AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050647


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050647.t1 MTR_7g117350 96.396 111 4 0 136 246 268 378 3.42e-72 225
MS.gene050647.t1 MTR_7g117350 71.519 158 36 2 1 151 1 156 5.56e-72 224
MS.gene050647.t1 MTR_7g117350 96.396 111 4 0 136 246 260 370 3.58e-72 225
MS.gene050647.t1 MTR_7g117350 71.519 158 36 2 1 151 1 156 5.07e-72 224
MS.gene050647.t1 MTR_8g027745 76.543 81 15 2 158 238 286 362 4.65e-37 134
MS.gene050647.t1 MTR_8g027745 63.303 109 34 3 1 109 1 103 7.86e-36 130
MS.gene050647.t1 MTR_3g012550 59.756 82 29 1 157 238 79 156 1.04e-31 115
MS.gene050647.t1 MTR_8g099515 50.000 118 47 4 126 235 269 382 1.88e-27 108
MS.gene050647.t1 MTR_8g099515 44.578 83 42 3 33 111 38 120 4.76e-11 62.4
MS.gene050647.t1 MTR_8g099495 53.409 88 37 1 157 244 318 401 1.56e-23 98.2
MS.gene050647.t1 MTR_3g091200 53.846 78 32 1 158 235 303 376 9.97e-23 95.9
MS.gene050647.t1 MTR_3g091200 41.905 105 57 2 6 108 15 117 6.00e-15 73.9
MS.gene050647.t1 MTR_5g009190 55.696 79 31 1 157 235 265 339 3.72e-21 90.9
MS.gene050647.t1 MTR_5g009210 55.000 80 32 1 157 236 286 361 4.15e-21 90.9
MS.gene050647.t1 MTR_5g009200 52.174 92 39 2 145 236 310 396 9.48e-21 90.5
MS.gene050647.t1 MTR_1g056350 42.857 84 45 1 155 238 71 151 8.79e-20 83.6
MS.gene050647.t1 MTR_8g028465 43.902 82 38 2 157 238 89 162 2.88e-18 80.5
MS.gene050647.t1 MTR_7g079280 45.122 82 41 2 157 238 79 156 1.49e-17 78.2
MS.gene050647.t1 MTR_7g079290 42.105 76 42 2 158 233 125 198 3.23e-15 72.4
MS.gene050647.t1 MTR_5g064990 35.965 114 65 3 130 238 81 191 2.76e-14 72.0
MS.gene050647.t1 MTR_7g117340 61.818 55 21 0 51 105 15 69 3.20e-14 67.8
MS.gene050647.t1 MTR_1g090480 53.061 49 23 0 190 238 102 150 3.27e-14 68.9
MS.gene050647.t1 MTR_3g100400 37.079 89 50 2 154 242 126 208 5.64e-14 70.9
MS.gene050647.t1 MTR_1g492830 60.000 45 18 0 190 234 88 132 1.07e-13 68.6
MS.gene050647.t1 MTR_1g070425 40.789 76 42 1 158 233 68 140 1.28e-13 67.4
MS.gene050647.t1 MTR_8g009190 48.529 68 31 1 175 242 94 157 1.41e-13 69.3
MS.gene050647.t1 MTR_7g116180 40.789 76 42 1 158 233 67 139 1.48e-13 67.4
MS.gene050647.t1 MTR_7g116220 39.474 76 43 1 158 233 70 142 1.58e-13 67.0
MS.gene050647.t1 MTR_8g032690 65.116 43 15 0 190 232 19 61 1.76e-13 65.1
MS.gene050647.t1 MTR_1g082550 38.947 95 53 3 154 246 94 185 1.85e-13 69.3
MS.gene050647.t1 MTR_7g113800 40.909 88 43 3 158 241 91 173 2.89e-13 68.9
MS.gene050647.t1 MTR_1g070140 34.343 99 60 1 138 236 83 176 3.61e-13 68.6
MS.gene050647.t1 MTR_2g044570 48.148 54 28 0 187 240 80 133 5.61e-13 67.4
MS.gene050647.t1 MTR_5g026720 45.455 55 30 0 184 238 87 141 9.76e-13 64.7
MS.gene050647.t1 MTR_7g076250 58.140 43 18 0 190 232 90 132 1.07e-12 65.1
MS.gene050647.t1 MTR_6g087150 34.783 115 62 5 125 232 53 161 1.28e-12 67.0
MS.gene050647.t1 MTR_3g110190 51.163 43 21 0 190 232 92 134 1.57e-12 66.6
MS.gene050647.t1 MTR_1g031320 35.849 106 62 3 8 108 3 107 1.88e-12 67.0
MS.gene050647.t1 MTR_3g071300 29.907 107 73 2 128 234 46 150 2.07e-12 63.9
MS.gene050647.t1 MTR_3g095560 33.333 84 51 1 149 232 100 178 2.61e-12 65.1
MS.gene050647.t1 MTR_7g073200 34.694 98 58 1 137 234 60 151 2.63e-12 63.9
MS.gene050647.t1 MTR_4g056590 38.462 78 39 1 155 232 97 165 3.18e-12 63.9
MS.gene050647.t1 MTR_5g026730 47.273 55 28 1 185 238 88 142 3.35e-12 63.5
MS.gene050647.t1 MTR_8g066780 35.632 87 52 1 157 243 113 195 4.06e-12 65.5
MS.gene050647.t1 MTR_7g116210 54.545 44 20 0 190 233 35 78 4.75e-12 61.6
MS.gene050647.t1 MTR_1g090460 51.020 49 24 0 190 238 95 143 5.71e-12 62.4
MS.gene050647.t1 MTR_2g090905 25.893 112 77 1 132 237 7 118 6.79e-12 61.6
MS.gene050647.t1 MTR_1g074190 33.962 106 54 3 134 234 81 175 6.83e-12 64.7
MS.gene050647.t1 MTR_5g092750 46.667 45 24 0 189 233 184 228 7.74e-12 63.5
MS.gene050647.t1 MTR_7g116200 54.545 44 20 0 190 233 93 136 9.04e-12 62.4
MS.gene050647.t1 MTR_3g099650 36.709 79 47 1 154 232 103 178 9.85e-12 64.3
MS.gene050647.t1 MTR_5g092790 44.444 45 25 0 189 233 184 228 1.15e-11 63.2
MS.gene050647.t1 MTR_2g436100 33.708 89 53 2 149 237 84 166 1.35e-11 63.5
MS.gene050647.t1 MTR_2g090950 26.786 112 76 1 132 237 59 170 1.69e-11 62.8
MS.gene050647.t1 MTR_1g043410 34.783 92 57 1 145 236 81 169 1.83e-11 63.2
MS.gene050647.t1 MTR_8g092985 34.211 76 45 1 158 233 111 181 2.08e-11 62.0
MS.gene050647.t1 MTR_2g079320 38.356 73 34 1 172 233 130 202 2.23e-11 61.6
MS.gene050647.t1 MTR_6g055030 51.163 43 21 0 190 232 126 168 2.56e-11 62.8
MS.gene050647.t1 MTR_8g093010 31.765 85 53 1 149 233 98 177 2.60e-11 61.6
MS.gene050647.t1 MTR_3g091620 38.372 86 37 2 153 233 96 170 2.60e-11 63.2
MS.gene050647.t1 MTR_8g092930 34.211 76 45 1 158 233 112 182 3.06e-11 61.6
MS.gene050647.t1 MTR_5g030010 36.559 93 47 2 158 244 122 208 3.39e-11 62.8
MS.gene050647.t1 MTR_8g092840 34.211 76 45 1 158 233 113 183 3.50e-11 61.6
MS.gene050647.t1 MTR_3g086700 45.283 53 29 0 186 238 71 123 4.38e-11 60.5
MS.gene050647.t1 MTR_8g092960 34.211 76 45 1 158 233 103 173 4.41e-11 61.2
MS.gene050647.t1 MTR_5g064980 35.000 80 49 1 158 237 108 184 4.87e-11 62.4
MS.gene050647.t1 MTR_4g106680 30.556 108 59 2 136 238 84 180 5.52e-11 62.0
MS.gene050647.t1 MTR_1g031540 31.776 107 69 2 3 109 7 109 5.70e-11 62.8
MS.gene050647.t1 MTR_6g055030 48.889 45 23 0 188 232 93 137 5.87e-11 61.6
MS.gene050647.t1 MTR_6g007737 40.260 77 40 2 158 234 133 203 6.54e-11 62.0
MS.gene050647.t1 MTR_8g063660 48.889 45 23 0 190 234 94 138 6.65e-11 61.6
MS.gene050647.t1 MTR_2g041200 50.000 48 24 0 190 237 109 156 7.25e-11 59.7
MS.gene050647.t1 MTR_5g034790 48.889 45 23 0 190 234 142 186 7.45e-11 61.6
MS.gene050647.t1 MTR_3g086730 46.154 52 28 0 186 237 71 122 7.73e-11 60.8
MS.gene050647.t1 MTR_3g078470 34.211 76 46 1 158 233 76 147 8.06e-11 60.5
MS.gene050647.t1 MTR_8g089880 39.474 76 40 3 157 232 126 195 8.19e-11 61.2
MS.gene050647.t1 MTR_3g116000 54.545 44 20 0 190 233 104 147 8.33e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050647.t1 AT2G25410 55.446 101 38 3 137 237 281 374 1.56e-31 119
MS.gene050647.t1 AT2G25410 41.176 85 48 2 24 108 29 111 1.78e-11 63.5
MS.gene050647.t1 AT5G53110 54.386 114 42 3 128 235 266 375 2.40e-31 119
MS.gene050647.t1 AT5G53110 41.860 86 45 3 26 108 32 115 9.87e-12 64.3
MS.gene050647.t1 AT5G07040 48.148 108 50 2 134 239 40 143 3.53e-31 113
MS.gene050647.t1 AT2G46495 52.830 106 44 2 137 242 245 344 3.59e-30 115
MS.gene050647.t1 AT2G46495 44.706 85 45 1 24 108 26 108 1.08e-16 78.6
MS.gene050647.t1 AT2G46495 54.369 103 41 2 137 239 273 369 4.16e-30 115
MS.gene050647.t1 AT2G46495 44.706 85 45 1 24 108 26 108 1.23e-16 78.6
MS.gene050647.t1 AT1G28040 49.600 125 44 5 118 236 188 299 3.41e-29 111
MS.gene050647.t1 AT2G46493 60.759 79 27 2 156 234 108 182 4.97e-26 100
MS.gene050647.t1 AT2G46494 49.038 104 46 3 134 234 261 360 1.34e-23 97.8
MS.gene050647.t1 AT2G46494 48.333 60 31 0 49 108 48 107 7.03e-12 64.7
MS.gene050647.t1 AT2G35910 49.383 81 35 2 158 238 121 195 6.71e-22 90.5
MS.gene050647.t1 AT5G06490 42.708 96 54 1 151 245 89 184 1.53e-21 89.4
MS.gene050647.t1 AT3G61550 47.674 86 40 2 158 238 99 184 1.25e-20 87.0
MS.gene050647.t1 AT2G46160 40.594 101 54 2 142 238 88 186 3.47e-18 80.5
MS.gene050647.t1 AT2G46160 40.594 101 54 2 142 238 88 186 3.47e-18 80.5
MS.gene050647.t1 AT5G36001 63.830 47 17 0 190 236 264 310 8.47e-17 78.6
MS.gene050647.t1 AT4G09100 41.975 81 42 2 158 237 56 132 3.50e-16 73.2
MS.gene050647.t1 AT4G09120 42.857 84 45 1 149 232 85 165 4.85e-16 76.6
MS.gene050647.t1 AT2G42350 36.190 105 60 1 139 243 56 153 2.05e-15 73.2
MS.gene050647.t1 AT4G09110 36.111 108 65 2 125 232 62 165 2.60e-15 74.3
MS.gene050647.t1 AT4G09130 41.667 84 46 2 149 232 82 162 4.41e-15 73.9
MS.gene050647.t1 AT1G04360 38.889 108 53 3 136 236 79 180 2.69e-14 72.0
MS.gene050647.t1 AT5G27420 39.394 99 44 4 138 234 84 168 4.37e-14 71.2
MS.gene050647.t1 AT5G05810 38.202 89 49 2 154 242 116 198 7.07e-14 70.9
MS.gene050647.t1 AT4G28890 40.506 79 41 1 158 236 97 169 1.29e-13 70.1
MS.gene050647.t1 AT3G05200 38.095 84 45 2 151 232 92 170 2.21e-13 69.3
MS.gene050647.t1 AT3G18930 38.272 81 46 2 158 234 120 200 2.63e-13 69.3
MS.gene050647.t1 AT3G18930 38.272 81 46 2 158 234 120 200 2.63e-13 69.3
MS.gene050647.t1 AT3G18930 38.272 81 46 2 158 234 120 200 2.63e-13 69.3
MS.gene050647.t1 AT1G35330 39.286 84 48 1 154 237 96 176 2.73e-13 68.6
MS.gene050647.t1 AT2G20030 54.545 44 20 0 190 233 124 167 3.13e-13 68.9
MS.gene050647.t1 AT1G49220 35.000 100 58 2 136 233 84 178 5.02e-13 67.0
MS.gene050647.t1 AT3G48030 52.000 50 24 0 190 239 207 256 7.27e-13 67.8
MS.gene050647.t1 AT3G48030 36.782 87 40 2 158 239 102 178 8.30e-13 66.6
MS.gene050647.t1 AT1G14200 41.667 72 34 2 161 232 87 150 1.06e-12 65.1
MS.gene050647.t1 AT1G32361 44.737 76 34 1 157 232 129 196 1.11e-12 67.0
MS.gene050647.t1 AT5G57750 40.678 59 33 1 176 234 110 166 2.02e-12 64.7
MS.gene050647.t1 AT1G49200 39.474 76 41 1 158 233 109 179 2.02e-12 65.1
MS.gene050647.t1 AT5G66070 32.773 119 65 5 126 232 103 218 2.07e-12 65.1
MS.gene050647.t1 AT5G66070 32.773 119 65 5 126 232 103 218 2.07e-12 65.1
MS.gene050647.t1 AT4G40070 43.038 79 42 2 156 234 93 168 2.93e-12 65.9
MS.gene050647.t1 AT1G72200 40.449 89 48 3 158 244 115 200 3.30e-12 65.9
MS.gene050647.t1 AT1G49210 38.158 76 42 1 158 233 108 178 3.77e-12 64.3
MS.gene050647.t1 AT2G34990 39.759 83 44 3 151 232 61 138 5.31e-12 64.7
MS.gene050647.t1 AT2G34990 39.759 83 44 3 151 232 83 160 5.42e-12 65.1
MS.gene050647.t1 AT4G35840 33.065 124 63 6 126 232 113 233 7.28e-12 63.5
MS.gene050647.t1 AT5G43420 35.185 108 52 3 138 232 78 180 7.45e-12 64.7
MS.gene050647.t1 AT5G40250 49.057 53 26 1 190 241 143 195 7.47e-12 64.7
MS.gene050647.t1 AT2G42360 34.307 137 70 5 112 237 28 155 9.12e-12 63.5
MS.gene050647.t1 AT1G22500 39.535 86 47 3 158 241 89 171 1.16e-11 64.3
MS.gene050647.t1 AT4G33565 50.980 51 24 1 182 232 210 259 1.21e-11 63.9
MS.gene050647.t1 AT5G17600 39.080 87 41 3 158 238 116 196 1.39e-11 63.9
MS.gene050647.t1 AT2G47560 44.444 54 30 0 190 243 108 161 1.44e-11 62.8
MS.gene050647.t1 AT3G03550 41.333 75 36 3 159 232 134 201 1.67e-11 63.5
MS.gene050647.t1 AT2G35000 34.043 94 55 2 143 232 87 177 1.77e-11 63.5
MS.gene050647.t1 AT4G10150 32.824 131 73 4 126 246 44 169 1.81e-11 62.4
MS.gene050647.t1 AT5G66070 34.021 97 52 3 148 232 146 242 1.85e-11 62.8
MS.gene050647.t1 AT3G16720 34.066 91 53 2 143 233 79 162 2.00e-11 63.2
MS.gene050647.t1 AT2G35420 42.667 75 37 2 158 232 77 145 2.28e-11 62.4
MS.gene050647.t1 AT1G72310 53.333 45 21 0 190 234 127 171 2.61e-11 62.8
MS.gene050647.t1 AT1G49230 35.526 76 44 1 158 233 104 174 2.67e-11 62.0
MS.gene050647.t1 AT4G17905 37.333 75 43 1 158 232 153 223 3.02e-11 62.8
MS.gene050647.t1 AT4G17905 37.333 75 43 1 158 232 127 197 4.11e-11 62.4
MS.gene050647.t1 AT4G10160 46.552 58 29 1 190 245 97 154 6.50e-11 60.8
MS.gene050647.t1 AT3G62690 40.678 59 35 0 183 241 106 164 6.67e-11 61.2
MS.gene050647.t1 AT3G18773 36.842 76 43 1 158 233 103 173 6.81e-11 60.8
MS.gene050647.t1 AT5G10380 42.105 76 38 3 157 232 108 177 6.99e-11 61.6
MS.gene050647.t1 AT1G53820 32.727 110 64 2 137 246 77 176 8.06e-11 61.2
MS.gene050647.t1 AT1G33480 36.667 90 50 1 151 240 68 150 9.05e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTAAGTCTCAACCTTTC+AGG 0.145073 7.3:+963207 MS.gene050647:CDS
GTTCTAACACTTCCTTATTC+AGG 0.274787 7.3:+963105 MS.gene050647:CDS
TGGAAACAGTGTTTGCATTC+AGG 0.283416 7.3:-964383 None:intergenic
GAGGGAGAGTTGCGGCAAAC+TGG 0.288014 7.3:-964449 None:intergenic
AGGACTATTGTCAAAATTCT+TGG 0.289643 7.3:+962965 MS.gene050647:CDS
ATAATATGAACAAGTGAAAT+AGG 0.301147 7.3:-962921 None:intergenic
ATTGAAAAGGGAAGCGAATA+AGG 0.319637 7.3:-963005 None:intergenic
CTTCCTTATTGTGGCTATCC+TGG 0.326784 7.3:+963048 MS.gene050647:CDS
GAGTCAACAATTGAGTCTTT+TGG 0.329087 7.3:+964245 MS.gene050647:CDS
ACATAGAACACTCCTGAATA+AGG 0.342650 7.3:-963117 None:intergenic
TTGAGACTTAGAAGACGATT+TGG 0.359531 7.3:-963198 None:intergenic
AAACCAGGATAGCCACAATA+AGG 0.394873 7.3:-963051 None:intergenic
CCATCAACTTCTAATTGAAA+AGG 0.406495 7.3:-963018 None:intergenic
CCATTGACATTACCATTACA+AGG 0.413444 7.3:+964204 MS.gene050647:CDS
CCATCATTGTGTCCCACTCC+TGG 0.429898 7.3:-964299 None:intergenic
CCTTGTAATGGTAATGTCAA+TGG 0.431956 7.3:-964204 None:intergenic
GTCCCACTCCTGGCAGCCTT+CGG 0.439695 7.3:-964289 None:intergenic
ATGCTCATTGCATTGATGAA+TGG 0.451222 7.3:+964405 MS.gene050647:CDS
TGTTTCTCTAATCAGCAAAC+AGG 0.461943 7.3:+963564 MS.gene050647:CDS
GGAGAGAGCCGAAGGCTGCC+AGG 0.468947 7.3:+964281 MS.gene050647:CDS
AGGGAGAGTTGCGGCAAACT+GGG 0.473534 7.3:-964448 None:intergenic
AAGAAGAGAATGAGAAGGGG+AGG 0.485062 7.3:-964468 None:intergenic
TATGAAGAAGAGAATGAGAA+GGG 0.489732 7.3:-964472 None:intergenic
CATCAACTTCTAATTGAAAA+GGG 0.490891 7.3:-963017 None:intergenic
TACAAGGATGAGGATGGGTC+TGG 0.495233 7.3:+964220 MS.gene050647:CDS
AGCCGAAGGCTGCCAGGAGT+GGG 0.501205 7.3:+964287 MS.gene050647:CDS
CCTCTCAGAGTACAAAAGTA+AGG 0.505690 7.3:+964343 MS.gene050647:CDS
TCCTCTGAGGTATATATGAC+AGG 0.505891 7.3:-962946 None:intergenic
GTGGGACACAATGATGGAAC+CGG 0.512250 7.3:+964305 MS.gene050647:CDS
GAGCCGAAGGCTGCCAGGAG+TGG 0.514338 7.3:+964286 MS.gene050647:CDS
ACCCATCCTCATCCTTGTAA+TGG 0.514749 7.3:-964216 None:intergenic
GGTGATCCACTTCCTTATTG+TGG 0.515086 7.3:+963039 MS.gene050647:CDS
CCAGGAGTGGGACACAATGA+TGG 0.533449 7.3:+964299 MS.gene050647:CDS
TACCATTACAAGGATGAGGA+TGG 0.551009 7.3:+964214 MS.gene050647:CDS
TTGTGTTAGGAGAGAGCCGA+AGG 0.554886 7.3:+964273 MS.gene050647:CDS
ACATTACCATTACAAGGATG+AGG 0.557450 7.3:+964210 MS.gene050647:CDS
ATATGAAGAAGAGAATGAGA+AGG 0.558213 7.3:-964473 None:intergenic
GGATAGCCACAATAAGGAAG+TGG 0.561096 7.3:-963045 None:intergenic
AGAAGAGAATGAGAAGGGGA+GGG 0.576754 7.3:-964467 None:intergenic
GAGGCATATTGAGCAACATC+CGG 0.580177 7.3:-964324 None:intergenic
GACTTAGAAGACGATTTGGA+AGG 0.584221 7.3:-963194 None:intergenic
TGACGAAAGGTGAACCTGAA+AGG 0.587181 7.3:-963221 None:intergenic
ATTCATCAATGCAATGAGCA+TGG 0.597810 7.3:-964403 None:intergenic
CATGCTTCAAGCGTAGAAGA+AGG 0.603122 7.3:+964162 MS.gene050647:intron
ACCATTACAAGGATGAGGAT+GGG 0.609830 7.3:+964215 MS.gene050647:CDS
GTAATGGTAATGTCAATGGA+AGG 0.609921 7.3:-964200 None:intergenic
ATGAAGAAGAGAATGAGAAG+GGG 0.612049 7.3:-964471 None:intergenic
GATTTGGAAGGCAACGATGA+GGG 0.613926 7.3:-963182 None:intergenic
TGAATAAGGAAGTGTTAGAA+CGG 0.614570 7.3:-963103 None:intergenic
GAGAAGGGGAGGGAGAGTTG+CGG 0.620573 7.3:-964457 None:intergenic
GTACAAGATAATTTGAAACC+AGG 0.621561 7.3:-963066 None:intergenic
GAATTACAAGATCGCACGTG+CGG 0.639269 7.3:+963510 MS.gene050647:CDS
CGATTTGGAAGGCAACGATG+AGG 0.644616 7.3:-963183 None:intergenic
TCCTGTCATATATACCTCAG+AGG 0.652150 7.3:+962945 MS.gene050647:CDS
GAGGGTCATAGACTTGTATG+TGG 0.684388 7.3:-963164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTGTTTAAAAAAAATTC+CGG - chr7.3:963441-963460 None:intergenic 15.0%
!! AATCATAATATTATCAATTG+GGG + chr7.3:964100-964119 MS.gene050647:intron 15.0%
!! AGAATCATAATATTATCAAT+TGG + chr7.3:964098-964117 MS.gene050647:intron 15.0%
!! GAATCATAATATTATCAATT+GGG + chr7.3:964099-964118 MS.gene050647:intron 15.0%
!!! AAAATTTTAAGTCAATGATA+TGG + chr7.3:963760-963779 MS.gene050647:intron 15.0%
!!! TTTTAGTAATAAACAACTAA+AGG + chr7.3:963901-963920 MS.gene050647:intron 15.0%
!! ATAATATGAACAAGTGAAAT+AGG - chr7.3:962924-962943 None:intergenic 20.0%
!! ATCATAATATTATCAATTGG+GGG + chr7.3:964101-964120 MS.gene050647:intron 20.0%
!! GGTTCATATAATATATTGAA+TGG + chr7.3:963712-963731 MS.gene050647:intron 20.0%
! ACATAAAAATGTTACCGTTA+TGG - chr7.3:963795-963814 None:intergenic 25.0%
! AGTGTAGTTAGTAAGAAATT+CGG - chr7.3:963247-963266 None:intergenic 25.0%
! CATCAACTTCTAATTGAAAA+GGG - chr7.3:963020-963039 None:intergenic 25.0%
AATTCGCAATATCTACAATC+CGG - chr7.3:963495-963514 None:intergenic 30.0%
AATTGTGATCCTAACATGTT+CGG - chr7.3:963288-963307 None:intergenic 30.0%
AGGACTATTGTCAAAATTCT+TGG + chr7.3:962965-962984 MS.gene050647:CDS 30.0%
ATATGAAGAAGAGAATGAGA+AGG - chr7.3:964476-964495 None:intergenic 30.0%
ATGTCAACTCATTTGTTTAG+TGG + chr7.3:963607-963626 MS.gene050647:intron 30.0%
CAAAAACTTGACGATCTAAA+AGG + chr7.3:963691-963710 MS.gene050647:intron 30.0%
CCATCAACTTCTAATTGAAA+AGG - chr7.3:963021-963040 None:intergenic 30.0%
GACATGTGGAAAAATTCAAT+AGG - chr7.3:963592-963611 None:intergenic 30.0%
GTATCTGTCAATGAATAAGA+AGG - chr7.3:963999-964018 None:intergenic 30.0%
TATGAAGAAGAGAATGAGAA+GGG - chr7.3:964475-964494 None:intergenic 30.0%
TATGGTATCAGTAACCATAA+CGG + chr7.3:963778-963797 MS.gene050647:intron 30.0%
! AGTCAACAATTGAGTCTTTT+GGG + chr7.3:964246-964265 MS.gene050647:CDS 30.0%
! ATCAAAACTTTTCCATCTTC+AGG + chr7.3:964047-964066 MS.gene050647:intron 30.0%
! ATGCTAAAATCCTTTTACTG+TGG - chr7.3:963856-963875 None:intergenic 30.0%
! CCTTTTCAATTAGAAGTTGA+TGG + chr7.3:963018-963037 MS.gene050647:CDS 30.0%
! GTACAAGATAATTTGAAACC+AGG - chr7.3:963069-963088 None:intergenic 30.0%
! TAAACAAATGAGTTGACATG+TGG - chr7.3:963606-963625 None:intergenic 30.0%
!! TGAATAAGGAAGTGTTAGAA+CGG - chr7.3:963106-963125 None:intergenic 30.0%
AACAACTAAAGGCCAAAAAC+AGG + chr7.3:963912-963931 MS.gene050647:intron 35.0%
ACATAGAACACTCCTGAATA+AGG - chr7.3:963120-963139 None:intergenic 35.0%
ACATTACCATTACAAGGATG+AGG + chr7.3:964210-964229 MS.gene050647:CDS 35.0%
ATGAAGAAGAGAATGAGAAG+GGG - chr7.3:964474-964493 None:intergenic 35.0%
ATGATGTTTGCAATTGGGAT+AGG + chr7.3:964131-964150 MS.gene050647:intron 35.0%
ATTCATCAATGCAATGAGCA+TGG - chr7.3:964406-964425 None:intergenic 35.0%
ATTGAAAAGGGAAGCGAATA+AGG - chr7.3:963008-963027 None:intergenic 35.0%
CAAAAACAGGTGACAAACTT+TGG + chr7.3:963925-963944 MS.gene050647:intron 35.0%
CAGCTATGATGTTTGCAATT+GGG + chr7.3:964126-964145 MS.gene050647:intron 35.0%
CCATTGACATTACCATTACA+AGG + chr7.3:964204-964223 MS.gene050647:CDS 35.0%
GTGAAGATCTTGAACTAACA+TGG + chr7.3:963463-963482 MS.gene050647:intron 35.0%
GTTCTAACACTTCCTTATTC+AGG + chr7.3:963105-963124 MS.gene050647:CDS 35.0%
TCCAGTTGCAATTTCATATC+CGG + chr7.3:963419-963438 MS.gene050647:intron 35.0%
TGTTTCTCTAATCAGCAAAC+AGG + chr7.3:963564-963583 MS.gene050647:CDS 35.0%
TTGAATGGAGCTGACATATA+CGG + chr7.3:963727-963746 MS.gene050647:intron 35.0%
TTGAGACTTAGAAGACGATT+TGG - chr7.3:963201-963220 None:intergenic 35.0%
! ATGCTCATTGCATTGATGAA+TGG + chr7.3:964405-964424 MS.gene050647:CDS 35.0%
! CAAAGTTTGTCACCTGTTTT+TGG - chr7.3:963927-963946 None:intergenic 35.0%
! CCTTGTAATGGTAATGTCAA+TGG - chr7.3:964207-964226 None:intergenic 35.0%
! GAGTCAACAATTGAGTCTTT+TGG + chr7.3:964245-964264 MS.gene050647:CDS 35.0%
! GTAACATTTTTATGTGTCCG+CGG + chr7.3:963800-963819 MS.gene050647:intron 35.0%
! GTAATGGTAATGTCAATGGA+AGG - chr7.3:964203-964222 None:intergenic 35.0%
!! AACAATTGAGTCTTTTGGGA+AGG + chr7.3:964250-964269 MS.gene050647:CDS 35.0%
!! ATTTTGACAATAGTCCTCTG+AGG - chr7.3:962962-962981 None:intergenic 35.0%
AAACCAGGATAGCCACAATA+AGG - chr7.3:963054-963073 None:intergenic 40.0%
AATTGGTGAAGCTCAGTGAA+GGG - chr7.3:963359-963378 None:intergenic 40.0%
ACCATTACAAGGATGAGGAT+GGG + chr7.3:964215-964234 MS.gene050647:CDS 40.0%
CCTCTCAGAGTACAAAAGTA+AGG + chr7.3:964343-964362 MS.gene050647:CDS 40.0%
CTAATGATGTAGCAAGACTG+AGG - chr7.3:963387-963406 None:intergenic 40.0%
CTTCTAAGTCTCAACCTTTC+AGG + chr7.3:963207-963226 MS.gene050647:CDS 40.0%
GCAGCTATGATGTTTGCAAT+TGG + chr7.3:964125-964144 MS.gene050647:intron 40.0%
TACCATTACAAGGATGAGGA+TGG + chr7.3:964214-964233 MS.gene050647:CDS 40.0%
TCCGGATATGAAATTGCAAC+TGG - chr7.3:963423-963442 None:intergenic 40.0%
TCCTGTCATATATACCTCAG+AGG + chr7.3:962945-962964 MS.gene050647:CDS 40.0%
TGAACTAACATGGTCTTCAC+CGG + chr7.3:963473-963492 MS.gene050647:intron 40.0%
TGGAAACAGTGTTTGCATTC+AGG - chr7.3:964386-964405 None:intergenic 40.0%
TGTTGTGAATGACCTGAAGA+TGG - chr7.3:964062-964081 None:intergenic 40.0%
! GACTTAGAAGACGATTTGGA+AGG - chr7.3:963197-963216 None:intergenic 40.0%
! GTAAGAAATTCGGTGACGAA+AGG - chr7.3:963237-963256 None:intergenic 40.0%
!! CCTTACTTTTGTACTCTGAG+AGG - chr7.3:964346-964365 None:intergenic 40.0%
!! TCCTCTGAGGTATATATGAC+AGG - chr7.3:962949-962968 None:intergenic 40.0%
!! TCTTTTGGGAAGGTTGTGTT+AGG + chr7.3:964260-964279 MS.gene050647:CDS 40.0%
AAGAAGAGAATGAGAAGGGG+AGG - chr7.3:964471-964490 None:intergenic 45.0%
ACCCATCCTCATCCTTGTAA+TGG - chr7.3:964219-964238 None:intergenic 45.0%
AGAAGAGAATGAGAAGGGGA+GGG - chr7.3:964470-964489 None:intergenic 45.0%
AGTTCGATGGCCACAGTAAA+AGG + chr7.3:963843-963862 MS.gene050647:intron 45.0%
CATGCTTCAAGCGTAGAAGA+AGG + chr7.3:964162-964181 MS.gene050647:intron 45.0%
CTTCCTTATTGTGGCTATCC+TGG + chr7.3:963048-963067 MS.gene050647:CDS 45.0%
GAATTACAAGATCGCACGTG+CGG + chr7.3:963510-963529 MS.gene050647:CDS 45.0%
GAATTGGTGAAGCTCAGTGA+AGG - chr7.3:963360-963379 None:intergenic 45.0%
GAGGCATATTGAGCAACATC+CGG - chr7.3:964327-964346 None:intergenic 45.0%
GAGGGTCATAGACTTGTATG+TGG - chr7.3:963167-963186 None:intergenic 45.0%
GAGTTGCTAAGACAGTCAAC+AGG - chr7.3:963315-963334 None:intergenic 45.0%
GATTTGGAAGGCAACGATGA+GGG - chr7.3:963185-963204 None:intergenic 45.0%
GCAAGACTGAGGCAATGAAT+TGG - chr7.3:963376-963395 None:intergenic 45.0%
GGATAGCCACAATAAGGAAG+TGG - chr7.3:963048-963067 None:intergenic 45.0%
GGTGATCCACTTCCTTATTG+TGG + chr7.3:963039-963058 MS.gene050647:CDS 45.0%
TGACGAAAGGTGAACCTGAA+AGG - chr7.3:963224-963243 None:intergenic 45.0%
TGCTCAACTCCGAACATGTT+AGG + chr7.3:963276-963295 MS.gene050647:intron 45.0%
! ACATTTTTATGTGTCCGCGG+TGG + chr7.3:963803-963822 MS.gene050647:intron 45.0%
TACAAGGATGAGGATGGGTC+TGG + chr7.3:964220-964239 MS.gene050647:CDS 50.0%
TTATGCCAGCGAGAGTTCGA+TGG + chr7.3:963830-963849 MS.gene050647:intron 50.0%
TTGTGTTAGGAGAGAGCCGA+AGG + chr7.3:964273-964292 MS.gene050647:CDS 50.0%
! CGATTTGGAAGGCAACGATG+AGG - chr7.3:963186-963205 None:intergenic 50.0%
! GTGGGACACAATGATGGAAC+CGG + chr7.3:964305-964324 MS.gene050647:CDS 50.0%
AGGGAGAGTTGCGGCAAACT+GGG - chr7.3:964451-964470 None:intergenic 55.0%
CCAGGAGTGGGACACAATGA+TGG + chr7.3:964299-964318 MS.gene050647:CDS 55.0%
CCATCATTGTGTCCCACTCC+TGG - chr7.3:964302-964321 None:intergenic 55.0%
GAGAAGGGGAGGGAGAGTTG+CGG - chr7.3:964460-964479 None:intergenic 60.0%
GAGGGAGAGTTGCGGCAAAC+TGG - chr7.3:964452-964471 None:intergenic 60.0%
GCTGGCATAAGTCTCCACCG+CGG - chr7.3:963820-963839 None:intergenic 60.0%
TGTGGCCATCGAACTCTCGC+TGG - chr7.3:963838-963857 None:intergenic 60.0%
AGCCGAAGGCTGCCAGGAGT+GGG + chr7.3:964287-964306 MS.gene050647:CDS 65.0%
GTCCCACTCCTGGCAGCCTT+CGG - chr7.3:964292-964311 None:intergenic 65.0%
GAGCCGAAGGCTGCCAGGAG+TGG + chr7.3:964286-964305 MS.gene050647:CDS 70.0%
GGAGAGAGCCGAAGGCTGCC+AGG + chr7.3:964281-964300 MS.gene050647:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 962904 964505 962904 ID=MS.gene050647
chr7.3 mRNA 962904 964505 962904 ID=MS.gene050647.t1;Parent=MS.gene050647
chr7.3 exon 962904 963228 962904 ID=MS.gene050647.t1.exon1;Parent=MS.gene050647.t1
chr7.3 CDS 962904 963228 962904 ID=cds.MS.gene050647.t1;Parent=MS.gene050647.t1
chr7.3 exon 963503 963585 963503 ID=MS.gene050647.t1.exon2;Parent=MS.gene050647.t1
chr7.3 CDS 963503 963585 963503 ID=cds.MS.gene050647.t1;Parent=MS.gene050647.t1
chr7.3 exon 964173 964505 964173 ID=MS.gene050647.t1.exon3;Parent=MS.gene050647.t1
chr7.3 CDS 964173 964505 964173 ID=cds.MS.gene050647.t1;Parent=MS.gene050647.t1
Gene Sequence

>MS.gene050647

ATGGACATCTTGAAGTTCCTATTTCACTTGTTCATATTATTTCCTGTCATATATACCTCAGAGGACTATTGTCAAAATTCTTGGTGCAGTGAAAATAACATCCTTATTCGCTTCCCTTTTCAATTAGAAGTTGATGGTGATCCACTTCCTTATTGTGGCTATCCTGGTTTCAAATTATCTTGTACTAATGATAGCAAAACCGTTCTAACACTTCCTTATTCAGGAGTGTTCTATGTTCGCATAATCAACTATCTCGAACACCACATACAAGTCTATGACCCTCATCGTTGCCTTCCAAATCGTCTTCTAAGTCTCAACCTTTCAGGTTCACCTTTCGTCACCGAATTTCTTACTAACTACACTCTCTTAAGCTGCTCAACTCCGAACATGTTAGGATCACAATTCACACCTGTTGACTGTCTTAGCAACTCTACGCATTTTGTATCAGCTATCCCTTCACTGAGCTTCACCAATTCATTGCCTCAGTCTTGCTACATCATTAGAAATTTTTCAGTTCCAGTTGCAATTTCATATCCGGAATTTTTTTTAAACAACTTCAGTGAAGATCTTGAACTAACATGGTCTTCACCGGATTGTAGATATTGCGAATTACAAGATCGCACGTGCGGATTTGAGAGCAGAAACAACAATCAAGTTCGTTGTTTCTCTAATCAGCAAACAGGTACCTATTGAATTTTTCCACATGTCAACTCATTTGTTTAGTGGTTCATGACATGATATTATTGCATCATTCAATATAAATGTTTTGTCAACTTGCTTGCTTAGTCAAAAACTTGACGATCTAAAAGGTTCATATAATATATTGAATGGAGCTGACATATACGGAAATTTATTGAAAATTTTAAGTCAATGATATGGTATCAGTAACCATAACGGTAACATTTTTATGTGTCCGCGGTGGAGACTTATGCCAGCGAGAGTTCGATGGCCACAGTAAAAGGATTTTAGCATGCTTAAAATTTGACATACATACATGTTTTAGTAATAAACAACTAAAGGCCAAAAACAGGTGACAAACTTTGGTGAATACAACGAGATACATGCAAATTGAAAGTAGAAAGTAACATCAAGCCTTCTTATTCATTGACAGATACTAACGTATTTATTCATAATTACTCAGAAATCAAAACTTTTCCATCTTCAGGTCATTCACAACATAGTCTTATGATTTCTAGAATCATAATATTATCAATTGGGGGAGCAGCTATGATGTTTGCAATTGGGATAGGATGTGTAACATGCTTCAAGCGTAGAAGAAGGACAATATCAGCTGAGCCTTCCATTGACATTACCATTACAAGGATGAGGATGGGTCTGGATGAGTCAACAATTGAGTCTTTTGGGAAGGTTGTGTTAGGAGAGAGCCGAAGGCTGCCAGGAGTGGGACACAATGATGGAACCGGATGTTGCTCAATATGCCTCTCAGAGTACAAAAGTAAGGACATAATTAGATGCATTCCTGAATGCAAACACTGTTTCCATGCTCATTGCATTGATGAATGGCTTCGCATGAACGCTACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCATTCTCTTCTTCATATATCATCATGA

Protein sequence

>MS.gene050647.t1

MDILKFLFHLFILFPVIYTSEDYCQNSWCSENNILIRFPFQLEVDGDPLPYCGYPGFKLSCTNDSKTVLTLPYSGVFYVRIINYLEHHIQVYDPHRCLPNRLLSLNLSDIANYKIARADLRAETTIKFVVSLISKQRRRRTISAEPSIDITITRMRMGLDESTIESFGKVVLGESRRLPGVGHNDGTGCCSICLSEYKSKDIIRCIPECKHCFHAHCIDEWLRMNATCPVCRNSPSPSHSLLHISS