Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50270.t1 | XP_003605125.2 | 94.4 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 4.30E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50270.t1 | G7JEM0 | 94.4 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 3.1e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene50270 | -0.803668 | 3.12E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene50270 | -0.804292 | 2.32E-49 | -1.69E-46 |
| MS.gene050647 | MS.gene50270 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene50270 | -0.800728 | 1.26E-48 | -1.69E-46 |
| MS.gene052805 | MS.gene50270 | 0.819261 | 1.27E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene50270 | 0.813466 | 2.52E-51 | -1.69E-46 |
| MS.gene054290 | MS.gene50270 | 0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene50270 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene50270 | -0.801714 | 7.90E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene50270 | -0.813392 | 2.62E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene50270 | -0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene50270 | 0.8077 | 4.45E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene50270 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene50270 | -0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene50270 | -0.809354 | 1.97E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50270.t1 | MTR_4g024370 | 94.397 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 8.61e-160 | 441 |
| MS.gene50270.t1 | MTR_4g024370 | 94.397 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 8.61e-160 | 441 |
| MS.gene50270.t1 | MTR_4g102220 | 55.895 | 229 | 89 | 7 | 1 | 222 | 1 | 224 | 6.26e-76 | 228 |
| MS.gene50270.t1 | MTR_5g011800 | 52.814 | 231 | 99 | 5 | 1 | 223 | 1 | 229 | 7.70e-76 | 228 |
| MS.gene50270.t1 | MTR_5g011820 | 51.724 | 232 | 100 | 6 | 1 | 223 | 4 | 232 | 4.88e-71 | 216 |
| MS.gene50270.t1 | MTR_6g060390 | 30.493 | 223 | 136 | 7 | 5 | 222 | 4 | 212 | 9.67e-25 | 97.4 |
| MS.gene50270.t1 | MTR_7g117380 | 30.973 | 226 | 141 | 7 | 5 | 222 | 3 | 221 | 1.03e-24 | 97.8 |
| MS.gene50270.t1 | MTR_1g076800 | 31.739 | 230 | 123 | 10 | 5 | 222 | 4 | 211 | 4.84e-24 | 95.9 |
| MS.gene50270.t1 | MTR_6g060440 | 30.045 | 223 | 135 | 8 | 5 | 222 | 4 | 210 | 2.11e-23 | 94.0 |
| MS.gene50270.t1 | MTR_4g023950 | 29.730 | 222 | 134 | 9 | 5 | 222 | 4 | 207 | 2.74e-21 | 88.2 |
| MS.gene50270.t1 | MTR_7g117380 | 30.055 | 183 | 118 | 6 | 43 | 222 | 4 | 179 | 1.31e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50270.t1 | AT2G45360 | 56.757 | 222 | 88 | 3 | 1 | 222 | 1 | 214 | 7.59e-81 | 241 |
| MS.gene50270.t1 | AT3G60780 | 54.260 | 223 | 95 | 3 | 1 | 222 | 1 | 217 | 1.13e-77 | 233 |
| MS.gene50270.t1 | AT1G62840 | 46.725 | 229 | 111 | 5 | 1 | 223 | 1 | 224 | 1.50e-59 | 187 |
| MS.gene50270.t1 | AT1G12320 | 46.667 | 225 | 101 | 6 | 1 | 221 | 1 | 210 | 1.10e-49 | 161 |
| MS.gene50270.t1 | AT5G62280 | 27.586 | 232 | 143 | 8 | 5 | 222 | 4 | 224 | 9.17e-15 | 71.2 |
Find 63 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGTTTCTTGGTTTAAA+TGG | 0.134381 | 4.4:+77174742 | MS.gene50270:CDS |
| ATAACATTCTACGATGAATT+TGG | 0.250717 | 4.4:-77174412 | None:intergenic |
| TATACATCATGAAGCTTGTT+TGG | 0.316497 | 4.4:+77173658 | None:intergenic |
| GGCAAAGGTCAAATGTTTCT+TGG | 0.321382 | 4.4:+77174733 | MS.gene50270:CDS |
| TGCAATCTTGACCCTTCATC+TGG | 0.322628 | 4.4:-77174516 | None:intergenic |
| AGGCCAACACTTGCGGCTAT+TGG | 0.324490 | 4.4:-77174447 | None:intergenic |
| TTTGCCTGTTGGAAAGGGTT+TGG | 0.337937 | 4.4:+77174809 | MS.gene50270:CDS |
| TTGTGGTGGATTGTAGGCTT+AGG | 0.346252 | 4.4:+77174640 | MS.gene50270:CDS |
| GAGTACTAGAGGGGCAGTTT+TGG | 0.356533 | 4.4:+77174695 | MS.gene50270:CDS |
| TGTGGTGGATTGTAGGCTTA+GGG | 0.385593 | 4.4:+77174641 | MS.gene50270:CDS |
| TGTGAGAAATTCAAGGAATC+TGG | 0.400122 | 4.4:+77174348 | MS.gene50270:CDS |
| GGGATACACCCATCTCGGCT+AGG | 0.414592 | 4.4:-77174551 | None:intergenic |
| ACGGTGATCAAAAGTCTTGA+TGG | 0.439976 | 4.4:+77174606 | MS.gene50270:CDS |
| ATTGCAGTGTGAGAAATTCA+AGG | 0.454346 | 4.4:+77174341 | MS.gene50270:intron |
| AGTTCTCGGTGAAGCGCAAA+CGG | 0.470434 | 4.4:+77174587 | MS.gene50270:CDS |
| GATGAATTTGGTGTTCCATC+CGG | 0.471577 | 4.4:-77174400 | None:intergenic |
| GGATACACCCATCTCGGCTA+GGG | 0.478620 | 4.4:-77174550 | None:intergenic |
| CACAAAAGCCCTAGCCGAGA+TGG | 0.481827 | 4.4:+77174542 | MS.gene50270:CDS |
| ATATCCAAACCCTTTCCAAC+AGG | 0.485251 | 4.4:-77174813 | None:intergenic |
| AGCTTCAAGTAGTGCTTCAA+AGG | 0.491703 | 4.4:+77174869 | MS.gene50270:CDS |
| GATCAAAAGTCTTGATGGGT+TGG | 0.514141 | 4.4:+77174611 | MS.gene50270:CDS |
| CCGAGAACTATCTCCGGTGG+GGG | 0.517771 | 4.4:-77174573 | None:intergenic |
| GCGGTTGCTGCTCGCAACAC+CGG | 0.525122 | 4.4:+77174471 | MS.gene50270:CDS |
| AGGCACACGTGTGGTTAGAT+CGG | 0.531174 | 4.4:+77174782 | MS.gene50270:CDS |
| TGGAACATGGTTCTTGAAAG+AGG | 0.534421 | 4.4:+77174762 | MS.gene50270:CDS |
| TGTTGCGAGCAGCAACCGCT+AGG | 0.535059 | 4.4:-77174467 | None:intergenic |
| CACCGAGAACTATCTCCGGT+GGG | 0.537897 | 4.4:-77174575 | None:intergenic |
| GATCTATGAGTTTGATCCAA+CGG | 0.544545 | 4.4:-77174902 | None:intergenic |
| GGTTTGGATATTGCTTACAT+AGG | 0.545757 | 4.4:+77174825 | MS.gene50270:CDS |
| ACAAAAGCCCTAGCCGAGAT+GGG | 0.552505 | 4.4:+77174543 | MS.gene50270:CDS |
| GGTGTTCCATCCGGCTGCCA+TGG | 0.552686 | 4.4:-77174391 | None:intergenic |
| CGGTGATCAAAAGTCTTGAT+GGG | 0.555108 | 4.4:+77174607 | MS.gene50270:CDS |
| CTTCTATCATCCATGGCAGC+CGG | 0.557426 | 4.4:+77174381 | MS.gene50270:CDS |
| CAAAGGGCACTCCTAGCCGT+TGG | 0.560727 | 4.4:+77174886 | MS.gene50270:CDS |
| GCTTACATAGGAAGTAGAAT+CGG | 0.562095 | 4.4:+77174837 | MS.gene50270:CDS |
| GCAATCTTGACCCTTCATCT+GGG | 0.562428 | 4.4:-77174515 | None:intergenic |
| ATCGTAGAATGTTATTCCCA+CGG | 0.567348 | 4.4:+77174420 | MS.gene50270:CDS |
| TATGCACACGTGTCTTGCAC+CGG | 0.569145 | 4.4:-77174490 | None:intergenic |
| GTGTGCATAGTCCCAGATGA+AGG | 0.570105 | 4.4:+77174504 | MS.gene50270:CDS |
| CGAGAACTATCTCCGGTGGG+GGG | 0.571171 | 4.4:-77174572 | None:intergenic |
| TCACCGAGAACTATCTCCGG+TGG | 0.572168 | 4.4:-77174576 | None:intergenic |
| AACCGCTAGGCCAACACTTG+CGG | 0.573043 | 4.4:-77174454 | None:intergenic |
| TAGGGTTCTTAAGGTTGCAA+AGG | 0.574007 | 4.4:+77174671 | MS.gene50270:CDS |
| GGTCCAATAGCCGCAAGTGT+TGG | 0.576902 | 4.4:+77174444 | MS.gene50270:CDS |
| AGCTGAGCTTCTATCATCCA+TGG | 0.578564 | 4.4:+77174374 | MS.gene50270:CDS |
| TATCATCCATGGCAGCCGGA+TGG | 0.579782 | 4.4:+77174385 | MS.gene50270:CDS |
| TGCGGCTATTGGACCGCCGT+GGG | 0.584383 | 4.4:-77174436 | None:intergenic |
| GCTTCAAGTAGTGCTTCAAA+GGG | 0.584802 | 4.4:+77174870 | MS.gene50270:CDS |
| ACCGAGAACTATCTCCGGTG+GGG | 0.589901 | 4.4:-77174574 | None:intergenic |
| TTCTTGGTTTAAATGGAACA+TGG | 0.590885 | 4.4:+77174749 | MS.gene50270:CDS |
| GTTGCAAAGGTGAGTACTAG+AGG | 0.597632 | 4.4:+77174684 | MS.gene50270:CDS |
| TTGCAAAGGTGAGTACTAGA+GGG | 0.599847 | 4.4:+77174685 | MS.gene50270:CDS |
| GAGAACTATCTCCGGTGGGG+GGG | 0.611049 | 4.4:-77174571 | None:intergenic |
| TTGCGGCTATTGGACCGCCG+TGG | 0.612852 | 4.4:-77174437 | None:intergenic |
| TGTGCATAGTCCCAGATGAA+GGG | 0.619561 | 4.4:+77174505 | MS.gene50270:CDS |
| ATGAGTTTGATCCAACGGCT+AGG | 0.623677 | 4.4:-77174897 | None:intergenic |
| AGCCGCAAGTGTTGGCCTAG+CGG | 0.628784 | 4.4:+77174452 | MS.gene50270:CDS |
| GCTTCACCGAGAACTATCTC+CGG | 0.641092 | 4.4:-77174579 | None:intergenic |
| TACATAGGAAGTAGAATCGG+TGG | 0.650114 | 4.4:+77174840 | MS.gene50270:CDS |
| ATAGGAAGTAGAATCGGTGG+TGG | 0.655026 | 4.4:+77174843 | MS.gene50270:CDS |
| TGCAAAGGTGAGTACTAGAG+GGG | 0.660954 | 4.4:+77174686 | MS.gene50270:CDS |
| TCTTGAAAGAGGCACACGTG+TGG | 0.689378 | 4.4:+77174773 | MS.gene50270:CDS |
| GTAGAATGTTATTCCCACGG+CGG | 0.814857 | 4.4:+77174423 | MS.gene50270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATGGTATTAATTATTT+GGG | + | chr4.4:77174311-77174330 | MS.gene50270:intron | 10.0% |
| !! | TTAATATGGTATTAATTATT+TGG | + | chr4.4:77174310-77174329 | MS.gene50270:intron | 10.0% |
| !! | AAAGAAAAAATATTACAAAG+AGG | - | chr4.4:77173866-77173885 | None:intergenic | 15.0% |
| !! | AAGAAAAAATATTACAAAGA+GGG | - | chr4.4:77173865-77173884 | None:intergenic | 15.0% |
| !! | AGAAAAAAAATTATACAAAG+AGG | - | chr4.4:77174140-77174159 | None:intergenic | 15.0% |
| !! | GAAAAAAAATTATACAAAGA+GGG | - | chr4.4:77174139-77174158 | None:intergenic | 15.0% |
| !! | TAGTGATTATAATTTATTCT+TGG | - | chr4.4:77174248-77174267 | None:intergenic | 15.0% |
| !!! | AAATTGATGATGTTTTAATA+TGG | + | chr4.4:77174296-77174315 | MS.gene50270:intron | 15.0% |
| !! | AACTAAAATGGAAAAAAGAA+AGG | - | chr4.4:77173841-77173860 | None:intergenic | 20.0% |
| !! | ACTAAAATGGAAAAAAGAAA+GGG | - | chr4.4:77173840-77173859 | None:intergenic | 20.0% |
| !!! | TTTTAAGACAAATAACAACA+AGG | - | chr4.4:77174276-77174295 | None:intergenic | 20.0% |
| ! | AAACTCATAGATCAAAAATC+AGG | + | chr4.4:77174912-77174931 | MS.gene50270:CDS | 25.0% |
| ! | ATAACATTCTACGATGAATT+TGG | - | chr4.4:77174415-77174434 | None:intergenic | 25.0% |
| ! | ATTCTTGATACCATATTATG+TGG | - | chr4.4:77174202-77174221 | None:intergenic | 25.0% |
| ! | CAAATGTTTCTTGGTTTAAA+TGG | + | chr4.4:77174742-77174761 | MS.gene50270:CDS | 25.0% |
| ACGTAAACTTATGTGATTGA+AGG | - | chr4.4:77174019-77174038 | None:intergenic | 30.0% | |
| CGTAAACTTATGTGATTGAA+GGG | - | chr4.4:77174018-77174037 | None:intergenic | 30.0% | |
| GTAAACTTATGTGATTGAAG+GGG | - | chr4.4:77174017-77174036 | None:intergenic | 30.0% | |
| TACAAAGAGGGAAACTAAAA+TGG | - | chr4.4:77173853-77173872 | None:intergenic | 30.0% | |
| TACAAAGAGGGAAATGAAAA+TGG | - | chr4.4:77174127-77174146 | None:intergenic | 30.0% | |
| TTCTTGGTTTAAATGGAACA+TGG | + | chr4.4:77174749-77174768 | MS.gene50270:CDS | 30.0% | |
| ! | AGTGTCTATGTAAGCTTTTA+AGG | - | chr4.4:77173697-77173716 | None:intergenic | 30.0% |
| ! | TTTTGGCATGTAAAAATGCA+TGG | + | chr4.4:77174712-77174731 | MS.gene50270:CDS | 30.0% |
| !! | ATTGATCTTACTTGTTGTTG+AGG | - | chr4.4:77173744-77173763 | None:intergenic | 30.0% |
| ATCGTAGAATGTTATTCCCA+CGG | + | chr4.4:77174420-77174439 | MS.gene50270:CDS | 35.0% | |
| ATTGCAGTGTGAGAAATTCA+AGG | + | chr4.4:77174341-77174360 | MS.gene50270:intron | 35.0% | |
| CATATTATGTGGTGTGATTG+CGG | - | chr4.4:77174191-77174210 | None:intergenic | 35.0% | |
| CATGTAAAAATGCATGGCAA+AGG | + | chr4.4:77174718-77174737 | MS.gene50270:CDS | 35.0% | |
| GATCTATGAGTTTGATCCAA+CGG | - | chr4.4:77174905-77174924 | None:intergenic | 35.0% | |
| GCTTACATAGGAAGTAGAAT+CGG | + | chr4.4:77174837-77174856 | MS.gene50270:CDS | 35.0% | |
| GGGAAATGAAAATGGAAAAG+TGG | - | chr4.4:77174119-77174138 | None:intergenic | 35.0% | |
| GGTTTGGATATTGCTTACAT+AGG | + | chr4.4:77174825-77174844 | MS.gene50270:CDS | 35.0% | |
| TGTGAGAAATTCAAGGAATC+TGG | + | chr4.4:77174348-77174367 | MS.gene50270:CDS | 35.0% | |
| !! | TACTTGTTGTTGAGGTTGAA+AGG | - | chr4.4:77173736-77173755 | None:intergenic | 35.0% |
| !!! | ATTTTCTTGTGGTGGATTGT+AGG | + | chr4.4:77174634-77174653 | MS.gene50270:CDS | 35.0% |
| !!! | GTTTTTTTGCCTGTTGGAAA+GGG | + | chr4.4:77174804-77174823 | MS.gene50270:CDS | 35.0% |
| !!! | TAAGCTTTTAAGGCAGTTTC+TGG | - | chr4.4:77173687-77173706 | None:intergenic | 35.0% |
| ACGGTGATCAAAAGTCTTGA+TGG | + | chr4.4:77174606-77174625 | MS.gene50270:CDS | 40.0% | |
| AGCTTCAAGTAGTGCTTCAA+AGG | + | chr4.4:77174869-77174888 | MS.gene50270:CDS | 40.0% | |
| ATATCCAAACCCTTTCCAAC+AGG | - | chr4.4:77174816-77174835 | None:intergenic | 40.0% | |
| CGCAATCACACCACATAATA+TGG | + | chr4.4:77174189-77174208 | MS.gene50270:intron | 40.0% | |
| CGGTGATCAAAAGTCTTGAT+GGG | + | chr4.4:77174607-77174626 | MS.gene50270:CDS | 40.0% | |
| GCTTCAAGTAGTGCTTCAAA+GGG | + | chr4.4:77174870-77174889 | MS.gene50270:CDS | 40.0% | |
| GGCAAAGGTCAAATGTTTCT+TGG | + | chr4.4:77174733-77174752 | MS.gene50270:CDS | 40.0% | |
| TACATAGGAAGTAGAATCGG+TGG | + | chr4.4:77174840-77174859 | MS.gene50270:CDS | 40.0% | |
| TAGGGTTCTTAAGGTTGCAA+AGG | + | chr4.4:77174671-77174690 | MS.gene50270:CDS | 40.0% | |
| TGGAACATGGTTCTTGAAAG+AGG | + | chr4.4:77174762-77174781 | MS.gene50270:CDS | 40.0% | |
| TTGCAAAGGTGAGTACTAGA+GGG | + | chr4.4:77174685-77174704 | MS.gene50270:CDS | 40.0% | |
| ! | GATCAAAAGTCTTGATGGGT+TGG | + | chr4.4:77174611-77174630 | MS.gene50270:CDS | 40.0% |
| ! | GGATTTTGCTAGGGTTCTTA+AGG | + | chr4.4:77174662-77174681 | MS.gene50270:CDS | 40.0% |
| ! | TAGGCTTAGGGATTTTGCTA+GGG | + | chr4.4:77174653-77174672 | MS.gene50270:CDS | 40.0% |
| !! | GATGAATTTGGTGTTCCATC+CGG | - | chr4.4:77174403-77174422 | None:intergenic | 40.0% |
| !! | TTGAGGTTGAAAGGTGCTTA+CGG | - | chr4.4:77173727-77173746 | None:intergenic | 40.0% |
| !!! | AGATCGGTTTTTTTGCCTGT+TGG | + | chr4.4:77174798-77174817 | MS.gene50270:CDS | 40.0% |
| !!! | GGTTTTTTTGCCTGTTGGAA+AGG | + | chr4.4:77174803-77174822 | MS.gene50270:CDS | 40.0% |
| !!! | TGATGGGTTGGATTTTCTTG+TGG | + | chr4.4:77174623-77174642 | MS.gene50270:CDS | 40.0% |
| AGCTGAGCTTCTATCATCCA+TGG | + | chr4.4:77174374-77174393 | MS.gene50270:CDS | 45.0% | |
| ATAGGAAGTAGAATCGGTGG+TGG | + | chr4.4:77174843-77174862 | MS.gene50270:CDS | 45.0% | |
| ATGAGTTTGATCCAACGGCT+AGG | - | chr4.4:77174900-77174919 | None:intergenic | 45.0% | |
| GCAATCTTGACCCTTCATCT+GGG | - | chr4.4:77174518-77174537 | None:intergenic | 45.0% | |
| GTAGAATGTTATTCCCACGG+CGG | + | chr4.4:77174423-77174442 | MS.gene50270:CDS | 45.0% | |
| GTTGCAAAGGTGAGTACTAG+AGG | + | chr4.4:77174684-77174703 | MS.gene50270:CDS | 45.0% | |
| TGCAAAGGTGAGTACTAGAG+GGG | + | chr4.4:77174686-77174705 | MS.gene50270:CDS | 45.0% | |
| TGCAATCTTGACCCTTCATC+TGG | - | chr4.4:77174519-77174538 | None:intergenic | 45.0% | |
| TGTGCATAGTCCCAGATGAA+GGG | + | chr4.4:77174505-77174524 | MS.gene50270:CDS | 45.0% | |
| TTTGCCTGTTGGAAAGGGTT+TGG | + | chr4.4:77174809-77174828 | MS.gene50270:CDS | 45.0% | |
| ! | GTAGGCTTAGGGATTTTGCT+AGG | + | chr4.4:77174652-77174671 | MS.gene50270:CDS | 45.0% |
| !! | TGGGTTGGATTTTCTTGTGG+TGG | + | chr4.4:77174626-77174645 | MS.gene50270:CDS | 45.0% |
| !! | TGTGGTGGATTGTAGGCTTA+GGG | + | chr4.4:77174641-77174660 | MS.gene50270:CDS | 45.0% |
| !! | TTGTGGTGGATTGTAGGCTT+AGG | + | chr4.4:77174640-77174659 | MS.gene50270:CDS | 45.0% |
| !! | ATAATATATATTTGAAAAAT+TGG | - | chr4.4:77173895-77173914 | None:intergenic | 5.0% |
| ACAAAAGCCCTAGCCGAGAT+GGG | + | chr4.4:77174543-77174562 | MS.gene50270:CDS | 50.0% | |
| AGGCACACGTGTGGTTAGAT+CGG | + | chr4.4:77174782-77174801 | MS.gene50270:CDS | 50.0% | |
| AGTTCTCGGTGAAGCGCAAA+CGG | + | chr4.4:77174587-77174606 | MS.gene50270:CDS | 50.0% | |
| CTTCTATCATCCATGGCAGC+CGG | + | chr4.4:77174381-77174400 | MS.gene50270:CDS | 50.0% | |
| GCTTCACCGAGAACTATCTC+CGG | - | chr4.4:77174582-77174601 | None:intergenic | 50.0% | |
| GTGTGCATAGTCCCAGATGA+AGG | + | chr4.4:77174504-77174523 | MS.gene50270:CDS | 50.0% | |
| TATGCACACGTGTCTTGCAC+CGG | - | chr4.4:77174493-77174512 | None:intergenic | 50.0% | |
| ! | GAGTACTAGAGGGGCAGTTT+TGG | + | chr4.4:77174695-77174714 | MS.gene50270:CDS | 50.0% |
| ! | TCTTGAAAGAGGCACACGTG+TGG | + | chr4.4:77174773-77174792 | MS.gene50270:CDS | 50.0% |
| AACCGCTAGGCCAACACTTG+CGG | - | chr4.4:77174457-77174476 | None:intergenic | 55.0% | |
| ACCGAGAACTATCTCCGGTG+GGG | - | chr4.4:77174577-77174596 | None:intergenic | 55.0% | |
| AGGCCAACACTTGCGGCTAT+TGG | - | chr4.4:77174450-77174469 | None:intergenic | 55.0% | |
| CACAAAAGCCCTAGCCGAGA+TGG | + | chr4.4:77174542-77174561 | MS.gene50270:CDS | 55.0% | |
| CACCGAGAACTATCTCCGGT+GGG | - | chr4.4:77174578-77174597 | None:intergenic | 55.0% | |
| GGATACACCCATCTCGGCTA+GGG | - | chr4.4:77174553-77174572 | None:intergenic | 55.0% | |
| GGTCCAATAGCCGCAAGTGT+TGG | + | chr4.4:77174444-77174463 | MS.gene50270:CDS | 55.0% | |
| TATCATCCATGGCAGCCGGA+TGG | + | chr4.4:77174385-77174404 | MS.gene50270:CDS | 55.0% | |
| TCACCGAGAACTATCTCCGG+TGG | - | chr4.4:77174579-77174598 | None:intergenic | 55.0% | |
| CCCCCACCGGAGATAGTTCT+CGG | + | chr4.4:77174573-77174592 | MS.gene50270:CDS | 60.0% | |
| CCGAGAACTATCTCCGGTGG+GGG | - | chr4.4:77174576-77174595 | None:intergenic | 60.0% | |
| CGAGAACTATCTCCGGTGGG+GGG | - | chr4.4:77174575-77174594 | None:intergenic | 60.0% | |
| GAGAACTATCTCCGGTGGGG+GGG | - | chr4.4:77174574-77174593 | None:intergenic | 60.0% | |
| GGGATACACCCATCTCGGCT+AGG | - | chr4.4:77174554-77174573 | None:intergenic | 60.0% | |
| TGGGGGGGATACACCCATCT+CGG | - | chr4.4:77174559-77174578 | None:intergenic | 60.0% | |
| TGTTGCGAGCAGCAACCGCT+AGG | - | chr4.4:77174470-77174489 | None:intergenic | 60.0% | |
| !! | AGCCGCAAGTGTTGGCCTAG+CGG | + | chr4.4:77174452-77174471 | MS.gene50270:CDS | 60.0% |
| !! | CAAAGGGCACTCCTAGCCGT+TGG | + | chr4.4:77174886-77174905 | MS.gene50270:CDS | 60.0% |
| GATGGGTGTATCCCCCCCAC+CGG | + | chr4.4:77174560-77174579 | MS.gene50270:CDS | 65.0% | |
| GCGGTTGCTGCTCGCAACAC+CGG | + | chr4.4:77174471-77174490 | MS.gene50270:CDS | 65.0% | |
| GGTGTTCCATCCGGCTGCCA+TGG | - | chr4.4:77174394-77174413 | None:intergenic | 65.0% | |
| TGCGGCTATTGGACCGCCGT+GGG | - | chr4.4:77174439-77174458 | None:intergenic | 65.0% | |
| TTGCGGCTATTGGACCGCCG+TGG | - | chr4.4:77174440-77174459 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 77173666 | 77174959 | 77173666 | ID=MS.gene50270 |
| chr4.4 | mRNA | 77173666 | 77174959 | 77173666 | ID=MS.gene50270.t1;Parent=MS.gene50270 |
| chr4.4 | exon | 77173666 | 77173725 | 77173666 | ID=MS.gene50270.t1.exon1;Parent=MS.gene50270.t1 |
| chr4.4 | CDS | 77173666 | 77173725 | 77173666 | ID=cds.MS.gene50270.t1;Parent=MS.gene50270.t1 |
| chr4.4 | exon | 77174348 | 77174959 | 77174348 | ID=MS.gene50270.t1.exon2;Parent=MS.gene50270.t1 |
| chr4.4 | CDS | 77174348 | 77174959 | 77174348 | ID=cds.MS.gene50270.t1;Parent=MS.gene50270.t1 |
| Gene Sequence |
| Protein sequence |
