Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50126.t1 | XP_024641057.1 | 79.8 | 257 | 47 | 3 | 1 | 254 | 1 | 255 | 6.30E-96 | 360.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50126.t1 | Q8W487 | 45.6 | 195 | 97 | 3 | 63 | 253 | 60 | 249 | 6.9e-35 | 149.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50126.t1 | A0A396I021 | 79.8 | 257 | 47 | 3 | 1 | 254 | 1 | 255 | 4.5e-96 | 360.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene50126 | MS.gene46105 | PPI |
MS.gene50126 | MS.gene46104 | PPI |
MS.gene50126 | MS.gene040272 | PPI |
MS.gene50126 | MS.gene89319 | PPI |
MS.gene50126 | MS.gene055201 | PPI |
MS.gene50126 | MS.gene040271 | PPI |
MS.gene50126 | MS.gene034255 | PPI |
MS.gene50126 | MS.gene67544 | PPI |
MS.gene50126 | MS.gene053230 | PPI |
MS.gene50126 | MS.gene040269 | PPI |
MS.gene000604 | MS.gene50126 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50126.t1 | MTR_5g080880 | 81.250 | 256 | 43 | 3 | 1 | 253 | 1 | 254 | 4.38e-137 | 389 |
MS.gene50126.t1 | MTR_5g080870 | 68.504 | 254 | 46 | 5 | 1 | 254 | 1 | 220 | 1.10e-111 | 325 |
MS.gene50126.t1 | MTR_7g063520 | 42.231 | 251 | 123 | 6 | 8 | 253 | 20 | 253 | 2.44e-57 | 183 |
MS.gene50126.t1 | MTR_4g006560 | 32.075 | 159 | 100 | 3 | 97 | 253 | 83 | 235 | 1.47e-22 | 93.2 |
MS.gene50126.t1 | MTR_1g013120 | 30.041 | 243 | 143 | 9 | 24 | 253 | 4 | 232 | 2.77e-21 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50126.t1 | AT5G05990 | 37.500 | 264 | 142 | 6 | 5 | 253 | 3 | 258 | 6.38e-53 | 172 |
MS.gene50126.t1 | AT3G55605 | 40.959 | 271 | 128 | 9 | 1 | 253 | 1 | 257 | 1.77e-50 | 166 |
MS.gene50126.t1 | AT2G39795 | 42.564 | 195 | 103 | 3 | 63 | 253 | 60 | 249 | 3.14e-48 | 160 |
MS.gene50126.t1 | AT5G02050 | 36.803 | 269 | 151 | 6 | 1 | 253 | 1 | 266 | 1.35e-42 | 146 |
MS.gene50126.t1 | AT2G39790 | 29.741 | 232 | 145 | 4 | 31 | 254 | 19 | 240 | 8.05e-27 | 104 |
MS.gene50126.t1 | AT1G15870 | 29.193 | 161 | 103 | 4 | 96 | 253 | 88 | 240 | 1.81e-20 | 87.4 |
MS.gene50126.t1 | AT1G80720 | 30.120 | 166 | 104 | 5 | 92 | 253 | 31 | 188 | 6.03e-16 | 74.3 |
MS.gene50126.t1 | AT1G80720 | 30.120 | 166 | 104 | 5 | 92 | 253 | 83 | 240 | 1.01e-15 | 74.7 |
MS.gene50126.t1 | AT4G31930 | 29.630 | 162 | 99 | 5 | 97 | 252 | 80 | 232 | 5.24e-13 | 67.0 |
Find 44 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATTATCAACTATCTTAAA+TGG | 0.175868 | 5.4:-63305027 | None:intergenic |
AGTGTTATTGTCTGATTTCC+TGG | 0.252098 | 5.4:-63305048 | None:intergenic |
ATCAGACAATAACACTTAAA+AGG | 0.289378 | 5.4:+63305055 | MS.gene50126:CDS |
TTATCAAGGTGAAGAAATTC+AGG | 0.325526 | 5.4:+63305080 | MS.gene50126:CDS |
CCAAGTCAAGCACTTTCCTT+AGG | 0.334931 | 5.4:+63304540 | MS.gene50126:CDS |
TGCAAGAAATTTACTGTGCT+TGG | 0.359052 | 5.4:-63305776 | None:intergenic |
CAGCGAATAACCATCTCATC+TGG | 0.375769 | 5.4:-63305267 | None:intergenic |
TTAGAAACCTTGACTGAAAG+TGG | 0.404401 | 5.4:-63305204 | None:intergenic |
CTCTTATTTCTAAGTACTTG+TGG | 0.408675 | 5.4:-63305745 | None:intergenic |
TGCAAGAGTACATGATCAAC+AGG | 0.410602 | 5.4:+63305795 | MS.gene50126:CDS |
TTCAGTCAAGGTTTCTAAGA+AGG | 0.418352 | 5.4:+63305209 | MS.gene50126:CDS |
CACAAGTACTTAGAAATAAG+AGG | 0.434165 | 5.4:+63305746 | MS.gene50126:CDS |
GATTATCAACTATCTTAAAT+GGG | 0.456111 | 5.4:-63305026 | None:intergenic |
TAATCATCAAAAGGATGATA+AGG | 0.475586 | 5.4:+63305146 | MS.gene50126:CDS |
GAGAAAAGTCTCATCGGAGT+TGG | 0.476774 | 5.4:-63304699 | None:intergenic |
CAGGAAAAGTAGAGACTACT+TGG | 0.480599 | 5.4:+63305814 | MS.gene50126:CDS |
CAAGTCAAGCACTTTCCTTA+GGG | 0.487750 | 5.4:+63304541 | MS.gene50126:CDS |
ATCGAAAATCACTTGTGCTC+AGG | 0.490320 | 5.4:+63304733 | MS.gene50126:CDS |
GTCAAGGTTTCTAAGAAGGA+TGG | 0.493043 | 5.4:+63305213 | MS.gene50126:CDS |
AGAAAAGTCTCATCGGAGTT+GGG | 0.497268 | 5.4:-63304698 | None:intergenic |
CTCGTAGCGGTTGACGGCAG+CGG | 0.497835 | 5.4:-63304624 | None:intergenic |
TTTAAGATAGTTGATAATCC+AGG | 0.504200 | 5.4:+63305030 | MS.gene50126:CDS |
TGAACCCTCGTAGCGGTTGA+CGG | 0.507166 | 5.4:-63304630 | None:intergenic |
AGAACATGATAATCATCAAA+AGG | 0.514345 | 5.4:+63305137 | MS.gene50126:CDS |
ATCTTAAATGGGAAATTGCT+CGG | 0.515748 | 5.4:-63305015 | None:intergenic |
GAAAGCACGGCGCGATGACC+CGG | 0.519271 | 5.4:-63304602 | None:intergenic |
ACACTTAAAAGGACTTATCA+AGG | 0.527097 | 5.4:+63305066 | MS.gene50126:CDS |
AAGCATTCCACTTTCAGTCA+AGG | 0.530679 | 5.4:+63305197 | MS.gene50126:CDS |
AACACATTTGAATTTCAAAG+AGG | 0.535659 | 5.4:-63305238 | None:intergenic |
GTTTACAGCGCGGAACTCAT+CGG | 0.541419 | 5.4:-63304759 | None:intergenic |
CGCTGCCGTCAACCGCTACG+AGG | 0.550566 | 5.4:+63304625 | MS.gene50126:CDS |
GTTGACGGCAGCGGAAAGCA+CGG | 0.551406 | 5.4:-63304615 | None:intergenic |
TGATTATCATGTTCTTCACC+AGG | 0.551810 | 5.4:-63305129 | None:intergenic |
CCTAAGGAAAGTGCTTGACT+TGG | 0.566876 | 5.4:-63304540 | None:intergenic |
TCAAGGTTTCTAAGAAGGAT+GGG | 0.576019 | 5.4:+63305214 | MS.gene50126:CDS |
AATCTTGCAACAAGCAGCTG+CGG | 0.606350 | 5.4:-63305320 | None:intergenic |
AGCGAATAACCATCTCATCT+GGG | 0.609542 | 5.4:-63305266 | None:intergenic |
TAAACGGAGAAAAGTCTCAT+CGG | 0.611707 | 5.4:-63304705 | None:intergenic |
GCTGCCGTCAACCGCTACGA+GGG | 0.613894 | 5.4:+63304626 | MS.gene50126:CDS |
TGTTGCTTACCCAGATGAGA+TGG | 0.638083 | 5.4:+63305257 | MS.gene50126:CDS |
TCAGAAGAAAAGTGAAACGT+AGG | 0.644962 | 5.4:-63304659 | None:intergenic |
AAAGTAGAGACTACTTGGTG+TGG | 0.647167 | 5.4:+63305819 | MS.gene50126:CDS |
AAGTGCTTGACTTGGAACGA+AGG | 0.662607 | 5.4:-63304532 | None:intergenic |
GAACAAATGAACCCTCGTAG+CGG | 0.717050 | 5.4:-63304637 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATGTTGAAAATTTGATTT+TGG | + | chr5.4:63304971-63304990 | MS.gene50126:intron | 15.0% |
!!! | TGAGATTATGATTTTTAATT+TGG | + | chr5.4:63305104-63305123 | MS.gene50126:CDS | 15.0% |
!! | AATTGAAAGTAATACAAACA+GGG | - | chr5.4:63305644-63305663 | None:intergenic | 20.0% |
!! | ATGGTATGAAAATTTGAATT+TGG | + | chr5.4:63304916-63304935 | MS.gene50126:intron | 20.0% |
!! | GATTATCAACTATCTTAAAT+GGG | - | chr5.4:63305029-63305048 | None:intergenic | 20.0% |
!! | TAATTGAAAGTAATACAAAC+AGG | - | chr5.4:63305645-63305664 | None:intergenic | 20.0% |
!!! | AATTTGATTTTGGTTGATAT+AGG | + | chr5.4:63304981-63305000 | MS.gene50126:intron | 20.0% |
!!! | ATTTGATTTTGGTTGATATA+GGG | + | chr5.4:63304982-63305001 | MS.gene50126:intron | 20.0% |
!!! | TGATTTTCGATTCAATTAAA+CGG | - | chr5.4:63304724-63304743 | None:intergenic | 20.0% |
! | AACACATTTGAATTTCAAAG+AGG | - | chr5.4:63305241-63305260 | None:intergenic | 25.0% |
! | ACATCAGTGATGTTAAATAA+AGG | + | chr5.4:63305416-63305435 | MS.gene50126:intron | 25.0% |
! | AGAACATGATAATCATCAAA+AGG | + | chr5.4:63305137-63305156 | MS.gene50126:CDS | 25.0% |
! | AGAATAAAATAATCAGAACG+AGG | - | chr5.4:63305357-63305376 | None:intergenic | 25.0% |
! | ATCAGACAATAACACTTAAA+AGG | + | chr5.4:63305055-63305074 | MS.gene50126:CDS | 25.0% |
! | ATCATGAGTCTAGTAAATTA+AGG | - | chr5.4:63304793-63304812 | None:intergenic | 25.0% |
! | ATGTTAAATAAAGGCTATAG+CGG | + | chr5.4:63305425-63305444 | MS.gene50126:intron | 25.0% |
! | GGATTATCAACTATCTTAAA+TGG | - | chr5.4:63305030-63305049 | None:intergenic | 25.0% |
! | TAATCATCAAAAGGATGATA+AGG | + | chr5.4:63305146-63305165 | MS.gene50126:CDS | 25.0% |
! | TTTAATCATACCAGCTTATA+AGG | - | chr5.4:63304880-63304899 | None:intergenic | 25.0% |
!! | ATTTTCATACCATTACGAAA+TGG | - | chr5.4:63304909-63304928 | None:intergenic | 25.0% |
!! | TTTTCATACCATTACGAAAT+GGG | - | chr5.4:63304908-63304927 | None:intergenic | 25.0% |
!!! | ATGATTTTTAATTTGGTTCC+TGG | + | chr5.4:63305111-63305130 | MS.gene50126:CDS | 25.0% |
!!! | TTTAAGATAGTTGATAATCC+AGG | + | chr5.4:63305030-63305049 | MS.gene50126:CDS | 25.0% |
AAAAAAGACCCATTTCGTAA+TGG | + | chr5.4:63304897-63304916 | MS.gene50126:intron | 30.0% | |
ACACTTAAAAGGACTTATCA+AGG | + | chr5.4:63305066-63305085 | MS.gene50126:CDS | 30.0% | |
ATCTTAAATGGGAAATTGCT+CGG | - | chr5.4:63305018-63305037 | None:intergenic | 30.0% | |
ATTGATCAGAAAAACTCAAC+CGG | + | chr5.4:63304583-63304602 | MS.gene50126:CDS | 30.0% | |
CACAAGTACTTAGAAATAAG+AGG | + | chr5.4:63305746-63305765 | MS.gene50126:CDS | 30.0% | |
TGAACTTATACCTTATAAGC+TGG | + | chr5.4:63304867-63304886 | MS.gene50126:intron | 30.0% | |
TTATCAAGGTGAAGAAATTC+AGG | + | chr5.4:63305080-63305099 | MS.gene50126:CDS | 30.0% | |
! | GTGCATTCAATATTTGAAAC+CGG | + | chr5.4:63305389-63305408 | MS.gene50126:intron | 30.0% |
! | TGCATTCAATATTTGAAACC+GGG | + | chr5.4:63305390-63305409 | MS.gene50126:intron | 30.0% |
!! | CTCTTATTTCTAAGTACTTG+TGG | - | chr5.4:63305748-63305767 | None:intergenic | 30.0% |
CCAATCTCAATTTCAAATCG+CGG | - | chr5.4:63305524-63305543 | None:intergenic | 35.0% | |
TAAACGGAGAAAAGTCTCAT+CGG | - | chr5.4:63304708-63304727 | None:intergenic | 35.0% | |
TCAGAAGAAAAGTGAAACGT+AGG | - | chr5.4:63304662-63304681 | None:intergenic | 35.0% | |
TCCAAATCCCTGGAAAAAAA+TGG | - | chr5.4:63305704-63305723 | None:intergenic | 35.0% | |
TGATTATCATGTTCTTCACC+AGG | - | chr5.4:63305132-63305151 | None:intergenic | 35.0% | |
TGCAAGAAATTTACTGTGCT+TGG | - | chr5.4:63305779-63305798 | None:intergenic | 35.0% | |
TTAGAAACCTTGACTGAAAG+TGG | - | chr5.4:63305207-63305226 | None:intergenic | 35.0% | |
TTGATCAGAAAAACTCAACC+GGG | + | chr5.4:63304584-63304603 | MS.gene50126:CDS | 35.0% | |
TTGCAGTTCAGAATCAGATT+GGG | + | chr5.4:63305597-63305616 | MS.gene50126:intron | 35.0% | |
! | AGTGTTATTGTCTGATTTCC+TGG | - | chr5.4:63305051-63305070 | None:intergenic | 35.0% |
! | CGCGATTTGAAATTGAGATT+GGG | + | chr5.4:63305522-63305541 | MS.gene50126:intron | 35.0% |
! | GATTTGAAATTGAGATTGGG+TGG | + | chr5.4:63305525-63305544 | MS.gene50126:intron | 35.0% |
! | GCATTCAATATTTGAAACCG+GGG | + | chr5.4:63305391-63305410 | MS.gene50126:intron | 35.0% |
! | TCAAGGTTTCTAAGAAGGAT+GGG | + | chr5.4:63305214-63305233 | MS.gene50126:CDS | 35.0% |
! | TCAGAATCAGATTGGGATTT+TGG | + | chr5.4:63305604-63305623 | MS.gene50126:intron | 35.0% |
! | TTCAGTCAAGGTTTCTAAGA+AGG | + | chr5.4:63305209-63305228 | MS.gene50126:CDS | 35.0% |
!! | TTTTGGTTGATATAGGGTGA+GGG | + | chr5.4:63304988-63305007 | MS.gene50126:intron | 35.0% |
!!! | AGATTCTGCCATTTTTTTCC+AGG | + | chr5.4:63305693-63305712 | MS.gene50126:intron | 35.0% |
!!! | ATTTTGGTTGATATAGGGTG+AGG | + | chr5.4:63304987-63305006 | MS.gene50126:intron | 35.0% |
!!! | GATTCTGCCATTTTTTTCCA+GGG | + | chr5.4:63305694-63305713 | MS.gene50126:intron | 35.0% |
AAGCATTCCACTTTCAGTCA+AGG | + | chr5.4:63305197-63305216 | MS.gene50126:CDS | 40.0% | |
AGAAAAGTCTCATCGGAGTT+GGG | - | chr5.4:63304701-63304720 | None:intergenic | 40.0% | |
AGCGAATAACCATCTCATCT+GGG | - | chr5.4:63305269-63305288 | None:intergenic | 40.0% | |
ATCGAAAATCACTTGTGCTC+AGG | + | chr5.4:63304733-63304752 | MS.gene50126:CDS | 40.0% | |
CAAGTCAAGCACTTTCCTTA+GGG | + | chr5.4:63304541-63304560 | MS.gene50126:CDS | 40.0% | |
CAGGAAAAGTAGAGACTACT+TGG | + | chr5.4:63305814-63305833 | MS.gene50126:CDS | 40.0% | |
CCACTATAGCTGCTATGATA+TGG | - | chr5.4:63305453-63305472 | None:intergenic | 40.0% | |
CCATATCATAGCAGCTATAG+TGG | + | chr5.4:63305450-63305469 | MS.gene50126:intron | 40.0% | |
GTTGCAGTTCAGAATCAGAT+TGG | + | chr5.4:63305596-63305615 | MS.gene50126:intron | 40.0% | |
TAACATCACTGATGTAACCC+CGG | - | chr5.4:63305411-63305430 | None:intergenic | 40.0% | |
! | AAAGTAGAGACTACTTGGTG+TGG | + | chr5.4:63305819-63305838 | MS.gene50126:CDS | 40.0% |
! | CCGCGATTTGAAATTGAGAT+TGG | + | chr5.4:63305521-63305540 | MS.gene50126:intron | 40.0% |
! | GTCAAGGTTTCTAAGAAGGA+TGG | + | chr5.4:63305213-63305232 | MS.gene50126:CDS | 40.0% |
! | TGCAAGAGTACATGATCAAC+AGG | + | chr5.4:63305795-63305814 | MS.gene50126:CDS | 40.0% |
! | TTTTTCCAGGGATTTGGATG+AGG | + | chr5.4:63305706-63305725 | MS.gene50126:intron | 40.0% |
!!! | GCCATTTTTTTCCAGGGATT+TGG | + | chr5.4:63305700-63305719 | MS.gene50126:intron | 40.0% |
AATCTTGCAACAAGCAGCTG+CGG | - | chr5.4:63305323-63305342 | None:intergenic | 45.0% | |
CAGCGAATAACCATCTCATC+TGG | - | chr5.4:63305270-63305289 | None:intergenic | 45.0% | |
CCAAGTCAAGCACTTTCCTT+AGG | + | chr5.4:63304540-63304559 | MS.gene50126:CDS | 45.0% | |
GAACAAATGAACCCTCGTAG+CGG | - | chr5.4:63304640-63304659 | None:intergenic | 45.0% | |
GAGAAAAGTCTCATCGGAGT+TGG | - | chr5.4:63304702-63304721 | None:intergenic | 45.0% | |
GCTATAGCACCTTTGCATAG+CGG | + | chr5.4:63305476-63305495 | MS.gene50126:intron | 45.0% | |
GTTCAAACTCCGCTATGCAA+AGG | - | chr5.4:63305488-63305507 | None:intergenic | 45.0% | |
TCGCAGAAGAAAAAGCCCTA+AGG | - | chr5.4:63304559-63304578 | None:intergenic | 45.0% | |
TCTCTACAACCAAGCAGTAC+AGG | - | chr5.4:63305560-63305579 | None:intergenic | 45.0% | |
TGTTGCTAACCTGTACTGCT+TGG | + | chr5.4:63305548-63305567 | MS.gene50126:intron | 45.0% | |
! | TGTTGCTTACCCAGATGAGA+TGG | + | chr5.4:63305257-63305276 | MS.gene50126:CDS | 45.0% |
!! | AAGTGCTTGACTTGGAACGA+AGG | - | chr5.4:63304535-63304554 | None:intergenic | 45.0% |
!! | CCTAAGGAAAGTGCTTGACT+TGG | - | chr5.4:63304543-63304562 | None:intergenic | 45.0% |
GGAAGACGAAGTTTACAGCG+CGG | - | chr5.4:63304772-63304791 | None:intergenic | 50.0% | |
GTTTACAGCGCGGAACTCAT+CGG | - | chr5.4:63304762-63304781 | None:intergenic | 50.0% | |
CAACGCCTCATCCAAATCCC+TGG | - | chr5.4:63305714-63305733 | None:intergenic | 55.0% | |
TGAACCCTCGTAGCGGTTGA+CGG | - | chr5.4:63304633-63304652 | None:intergenic | 55.0% | |
GTTGACGGCAGCGGAAAGCA+CGG | - | chr5.4:63304618-63304637 | None:intergenic | 60.0% | |
CTCGTAGCGGTTGACGGCAG+CGG | - | chr5.4:63304627-63304646 | None:intergenic | 65.0% | |
GCTGCCGTCAACCGCTACGA+GGG | + | chr5.4:63304626-63304645 | MS.gene50126:CDS | 65.0% | |
! | GAAAGCACGGCGCGATGACC+CGG | - | chr5.4:63304605-63304624 | None:intergenic | 65.0% |
CGCTGCCGTCAACCGCTACG+AGG | + | chr5.4:63304625-63304644 | MS.gene50126:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 63304515 | 63305874 | 63304515 | ID=MS.gene50126 |
chr5.4 | mRNA | 63304515 | 63305874 | 63304515 | ID=MS.gene50126.t1;Parent=MS.gene50126 |
chr5.4 | exon | 63304515 | 63304775 | 63304515 | ID=MS.gene50126.t1.exon1;Parent=MS.gene50126.t1 |
chr5.4 | CDS | 63304515 | 63304775 | 63304515 | ID=cds.MS.gene50126.t1;Parent=MS.gene50126.t1 |
chr5.4 | exon | 63305003 | 63305346 | 63305003 | ID=MS.gene50126.t1.exon2;Parent=MS.gene50126.t1 |
chr5.4 | CDS | 63305003 | 63305346 | 63305003 | ID=cds.MS.gene50126.t1;Parent=MS.gene50126.t1 |
chr5.4 | exon | 63305715 | 63305874 | 63305715 | ID=MS.gene50126.t1.exon3;Parent=MS.gene50126.t1 |
chr5.4 | CDS | 63305715 | 63305874 | 63305715 | ID=cds.MS.gene50126.t1;Parent=MS.gene50126.t1 |
Gene Sequence |
Protein sequence |