7897970	7898080	7897970	ID=MS.gene49718.t1.exon1;Parent=MS.gene49718.t1
chr4.4	CDS	7897970	7898080	7897970	ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1
chr4.4	exon	7898788	7898992	7898788	ID=MS.gene49718.t1.exon2;Parent=MS.gene49718.t1
chr4.4	CDS	7898788	7898992	7898788	ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1
chr4.4	exon	7899449	7900758	7899449	ID=MS.gene49718.t1.exon3;Parent=MS.gene49718.t1
chr4.4	CDS	7899449	7900758	7899449	ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1
chr4.4	exon	7901255	7901566	7901255	ID=MS.gene49718.t1.exon4;Parent=MS.gene49718.t1
chr4.4	CDS	7901255	7901566	7901255	ID=cds.MS.gene49718.t1;Parent=MS.gene49718.t1

Gene Sequence

>MS.gene49718

ATGGACAGGAGGAGTTGGTTATGGCGGAGAAAGTCATCGGAGAAAAGTCCAGGCGAGACGGAGAGTTCAGGATCAGTATCGTCTCTCTCAGAAAGATTTTCTGATGAACAGGTGGTGTATAAGTAATTTAATTGACTTTGTTTTCTCCATTTTTGACTGCATGTATGTTAAATTTTTTTAAGTTCAATTTTACTCACTGTCACATGGTTTGGGAGCATTTCTCTCTATCTTTTCTTTCACAATTCAGTCTTGTGGGAATGTGTACTAGATAATATGGGTTATGTTATGACCATTTTCTCAAGTGAAAATCTCGGTGGTTGTTGAAGGAGATGAAAAAAAAAATTGAGGGCGTGAATGTGGAAACTAGAAAAAGTTGTTATTTATCATGTTGCAGACATTGTGAAACAGGTGTTAAGAAAGTGTCTTTACTTTAAGGGGATACATTATAGAGAACAAGAGAGTAATTAACAACTAATAAACTACTTGCTAATTGCTAACTATAACTATTTTCATCTATAATAACAGGATACCGGAATAATTGCTCTCGTTGTCCCTACTGTAACTTGAGATAGTTTGTAAATGTCTAGGCTACATGAAAACAATGGTTATTGCTCGGTCTGCAAATTTCTCATGGTCTAGTTCGCTTTTTAAGCATTCAGGATTTTGTTGCAATGAATCTGCTCGGTCTGCACATTCTTCATGGTCTTGTTTTTTTTTTCTAAGCATTCAGGATTATGTTGTAATGAATCTGCTCGGTCTTCATGCCAATAATGTGATGAATCTGATTTTCTTTTTCTTCCCATGCTGTAACTGTGAAGGTATATCCAATCCAAGCTACTCTATCACCAGAGGTCACATCTAAGCCTGCACCAATTGAAGAAGTTAGTACACCCAAAAAATATAAAGAAGAAGGTATTGACGTGAAGACTCTTACAAACGAATTAGCTGCAGCTCTGTTGGAAATTAGTGCCAAAGAAGACATGGTAAAGCAGCATTCTAAAGTTGCTGAAGAAGCTGTCTCAGGTATTTACTGTTTGGACCAGATATTTAATTCGTAGATTATTCATGTTTTACACTTCATACATTTCTTTCTCAAAGATTTCATTTGTCAATATGTATCATGTATATCAATAAATTTGCCCTGGTTTGGTAGATAAGTTTTTCAAATGAGAAAGCTAATCCTTTGCAGCTGTAATTAATTTTTTTGTTTTACAGTTCTTCTAGTACTGAATTAGTTGCAGCTATTGACGAACGAAAATTGAAACTAAAGCTGAATTTATCTTCACAACCATCATGATCCCGGTTCACGTTAGGAGTTAGGACAGTCTAGTAAAATGTGCTTCTTTTTGCTTGTCCATGGTTCATTTTTCTTACCTTGGGAAGCCATGACTATCATCATAATCTTCTAACTTAATGGGTTTCACAGAAGTTTAAACCAAGGTATATATGAAAAGATATACTGTTTTTCATTTTATTTAGGCTGGGAGAAGGCTGAAAACGAGGTGTCGTCTTTAAAACAACAACTTGATGCTGCAAGACAGAAGAACTCAGGCCTTGAAGACCGAGTTAGTCACCTTGATGGGGCCCTCAAAGAGTGTATGAGGCAGCTTCGCCAAGCCAGAGAAGTGCAAGAGCAAAAGATCCATGAAGCTGTGGCAAATAACTCACATGACTCGGGATCCAGAAGATTCGAACTTGAGAGAAAAGTTGCTGAGCTTGAGGTTCAACTTCAAACATCAAAAGCAGAAGCTGCTGCATCTATTCGCTCCGATCTTCAGAGGAGACTTGATGCTGTGGAGAAGGAGAATTCAAGTCTTCAGCTTGAGCTGCAATCTCGACTTGAGGAACTAGAATTCAGGATTGCAGAGAGGGATTTGAGTATCCAAGCTGCTGAAACAGCTAGTAAGCAAAATTTGGAGAGCACCAAGAAGGTTGCTAAGCTTGAAGCTGAGTGCCGTAGACTGAAATCCATGACTCGTAAAACATTTAATGTGAATGATAATAGGTCATTGACCGCATCTTCAATTTATATTGAGTCCTTTACAGATAACATTTCAGATGGTGGAGAGCTGAATGAATATGAACCAAGCTGTTCTGACTCATGTTCATCTGCTTTAATTACCGAATTTGATCAATTCAAGAATAAAAAGACTACTGGAAAAAATCATATTGCGACTTCAACTGAGATCAATCTCATGGATGATTTCCTTGAGATGGAAAGGCTTGCTGCTTTGCCAGATACAGAAAGTGGAAGCCGTTATGTTAATGGAGGACGAGTATTGGATCAATCTATTGTTGGTCAAGGTACAATGGAAGCTGAAATGGAAGCTATGATTGAAAAGAATGCCGAATTGGAAAAGAAGCTGGAGAAAATGGAGGCAGATAAACTTGATGTAGAGATGGGTTTAACTGAGTGCCAAATGCAGCTCGAGAAATCAGAGAATCGGATAAGAGCAGCAGAATTGAAGGTAGAAGAGCTTCAAACTCAGTTAGCTCTTGCAAACAAATCGAATCAAGAAGCATATGAAGAACTGAAAGAAACCAAAACAAAGAAGGAGATAGTTGAGTCGAAACTGAAATTTGCTCAAACTGAGGTAGAAGAACTGATTTCAAAAATCCATTCATTGGAGGAAGAGATTCAAAAGGAACGAGCTTTGTCTGCTGAGAATTCAATCAAGAGCAGGAAGTTGGAGGGCGAGCTTTCAAGAATGAAGCATGAAGCTCAAGTTCAGCAAGATGCCAGGACTTTGCACAAGGAAAATATTAATCGCGATTTGAAGTCAAAACAGGTCAGTTTGCTAATACTTATTTGGAGCTCAAATTTTTATGCCGTGTTTAATGTATTTTGCAATGTAGTAGCTAACCTTCTAGCATTACTTTTTATGATAAAAATTGTCAAGTGCAAACACATTCTTCAATCCTTTTTTGTTGGTTGAAACAATTTCTGTGTCTTTACACTTACAAAGAAATCTTACAATCATAGTCCGTCGACTACCGACAAGCTGCTGTTGACTAGCTAGTCAAACAGCTTCTCTGCTTCCATAGTCCAAACTACAATTAAATTGCATTTGTAGTTTGGACTCTGGAAGCAGGAAACTTGCGCTGCCCCCAATTCCTTTGTGTTGCTGTTTATATGATCAACATAAATTTAATTATATATGTTTTAGTGAGCATTTGAAGCTAATTATTGTTAAATAAAAACCTAAATACCAGTAATAGCAGTTAAGTAATCATATTGCATTGGTCATTTTTTCCATATAAAAAACTTAGTATCTGCTATTTCAGGACAAAGAACTTGCATTGGCTACTAGCAAGTTTGCTGAGTGCCAAAAAACCATTGCATCTCTTGGAAAGCAGTTGAAGTCTCTTGCAACATTGGAAGACTTCCTACTTGATTCAGACAACAGCCCTATGGAGTTAACTTGTGAAGTTACACAACAAAGTCCCCAAAAAGGAGGTGAAAAATTGAAATTAAATCATAGTGATTTGAGTATGCCCAAAAGAGATTCAATAAACTCATCTATTACTCATGAGAAAAGCCGTAATGGATTTGGTAAGTTCATACCAAGAAGCAAGAGTGTGAGCAGGGCTCGTTGA

Protein sequence

>MS.gene49718.t1

MDRRSWLWRRKSSEKSPGETESSGSVSSLSERFSDEQVYPIQATLSPEVTSKPAPIEEVSTPKKYKEEGIDVKTLTNELAAALLEISAKEDMVKQHSKVAEEAVSGWEKAENEVSSLKQQLDAARQKNSGLEDRVSHLDGALKECMRQLRQAREVQEQKIHEAVANNSHDSGSRRFELERKVAELEVQLQTSKAEAAASIRSDLQRRLDAVEKENSSLQLELQSRLEELEFRIAERDLSIQAAETASKQNLESTKKVAKLEAECRRLKSMTRKTFNVNDNRSLTASSIYIESFTDNISDGGELNEYEPSCSDSCSSALITEFDQFKNKKTTGKNHIATSTEINLMDDFLEMERLAALPDTESGSRYVNGGRVLDQSIVGQGTMEAEMEAMIEKNAELEKKLEKMEADKLDVEMGLTECQMQLEKSENRIRAAELKVEELQTQLALANKSNQEAYEELKETKTKKEIVESKLKFAQTEVEELISKIHSLEEEIQKERALSAENSIKSRKLEGELSRMKHEAQVQQDARTLHKENINRDLKSKQDKELALATSKFAECQKTIASLGKQLKSLATLEDFLLDSDNSPMELTCEVTQQSPQKGGEKLKLNHSDLSMPKRDSINSSITHEKSRNGFGKFIPRSKSVSRAR