Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49875.t1 | RHN42281.1 | 91.6 | 774 | 65 | 0 | 1 | 774 | 1085 | 1858 | 0.00E+00 | 1419.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49875.t1 | Q8BV79 | 28.1 | 853 | 465 | 24 | 26 | 766 | 1035 | 1851 | 4.0e-70 | 267.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49875.t1 | A0A396GQ35 | 91.6 | 774 | 65 | 0 | 1 | 774 | 1085 | 1858 | 0.0e+00 | 1419.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene49875 | 0.844017 | 9.81E-59 | -1.69E-46 |
| MS.gene049151 | MS.gene49875 | 0.821706 | 3.50E-53 | -1.69E-46 |
| MS.gene049153 | MS.gene49875 | 0.833877 | 4.14E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene49875 | 0.817381 | 3.40E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene49875 | 0.802234 | 6.18E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene49875 | 0.811883 | 5.60E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene49875 | 0.80295 | 4.40E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene49875 | 0.80482 | 1.80E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene49875 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene053494 | MS.gene49875 | 0.833486 | 5.19E-56 | -1.69E-46 |
| MS.gene054379 | MS.gene49875 | 0.815627 | 8.39E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene49875 | 0.80944 | 1.89E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene49875 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene49875 | 0.825169 | 5.43E-54 | -1.69E-46 |
| MS.gene057394 | MS.gene49875 | 0.823454 | 1.37E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene49875 | 0.814194 | 1.74E-51 | -1.69E-46 |
| MS.gene057863 | MS.gene49875 | 0.846359 | 2.28E-59 | -1.69E-46 |
| MS.gene059128 | MS.gene49875 | 0.812845 | 3.45E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene49875 | 0.807038 | 6.14E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTGTTTATTTATTTTAA+TGG | - | 33182:3334-3353 | MS.gene49875:intron | 10.0% |
| !! | AATTAAATAGTACAAAGTTT+GGG | + | 33182:1788-1807 | MS.gene49875:intergenic | 15.0% |
| !!! | TAGATTTATAATTTTCTTTG+CGG | - | 33182:3820-3839 | MS.gene49875:CDS | 15.0% |
| !! | AAAAAATGAAGATGAACAAA+GGG | - | 33182:2609-2628 | MS.gene49875:intron | 20.0% |
| !! | AAAAGAATACTATACAAATG+CGG | + | 33182:3954-3973 | MS.gene49875:intergenic | 20.0% |
| !! | AAATCAAGTCTCATATAAAA+GGG | - | 33182:2456-2475 | MS.gene49875:CDS | 20.0% |
| !! | AATTTATGTTGAGAATTCAA+AGG | - | 33182:559-578 | MS.gene49875:CDS | 20.0% |
| !! | ACTTAGAATTAACAAATATG+AGG | - | 33182:2673-2692 | MS.gene49875:intron | 20.0% |
| !! | ATTAAATAGTACAAAGTTTG+GGG | + | 33182:1787-1806 | MS.gene49875:intergenic | 20.0% |
| !! | ATTTAAGTAAATGCATGATA+AGG | - | 33182:1736-1755 | MS.gene49875:CDS | 20.0% |
| !! | CAATTAAATAGTACAAAGTT+TGG | + | 33182:1789-1808 | MS.gene49875:intergenic | 20.0% |
| !! | CTTAGAATTAACAAATATGA+GGG | - | 33182:2674-2693 | MS.gene49875:intron | 20.0% |
| !! | TTATCAAAATAACTATGAGA+TGG | - | 33182:4018-4037 | MS.gene49875:CDS | 20.0% |
| !!! | AAAGTTTTGATTCAACAAAA+AGG | + | 33182:2948-2967 | MS.gene49875:intergenic | 20.0% |
| !!! | ATTAAGAATCTTGATAGTAA+TGG | - | 33182:503-522 | MS.gene49875:CDS | 20.0% |
| !!! | ATTTTCCAATAATCAAACAT+GGG | + | 33182:3614-3633 | MS.gene49875:intergenic | 20.0% |
| !!! | TTTTGATAATATAACTGCAA+AGG | + | 33182:4007-4026 | MS.gene49875:intergenic | 20.0% |
| ! | AAAAATGAAGATGAACAAAG+GGG | - | 33182:2610-2629 | MS.gene49875:intron | 25.0% |
| ! | AAAATGATAAAGAAGCTCAA+TGG | + | 33182:3008-3027 | MS.gene49875:intergenic | 25.0% |
| ! | AAATAAAGCAATTTGACTCA+TGG | + | 33182:2744-2763 | MS.gene49875:intergenic | 25.0% |
| ! | AATCAAGTCTCATATAAAAG+GGG | - | 33182:2457-2476 | MS.gene49875:CDS | 25.0% |
| ! | AATTCCTAAAGTTAAAGATG+TGG | - | 33182:1340-1359 | MS.gene49875:intron | 25.0% |
| ! | ACAAATAATTGATGTAAGAC+AGG | + | 33182:908-927 | MS.gene49875:intergenic | 25.0% |
| ! | ACAGGTTTGATTCATTATAT+TGG | - | 33182:2378-2397 | MS.gene49875:CDS | 25.0% |
| ! | ACATAAGGTTCAACAAAAAA+AGG | + | 33182:1289-1308 | MS.gene49875:intergenic | 25.0% |
| ! | ATAATATAACTGCAAAGGAA+CGG | + | 33182:4002-4021 | MS.gene49875:intergenic | 25.0% |
| ! | ATCACTAAATCTTTCGAAAA+AGG | + | 33182:2279-2298 | MS.gene49875:intergenic | 25.0% |
| ! | CATAAGGTTCAACAAAAAAA+GGG | + | 33182:1288-1307 | MS.gene49875:intergenic | 25.0% |
| ! | CATAGTGGTTACTAAAATTA+AGG | + | 33182:1937-1956 | MS.gene49875:intergenic | 25.0% |
| ! | CATGAAGTTATTTAAAAAGG+AGG | - | 33182:775-794 | MS.gene49875:intron | 25.0% |
| ! | GAAAAAATGAAGATGAACAA+AGG | - | 33182:2608-2627 | MS.gene49875:intron | 25.0% |
| ! | GAAATCAAGTCTCATATAAA+AGG | - | 33182:2455-2474 | MS.gene49875:CDS | 25.0% |
| ! | GACCATGAAGTTATTTAAAA+AGG | - | 33182:772-791 | MS.gene49875:intron | 25.0% |
| ! | TATGAATGAACAAGATATAC+TGG | - | 33182:3445-3464 | MS.gene49875:intron | 25.0% |
| ! | TGTATATATTGATGAAGTTC+AGG | - | 33182:2712-2731 | MS.gene49875:intron | 25.0% |
| ! | TTAAATAGTACAAAGTTTGG+GGG | + | 33182:1786-1805 | MS.gene49875:intergenic | 25.0% |
| ! | TTTAGTGATCAATCTTCTTT+AGG | - | 33182:2290-2309 | MS.gene49875:CDS | 25.0% |
| !! | AACTTTAGGAATTATCAAGT+AGG | + | 33182:1333-1352 | MS.gene49875:intergenic | 25.0% |
| !! | AAGGAAATTTTAGACTATGT+TGG | - | 33182:3217-3236 | MS.gene49875:intron | 25.0% |
| !! | AAGTTTTTAATGATGCTTGA+TGG | - | 33182:2239-2258 | MS.gene49875:CDS | 25.0% |
| !! | AATGCCATTGTAACTATTTT+TGG | - | 33182:3115-3134 | MS.gene49875:intron | 25.0% |
| !! | AGTTTTTAATGATGCTTGAT+GGG | - | 33182:2240-2259 | MS.gene49875:CDS | 25.0% |
| !! | CATTTTCCAATAATCAAACA+TGG | + | 33182:3615-3634 | MS.gene49875:intergenic | 25.0% |
| !! | CTCCTTTTTAAATAACTTCA+TGG | + | 33182:777-796 | MS.gene49875:intergenic | 25.0% |
| !! | TTCATCTATAGAACAACTTT+TGG | + | 33182:2120-2139 | MS.gene49875:intergenic | 25.0% |
| !! | TTTATCTTTTCCATGGTTAT+CGG | + | 33182:2909-2928 | MS.gene49875:intergenic | 25.0% |
| !! | TTTTCTATGCAGTCTTTAAT+TGG | - | 33182:2038-2057 | MS.gene49875:CDS | 25.0% |
| !!! | CACTAACCAATATTTGTTTT+AGG | - | 33182:1611-1630 | MS.gene49875:CDS | 25.0% |
| !!! | CTTAATTTTAGTAACCACTA+TGG | - | 33182:1935-1954 | MS.gene49875:CDS | 25.0% |
| AACCATTACTTGATTACTGA+TGG | + | 33182:1892-1911 | MS.gene49875:intergenic | 30.0% | |
| AAGATGTGGTCTATAATACT+AGG | - | 33182:1354-1373 | MS.gene49875:intron | 30.0% | |
| AATAAAACTTAAGTGAGCTC+AGG | + | 33182:2008-2027 | MS.gene49875:intergenic | 30.0% | |
| ACAAAATGAATCAGACAAGA+TGG | + | 33182:3307-3326 | MS.gene49875:intergenic | 30.0% | |
| ACTTAAATTGCAATTCATGC+AGG | + | 33182:1724-1743 | MS.gene49875:intergenic | 30.0% | |
| ATAAAACTTAAGTGAGCTCA+GGG | + | 33182:2007-2026 | MS.gene49875:intergenic | 30.0% | |
| ATAGTATAATATCACCTACG+AGG | + | 33182:3871-3890 | MS.gene49875:intergenic | 30.0% | |
| ATCAAGTCTCATATAAAAGG+GGG | - | 33182:2458-2477 | MS.gene49875:CDS | 30.0% | |
| CTATTCTTTATCATCTGTTG+TGG | - | 33182:610-629 | MS.gene49875:CDS | 30.0% | |
| GGAAGATTAACAAAAGAATC+TGG | + | 33182:2185-2204 | MS.gene49875:intergenic | 30.0% | |
| GTTGCCAAAAATAGTTACAA+TGG | + | 33182:3122-3141 | MS.gene49875:intergenic | 30.0% | |
| TAAAGAGAGATTTGATATCC+TGG | + | 33182:2853-2872 | MS.gene49875:intergenic | 30.0% | |
| TAAATAGTACAAAGTTTGGG+GGG | + | 33182:1785-1804 | MS.gene49875:intergenic | 30.0% | |
| TAGTCTCTTGTGTAAAAACA+TGG | - | 33182:1140-1159 | MS.gene49875:CDS | 30.0% | |
| TATCCTTTGATAGACACATA+AGG | + | 33182:1304-1323 | MS.gene49875:intergenic | 30.0% | |
| TATTACGATCAGAAAGTAAG+TGG | + | 33182:640-659 | MS.gene49875:intergenic | 30.0% | |
| TCAAAACATCAATGGAATGA+GGG | + | 33182:3033-3052 | MS.gene49875:intergenic | 30.0% | |
| TCTTCATCTGATACTTCAAA+AGG | + | 33182:680-699 | MS.gene49875:intergenic | 30.0% | |
| TCTTGTACAATTCAAAGAAC+TGG | - | 33182:3640-3659 | MS.gene49875:intron | 30.0% | |
| TCTTGTGTAAAAACATGGTA+AGG | - | 33182:1145-1164 | MS.gene49875:CDS | 30.0% | |
| TCTTTCTCATCATTCAAACA+AGG | + | 33182:854-873 | MS.gene49875:intergenic | 30.0% | |
| TGAGCTTAAACAACTATATG+TGG | - | 33182:3529-3548 | MS.gene49875:intron | 30.0% | |
| TGATCGTAATAGTAATGAAC+TGG | - | 33182:649-668 | MS.gene49875:CDS | 30.0% | |
| TGCGTTCCTAAAACAAATAT+TGG | + | 33182:1620-1639 | MS.gene49875:intergenic | 30.0% | |
| TTATTGGGAAAAAAGGTCTA+AGG | - | 33182:4072-4091 | MS.gene49875:CDS | 30.0% | |
| TTCAAAACATCAATGGAATG+AGG | + | 33182:3034-3053 | MS.gene49875:intergenic | 30.0% | |
| ! | AATCTAGCTTCTTGGTATAT+TGG | + | 33182:2418-2437 | MS.gene49875:intergenic | 30.0% |
| ! | ATCTAGCTTCTTGGTATATT+GGG | + | 33182:2417-2436 | MS.gene49875:intergenic | 30.0% |
| ! | CATCACCTTTGAAAAATCAA+TGG | - | 33182:3405-3424 | MS.gene49875:intron | 30.0% |
| ! | CCTAAAAGTACATTTGTACT+GGG | - | 33182:719-738 | MS.gene49875:intron | 30.0% |
| ! | CTTTCACTTTATCTTTTCCA+TGG | + | 33182:2916-2935 | MS.gene49875:intergenic | 30.0% |
| ! | TAGACCACATCTTTAACTTT+AGG | + | 33182:1347-1366 | MS.gene49875:intergenic | 30.0% |
| ! | TCCTAAAAGTACATTTGTAC+TGG | - | 33182:718-737 | MS.gene49875:intron | 30.0% |
| ! | TGAAAGCACAACGAATATAA+TGG | + | 33182:3750-3769 | MS.gene49875:intergenic | 30.0% |
| ! | TGTTTGGAATCATTGAAACT+GGG | + | 33182:3494-3513 | MS.gene49875:intergenic | 30.0% |
| ! | TTCTGAAAAGTTATCACAAG+TGG | + | 33182:2221-2240 | MS.gene49875:intergenic | 30.0% |
| !! | GGTCATTTGTATTATTTTGC+AGG | - | 33182:3355-3374 | MS.gene49875:intron | 30.0% |
| !! | GGTGAAATTTTTGAAAGCAT+AGG | - | 33182:4172-4191 | MS.gene49875:CDS | 30.0% |
| !!! | AACCTCCATTGATTTTTCAA+AGG | + | 33182:3413-3432 | MS.gene49875:intergenic | 30.0% |
| !!! | AGCTCTGGTTTTAACTATTT+TGG | - | 33182:3246-3265 | MS.gene49875:intron | 30.0% |
| !!! | GTAACTATTTTTGGCAACAT+TGG | - | 33182:3124-3143 | MS.gene49875:intron | 30.0% |
| !!! | TAACTATTTTGGAGTGCAAA+GGG | - | 33182:3257-3276 | MS.gene49875:intron | 30.0% |
| !!! | TTAACTATTTTGGAGTGCAA+AGG | - | 33182:3256-3275 | MS.gene49875:intron | 30.0% |
| !!! | TTGCTTTGGAGACTTTTATA+AGG | - | 33182:2336-2355 | MS.gene49875:CDS | 30.0% |
| AAAATCAATTCCCCTTGCAA+TGG | + | 33182:2825-2844 | MS.gene49875:intergenic | 35.0% | |
| AAATGGAGGTTCCAATGAAT+TGG | - | 33182:456-475 | MS.gene49875:CDS | 35.0% | |
| AACAGGTCGTTAGAATGAAA+AGG | - | 33182:963-982 | MS.gene49875:intron | 35.0% | |
| AAGCACAACGAATATAATGG+TGG | + | 33182:3747-3766 | MS.gene49875:intergenic | 35.0% | |
| AATGGAGGTTCCAATGAATT+GGG | - | 33182:457-476 | MS.gene49875:CDS | 35.0% | |
| AATTCATGCAGGAAATGTTG+GGG | + | 33182:1713-1732 | MS.gene49875:intergenic | 35.0% | |
| ACAAGGAAAGATAATCCTGA+CGG | + | 33182:2520-2539 | MS.gene49875:intergenic | 35.0% | |
| ACAATCCAACAGATATTGTC+AGG | + | 33182:1467-1486 | MS.gene49875:intergenic | 35.0% | |
| AGAACACAAAAGGTTGTGTT+TGG | + | 33182:3510-3529 | MS.gene49875:intergenic | 35.0% | |
| AGGAAAGCTAATAGGCATTA+AGG | + | 33182:1815-1834 | MS.gene49875:intergenic | 35.0% | |
| ATCCTTAAGCAAGCAGAAAA+GGG | - | 33182:2556-2575 | MS.gene49875:CDS | 35.0% | |
| ATCTTGTTGAACCTTATGTG+AGG | - | 33182:1048-1067 | MS.gene49875:CDS | 35.0% | |
| ATTGAAACTGGGAAAAGACT+TGG | + | 33182:3483-3502 | MS.gene49875:intergenic | 35.0% | |
| CAATTCATGCAGGAAATGTT+GGG | + | 33182:1714-1733 | MS.gene49875:intergenic | 35.0% | |
| CAGGTTTCAACTCATGTAAA+CGG | + | 33182:4123-4142 | MS.gene49875:intergenic | 35.0% | |
| GAACCTTATGTGTCTATCAA+AGG | - | 33182:1298-1317 | MS.gene49875:CDS | 35.0% | |
| GACATACAAGGAAAGCTAAT+AGG | + | 33182:1823-1842 | MS.gene49875:intergenic | 35.0% | |
| GGAAAAGACTTGGATTCTAT+AGG | + | 33182:3473-3492 | MS.gene49875:intergenic | 35.0% | |
| GTAGACCCATGTTTGATTAT+TGG | - | 33182:3606-3625 | MS.gene49875:intron | 35.0% | |
| GTATATTGGGAGTTGAAATG+TGG | + | 33182:2404-2423 | MS.gene49875:intergenic | 35.0% | |
| GTTTAAGCTCAGAACACAAA+AGG | + | 33182:3520-3539 | MS.gene49875:intergenic | 35.0% | |
| TAACTTCATGGTCAAAACAG+TGG | + | 33182:765-784 | MS.gene49875:intergenic | 35.0% | |
| TAATTCTAAGTCGACGATGA+AGG | + | 33182:2664-2683 | MS.gene49875:intergenic | 35.0% | |
| TATCACAAGTGGATATGAGT+TGG | + | 33182:2210-2229 | MS.gene49875:intergenic | 35.0% | |
| TCCCAAATCAGAAAAACACT+GGG | + | 33182:4215-4234 | MS.gene49875:intergenic | 35.0% | |
| TCTTGTTGAACCTTATGTGA+GGG | - | 33182:1049-1068 | MS.gene49875:CDS | 35.0% | |
| TGCCATCAGTAATCAAGTAA+TGG | - | 33182:1887-1906 | MS.gene49875:CDS | 35.0% | |
| TGTGCATACAGATTCATATG+CGG | - | 33182:2080-2099 | MS.gene49875:CDS | 35.0% | |
| TGTTGAGAATTCAAAGGTTG+AGG | - | 33182:565-584 | MS.gene49875:CDS | 35.0% | |
| TTACACAAGAGACTATTTCC+AGG | + | 33182:1135-1154 | MS.gene49875:intergenic | 35.0% | |
| TTCACTGCTTGACAAAGTTT+GGG | + | 33182:941-960 | MS.gene49875:intergenic | 35.0% | |
| TTGCTAGTAGTTCAGAAGAA+TGG | - | 33182:3690-3709 | MS.gene49875:intron | 35.0% | |
| TTGGGAGATTATAAAAGAGC+AGG | - | 33182:4229-4248 | MS.gene49875:CDS | 35.0% | |
| TTTCACTGCTTGACAAAGTT+TGG | + | 33182:942-961 | MS.gene49875:intergenic | 35.0% | |
| TTTGTCCTGACAATATCTGT+TGG | - | 33182:1459-1478 | MS.gene49875:CDS | 35.0% | |
| ! | AAGAGGGTTTCGTATTTTGT+GGG | - | 33182:2786-2805 | MS.gene49875:intron | 35.0% |
| ! | ACAATGTGTTTTCAAAGTGC+TGG | - | 33182:4043-4062 | MS.gene49875:CDS | 35.0% |
| ! | CACCTTTGAAAAATCAATGG+AGG | - | 33182:3408-3427 | MS.gene49875:intron | 35.0% |
| ! | CCCAGTACAAATGTACTTTT+AGG | + | 33182:722-741 | MS.gene49875:intergenic | 35.0% |
| ! | GGAGACTTTTATAAGGAAGA+AGG | - | 33182:2343-2362 | MS.gene49875:CDS | 35.0% |
| ! | GTGTTTGGAATCATTGAAAC+TGG | + | 33182:3495-3514 | MS.gene49875:intergenic | 35.0% |
| ! | GTTGATTTCTCCCAATTCAT+TGG | + | 33182:470-489 | MS.gene49875:intergenic | 35.0% |
| ! | TTTACATGAGTTGAAACCTG+AGG | - | 33182:4123-4142 | MS.gene49875:CDS | 35.0% |
| !! | CAATGTGTTTTCAAAGTGCT+GGG | - | 33182:4044-4063 | MS.gene49875:CDS | 35.0% |
| !! | TTGCAAGGGGAATTGATTTT+AGG | - | 33182:2825-2844 | MS.gene49875:intron | 35.0% |
| !!! | AATGTGTTTTCAAAGTGCTG+GGG | - | 33182:4045-4064 | MS.gene49875:CDS | 35.0% |
| !!! | GAACAAAGGGGATTTTGATT+TGG | - | 33182:2622-2641 | MS.gene49875:intron | 35.0% |
| !!! | GTACTGCTGTACAACTTTTT+TGG | - | 33182:3380-3399 | MS.gene49875:intron | 35.0% |
| AAAAACTTAGTGTACGAGGG+GGG | + | 33182:1863-1882 | MS.gene49874:intergenic | 40.0% | |
| AACTTTCATTGCCTGAGCAA+GGG | + | 33182:3672-3691 | MS.gene49875:intergenic | 40.0% | |
| AAGAGAAGTTCCGATAACCA+TGG | - | 33182:2896-2915 | MS.gene49875:intron | 40.0% | |
| AAGCAACAGATCTTACACCA+AGG | + | 33182:2322-2341 | MS.gene49875:intergenic | 40.0% | |
| ACAGTTCTACTGTGAATGAC+AGG | - | 33182:882-901 | MS.gene49875:intron | 40.0% | |
| AGAAGGAAGTGACTTATGAC+AGG | - | 33182:2360-2379 | MS.gene49875:CDS | 40.0% | |
| AGCCAAAAACTTAGTGTACG+AGG | + | 33182:1867-1886 | MS.gene49875:intergenic | 40.0% | |
| ATATCACCTACGAGGTAGTT+AGG | + | 33182:3863-3882 | MS.gene49875:intergenic | 40.0% | |
| ATGGATTTCTCGTGGCAAAA+AGG | - | 33182:3709-3728 | MS.gene49875:intron | 40.0% | |
| ATTCATGCAGGAAATGTTGG+GGG | + | 33182:1712-1731 | MS.gene49875:intergenic | 40.0% | |
| CAAAAACTTAGTGTACGAGG+GGG | + | 33182:1864-1883 | MS.gene49875:intergenic | 40.0% | |
| CAAAACTTTCGAACTCATGC+TGG | - | 33182:2959-2978 | MS.gene49875:intron | 40.0% | |
| CACTAAGCAAAGGACATACA+AGG | + | 33182:1835-1854 | MS.gene49875:intergenic | 40.0% | |
| CATCCTTAAGCAAGCAGAAA+AGG | - | 33182:2555-2574 | MS.gene49875:CDS | 40.0% | |
| CATGACAGTGGGAAAATTGT+TGG | - | 33182:3148-3167 | MS.gene49875:intron | 40.0% | |
| CCAAAAACTTAGTGTACGAG+GGG | + | 33182:1865-1884 | MS.gene49875:intergenic | 40.0% | |
| CCTGAGACCAGTTTGATATA+CGG | - | 33182:3055-3074 | MS.gene49875:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | 33182:1214-1233 | MS.gene49875:CDS | 40.0% | |
| CTATGTTGGAAAACAAGCTC+TGG | - | 33182:3231-3250 | MS.gene49875:intron | 40.0% | |
| CTCAGGCTTCAAAACATCAA+TGG | + | 33182:3041-3060 | MS.gene49875:intergenic | 40.0% | |
| CTCCCAAATCAGAAAAACAC+TGG | + | 33182:4216-4235 | MS.gene49875:intergenic | 40.0% | |
| CTGAGACCAGTTTGATATAC+GGG | - | 33182:3056-3075 | MS.gene49875:intron | 40.0% | |
| CTTCCACATTCAAGAACAAC+TGG | + | 33182:3088-3107 | MS.gene49875:intergenic | 40.0% | |
| CTTGATTTCAGTGAACACTC+TGG | + | 33182:2444-2463 | MS.gene49875:intergenic | 40.0% | |
| CTTGCAAAGTGATACCATAG+TGG | + | 33182:1952-1971 | MS.gene49875:intergenic | 40.0% | |
| CTTGTTGAACCTTATGTGAG+GGG | - | 33182:1050-1069 | MS.gene49875:CDS | 40.0% | |
| GCAATTCATGCAGGAAATGT+TGG | + | 33182:1715-1734 | MS.gene49875:intergenic | 40.0% | |
| GCATGATAAGGTGTATACAC+AGG | - | 33182:1748-1767 | MS.gene49875:CDS | 40.0% | |
| GCCAAAAACTTAGTGTACGA+GGG | + | 33182:1866-1885 | MS.gene49875:intergenic | 40.0% | |
| GGGACTCTTATTGGGAAAAA+AGG | - | 33182:4065-4084 | MS.gene49875:CDS | 40.0% | |
| GTGTGTCGAAATGTAGAAGA+GGG | - | 33182:2770-2789 | MS.gene49875:intron | 40.0% | |
| GTTGCGTACAATACACCAAA+TGG | - | 33182:1210-1229 | MS.gene49875:CDS | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | 33182:1095-1114 | MS.gene49875:CDS | 40.0% | |
| TCAACAAAAAAAGGGCAACC+CGG | + | 33182:1280-1299 | MS.gene49875:intergenic | 40.0% | |
| TCTATACCTAACTACCTCGT+AGG | - | 33182:3854-3873 | MS.gene49875:CDS | 40.0% | |
| TCTTCTTTAGGTGAGAACCT+TGG | - | 33182:2302-2321 | MS.gene49875:CDS | 40.0% | |
| TGAGACCAGTTTGATATACG+GGG | - | 33182:3057-3076 | MS.gene49875:intron | 40.0% | |
| TGATAAGGTGTATACACAGG+CGG | - | 33182:1751-1770 | MS.gene49875:CDS | 40.0% | |
| TGTGTGTCGAAATGTAGAAG+AGG | - | 33182:2769-2788 | MS.gene49875:intron | 40.0% | |
| TTGTCAAGCAGTGAAACAAC+AGG | - | 33182:946-965 | MS.gene49875:intron | 40.0% | |
| ! | AGAGGGTTTCGTATTTTGTG+GGG | - | 33182:2787-2806 | MS.gene49875:intron | 40.0% |
| ! | GAAAAAAGGTCTAAGGCTTC+TGG | - | 33182:4079-4098 | MS.gene49875:CDS | 40.0% |
| ! | GAAGAGGGTTTCGTATTTTG+TGG | - | 33182:2785-2804 | MS.gene49875:intron | 40.0% |
| ! | GCCCAGTGTTTTTCTGATTT+GGG | - | 33182:4211-4230 | MS.gene49875:CDS | 40.0% |
| ! | TCAGAAGAATGGATTTCTCG+TGG | - | 33182:3701-3720 | MS.gene49875:intron | 40.0% |
| ! | TCTGGATGAATCTAGCTTCT+TGG | + | 33182:2426-2445 | MS.gene49875:intergenic | 40.0% |
| ! | TGACGCTCGATTTTCAAACA+AGG | + | 33182:2537-2556 | MS.gene49875:intergenic | 40.0% |
| ! | TGCCCAGTGTTTTTCTGATT+TGG | - | 33182:4210-4229 | MS.gene49875:CDS | 40.0% |
| ! | TGGTGTAAGATCTGTTGCTT+TGG | - | 33182:2322-2341 | MS.gene49875:CDS | 40.0% |
| !! | AGTGGGAAAATTGTTGGCTT+TGG | - | 33182:3154-3173 | MS.gene49875:intron | 40.0% |
| !! | GTGGCAAAAAGGTTGTTTTG+CGG | - | 33182:3720-3739 | MS.gene49875:CDS | 40.0% |
| !!! | GGGAATTGATTTTAGGTTCC+AGG | - | 33182:2832-2851 | MS.gene49875:intron | 40.0% |
| AAAAGGGGGAATGCAATCTC+TGG | - | 33182:2472-2491 | MS.gene49875:CDS | 45.0% | |
| AAAGAAGCTCAATGGTGCTC+TGG | + | 33182:3000-3019 | MS.gene49875:intergenic | 45.0% | |
| AAATTTCACCAGCTTCCCTG+AGG | + | 33182:4162-4181 | MS.gene49875:intergenic | 45.0% | |
| AAGAAGCTCAATGGTGCTCT+GGG | + | 33182:2999-3018 | MS.gene49875:intergenic | 45.0% | |
| AATCTCTGGATCCTGGTGAA+GGG | - | 33182:2486-2505 | MS.gene49875:CDS | 45.0% | |
| AATGATGCTTGATGGGACTG+TGG | - | 33182:2247-2266 | MS.gene49875:CDS | 45.0% | |
| ACATGGTAAGGTTCAAGTCC+TGG | - | 33182:1157-1176 | MS.gene49875:CDS | 45.0% | |
| AGGATGCAAATGCAATCCTC+AGG | - | 33182:4143-4162 | MS.gene49875:CDS | 45.0% | |
| AGGATTGCATTTGCATCCTC+AGG | + | 33182:4142-4161 | MS.gene49875:intergenic | 45.0% | |
| ATACAGATTCATATGCGGCG+GGG | - | 33182:2085-2104 | MS.gene49875:CDS | 45.0% | |
| ATACTGCACAGACCATTGCA+AGG | - | 33182:2810-2829 | MS.gene49875:intron | 45.0% | |
| ATGATGCTTGATGGGACTGT+GGG | - | 33182:2248-2267 | MS.gene49875:CDS | 45.0% | |
| CAACTTTCATTGCCTGAGCA+AGG | + | 33182:3673-3692 | MS.gene49875:intergenic | 45.0% | |
| CATACAGATTCATATGCGGC+GGG | - | 33182:2084-2103 | MS.gene49875:CDS | 45.0% | |
| CTCGTACAAGACAGAGATTG+TGG | - | 33182:3558-3577 | MS.gene49875:intron | 45.0% | |
| GCAACATTGGACATGACAGT+GGG | - | 33182:3137-3156 | MS.gene49875:intron | 45.0% | |
| GCATACAGATTCATATGCGG+CGG | - | 33182:2083-2102 | MS.gene49875:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | 33182:1213-1232 | MS.gene49875:CDS | 45.0% | |
| GCTCCAGTTGTTCTTGAATG+TGG | - | 33182:3082-3101 | MS.gene49875:intron | 45.0% | |
| GGATGCAAATGCAATCCTCA+GGG | - | 33182:4144-4163 | MS.gene49875:CDS | 45.0% | |
| GGGGGATTAACACTAAGCAA+AGG | + | 33182:1845-1864 | MS.gene49875:intergenic | 45.0% | |
| GTGGATTTGCGAGAATACAG+AGG | - | 33182:3577-3596 | MS.gene49875:intron | 45.0% | |
| TACTGCACAGACCATTGCAA+GGG | - | 33182:2811-2830 | MS.gene49875:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+TGG | - | 33182:1102-1121 | MS.gene49875:CDS | 45.0% | |
| TTCATGCAGGAAATGTTGGG+GGG | + | 33182:1711-1730 | MS.gene49875:intergenic | 45.0% | |
| ! | ACAAGTGGATATGAGTTGGC+GGG | + | 33182:2206-2225 | MS.gene49875:intergenic | 45.0% |
| ! | CACAAGTGGATATGAGTTGG+CGG | + | 33182:2207-2226 | MS.gene49875:intergenic | 45.0% |
| ! | CCCCTCGTACACTAAGTTTT+TGG | - | 33182:1862-1881 | MS.gene49875:CDS | 45.0% |
| ! | CCGTATATCAAACTGGTCTC+AGG | + | 33182:3058-3077 | MS.gene49875:intergenic | 45.0% |
| ! | CTCCCTTTTCTGCTTGCTTA+AGG | + | 33182:2561-2580 | MS.gene49875:intergenic | 45.0% |
| ! | TGGAGCAGAGCAAGTGATTT+TGG | - | 33182:3174-3193 | MS.gene49875:intron | 45.0% |
| !! | AAAGTGCTGGGGACTCTTAT+TGG | - | 33182:4056-4075 | MS.gene49875:CDS | 45.0% |
| !! | AAGTGCTGGGGACTCTTATT+GGG | - | 33182:4057-4076 | MS.gene49875:CDS | 45.0% |
| !! | GTCTAAGGCTTCTGGTCTTA+GGG | - | 33182:4087-4106 | MS.gene49875:CDS | 45.0% |
| AAAACACTGGGCAGCAGACT+CGG | + | 33182:4203-4222 | MS.gene49874:intergenic | 50.0% | |
| AAGGTGTATACACAGGCGGA+TGG | - | 33182:1755-1774 | MS.gene49875:CDS | 50.0% | |
| AATGCAATCCTCAGGGAAGC+TGG | - | 33182:4151-4170 | MS.gene49875:CDS | 50.0% | |
| ACATTTGTACTGGGTCGCTC+TGG | - | 33182:728-747 | MS.gene49875:intron | 50.0% | |
| ACTGCACAGACCATTGCAAG+GGG | - | 33182:2812-2831 | MS.gene49875:intron | 50.0% | |
| ACTGGATGATTCCCTTGCTC+AGG | - | 33182:3658-3677 | MS.gene49875:intron | 50.0% | |
| AGCCTCCCCGTATATCAAAC+TGG | + | 33182:3065-3084 | MS.gene49875:intergenic | 50.0% | |
| ATGCGTGTTCAAGAGCTGCA+TGG | + | 33182:808-827 | MS.gene49875:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | 33182:1079-1098 | MS.gene49875:intergenic | 50.0% | |
| CAATCTCTGGATCCTGGTGA+AGG | - | 33182:2485-2504 | MS.gene49875:CDS | 50.0% | |
| CCAAGGTTACCCCTCACATA+AGG | + | 33182:1062-1081 | MS.gene49875:intergenic | 50.0% | |
| CCTTATGTGAGGGGTAACCT+TGG | - | 33182:1059-1078 | MS.gene49875:CDS | 50.0% | |
| CCTTCCGAGCGTAATCATCA+CGG | + | 33182:3201-3220 | MS.gene49875:intergenic | 50.0% | |
| GACCAGTTTGATATACGGGG+AGG | - | 33182:3060-3079 | MS.gene49875:intron | 50.0% | |
| GAGCTCAGGGAATAAACGTG+AGG | + | 33182:1994-2013 | MS.gene49875:intergenic | 50.0% | |
| GCAGCTCTTGAACACGCATA+TGG | - | 33182:809-828 | MS.gene49875:intron | 50.0% | |
| GGAATGCAATCTCTGGATCC+TGG | - | 33182:2479-2498 | MS.gene49875:CDS | 50.0% | |
| GGCAACATTGGACATGACAG+TGG | - | 33182:3136-3155 | MS.gene49875:intron | 50.0% | |
| GTGCAAAGGGCTTGAGTTTC+AGG | - | 33182:3270-3289 | MS.gene49875:intron | 50.0% | |
| TGATGCTTGATGGGACTGTG+GGG | - | 33182:2249-2268 | MS.gene49875:CDS | 50.0% | |
| TGGTCCGTGATGATTACGCT+CGG | - | 33182:3194-3213 | MS.gene49875:intron | 50.0% | |
| ! | GGTCTAAGGCTTCTGGTCTT+AGG | - | 33182:4086-4105 | MS.gene49875:CDS | 50.0% |
| !! | AAGGTCACTGGTTCAAGTCC+TGG | - | 33182:1114-1133 | MS.gene49875:CDS | 50.0% |
| ACTGAAGCTCCCGCATATGC+AGG | + | 33182:1254-1273 | MS.gene49875:intergenic | 55.0% | |
| CCGTGATGATTACGCTCGGA+AGG | - | 33182:3198-3217 | MS.gene49875:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | 33182:1253-1272 | MS.gene49875:intergenic | 55.0% | |
| TACTGGGTCGCTCTGGTACT+GGG | - | 33182:735-754 | MS.gene49875:intron | 55.0% | |
| TGAAGGGAAGTTGAGCCGTC+AGG | - | 33182:2502-2521 | MS.gene49875:CDS | 55.0% | |
| !! | GGCTTCTGGTCTTAGGGAGA+CGG | - | 33182:4093-4112 | MS.gene49875:CDS | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | 33182:1068-1087 | MS.gene49875:CDS | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | 33182:1258-1277 | MS.gene49875:CDS | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | 33182:1241-1260 | MS.gene49875:intergenic | 60.0% | |
| CGGCTCAACTTCCCTTCACC+AGG | + | 33182:2500-2519 | MS.gene49875:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | 33182:1241-1260 | MS.gene49875:CDS | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | 33182:1242-1261 | MS.gene49875:intergenic | 60.0% | |
| GTACTGGGTCGCTCTGGTAC+TGG | - | 33182:734-753 | MS.gene49875:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | 33182:1242-1261 | MS.gene49875:CDS | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | 33182:1226-1245 | MS.gene49875:CDS | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | + | 33182:1243-1262 | MS.gene49875:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | 33182:1228-1247 | MS.gene49875:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | 33182:1247-1266 | MS.gene49875:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | 33182:1248-1267 | MS.gene49875:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | 33182:1259-1278 | MS.gene49875:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 33182 | gene | 454 | 4250 | 454 | ID=MS.gene49875 |
| 33182 | mRNA | 454 | 4250 | 454 | ID=MS.gene49875.t1;Parent=MS.gene49875 |
| 33182 | exon | 3720 | 4250 | 3720 | ID=MS.gene49875.t1.exon1;Parent=MS.gene49875.t1 |
| 33182 | CDS | 3720 | 4250 | 3720 | ID=cds.MS.gene49875.t1;Parent=MS.gene49875.t1 |
| 33182 | exon | 1413 | 2613 | 1413 | ID=MS.gene49875.t1.exon2;Parent=MS.gene49875.t1 |
| 33182 | CDS | 1413 | 2613 | 1413 | ID=cds.MS.gene49875.t1;Parent=MS.gene49875.t1 |
| 33182 | exon | 974 | 1327 | 974 | ID=MS.gene49875.t1.exon3;Parent=MS.gene49875.t1 |
| 33182 | CDS | 974 | 1327 | 974 | ID=cds.MS.gene49875.t1;Parent=MS.gene49875.t1 |
| 33182 | exon | 454 | 691 | 454 | ID=MS.gene49875.t1.exon4;Parent=MS.gene49875.t1 |
| 33182 | CDS | 454 | 691 | 454 | ID=cds.MS.gene49875.t1;Parent=MS.gene49875.t1 |
| Gene Sequence |
| Protein sequence |
