AlfalfaGEDB | MS.gene050647

M. sativa cultivar XinJiangDaYe / MS.gene050647

KEGG: -
GO: -
PFAM: PF13639.9 PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050647.t1	XP_003626572.1	59.2	370	27	4	1	246	1	370	2.40E-108	401.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050647.t1	P0CH01	29.2	373	124	8	1	238	1	368	8.7e-35	148.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050647.t1	G7L440	59.2	370	27	4	1	246	1	370	1.7e-108	401.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene050647	-0.834991	2.18E-56	-1.69E-46
MS.gene049217	MS.gene050647	-0.825425	4.72E-54	-1.69E-46
MS.gene049222	MS.gene050647	-0.826052	3.35E-54	-1.69E-46
MS.gene049232	MS.gene050647	-0.817016	4.10E-52	-1.69E-46
MS.gene049285	MS.gene050647	-0.809292	2.03E-50	-1.69E-46
MS.gene049320	MS.gene050647	-0.817961	2.51E-52	-1.69E-46
MS.gene049609	MS.gene050647	-0.818777	1.64E-52	-1.69E-46
MS.gene049633	MS.gene050647	-0.811195	7.91E-51	-1.69E-46
MS.gene049805	MS.gene050647	-0.804334	2.27E-49	-1.69E-46
MS.gene05010	MS.gene050647	-0.814645	1.39E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050647.t1	MTR_7g117350	96.396	111	4	0	136	246	268	378	3.42e-72	225
MS.gene050647.t1	MTR_7g117350	71.519	158	36	2	1	151	1	156	5.56e-72	224
MS.gene050647.t1	MTR_7g117350	96.396	111	4	0	136	246	260	370	3.58e-72	225
MS.gene050647.t1	MTR_7g117350	71.519	158	36	2	1	151	1	156	5.07e-72	224
MS.gene050647.t1	MTR_8g027745	76.543	81	15	2	158	238	286	362	4.65e-37	134
MS.gene050647.t1	MTR_8g027745	63.303	109	34	3	1	109	1	103	7.86e-36	130
MS.gene050647.t1	MTR_3g012550	59.756	82	29	1	157	238	79	156	1.04e-31	115
MS.gene050647.t1	MTR_8g099515	50.000	118	47	4	126	235	269	382	1.88e-27	108
MS.gene050647.t1	MTR_8g099515	44.578	83	42	3	33	111	38	120	4.76e-11	62.4
MS.gene050647.t1	MTR_8g099495	53.409	88	37	1	157	244	318	401	1.56e-23	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050647.t1	AT2G25410	55.446	101	38	3	137	237	281	374	1.56e-31	119
MS.gene050647.t1	AT2G25410	41.176	85	48	2	24	108	29	111	1.78e-11	63.5
MS.gene050647.t1	AT5G53110	54.386	114	42	3	128	235	266	375	2.40e-31	119
MS.gene050647.t1	AT5G53110	41.860	86	45	3	26	108	32	115	9.87e-12	64.3
MS.gene050647.t1	AT5G07040	48.148	108	50	2	134	239	40	143	3.53e-31	113
MS.gene050647.t1	AT2G46495	52.830	106	44	2	137	242	245	344	3.59e-30	115
MS.gene050647.t1	AT2G46495	44.706	85	45	1	24	108	26	108	1.08e-16	78.6
MS.gene050647.t1	AT2G46495	54.369	103	41	2	137	239	273	369	4.16e-30	115
MS.gene050647.t1	AT2G46495	44.706	85	45	1	24	108	26	108	1.23e-16	78.6
MS.gene050647.t1	AT1G28040	49.600	125	44	5	118	236	188	299	3.41e-29	111

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Find 55 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGGATAGCCACAATA+AGG	0.394873	7.3:-963051	None:intergenic
AAGAAGAGAATGAGAAGGGG+AGG	0.485062	7.3:-964468	None:intergenic
ACATAGAACACTCCTGAATA+AGG	0.342650	7.3:-963117	None:intergenic
ACATTACCATTACAAGGATG+AGG	0.557450	7.3:+964210	MS.gene050647:CDS
ACCATTACAAGGATGAGGAT+GGG	0.609830	7.3:+964215	MS.gene050647:CDS
ACCCATCCTCATCCTTGTAA+TGG	0.514749	7.3:-964216	None:intergenic
AGAAGAGAATGAGAAGGGGA+GGG	0.576754	7.3:-964467	None:intergenic
AGCCGAAGGCTGCCAGGAGT+GGG	0.501205	7.3:+964287	MS.gene050647:CDS
AGGACTATTGTCAAAATTCT+TGG	0.289643	7.3:+962965	MS.gene050647:CDS
AGGGAGAGTTGCGGCAAACT+GGG	0.473534	7.3:-964448	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCGCAATATCTACAATC+CGG	-	chr7.3:963495-963514	None:intergenic	30.0%
AATTGTGATCCTAACATGTT+CGG	-	chr7.3:963288-963307	None:intergenic	30.0%
AGGACTATTGTCAAAATTCT+TGG	+	chr7.3:962965-962984	MS.gene050647:CDS	30.0%
ATATGAAGAAGAGAATGAGA+AGG	-	chr7.3:964476-964495	None:intergenic	30.0%
ATGTCAACTCATTTGTTTAG+TGG	+	chr7.3:963607-963626	MS.gene050647:intron	30.0%
CAAAAACTTGACGATCTAAA+AGG	+	chr7.3:963691-963710	MS.gene050647:intron	30.0%
CCATCAACTTCTAATTGAAA+AGG	-	chr7.3:963021-963040	None:intergenic	30.0%
GACATGTGGAAAAATTCAAT+AGG	-	chr7.3:963592-963611	None:intergenic	30.0%
GTATCTGTCAATGAATAAGA+AGG	-	chr7.3:963999-964018	None:intergenic	30.0%
TATGAAGAAGAGAATGAGAA+GGG	-	chr7.3:964475-964494	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	962904	964505	962904	ID=MS.gene050647
chr7.3	mRNA	962904	964505	962904	ID=MS.gene050647.t1;Parent=MS.gene050647
chr7.3	exon	962904	963228	962904	ID=MS.gene050647.t1.exon1;Parent=MS.gene050647.t1
chr7.3	CDS	962904	963228	962904	ID=cds.MS.gene050647.t1;Parent=MS.gene050647.t1
chr7.3	exon	963503	963585	963503	ID=MS.gene050647.t1.exon2;Parent=MS.gene050647.t1
chr7.3	CDS	963503	963585	963503	ID=cds.MS.gene050647.t1;Parent=MS.gene050647.t1
chr7.3	exon	964173	964505	964173	ID=MS.gene050647.t1.exon3;Parent=MS.gene050647.t1
chr7.3	CDS	964173	964505	964173	ID=cds.MS.gene050647.t1;Parent=MS.gene050647.t1

Gene Sequence

>MS.gene050647

ATGGACATCTTGAAGTTCCTATTTCACTTGTTCATATTATTTCCTGTCATATATACCTCAGAGGACTATTGTCAAAATTCTTGGTGCAGTGAAAATAACATCCTTATTCGCTTCCCTTTTCAATTAGAAGTTGATGGTGATCCACTTCCTTATTGTGGCTATCCTGGTTTCAAATTATCTTGTACTAATGATAGCAAAACCGTTCTAACACTTCCTTATTCAGGAGTGTTCTATGTTCGCATAATCAACTATCTCGAACACCACATACAAGTCTATGACCCTCATCGTTGCCTTCCAAATCGTCTTCTAAGTCTCAACCTTTCAGGTTCACCTTTCGTCACCGAATTTCTTACTAACTACACTCTCTTAAGCTGCTCAACTCCGAACATGTTAGGATCACAATTCACACCTGTTGACTGTCTTAGCAACTCTACGCATTTTGTATCAGCTATCCCTTCACTGAGCTTCACCAATTCATTGCCTCAGTCTTGCTACATCATTAGAAATTTTTCAGTTCCAGTTGCAATTTCATATCCGGAATTTTTTTTAAACAACTTCAGTGAAGATCTTGAACTAACATGGTCTTCACCGGATTGTAGATATTGCGAATTACAAGATCGCACGTGCGGATTTGAGAGCAGAAACAACAATCAAGTTCGTTGTTTCTCTAATCAGCAAACAGGTACCTATTGAATTTTTCCACATGTCAACTCATTTGTTTAGTGGTTCATGACATGATATTATTGCATCATTCAATATAAATGTTTTGTCAACTTGCTTGCTTAGTCAAAAACTTGACGATCTAAAAGGTTCATATAATATATTGAATGGAGCTGACATATACGGAAATTTATTGAAAATTTTAAGTCAATGATATGGTATCAGTAACCATAACGGTAACATTTTTATGTGTCCGCGGTGGAGACTTATGCCAGCGAGAGTTCGATGGCCACAGTAAAAGGATTTTAGCATGCTTAAAATTTGACATACATACATGTTTTAGTAATAAACAACTAAAGGCCAAAAACAGGTGACAAACTTTGGTGAATACAACGAGATACATGCAAATTGAAAGTAGAAAGTAACATCAAGCCTTCTTATTCATTGACAGATACTAACGTATTTATTCATAATTACTCAGAAATCAAAACTTTTCCATCTTCAGGTCATTCACAACATAGTCTTATGATTTCTAGAATCATAATATTATCAATTGGGGGAGCAGCTATGATGTTTGCAATTGGGATAGGATGTGTAACATGCTTCAAGCGTAGAAGAAGGACAATATCAGCTGAGCCTTCCATTGACATTACCATTACAAGGATGAGGATGGGTCTGGATGAGTCAACAATTGAGTCTTTTGGGAAGGTTGTGTTAGGAGAGAGCCGAAGGCTGCCAGGAGTGGGACACAATGATGGAACCGGATGTTGCTCAATATGCCTCTCAGAGTACAAAAGTAAGGACATAATTAGATGCATTCCTGAATGCAAACACTGTTTCCATGCTCATTGCATTGATGAATGGCTTCGCATGAACGCTACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCATTCTCTTCTTCATATATCATCATGA

Protein sequence

>MS.gene050647.t1

MDILKFLFHLFILFPVIYTSEDYCQNSWCSENNILIRFPFQLEVDGDPLPYCGYPGFKLSCTNDSKTVLTLPYSGVFYVRIINYLEHHIQVYDPHRCLPNRLLSLNLSDIANYKIARADLRAETTIKFVVSLISKQRRRRTISAEPSIDITITRMRMGLDESTIESFGKVVLGESRRLPGVGHNDGTGCCSICLSEYKSKDIIRCIPECKHCFHAHCIDEWLRMNATCPVCRNSPSPSHSLLHISS