Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50055.t1 | XP_013456384.1 | 93.3 | 359 | 24 | 0 | 1 | 359 | 80 | 438 | 1.90E-191 | 678.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50055.t1 | Q9LN62 | 74.4 | 359 | 90 | 2 | 1 | 358 | 71 | 428 | 8.8e-153 | 541.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50055.t1 | A0A072UX35 | 93.3 | 359 | 24 | 0 | 1 | 359 | 80 | 438 | 1.4e-191 | 678.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051552 | MS.gene50055 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene50055 | 0.822672 | 2.09E-53 | -1.69E-46 |
| MS.gene052223 | MS.gene50055 | 0.827196 | 1.79E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene50055 | 0.839218 | 1.81E-57 | -1.69E-46 |
| MS.gene056330 | MS.gene50055 | 0.818571 | 1.83E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene50055 | 0.87863 | 2.40E-69 | -1.69E-46 |
| MS.gene056920 | MS.gene50055 | 0.830312 | 3.15E-55 | -1.69E-46 |
| MS.gene056924 | MS.gene50055 | 0.81243 | 4.26E-51 | -1.69E-46 |
| MS.gene058418 | MS.gene50055 | 0.808985 | 2.37E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene50055 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene059892 | MS.gene50055 | 0.80506 | 1.60E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene50055 | 0.816606 | 5.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50055.t1 | MTR_4g069300 | 93.315 | 359 | 24 | 0 | 1 | 359 | 80 | 438 | 0.0 | 700 |
| MS.gene50055.t1 | MTR_4g069260 | 87.187 | 359 | 45 | 1 | 1 | 359 | 80 | 437 | 0.0 | 664 |
| MS.gene50055.t1 | MTR_4g069420 | 83.708 | 356 | 58 | 0 | 2 | 357 | 72 | 427 | 0.0 | 624 |
| MS.gene50055.t1 | MTR_4g069350 | 84.874 | 357 | 47 | 1 | 1 | 357 | 80 | 429 | 0.0 | 623 |
| MS.gene50055.t1 | MTR_4g069390 | 83.754 | 357 | 53 | 1 | 1 | 357 | 1 | 352 | 0.0 | 623 |
| MS.gene50055.t1 | MTR_4g069430 | 87.719 | 342 | 37 | 1 | 16 | 357 | 84 | 420 | 0.0 | 616 |
| MS.gene50055.t1 | MTR_1g022025 | 76.012 | 346 | 83 | 0 | 12 | 357 | 82 | 427 | 0.0 | 573 |
| MS.gene50055.t1 | MTR_8g069400 | 28.351 | 194 | 110 | 8 | 87 | 272 | 1390 | 1562 | 8.82e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50055.t1 | AT1G19360 | 74.373 | 359 | 90 | 2 | 1 | 358 | 71 | 428 | 0.0 | 561 |
| MS.gene50055.t1 | AT1G19360 | 74.373 | 359 | 90 | 2 | 1 | 358 | 71 | 428 | 0.0 | 561 |
| MS.gene50055.t1 | AT1G75110 | 72.269 | 357 | 98 | 1 | 1 | 357 | 72 | 427 | 0.0 | 554 |
| MS.gene50055.t1 | AT1G75120 | 66.947 | 357 | 105 | 3 | 1 | 357 | 59 | 402 | 6.95e-177 | 497 |
Find 77 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCTTCAATTGAGCTTT+TGG | 0.172013 | 4.2:+37371911 | MS.gene50055:CDS |
| AGGATATGGGTTTACAATTC+TGG | 0.249487 | 4.2:+37371867 | MS.gene50055:CDS |
| TTCATTCGCCGAAGCTTATC+AGG | 0.266822 | 4.2:-37372155 | None:intergenic |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4.2:+37371786 | MS.gene50055:CDS |
| GGAGGGAGAGCAGCTGTCTC+TGG | 0.299812 | 4.2:+37371627 | MS.gene50055:CDS |
| TAGTTCATACCACGAGGATA+TGG | 0.304296 | 4.2:+37371853 | MS.gene50055:CDS |
| AAGGCAACAACTAGATAATT+AGG | 0.329864 | 4.2:-37371513 | None:intergenic |
| TCATGCTTCTAAAAGAACTA+TGG | 0.336021 | 4.2:+37372031 | MS.gene50055:CDS |
| GCTTCTTGCATTAGGTAAAC+AGG | 0.362356 | 4.2:+37371293 | MS.gene50055:CDS |
| TCTAATATATTTGCCAATCT+CGG | 0.386117 | 4.2:-37371390 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4.2:-37372128 | None:intergenic |
| GTTGTTGATTATTATGTCAA+TGG | 0.405758 | 4.2:+37372182 | MS.gene50055:CDS |
| TATACCGACTCTCTTGATAT+TGG | 0.413611 | 4.2:-37371490 | None:intergenic |
| AAAGAGTTCTTCATTGAAAA+CGG | 0.417137 | 4.2:-37371979 | None:intergenic |
| AACAGTAGGATTGGTTCTTA+AGG | 0.420894 | 4.2:-37371346 | None:intergenic |
| GGTTACCACTTTGAGCCATC+AGG | 0.421929 | 4.2:-37372230 | None:intergenic |
| CTAATATATTTGCCAATCTC+GGG | 0.422456 | 4.2:-37371389 | None:intergenic |
| CCTTGCAAACTCCAATGTTA+AGG | 0.426563 | 4.2:+37371446 | MS.gene50055:CDS |
| CATGTTAAAATCAGAATTTG+TGG | 0.440337 | 4.2:+37371170 | None:intergenic |
| TTGTTGATTATTATGTCAAT+GGG | 0.453648 | 4.2:+37372183 | MS.gene50055:CDS |
| TTGGTCCCATGCTTTCTCCT+TGG | 0.456387 | 4.2:-37371955 | None:intergenic |
| CCGTCCCATCCTGGTTATGA+CGG | 0.460145 | 4.2:+37372005 | MS.gene50055:CDS |
| CTCGGGTTCACGGATTCATC+AGG | 0.461693 | 4.2:-37371372 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4.2:-37371906 | None:intergenic |
| ACAGTATCAATACCATCATC+CGG | 0.475603 | 4.2:-37371594 | None:intergenic |
| AGTTCATACCACGAGGATAT+GGG | 0.478586 | 4.2:+37371854 | MS.gene50055:CDS |
| TGAATCCGTGAACCCGAGAT+TGG | 0.481653 | 4.2:+37371377 | MS.gene50055:CDS |
| TTAAGGAGACCCTCGAGGTC+TGG | 0.486077 | 4.2:+37371463 | MS.gene50055:CDS |
| ATCAGGAGCAACAGTAGGAT+TGG | 0.486219 | 4.2:-37371355 | None:intergenic |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.491186 | 4.2:-37371910 | None:intergenic |
| GGAAAGGTTTGAGAGCATCT+TGG | 0.491288 | 4.2:-37372208 | None:intergenic |
| TACAAAAGAGACCCGGATGA+TGG | 0.496519 | 4.2:+37371582 | MS.gene50055:CDS |
| TAACCTCAGTAAATTAAAAC+CGG | 0.496942 | 4.2:+37372109 | MS.gene50055:CDS |
| CACTTTGAGCCATCAGGGAA+AGG | 0.502373 | 4.2:-37372224 | None:intergenic |
| CGATCCAAAAGCTCAATTGA+AGG | 0.505035 | 4.2:-37371915 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4.2:-37371735 | None:intergenic |
| ATTTGCCAATCTCGGGTTCA+CGG | 0.510225 | 4.2:-37371382 | None:intergenic |
| CTTTGAAATTTCCTCGTCGA+AGG | 0.515983 | 4.2:-37371532 | None:intergenic |
| CCTTAACATTGGAGTTTGCA+AGG | 0.516596 | 4.2:-37371446 | None:intergenic |
| GAGGGAGAGCAGCTGTCTCT+GGG | 0.517475 | 4.2:+37371628 | MS.gene50055:CDS |
| AGGCTTCAGCTTGCAGAGCA+AGG | 0.524017 | 4.2:+37371249 | MS.gene50055:CDS |
| GGCTTTCCAAGGAGAAAGCA+TGG | 0.525521 | 4.2:+37371949 | MS.gene50055:CDS |
| CGTCCCATCCTGGTTATGAC+GGG | 0.529822 | 4.2:+37372006 | MS.gene50055:CDS |
| GTTCTTCATTGAAAACGGCT+TGG | 0.536649 | 4.2:-37371974 | None:intergenic |
| ATTACCATCCTGATAAGCTT+CGG | 0.537140 | 4.2:+37372147 | MS.gene50055:CDS |
| TATCTATGATGAACCCGTGA+TGG | 0.554851 | 4.2:+37371818 | MS.gene50055:CDS |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4.2:-37372014 | None:intergenic |
| CTTAACATTGGAGTTTGCAA+GGG | 0.559512 | 4.2:-37371445 | None:intergenic |
| GCTCTCAAACCTTTCCCTGA+TGG | 0.559523 | 4.2:+37372215 | MS.gene50055:CDS |
| GTTACCACTTTGAGCCATCA+GGG | 0.562119 | 4.2:-37372229 | None:intergenic |
| CTCGAGGGTCTCCTTAACAT+TGG | 0.565730 | 4.2:-37371457 | None:intergenic |
| TAATCGAGACCAACCCATCA+CGG | 0.595014 | 4.2:-37371832 | None:intergenic |
| GAAGCCCGTCATAACCAGGA+TGG | 0.597381 | 4.2:-37372010 | None:intergenic |
| AATCGAGACCAACCCATCAC+GGG | 0.597461 | 4.2:-37371831 | None:intergenic |
| AAGGCCTTGACAGTACCAAA+AGG | 0.598804 | 4.2:-37371327 | None:intergenic |
| AAGCCCGTCATAACCAGGAT+GGG | 0.599228 | 4.2:-37372009 | None:intergenic |
| AGGTGAGTGAGTTGACAGAA+AGG | 0.599718 | 4.2:+37371229 | MS.gene50055:CDS |
| TGTCGCGACAAGGCTTTCCA+AGG | 0.604324 | 4.2:+37371938 | MS.gene50055:CDS |
| TGCAGAGCAAGGAAAAGACC+AGG | 0.607035 | 4.2:+37371260 | MS.gene50055:CDS |
| TTCGCCGAAGCTTATCAGGA+TGG | 0.615270 | 4.2:-37372151 | None:intergenic |
| CCGTCATAACCAGGATGGGA+CGG | 0.618599 | 4.2:-37372005 | None:intergenic |
| CAGTATCAATACCATCATCC+GGG | 0.624695 | 4.2:-37371593 | None:intergenic |
| GATTCATCAGGAGCAACAGT+AGG | 0.626788 | 4.2:-37371360 | None:intergenic |
| ATGATGAACCCGTGATGGGT+TGG | 0.627261 | 4.2:+37371823 | MS.gene50055:CDS |
| ATCTATGATGAACCCGTGAT+GGG | 0.629134 | 4.2:+37371819 | MS.gene50055:CDS |
| TTCACCAATATCAAGAGAGT+CGG | 0.631376 | 4.2:+37371486 | MS.gene50055:CDS |
| GATGATGGTATTGATACTGT+TGG | 0.643432 | 4.2:+37371597 | MS.gene50055:CDS |
| TTGACTCAACATCTGAATCA+CGG | 0.644066 | 4.2:-37371752 | None:intergenic |
| GCTTTCCAAGGAGAAAGCAT+GGG | 0.644753 | 4.2:+37371950 | MS.gene50055:CDS |
| CTTTCCCTGATGGCTCAAAG+TGG | 0.648347 | 4.2:+37372225 | MS.gene50055:CDS |
| TATTGGTGAACCAGACCTCG+AGG | 0.661264 | 4.2:-37371473 | None:intergenic |
| CTCGATTAGTTCATACCACG+AGG | 0.662449 | 4.2:+37371847 | MS.gene50055:CDS |
| GATGTTGAGTCAATGAGTGA+TGG | 0.668644 | 4.2:+37371762 | MS.gene50055:CDS |
| ATTGGTGAACCAGACCTCGA+GGG | 0.670776 | 4.2:-37371472 | None:intergenic |
| TCTAGTTGTTGCCTTCGACG+AGG | 0.686292 | 4.2:+37371521 | MS.gene50055:CDS |
| CAATGTTAAGGAGACCCTCG+AGG | 0.715442 | 4.2:+37371458 | MS.gene50055:CDS |
| ATTGTAAACCCATATCCTCG+TGG | 0.729649 | 4.2:-37371862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTGATTATTATGTCAAT+GGG | + | chr4.2:37372183-37372202 | MS.gene50055:CDS | 20.0% |
| ! | AAAGAGTTCTTCATTGAAAA+CGG | - | chr4.2:37371982-37372001 | None:intergenic | 25.0% |
| ! | ATTGATACTGTTGGAAAAAA+AGG | + | chr4.2:37371606-37371625 | MS.gene50055:CDS | 25.0% |
| ! | TAACCTCAGTAAATTAAAAC+CGG | + | chr4.2:37372109-37372128 | MS.gene50055:CDS | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | - | chr4.2:37372131-37372150 | None:intergenic | 25.0% |
| ! | TCTAATATATTTGCCAATCT+CGG | - | chr4.2:37371393-37371412 | None:intergenic | 25.0% |
| !! | GTTGTTGATTATTATGTCAA+TGG | + | chr4.2:37372182-37372201 | MS.gene50055:CDS | 25.0% |
| AAATGAACAGCTGAAAAAAC+AGG | + | chr4.2:37371209-37371228 | MS.gene50055:CDS | 30.0% | |
| AAGGCAACAACTAGATAATT+AGG | - | chr4.2:37371516-37371535 | None:intergenic | 30.0% | |
| ATACTGTTGGAAAAAAAGGA+GGG | + | chr4.2:37371610-37371629 | MS.gene50055:CDS | 30.0% | |
| CATAATAACATGACAGCTTA+TGG | + | chr4.2:37371786-37371805 | MS.gene50055:CDS | 30.0% | |
| CTAATATATTTGCCAATCTC+GGG | - | chr4.2:37371392-37371411 | None:intergenic | 30.0% | |
| GAAAAAATGCTTCTTGCATT+AGG | + | chr4.2:37371285-37371304 | MS.gene50055:CDS | 30.0% | |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4.2:37371666-37371685 | MS.gene50055:CDS | 30.0% |
| ! | TCATGCTTCTAAAAGAACTA+TGG | + | chr4.2:37372031-37372050 | MS.gene50055:CDS | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4.2:37371665-37371684 | MS.gene50055:CDS | 30.0% |
| !! | AAGTTCTTTTCAAGACAGTA+AGG | + | chr4.2:37372078-37372097 | MS.gene50055:CDS | 30.0% |
| !!! | TTACCGGTTTTAATTTACTG+AGG | - | chr4.2:37372115-37372134 | None:intergenic | 30.0% |
| ACAGTATCAATACCATCATC+CGG | - | chr4.2:37371597-37371616 | None:intergenic | 35.0% | |
| AGGATATGGGTTTACAATTC+TGG | + | chr4.2:37371867-37371886 | MS.gene50055:CDS | 35.0% | |
| ATTACCATCCTGATAAGCTT+CGG | + | chr4.2:37372147-37372166 | MS.gene50055:CDS | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | - | chr4.2:37371913-37371932 | None:intergenic | 35.0% | |
| CTTAACATTGGAGTTTGCAA+GGG | - | chr4.2:37371448-37371467 | None:intergenic | 35.0% | |
| GATACTGTTGGAAAAAAAGG+AGG | + | chr4.2:37371609-37371628 | MS.gene50055:CDS | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | - | chr4.2:37371738-37371757 | None:intergenic | 35.0% | |
| TTAGGTAAACAGGAAAAAGC+TGG | + | chr4.2:37371303-37371322 | MS.gene50055:CDS | 35.0% | |
| TTCACCAATATCAAGAGAGT+CGG | + | chr4.2:37371486-37371505 | MS.gene50055:CDS | 35.0% | |
| TTGACTCAACATCTGAATCA+CGG | - | chr4.2:37371755-37371774 | None:intergenic | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | + | chr4.2:37371911-37371930 | MS.gene50055:CDS | 35.0% |
| !! | AACAGTAGGATTGGTTCTTA+AGG | - | chr4.2:37371349-37371368 | None:intergenic | 35.0% |
| !! | GATGATGGTATTGATACTGT+TGG | + | chr4.2:37371597-37371616 | MS.gene50055:CDS | 35.0% |
| !! | TATACCGACTCTCTTGATAT+TGG | - | chr4.2:37371493-37371512 | None:intergenic | 35.0% |
| AGCTCAATTGAAGGAATGGT+TGG | - | chr4.2:37371909-37371928 | None:intergenic | 40.0% | |
| AGTTCATACCACGAGGATAT+GGG | + | chr4.2:37371854-37371873 | MS.gene50055:CDS | 40.0% | |
| ATCTATGATGAACCCGTGAT+GGG | + | chr4.2:37371819-37371838 | MS.gene50055:CDS | 40.0% | |
| ATTGTAAACCCATATCCTCG+TGG | - | chr4.2:37371865-37371884 | None:intergenic | 40.0% | |
| CAGTATCAATACCATCATCC+GGG | - | chr4.2:37371596-37371615 | None:intergenic | 40.0% | |
| CCTTAACATTGGAGTTTGCA+AGG | - | chr4.2:37371449-37371468 | None:intergenic | 40.0% | |
| CCTTGCAAACTCCAATGTTA+AGG | + | chr4.2:37371446-37371465 | MS.gene50055:CDS | 40.0% | |
| CGATCCAAAAGCTCAATTGA+AGG | - | chr4.2:37371918-37371937 | None:intergenic | 40.0% | |
| GATGTTGAGTCAATGAGTGA+TGG | + | chr4.2:37371762-37371781 | MS.gene50055:CDS | 40.0% | |
| GCTTCTTGCATTAGGTAAAC+AGG | + | chr4.2:37371293-37371312 | MS.gene50055:CDS | 40.0% | |
| GTTCTTCATTGAAAACGGCT+TGG | - | chr4.2:37371977-37371996 | None:intergenic | 40.0% | |
| TAGTTCATACCACGAGGATA+TGG | + | chr4.2:37371853-37371872 | MS.gene50055:CDS | 40.0% | |
| TATCTATGATGAACCCGTGA+TGG | + | chr4.2:37371818-37371837 | MS.gene50055:CDS | 40.0% | |
| ! | CCCATTTTACAAAAGAGACC+CGG | + | chr4.2:37371575-37371594 | MS.gene50055:CDS | 40.0% |
| ! | CCGGGTCTCTTTTGTAAAAT+GGG | - | chr4.2:37371578-37371597 | None:intergenic | 40.0% |
| ! | TCCGGGTCTCTTTTGTAAAA+TGG | - | chr4.2:37371579-37371598 | None:intergenic | 40.0% |
| !! | CTTTGAAATTTCCTCGTCGA+AGG | - | chr4.2:37371535-37371554 | None:intergenic | 40.0% |
| !!! | CAAGAAGCATTTTTTCTGCC+TGG | - | chr4.2:37371281-37371300 | None:intergenic | 40.0% |
| AAGGCCTTGACAGTACCAAA+AGG | - | chr4.2:37371330-37371349 | None:intergenic | 45.0% | |
| ATCAGGAGCAACAGTAGGAT+TGG | - | chr4.2:37371358-37371377 | None:intergenic | 45.0% | |
| ATTTGCCAATCTCGGGTTCA+CGG | - | chr4.2:37371385-37371404 | None:intergenic | 45.0% | |
| GATTCATCAGGAGCAACAGT+AGG | - | chr4.2:37371363-37371382 | None:intergenic | 45.0% | |
| TAATCGAGACCAACCCATCA+CGG | - | chr4.2:37371835-37371854 | None:intergenic | 45.0% | |
| TACAAAAGAGACCCGGATGA+TGG | + | chr4.2:37371582-37371601 | MS.gene50055:CDS | 45.0% | |
| TTCATTCGCCGAAGCTTATC+AGG | - | chr4.2:37372158-37372177 | None:intergenic | 45.0% | |
| ! | AGGTGAGTGAGTTGACAGAA+AGG | + | chr4.2:37371229-37371248 | MS.gene50055:CDS | 45.0% |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | + | chr4.2:37371312-37371331 | MS.gene50055:CDS | 45.0% |
| ! | CTCGATTAGTTCATACCACG+AGG | + | chr4.2:37371847-37371866 | MS.gene50055:CDS | 45.0% |
| ! | GCTTTCCAAGGAGAAAGCAT+GGG | + | chr4.2:37371950-37371969 | MS.gene50055:CDS | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | + | chr4.2:37371323-37371342 | MS.gene50055:CDS | 45.0% |
| !! | GGAAAGGTTTGAGAGCATCT+TGG | - | chr4.2:37372211-37372230 | None:intergenic | 45.0% |
| AAGCCCGTCATAACCAGGAT+GGG | - | chr4.2:37372012-37372031 | None:intergenic | 50.0% | |
| AATCGAGACCAACCCATCAC+GGG | - | chr4.2:37371834-37371853 | None:intergenic | 50.0% | |
| ATTGGTGAACCAGACCTCGA+GGG | - | chr4.2:37371475-37371494 | None:intergenic | 50.0% | |
| CAATGTTAAGGAGACCCTCG+AGG | + | chr4.2:37371458-37371477 | MS.gene50055:CDS | 50.0% | |
| CACTTTGAGCCATCAGGGAA+AGG | - | chr4.2:37372227-37372246 | None:intergenic | 50.0% | |
| CTCGAGGGTCTCCTTAACAT+TGG | - | chr4.2:37371460-37371479 | None:intergenic | 50.0% | |
| CTTTCCCTGATGGCTCAAAG+TGG | + | chr4.2:37372225-37372244 | MS.gene50055:CDS | 50.0% | |
| GCTCTCAAACCTTTCCCTGA+TGG | + | chr4.2:37372215-37372234 | MS.gene50055:CDS | 50.0% | |
| GGCTTTCCAAGGAGAAAGCA+TGG | + | chr4.2:37371949-37371968 | MS.gene50055:CDS | 50.0% | |
| TATTGGTGAACCAGACCTCG+AGG | - | chr4.2:37371476-37371495 | None:intergenic | 50.0% | |
| TCTAGTTGTTGCCTTCGACG+AGG | + | chr4.2:37371521-37371540 | MS.gene50055:CDS | 50.0% | |
| TGAATCCGTGAACCCGAGAT+TGG | + | chr4.2:37371377-37371396 | MS.gene50055:CDS | 50.0% | |
| TGCAGAGCAAGGAAAAGACC+AGG | + | chr4.2:37371260-37371279 | MS.gene50055:CDS | 50.0% | |
| TTCGCCGAAGCTTATCAGGA+TGG | - | chr4.2:37372154-37372173 | None:intergenic | 50.0% | |
| TTGGTCCCATGCTTTCTCCT+TGG | - | chr4.2:37371958-37371977 | None:intergenic | 50.0% | |
| ! | CTCTTTTATCCGTCCCATCC+TGG | + | chr4.2:37371996-37372015 | MS.gene50055:CDS | 50.0% |
| ! | TTTTGGATCGTGTCGCGACA+AGG | + | chr4.2:37371928-37371947 | MS.gene50055:CDS | 50.0% |
| !! | ATGATGAACCCGTGATGGGT+TGG | + | chr4.2:37371823-37371842 | MS.gene50055:CDS | 50.0% |
| AGGCTTCAGCTTGCAGAGCA+AGG | + | chr4.2:37371249-37371268 | MS.gene50055:CDS | 55.0% | |
| CCGTCATAACCAGGATGGGA+CGG | - | chr4.2:37372008-37372027 | None:intergenic | 55.0% | |
| CCGTCCCATCCTGGTTATGA+CGG | + | chr4.2:37372005-37372024 | MS.gene50055:CDS | 55.0% | |
| CGTCCCATCCTGGTTATGAC+GGG | + | chr4.2:37372006-37372025 | MS.gene50055:CDS | 55.0% | |
| CTCGGGTTCACGGATTCATC+AGG | - | chr4.2:37371375-37371394 | None:intergenic | 55.0% | |
| GAAGCCCGTCATAACCAGGA+TGG | - | chr4.2:37372013-37372032 | None:intergenic | 55.0% | |
| GCATGAAGCCCGTCATAACC+AGG | - | chr4.2:37372017-37372036 | None:intergenic | 55.0% | |
| TGTCGCGACAAGGCTTTCCA+AGG | + | chr4.2:37371938-37371957 | MS.gene50055:CDS | 55.0% | |
| TTAAGGAGACCCTCGAGGTC+TGG | + | chr4.2:37371463-37371482 | MS.gene50055:CDS | 55.0% | |
| GAGGGAGAGCAGCTGTCTCT+GGG | + | chr4.2:37371628-37371647 | MS.gene50055:CDS | 60.0% | |
| GGAGGGAGAGCAGCTGTCTC+TGG | + | chr4.2:37371627-37371646 | MS.gene50055:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 37371171 | 37372250 | 37371171 | ID=MS.gene50055 |
| chr4.2 | mRNA | 37371171 | 37372250 | 37371171 | ID=MS.gene50055.t1;Parent=MS.gene50055 |
| chr4.2 | exon | 37371171 | 37372250 | 37371171 | ID=MS.gene50055.t1.exon1;Parent=MS.gene50055.t1 |
| chr4.2 | CDS | 37371171 | 37372250 | 37371171 | ID=cds.MS.gene50055.t1;Parent=MS.gene50055.t1 |
| Gene Sequence |
| Protein sequence |
