Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057394.t1 | XP_003595315.1 | 97.7 | 132 | 3 | 0 | 1 | 132 | 1 | 132 | 1.30E-63 | 252.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057394.t1 | G7IGG4 | 97.7 | 132 | 3 | 0 | 1 | 132 | 1 | 132 | 9.3e-64 | 252.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene057394 | 0.804264 | 2.35E-49 | -1.69E-46 |
MS.gene049151 | MS.gene057394 | 0.82221 | 2.68E-53 | -1.69E-46 |
MS.gene049435 | MS.gene057394 | 0.801108 | 1.05E-48 | -1.69E-46 |
MS.gene050680 | MS.gene057394 | 0.831191 | 1.92E-55 | -1.69E-46 |
MS.gene050807 | MS.gene057394 | 0.803834 | 2.89E-49 | -1.69E-46 |
MS.gene052426 | MS.gene057394 | 0.811252 | 7.68E-51 | -1.69E-46 |
MS.gene053074 | MS.gene057394 | 0.805915 | 1.06E-49 | -1.69E-46 |
MS.gene053166 | MS.gene057394 | 0.8111 | 8.29E-51 | -1.69E-46 |
MS.gene053494 | MS.gene057394 | 0.845468 | 3.99E-59 | -1.69E-46 |
MS.gene053555 | MS.gene057394 | 0.801712 | 7.91E-49 | -1.69E-46 |
MS.gene054379 | MS.gene057394 | 0.815864 | 7.43E-52 | -1.69E-46 |
MS.gene054559 | MS.gene057394 | 0.811798 | 5.85E-51 | -1.69E-46 |
MS.gene05510 | MS.gene057394 | 0.834979 | 2.19E-56 | -1.69E-46 |
MS.gene055701 | MS.gene057394 | 0.820212 | 7.73E-53 | -1.69E-46 |
MS.gene057394 | MS.gene057395 | 0.826182 | 3.12E-54 | -1.69E-46 |
MS.gene057394 | MS.gene057750 | 0.820092 | 8.23E-53 | -1.69E-46 |
MS.gene057394 | MS.gene057869 | 0.800306 | 1.53E-48 | -1.69E-46 |
MS.gene057394 | MS.gene058146 | 0.80382 | 2.90E-49 | -1.69E-46 |
MS.gene057394 | MS.gene058595 | 0.801638 | 8.19E-49 | -1.69E-46 |
MS.gene057394 | MS.gene059128 | 0.828112 | 1.08E-54 | -1.69E-46 |
MS.gene057394 | MS.gene060998 | 0.828814 | 7.29E-55 | -1.69E-46 |
MS.gene057394 | MS.gene061333 | 0.806052 | 9.92E-50 | -1.69E-46 |
MS.gene057394 | MS.gene063876 | 0.80262 | 5.14E-49 | -1.69E-46 |
MS.gene057394 | MS.gene064070 | 0.800566 | 1.36E-48 | -1.69E-46 |
MS.gene057394 | MS.gene064524 | 0.805093 | 1.58E-49 | -1.69E-46 |
MS.gene057394 | MS.gene066206 | 0.833531 | 5.06E-56 | -1.69E-46 |
MS.gene057394 | MS.gene066433 | 0.811761 | 5.96E-51 | -1.69E-46 |
MS.gene057394 | MS.gene067566 | 0.830411 | 2.98E-55 | -1.69E-46 |
MS.gene057394 | MS.gene069554 | 0.808018 | 3.81E-50 | -1.69E-46 |
MS.gene057394 | MS.gene20184 | 0.807265 | 5.50E-50 | -1.69E-46 |
MS.gene057394 | MS.gene22091 | 0.805611 | 1.23E-49 | -1.69E-46 |
MS.gene057394 | MS.gene22731 | 0.831113 | 2.01E-55 | -1.69E-46 |
MS.gene057394 | MS.gene23105 | 0.805071 | 1.59E-49 | -1.69E-46 |
MS.gene057394 | MS.gene24337 | 0.803147 | 4.00E-49 | -1.69E-46 |
MS.gene057394 | MS.gene25868 | 0.821294 | 4.36E-53 | -1.69E-46 |
MS.gene057394 | MS.gene26514 | 0.83542 | 1.70E-56 | -1.69E-46 |
MS.gene057394 | MS.gene27008 | 0.836943 | 6.96E-57 | -1.69E-46 |
MS.gene057394 | MS.gene27271 | 0.833481 | 5.20E-56 | -1.69E-46 |
MS.gene057394 | MS.gene29405 | 0.829959 | 3.84E-55 | -1.69E-46 |
MS.gene057394 | MS.gene29773 | 0.806886 | 6.61E-50 | -1.69E-46 |
MS.gene057394 | MS.gene31604 | 0.810322 | 1.22E-50 | -1.69E-46 |
MS.gene057394 | MS.gene31609 | 0.811819 | 5.79E-51 | -1.69E-46 |
MS.gene057394 | MS.gene35408 | 0.818507 | 1.89E-52 | -1.69E-46 |
MS.gene057394 | MS.gene35808 | 0.831637 | 1.49E-55 | -1.69E-46 |
MS.gene057394 | MS.gene35822 | 0.800749 | 1.25E-48 | -1.69E-46 |
MS.gene057394 | MS.gene35824 | 0.803661 | 3.13E-49 | -1.69E-46 |
MS.gene057394 | MS.gene35867 | 0.813908 | 2.02E-51 | -1.69E-46 |
MS.gene057394 | MS.gene36061 | 0.80751 | 4.88E-50 | -1.69E-46 |
MS.gene057394 | MS.gene37517 | 0.810159 | 1.32E-50 | -1.69E-46 |
MS.gene057394 | MS.gene39638 | 0.837075 | 6.44E-57 | -1.69E-46 |
MS.gene057394 | MS.gene41037 | 0.806865 | 6.68E-50 | -1.69E-46 |
MS.gene057394 | MS.gene43430 | 0.803967 | 2.71E-49 | -1.69E-46 |
MS.gene057394 | MS.gene43973 | 0.80158 | 8.42E-49 | -1.69E-46 |
MS.gene057394 | MS.gene48988 | 0.81005 | 1.40E-50 | -1.69E-46 |
MS.gene057394 | MS.gene49486 | 0.814514 | 1.48E-51 | -1.69E-46 |
MS.gene057394 | MS.gene49875 | 0.823454 | 1.37E-53 | -1.69E-46 |
MS.gene057394 | MS.gene49940 | 0.819981 | 8.73E-53 | -1.69E-46 |
MS.gene057394 | MS.gene52448 | 0.814414 | 1.56E-51 | -1.69E-46 |
MS.gene057394 | MS.gene53586 | 0.805114 | 1.56E-49 | -1.69E-46 |
MS.gene057394 | MS.gene54020 | 0.817069 | 3.99E-52 | -1.69E-46 |
MS.gene057394 | MS.gene55357 | 0.805708 | 1.17E-49 | -1.69E-46 |
MS.gene057394 | MS.gene55566 | 0.801224 | 9.96E-49 | -1.69E-46 |
MS.gene057394 | MS.gene56018 | 0.81718 | 3.77E-52 | -1.69E-46 |
MS.gene057394 | MS.gene56053 | 0.836356 | 9.82E-57 | -1.69E-46 |
MS.gene057394 | MS.gene56057 | 0.800365 | 1.49E-48 | -1.69E-46 |
MS.gene057394 | MS.gene56431 | 0.848563 | 5.66E-60 | -1.69E-46 |
MS.gene057394 | MS.gene59206 | 0.800548 | 1.37E-48 | -1.69E-46 |
MS.gene057394 | MS.gene61435 | 0.801349 | 9.39E-49 | -1.69E-46 |
MS.gene057394 | MS.gene62480 | 0.802443 | 5.60E-49 | -1.69E-46 |
MS.gene057394 | MS.gene63058 | 0.802149 | 6.43E-49 | -1.69E-46 |
MS.gene057394 | MS.gene63426 | 0.825256 | 5.18E-54 | -1.69E-46 |
MS.gene057394 | MS.gene66964 | 0.831809 | 1.35E-55 | -1.69E-46 |
MS.gene057394 | MS.gene67574 | 0.802489 | 5.48E-49 | -1.69E-46 |
MS.gene057394 | MS.gene68923 | 0.840964 | 6.33E-58 | -1.69E-46 |
MS.gene057394 | MS.gene69794 | 0.841571 | 4.38E-58 | -1.69E-46 |
MS.gene057394 | MS.gene70021 | 0.826931 | 2.07E-54 | -1.69E-46 |
MS.gene057394 | MS.gene70022 | 0.812616 | 3.88E-51 | -1.69E-46 |
MS.gene057394 | MS.gene71443 | 0.818593 | 1.81E-52 | -1.69E-46 |
MS.gene057394 | MS.gene72268 | 0.80443 | 2.17E-49 | -1.69E-46 |
MS.gene057394 | MS.gene73140 | 0.804842 | 1.78E-49 | -1.69E-46 |
MS.gene057394 | MS.gene73257 | 0.802175 | 6.36E-49 | -1.69E-46 |
MS.gene057394 | MS.gene78492 | 0.809136 | 2.20E-50 | -1.69E-46 |
MS.gene057394 | MS.gene80273 | 0.806614 | 7.55E-50 | -1.69E-46 |
MS.gene057394 | MS.gene80298 | 0.802676 | 5.01E-49 | -1.69E-46 |
MS.gene057394 | MS.gene81066 | 0.800428 | 1.45E-48 | -1.69E-46 |
MS.gene057394 | MS.gene82879 | 0.811037 | 8.55E-51 | -1.69E-46 |
MS.gene057394 | MS.gene84326 | 0.827407 | 1.59E-54 | -1.69E-46 |
MS.gene057394 | MS.gene84401 | 0.806659 | 7.39E-50 | -1.69E-46 |
MS.gene057394 | MS.gene87264 | 0.820373 | 7.10E-53 | -1.69E-46 |
MS.gene057394 | MS.gene87669 | 0.831714 | 1.43E-55 | -1.69E-46 |
MS.gene057394 | MS.gene87987 | 0.832284 | 1.03E-55 | -1.69E-46 |
MS.gene057394 | MS.gene90729 | 0.815356 | 9.64E-52 | -1.69E-46 |
MS.gene057394 | MS.gene91809 | 0.829534 | 4.88E-55 | -1.69E-46 |
MS.gene057394 | MS.gene91907 | 0.807497 | 4.91E-50 | -1.69E-46 |
MS.gene057394 | MS.gene93887 | 0.823697 | 1.20E-53 | -1.69E-46 |
MS.gene057394 | MS.gene93888 | 0.812732 | 3.66E-51 | -1.69E-46 |
MS.gene057394 | MS.gene93890 | 0.820155 | 7.96E-53 | -1.69E-46 |
MS.gene057394 | MS.gene95377 | 0.809177 | 2.15E-50 | -1.69E-46 |
MS.gene057394 | MS.gene97270 | 0.808732 | 2.68E-50 | -1.69E-46 |
MS.gene057394 | MS.gene98543 | 0.801186 | 1.01E-48 | -1.69E-46 |
MS.gene057394 | MS.gene99802 | 0.837132 | 6.23E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057394.t1 | MTR_2g042420 | 97.727 | 132 | 3 | 0 | 1 | 132 | 1 | 132 | 2.17e-88 | 261 |
MS.gene057394.t1 | MTR_2g042370 | 89.474 | 133 | 10 | 2 | 4 | 132 | 8 | 140 | 1.38e-75 | 228 |
MS.gene057394.t1 | MTR_2g042430 | 88.148 | 135 | 13 | 1 | 1 | 132 | 17 | 151 | 7.48e-75 | 227 |
MS.gene057394.t1 | MTR_8g074170 | 33.071 | 127 | 75 | 6 | 6 | 124 | 22 | 146 | 2.98e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 30 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATGGTTAGGAATGGAAAT+TGG | 0.237351 | 2.1:+50729349 | MS.gene057394:CDS |
TTATCCACACAAACATCTTC+TGG | 0.304876 | 2.1:-50729282 | None:intergenic |
TTCAAGAGAAACTGGATCTA+TGG | 0.319662 | 2.1:-50729079 | None:intergenic |
GGAATGGAAATTGGGAGAAT+TGG | 0.337340 | 2.1:+50729358 | MS.gene057394:CDS |
AGTGGTATTTCAAGAGAAAC+TGG | 0.369140 | 2.1:-50729087 | None:intergenic |
ATAGATAGCTCTTCTTTGCT+TGG | 0.400675 | 2.1:+50729387 | MS.gene057394:CDS |
CATCTCTTGTACCTGTATAT+AGG | 0.404937 | 2.1:-50729314 | None:intergenic |
TAATAGAGTGTGATTAAACT+TGG | 0.423287 | 2.1:+50729240 | MS.gene057394:intron |
TTACTAAAGGTTACGGAAGA+TGG | 0.426711 | 2.1:+50729637 | MS.gene057394:CDS |
AATGGTTAGGAATGGAAATT+GGG | 0.437047 | 2.1:+50729350 | MS.gene057394:CDS |
AGATGGTTGGATTAAAAGAA+TGG | 0.447747 | 2.1:+50729332 | MS.gene057394:CDS |
GTTGGATTAAAAGAATGGTT+AGG | 0.454450 | 2.1:+50729337 | MS.gene057394:CDS |
GCAGGGTTTACTAAAGGTTA+CGG | 0.469389 | 2.1:+50729630 | MS.gene057394:intron |
TATTATGCAGGGTTTACTAA+AGG | 0.479194 | 2.1:+50729624 | MS.gene057394:intron |
CATTGTTTGTGATACTACCT+TGG | 0.491818 | 2.1:+50729437 | MS.gene057394:CDS |
AAAGATGGTGTCCTATATAC+AGG | 0.496262 | 2.1:+50729303 | MS.gene057394:CDS |
GAGAACCATTTACTTGTGAA+AGG | 0.496653 | 2.1:-50729672 | None:intergenic |
ATTAAAAGAATGGTTAGGAA+TGG | 0.506704 | 2.1:+50729342 | MS.gene057394:CDS |
TCAAGAGAAACTGGATCTAT+GGG | 0.525446 | 2.1:-50729078 | None:intergenic |
GGAATCACAACATCTAAAGA+TGG | 0.552529 | 2.1:+50729408 | MS.gene057394:CDS |
TGTATTACTTAATTTAAGCA+TGG | 0.560401 | 2.1:-50729762 | None:intergenic |
AGTGTGATTAAACTTGGAGA+AGG | 0.571921 | 2.1:+50729246 | MS.gene057394:CDS |
TTGGTCGAAGATACAGAAAG+TGG | 0.582391 | 2.1:-50729105 | None:intergenic |
ATACAGGTACAAGAGATGGT+TGG | 0.583282 | 2.1:+50729319 | MS.gene057394:CDS |
AATGGCACTAACCTCAAGCT+TGG | 0.590599 | 2.1:+50729008 | None:intergenic |
CTATATACAGGTACAAGAGA+TGG | 0.609427 | 2.1:+50729315 | MS.gene057394:CDS |
GATGTTTGTGTGGATAAAGA+TGG | 0.610609 | 2.1:+50729288 | MS.gene057394:CDS |
ATCACAACATCTAAAGATGG+TGG | 0.643963 | 2.1:+50729411 | MS.gene057394:CDS |
AGCTGCTAGAACCAAGCTTG+AGG | 0.656502 | 2.1:-50729019 | None:intergenic |
GCAACCAGAAGATGTTTGTG+TGG | 0.684744 | 2.1:+50729278 | MS.gene057394:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCATAATAAATTATTTGTTT+GGG | - | chr2.1:50729711-50729730 | None:intergenic | 10.0% |
!! | CTCATAATAAATTATTTGTT+TGG | - | chr2.1:50729712-50729731 | None:intergenic | 15.0% |
!! | AACACATAATTATATTATGC+AGG | + | chr2.1:50729612-50729631 | MS.gene057394:intron | 20.0% |
!! | ACACATAATTATATTATGCA+GGG | + | chr2.1:50729613-50729632 | MS.gene057394:intron | 20.0% |
!!! | TAATCATTTAGGATTTATCT+TGG | - | chr2.1:50729521-50729540 | None:intergenic | 20.0% |
!!! | TATGTGTTGTTTAATCATTT+AGG | - | chr2.1:50729532-50729551 | None:intergenic | 20.0% |
! | ATTAAAAGAATGGTTAGGAA+TGG | + | chr2.1:50729342-50729361 | MS.gene057394:CDS | 25.0% |
! | TAATAGAGTGTGATTAAACT+TGG | + | chr2.1:50729240-50729259 | MS.gene057394:intron | 25.0% |
AATGGTTAGGAATGGAAATT+GGG | + | chr2.1:50729350-50729369 | MS.gene057394:CDS | 30.0% | |
AGATGGTTGGATTAAAAGAA+TGG | + | chr2.1:50729332-50729351 | MS.gene057394:CDS | 30.0% | |
ATGGATGAACTGAACAAAAT+AGG | - | chr2.1:50729746-50729765 | None:intergenic | 30.0% | |
CAAGCATGAATTATTTACCA+AGG | - | chr2.1:50729457-50729476 | None:intergenic | 30.0% | |
CAATTACAGGTGAAAACTTA+AGG | + | chr2.1:50729135-50729154 | MS.gene057394:intron | 30.0% | |
CTTGGTAAATAATTCATGCT+TGG | + | chr2.1:50729455-50729474 | MS.gene057394:intron | 30.0% | |
GTTATCCTTTCACAAGTAAA+TGG | + | chr2.1:50729667-50729686 | MS.gene057394:intron | 30.0% | |
GTTGGATTAAAAGAATGGTT+AGG | + | chr2.1:50729337-50729356 | MS.gene057394:CDS | 30.0% | |
TATTATGCAGGGTTTACTAA+AGG | + | chr2.1:50729624-50729643 | MS.gene057394:intron | 30.0% | |
TTGGACATATATGTGCTTAT+TGG | - | chr2.1:50729502-50729521 | None:intergenic | 30.0% | |
! | CTTAAGTTTTCACCTGTAAT+TGG | - | chr2.1:50729137-50729156 | None:intergenic | 30.0% |
AAAGATGGTGTCCTATATAC+AGG | + | chr2.1:50729303-50729322 | MS.gene057394:CDS | 35.0% | |
AGTGGTATTTCAAGAGAAAC+TGG | - | chr2.1:50729090-50729109 | None:intergenic | 35.0% | |
AGTGTGATTAAACTTGGAGA+AGG | + | chr2.1:50729246-50729265 | MS.gene057394:CDS | 35.0% | |
ATAGATAGCTCTTCTTTGCT+TGG | + | chr2.1:50729387-50729406 | MS.gene057394:CDS | 35.0% | |
ATCACAACATCTAAAGATGG+TGG | + | chr2.1:50729411-50729430 | MS.gene057394:CDS | 35.0% | |
CATCTCTTGTACCTGTATAT+AGG | - | chr2.1:50729317-50729336 | None:intergenic | 35.0% | |
CATTGTTTGTGATACTACCT+TGG | + | chr2.1:50729437-50729456 | MS.gene057394:CDS | 35.0% | |
CTATATACAGGTACAAGAGA+TGG | + | chr2.1:50729315-50729334 | MS.gene057394:CDS | 35.0% | |
GAATGGTTAGGAATGGAAAT+TGG | + | chr2.1:50729349-50729368 | MS.gene057394:CDS | 35.0% | |
GACCAAAAACAACCAATTAC+AGG | + | chr2.1:50729122-50729141 | MS.gene057394:CDS | 35.0% | |
GAGAACCATTTACTTGTGAA+AGG | - | chr2.1:50729675-50729694 | None:intergenic | 35.0% | |
GATGTTTGTGTGGATAAAGA+TGG | + | chr2.1:50729288-50729307 | MS.gene057394:CDS | 35.0% | |
GGAATCACAACATCTAAAGA+TGG | + | chr2.1:50729408-50729427 | MS.gene057394:CDS | 35.0% | |
TCAAGAGAAACTGGATCTAT+GGG | - | chr2.1:50729081-50729100 | None:intergenic | 35.0% | |
TTACTAAAGGTTACGGAAGA+TGG | + | chr2.1:50729637-50729656 | MS.gene057394:CDS | 35.0% | |
TTATCCACACAAACATCTTC+TGG | - | chr2.1:50729285-50729304 | None:intergenic | 35.0% | |
TTCAAGAGAAACTGGATCTA+TGG | - | chr2.1:50729082-50729101 | None:intergenic | 35.0% | |
!! | CACCTGTAATTGGTTGTTTT+TGG | - | chr2.1:50729127-50729146 | None:intergenic | 35.0% |
ATACAGGTACAAGAGATGGT+TGG | + | chr2.1:50729319-50729338 | MS.gene057394:CDS | 40.0% | |
GCAGGGTTTACTAAAGGTTA+CGG | + | chr2.1:50729630-50729649 | MS.gene057394:intron | 40.0% | |
GGAATGGAAATTGGGAGAAT+TGG | + | chr2.1:50729358-50729377 | MS.gene057394:CDS | 40.0% | |
TTGGTCGAAGATACAGAAAG+TGG | - | chr2.1:50729108-50729127 | None:intergenic | 40.0% | |
GCAACCAGAAGATGTTTGTG+TGG | + | chr2.1:50729278-50729297 | MS.gene057394:CDS | 45.0% | |
AGCTGCTAGAACCAAGCTTG+AGG | - | chr2.1:50729022-50729041 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 50729009 | 50729771 | 50729009 | ID=MS.gene057394 |
chr2.1 | mRNA | 50729009 | 50729771 | 50729009 | ID=MS.gene057394.t1;Parent=MS.gene057394 |
chr2.1 | exon | 50729009 | 50729143 | 50729009 | ID=MS.gene057394.t1.exon1;Parent=MS.gene057394.t1 |
chr2.1 | CDS | 50729009 | 50729143 | 50729009 | ID=cds.MS.gene057394.t1;Parent=MS.gene057394.t1 |
chr2.1 | exon | 50729246 | 50729458 | 50729246 | ID=MS.gene057394.t1.exon2;Parent=MS.gene057394.t1 |
chr2.1 | CDS | 50729246 | 50729458 | 50729246 | ID=cds.MS.gene057394.t1;Parent=MS.gene057394.t1 |
chr2.1 | exon | 50729634 | 50729681 | 50729634 | ID=MS.gene057394.t1.exon3;Parent=MS.gene057394.t1 |
chr2.1 | CDS | 50729634 | 50729681 | 50729634 | ID=cds.MS.gene057394.t1;Parent=MS.gene057394.t1 |
chr2.1 | exon | 50729757 | 50729771 | 50729757 | ID=MS.gene057394.t1.exon4;Parent=MS.gene057394.t1 |
chr2.1 | CDS | 50729757 | 50729771 | 50729757 | ID=cds.MS.gene057394.t1;Parent=MS.gene057394.t1 |
Gene Sequence |
Protein sequence |