Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50492.t1 | RHN48084.1 | 97 | 725 | 21 | 1 | 1 | 724 | 1 | 725 | 0.00E+00 | 1362.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50492.t1 | F4IE66 | 70.4 | 683 | 202 | 0 | 38 | 720 | 31 | 713 | 1.5e-281 | 969.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50492.t1 | A0A396H8L1 | 97.0 | 725 | 21 | 1 | 1 | 724 | 1 | 725 | 0.0e+00 | 1362.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene50492 | MS.gene023392 | PPI |
MS.gene50492 | MS.gene05323 | PPI |
MS.gene50492 | MS.gene59988 | PPI |
MS.gene50492 | MS.gene08252 | PPI |
MS.gene50492 | MS.gene005495 | PPI |
MS.gene50492 | MS.gene01516 | PPI |
MS.gene50492 | MS.gene20876 | PPI |
MS.gene50492 | MS.gene004211 | PPI |
MS.gene50492 | MS.gene047397 | PPI |
MS.gene50492 | MS.gene002538 | PPI |
MS.gene50492 | MS.gene07327 | PPI |
MS.gene50492 | MS.gene042341 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50492.t1 | MTR_7g095080 | 96.966 | 725 | 21 | 1 | 1 | 724 | 1 | 725 | 0.0 | 1455 |
MS.gene50492.t1 | MTR_4g094992 | 92.664 | 518 | 32 | 1 | 213 | 724 | 2 | 519 | 0.0 | 991 |
MS.gene50492.t1 | MTR_1g023985 | 46.569 | 685 | 308 | 6 | 41 | 724 | 563 | 1190 | 0.0 | 636 |
MS.gene50492.t1 | MTR_1g114490 | 45.877 | 667 | 303 | 6 | 59 | 724 | 512 | 1121 | 0.0 | 612 |
MS.gene50492.t1 | MTR_3g023880 | 44.672 | 685 | 319 | 8 | 43 | 724 | 407 | 1034 | 0.0 | 592 |
MS.gene50492.t1 | MTR_6g061840 | 44.088 | 685 | 322 | 7 | 41 | 720 | 247 | 875 | 0.0 | 580 |
MS.gene50492.t1 | MTR_2g015320 | 40.993 | 705 | 339 | 7 | 41 | 723 | 46 | 695 | 0.0 | 555 |
MS.gene50492.t1 | MTR_1g086640 | 41.250 | 720 | 342 | 11 | 27 | 724 | 33 | 693 | 0.0 | 543 |
MS.gene50492.t1 | MTR_5g075310 | 41.850 | 681 | 296 | 6 | 43 | 720 | 204 | 787 | 0.0 | 543 |
MS.gene50492.t1 | MTR_3g054400 | 40.462 | 692 | 346 | 8 | 39 | 722 | 359 | 992 | 2.31e-178 | 538 |
MS.gene50492.t1 | MTR_2g098440 | 40.260 | 693 | 348 | 8 | 39 | 723 | 562 | 1196 | 1.63e-175 | 536 |
MS.gene50492.t1 | MTR_3g052610 | 40.027 | 742 | 340 | 12 | 27 | 722 | 33 | 715 | 1.89e-175 | 519 |
MS.gene50492.t1 | MTR_6g061840 | 46.060 | 571 | 247 | 7 | 41 | 606 | 247 | 761 | 2.67e-168 | 503 |
MS.gene50492.t1 | MTR_4g485610 | 40.361 | 664 | 322 | 9 | 78 | 724 | 49 | 655 | 2.70e-167 | 497 |
MS.gene50492.t1 | MTR_8g080240 | 38.316 | 689 | 342 | 14 | 47 | 712 | 3 | 631 | 2.71e-155 | 465 |
MS.gene50492.t1 | MTR_8g080240 | 38.517 | 688 | 342 | 14 | 47 | 712 | 3 | 631 | 9.66e-155 | 465 |
MS.gene50492.t1 | MTR_8g080240 | 38.545 | 646 | 318 | 13 | 47 | 673 | 3 | 588 | 9.44e-145 | 436 |
MS.gene50492.t1 | MTR_8g041990 | 35.552 | 661 | 255 | 10 | 43 | 699 | 101 | 594 | 3.61e-124 | 385 |
MS.gene50492.t1 | MTR_6g061840 | 49.344 | 381 | 152 | 1 | 41 | 421 | 247 | 586 | 7.19e-123 | 379 |
MS.gene50492.t1 | MTR_3g086770 | 33.427 | 715 | 368 | 21 | 41 | 717 | 255 | 899 | 1.11e-97 | 331 |
MS.gene50492.t1 | MTR_3g014030 | 32.535 | 710 | 381 | 18 | 41 | 717 | 255 | 899 | 7.88e-97 | 329 |
MS.gene50492.t1 | MTR_0267s0070 | 33.089 | 683 | 361 | 18 | 66 | 717 | 937 | 1554 | 2.40e-92 | 316 |
MS.gene50492.t1 | MTR_1g056490 | 30.801 | 724 | 415 | 17 | 45 | 712 | 228 | 921 | 1.65e-80 | 277 |
MS.gene50492.t1 | MTR_1543s0010 | 41.026 | 312 | 162 | 6 | 327 | 633 | 10 | 304 | 3.16e-69 | 229 |
MS.gene50492.t1 | MTR_4g023590 | 37.195 | 328 | 165 | 8 | 15 | 320 | 227 | 535 | 1.27e-54 | 204 |
MS.gene50492.t1 | MTR_4g023590 | 38.095 | 189 | 115 | 2 | 332 | 519 | 692 | 879 | 2.95e-31 | 132 |
MS.gene50492.t1 | MTR_3g055020 | 41.202 | 233 | 121 | 3 | 385 | 616 | 44 | 261 | 4.85e-53 | 190 |
MS.gene50492.t1 | MTR_1g109170 | 29.724 | 434 | 272 | 11 | 292 | 709 | 601 | 1017 | 5.70e-49 | 186 |
MS.gene50492.t1 | MTR_1g109170 | 34.959 | 246 | 108 | 4 | 35 | 273 | 316 | 516 | 6.74e-32 | 134 |
MS.gene50492.t1 | MTR_1g109170 | 29.724 | 434 | 272 | 11 | 292 | 709 | 601 | 1017 | 6.14e-49 | 186 |
MS.gene50492.t1 | MTR_1g109170 | 34.959 | 246 | 108 | 4 | 35 | 273 | 316 | 516 | 7.73e-32 | 133 |
MS.gene50492.t1 | MTR_8g045110 | 28.637 | 433 | 287 | 7 | 288 | 712 | 105 | 523 | 6.89e-49 | 182 |
MS.gene50492.t1 | MTR_8g106630 | 30.159 | 441 | 270 | 13 | 288 | 709 | 543 | 964 | 1.07e-47 | 182 |
MS.gene50492.t1 | MTR_8g106630 | 35.294 | 238 | 110 | 3 | 35 | 269 | 260 | 456 | 1.99e-34 | 141 |
MS.gene50492.t1 | MTR_1g088590 | 29.735 | 491 | 244 | 15 | 48 | 491 | 30 | 466 | 7.17e-44 | 171 |
MS.gene50492.t1 | MTR_4g134790 | 33.243 | 370 | 216 | 9 | 280 | 630 | 888 | 1245 | 1.70e-42 | 167 |
MS.gene50492.t1 | MTR_4g134790 | 33.096 | 281 | 133 | 6 | 7 | 273 | 562 | 801 | 2.97e-33 | 138 |
MS.gene50492.t1 | MTR_4g134790 | 33.243 | 370 | 216 | 9 | 280 | 630 | 885 | 1242 | 1.84e-42 | 167 |
MS.gene50492.t1 | MTR_4g134790 | 33.096 | 281 | 133 | 6 | 7 | 273 | 562 | 801 | 3.21e-33 | 138 |
MS.gene50492.t1 | MTR_8g044260 | 28.375 | 437 | 283 | 10 | 288 | 709 | 518 | 939 | 3.18e-42 | 166 |
MS.gene50492.t1 | MTR_8g044260 | 31.600 | 250 | 119 | 3 | 27 | 269 | 228 | 432 | 1.06e-30 | 130 |
MS.gene50492.t1 | MTR_5g090430 | 28.241 | 432 | 273 | 12 | 273 | 682 | 526 | 942 | 3.76e-40 | 159 |
MS.gene50492.t1 | MTR_5g090430 | 28.512 | 242 | 118 | 5 | 45 | 273 | 184 | 383 | 2.20e-25 | 113 |
MS.gene50492.t1 | MTR_5g090430 | 28.431 | 408 | 252 | 10 | 273 | 669 | 413 | 791 | 6.02e-40 | 159 |
MS.gene50492.t1 | MTR_5g090430 | 28.512 | 242 | 118 | 5 | 45 | 273 | 71 | 270 | 3.06e-25 | 112 |
MS.gene50492.t1 | MTR_4g120070 | 32.734 | 278 | 129 | 7 | 77 | 320 | 208 | 461 | 1.13e-33 | 139 |
MS.gene50492.t1 | MTR_4g120070 | 37.129 | 202 | 120 | 3 | 324 | 519 | 605 | 805 | 6.08e-32 | 134 |
MS.gene50492.t1 | MTR_3g054420 | 46.552 | 58 | 31 | 0 | 518 | 575 | 2 | 59 | 8.40e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50492.t1 | AT1G26370 | 70.203 | 688 | 203 | 1 | 35 | 720 | 26 | 713 | 0.0 | 1021 |
MS.gene50492.t1 | AT3G26560 | 45.609 | 706 | 326 | 7 | 20 | 724 | 487 | 1135 | 0.0 | 635 |
MS.gene50492.t1 | AT2G35340 | 44.196 | 715 | 337 | 9 | 13 | 724 | 371 | 1026 | 0.0 | 605 |
MS.gene50492.t1 | AT2G35340 | 44.196 | 715 | 337 | 9 | 13 | 724 | 233 | 888 | 0.0 | 604 |
MS.gene50492.t1 | AT1G32490 | 43.636 | 715 | 342 | 9 | 13 | 724 | 370 | 1026 | 0.0 | 602 |
MS.gene50492.t1 | AT1G32490 | 43.636 | 715 | 342 | 9 | 13 | 724 | 360 | 1016 | 0.0 | 601 |
MS.gene50492.t1 | AT4G16680 | 42.616 | 711 | 343 | 8 | 19 | 724 | 106 | 756 | 0.0 | 585 |
MS.gene50492.t1 | AT3G62310 | 42.517 | 715 | 334 | 10 | 30 | 724 | 40 | 697 | 0.0 | 557 |
MS.gene50492.t1 | AT2G47250 | 42.308 | 702 | 331 | 9 | 40 | 724 | 57 | 701 | 0.0 | 553 |
MS.gene50492.t1 | AT4G18465 | 39.800 | 701 | 346 | 6 | 41 | 720 | 41 | 686 | 0.0 | 543 |
MS.gene50492.t1 | AT5G13010 | 40.490 | 694 | 347 | 8 | 39 | 724 | 549 | 1184 | 3.30e-178 | 543 |
MS.gene50492.t1 | AT3G62310 | 45.324 | 556 | 239 | 8 | 30 | 562 | 40 | 553 | 6.71e-152 | 454 |
MS.gene50492.t1 | AT3G62310 | 46.388 | 526 | 224 | 6 | 30 | 539 | 40 | 523 | 7.75e-152 | 452 |
MS.gene50492.t1 | AT1G27900 | 37.085 | 693 | 356 | 14 | 47 | 715 | 3 | 639 | 2.68e-150 | 454 |
MS.gene50492.t1 | AT4G16680 | 48.000 | 475 | 202 | 3 | 19 | 493 | 186 | 615 | 3.73e-150 | 452 |
MS.gene50492.t1 | AT1G27900 | 38.748 | 591 | 297 | 9 | 47 | 628 | 3 | 537 | 7.44e-142 | 427 |
MS.gene50492.t1 | AT1G27900 | 38.748 | 591 | 297 | 9 | 47 | 628 | 3 | 537 | 2.16e-141 | 426 |
MS.gene50492.t1 | AT5G10370 | 32.299 | 709 | 380 | 16 | 48 | 723 | 306 | 947 | 4.67e-97 | 330 |
MS.gene50492.t1 | AT2G35920 | 30.886 | 722 | 417 | 18 | 45 | 712 | 167 | 860 | 7.67e-89 | 299 |
MS.gene50492.t1 | AT4G01020 | 30.650 | 708 | 393 | 17 | 48 | 723 | 303 | 944 | 1.24e-88 | 305 |
MS.gene50492.t1 | AT2G35920 | 30.886 | 722 | 417 | 18 | 45 | 712 | 225 | 918 | 1.54e-88 | 299 |
MS.gene50492.t1 | AT2G35920 | 30.886 | 722 | 417 | 18 | 45 | 712 | 257 | 950 | 2.79e-88 | 299 |
MS.gene50492.t1 | AT1G48650 | 29.759 | 746 | 448 | 19 | 16 | 709 | 267 | 988 | 8.39e-80 | 277 |
MS.gene50492.t1 | AT1G48650 | 29.759 | 746 | 448 | 19 | 16 | 709 | 267 | 988 | 1.03e-79 | 277 |
MS.gene50492.t1 | AT1G58050 | 29.726 | 693 | 382 | 24 | 14 | 636 | 561 | 1218 | 6.11e-70 | 249 |
MS.gene50492.t1 | AT1G33390 | 38.276 | 290 | 137 | 5 | 40 | 312 | 233 | 497 | 3.92e-51 | 193 |
MS.gene50492.t1 | AT1G33390 | 41.294 | 201 | 104 | 3 | 331 | 524 | 646 | 839 | 2.92e-37 | 150 |
MS.gene50492.t1 | AT1G33390 | 38.276 | 290 | 137 | 5 | 40 | 312 | 233 | 497 | 3.92e-51 | 193 |
MS.gene50492.t1 | AT1G33390 | 41.294 | 201 | 104 | 3 | 331 | 524 | 646 | 839 | 2.92e-37 | 150 |
MS.gene50492.t1 | AT2G01130 | 30.233 | 430 | 267 | 9 | 292 | 705 | 427 | 839 | 3.36e-49 | 187 |
MS.gene50492.t1 | AT2G01130 | 34.553 | 246 | 117 | 3 | 27 | 269 | 134 | 338 | 6.97e-35 | 143 |
MS.gene50492.t1 | AT2G01130 | 30.233 | 430 | 267 | 9 | 292 | 705 | 492 | 904 | 3.88e-49 | 187 |
MS.gene50492.t1 | AT2G01130 | 34.553 | 246 | 117 | 3 | 27 | 269 | 199 | 403 | 7.60e-35 | 143 |
MS.gene50492.t1 | AT5G14900 | 34.965 | 286 | 159 | 8 | 448 | 724 | 3 | 270 | 5.97e-49 | 174 |
MS.gene50492.t1 | AT1G58060 | 30.223 | 493 | 267 | 15 | 280 | 707 | 895 | 1375 | 1.32e-45 | 176 |
MS.gene50492.t1 | AT1G58060 | 35.772 | 246 | 108 | 7 | 39 | 273 | 605 | 811 | 3.98e-35 | 144 |
MS.gene50492.t1 | AT1G06670 | 29.040 | 396 | 251 | 9 | 247 | 630 | 524 | 901 | 3.24e-41 | 163 |
MS.gene50492.t1 | AT1G06670 | 32.500 | 240 | 116 | 3 | 39 | 273 | 208 | 406 | 2.15e-31 | 132 |
MS.gene50492.t1 | AT1G06670 | 29.040 | 396 | 251 | 9 | 247 | 630 | 524 | 901 | 3.63e-41 | 163 |
MS.gene50492.t1 | AT1G06670 | 32.500 | 240 | 116 | 3 | 39 | 273 | 208 | 406 | 2.39e-31 | 132 |
MS.gene50492.t1 | AT2G30800 | 27.883 | 477 | 291 | 15 | 274 | 716 | 527 | 984 | 7.99e-40 | 159 |
MS.gene50492.t1 | AT2G30800 | 30.417 | 240 | 121 | 3 | 39 | 273 | 178 | 376 | 1.28e-28 | 123 |
MS.gene50492.t1 | AT5G04895 | 28.276 | 435 | 282 | 11 | 288 | 707 | 529 | 948 | 9.16e-40 | 158 |
MS.gene50492.t1 | AT5G04895 | 30.315 | 254 | 125 | 3 | 27 | 273 | 239 | 447 | 1.62e-31 | 132 |
MS.gene50492.t1 | AT2G30800 | 27.883 | 477 | 291 | 15 | 274 | 716 | 184 | 641 | 1.04e-39 | 157 |
MS.gene50492.t1 | AT2G47680 | 29.505 | 444 | 231 | 11 | 47 | 456 | 25 | 420 | 2.92e-37 | 150 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGTGTTGATGACATATT+AGG | 0.230492 | 7.3:+16058866 | MS.gene50492:CDS |
GCATCTACATAATCTGTTTC+TGG | 0.232424 | 7.3:-16056001 | None:intergenic |
GCCTTTGATCCGGCTCCATC+TGG | 0.237514 | 7.3:+16056501 | MS.gene50492:CDS |
TTCTAAGAAAACTGTCATTC+TGG | 0.285262 | 7.3:-16055829 | None:intergenic |
TTGATTATTGTTGGTGAAAC+TGG | 0.291242 | 7.3:+16054681 | MS.gene50492:CDS |
ATAAGAGCTTTGGCATAAAC+TGG | 0.292906 | 7.3:-16060253 | None:intergenic |
CTTCAAGTTGTGCCTATATA+TGG | 0.314642 | 7.3:+16056450 | MS.gene50492:CDS |
CACAGCTGCATTGAGGAAAA+AGG | 0.328575 | 7.3:-16061023 | None:intergenic |
CTCGCGCGGAAAATAAAATA+TGG | 0.329052 | 7.3:-16060341 | None:intergenic |
CTTTGTTAACTCATGGTGTT+TGG | 0.329626 | 7.3:+16054244 | None:intergenic |
TTATGCACTCTGGTTTCTTC+CGG | 0.338992 | 7.3:-16062514 | None:intergenic |
AGGTTGCAACGCTTAATTTC+CGG | 0.339311 | 7.3:-16058815 | None:intergenic |
TTCATGTTGGATAAAGATAA+TGG | 0.353602 | 7.3:+16055806 | MS.gene50492:CDS |
AAGTCACTTCCTATTGCTTC+GGG | 0.354749 | 7.3:+16054531 | MS.gene50492:CDS |
TCTTTGCAATGCCTGGGACT+TGG | 0.361472 | 7.3:-16057908 | None:intergenic |
GATGGAAGAGCTCCATATAT+AGG | 0.375849 | 7.3:-16056462 | None:intergenic |
TGTTTACAGGGAAGCATTGT+TGG | 0.379684 | 7.3:+16055619 | MS.gene50492:intron |
CCCTTGAACGTGAACAGCTT+TGG | 0.383415 | 7.3:-16055942 | None:intergenic |
TAACAGAGTACCCAACCTTT+TGG | 0.385983 | 7.3:-16055232 | None:intergenic |
TTCTTTACACAACAGGGCTT+TGG | 0.389466 | 7.3:+16062448 | MS.gene50492:intron |
GAGACATCAATTACAATTCC+TGG | 0.391735 | 7.3:+16057796 | MS.gene50492:CDS |
CATACCTTCTTTGCAATGCC+TGG | 0.393486 | 7.3:-16057915 | None:intergenic |
TGTCCACACTGATGTCTTGA+TGG | 0.399891 | 7.3:+16055697 | MS.gene50492:CDS |
AAAGTCACTTCCTATTGCTT+CGG | 0.400688 | 7.3:+16054530 | MS.gene50492:CDS |
CAACCTATGGTTAACTGAAC+TGG | 0.411358 | 7.3:+16062595 | MS.gene50492:CDS |
TGGGTGTTGATGACATATTA+GGG | 0.411725 | 7.3:+16058867 | MS.gene50492:CDS |
TCAAGGACATGTTCAACAAA+TGG | 0.413696 | 7.3:+16060940 | MS.gene50492:CDS |
TCAATTACATACTTGATTCC+AGG | 0.417163 | 7.3:-16057814 | None:intergenic |
AGCAAGTCAGTTTAACTGCT+TGG | 0.419602 | 7.3:+16060279 | MS.gene50492:CDS |
AGAGATTAATTGAAGAGGTT+CGG | 0.420010 | 7.3:+16054646 | MS.gene50492:CDS |
TAGAGCAGCTACTGATTCAT+TGG | 0.426806 | 7.3:+16060708 | MS.gene50492:CDS |
GCCAAAGCTGTTCACGTTCA+AGG | 0.430027 | 7.3:+16055941 | MS.gene50492:CDS |
GACAGCTATTATAAAATCAT+TGG | 0.430046 | 7.3:+16060144 | MS.gene50492:CDS |
CGGGCCATTTGACGTCCAAC+TGG | 0.430443 | 7.3:-16060217 | None:intergenic |
TTGGCGTTGGCATTAGCATT+GGG | 0.434102 | 7.3:-16054313 | None:intergenic |
TAACCAGAGTTGACAACCTA+TGG | 0.434887 | 7.3:+16062582 | MS.gene50492:CDS |
ACTTGCTAAAATAAGAGCTT+TGG | 0.436656 | 7.3:-16060263 | None:intergenic |
ATCCTTCGTCTGTATTGTTC+CGG | 0.437198 | 7.3:+16062495 | MS.gene50492:CDS |
TTTGGTAACAGTGGGCGTGC+AGG | 0.437226 | 7.3:+16058719 | MS.gene50492:intron |
CCTTTGATCCGGCTCCATCT+GGG | 0.438053 | 7.3:+16056502 | MS.gene50492:CDS |
CAACTCACAACCACATTCTT+CGG | 0.438554 | 7.3:-16055207 | None:intergenic |
TGACAAGGTTCTCACCTTGA+AGG | 0.442041 | 7.3:-16058908 | None:intergenic |
TGCCATGACGGAAAAGTTGT+TGG | 0.442723 | 7.3:+16055134 | MS.gene50492:CDS |
ATTGGCGTTGGCATTAGCAT+TGG | 0.442749 | 7.3:-16054314 | None:intergenic |
AAGGACCTGGAAAATGCTTT+CGG | 0.443930 | 7.3:+16058747 | MS.gene50492:CDS |
TTGGTTATTGCGATTGGCGT+TGG | 0.445640 | 7.3:-16054326 | None:intergenic |
AACTGGGTCCAAGGGAAGTC+GGG | 0.447934 | 7.3:-16060236 | None:intergenic |
GACCTGGAAAATTGTTATCA+AGG | 0.449776 | 7.3:-16056026 | None:intergenic |
TATTCTTGTTCTCATTATCA+AGG | 0.450410 | 7.3:-16055775 | None:intergenic |
ATTTCAATACCCGAAGCAAT+AGG | 0.452539 | 7.3:-16054540 | None:intergenic |
CAGGGCTTTGGCAAGTGGTC+AGG | 0.455322 | 7.3:+16062460 | MS.gene50492:intron |
GACATGCTCGTGACATTCAC+AGG | 0.455685 | 7.3:+16060821 | MS.gene50492:CDS |
CGTGCAGGGCGTGAAGGACC+TGG | 0.456345 | 7.3:+16058734 | MS.gene50492:CDS |
GTGAGTTGGGCCAAAAGGTT+GGG | 0.456369 | 7.3:+16055222 | MS.gene50492:CDS |
ATGGGTTTGGTTATTGCGAT+TGG | 0.457755 | 7.3:-16054332 | None:intergenic |
GTAATACCAGGGAGAGGAAT+GGG | 0.458451 | 7.3:-16054350 | None:intergenic |
ATCAAGTATGTAATTGATCC+TGG | 0.458843 | 7.3:+16057820 | MS.gene50492:CDS |
AGTCCCAGGCATTGCAAAGA+AGG | 0.461418 | 7.3:+16057911 | MS.gene50492:CDS |
CGTACTTTCTCTGAGTACTT+TGG | 0.462297 | 7.3:+16055914 | MS.gene50492:CDS |
GCCATGACGGAAAAGTTGTT+GGG | 0.462870 | 7.3:+16055135 | MS.gene50492:CDS |
ACATTCTTCGGCAACTCGCT+TGG | 0.465098 | 7.3:-16055195 | None:intergenic |
GAAGAATGTGGTTGTGAGTT+GGG | 0.470574 | 7.3:+16055209 | MS.gene50492:CDS |
TGATCCAGTTGGACGTCAAA+TGG | 0.470663 | 7.3:+16060213 | MS.gene50492:CDS |
TAACCATAGGTTGTCAACTC+TGG | 0.470971 | 7.3:-16062585 | None:intergenic |
TGCTGTTGAACGGCTTATCA+AGG | 0.477511 | 7.3:+16056392 | MS.gene50492:CDS |
CGAAGAATGTGGTTGTGAGT+TGG | 0.477627 | 7.3:+16055208 | MS.gene50492:CDS |
GCTGCAAAATGACATTAGAA+AGG | 0.479362 | 7.3:-16058835 | None:intergenic |
GATATACTAGTATTTCTGAC+TGG | 0.479761 | 7.3:+16056354 | MS.gene50492:CDS |
AGAGTGATGTGGTCTCCCTC+TGG | 0.480341 | 7.3:-16060673 | None:intergenic |
TCAAATGGCCCGACTTCCCT+TGG | 0.483015 | 7.3:+16060228 | MS.gene50492:CDS |
ACCAGGGAGAGGAATGGGTT+TGG | 0.484017 | 7.3:-16054345 | None:intergenic |
GGCTTTGGCAAGTGGTCAGG+TGG | 0.485781 | 7.3:+16062463 | MS.gene50492:CDS |
CAAGGACATGTTCAACAAAT+GGG | 0.487040 | 7.3:+16060941 | MS.gene50492:CDS |
CGGTCAAATTCTATCAAAGA+TGG | 0.488070 | 7.3:+16055746 | MS.gene50492:CDS |
ATATTTGATCCTTGTTGAGT+TGG | 0.489249 | 7.3:-16055273 | None:intergenic |
AAAGCGCGTTCCTATGATCC+TGG | 0.491588 | 7.3:+16057850 | MS.gene50492:CDS |
TGAGAAGAGATTAATTGAAG+AGG | 0.492285 | 7.3:+16054641 | MS.gene50492:CDS |
GACGATTATAACAGAATACT+TGG | 0.494487 | 7.3:-16055654 | None:intergenic |
TTGGTAACAGTGGGCGTGCA+GGG | 0.495052 | 7.3:+16058720 | MS.gene50492:intron |
CGTTCCTATGATCCTGGAAA+AGG | 0.496489 | 7.3:+16057856 | MS.gene50492:CDS |
ATTTCATTGAGAAACCTTCA+AGG | 0.501014 | 7.3:+16058894 | MS.gene50492:CDS |
TAATTTCGACGAGCCACAAA+AGG | 0.507055 | 7.3:-16054286 | None:intergenic |
ACAGAATACTTGGAAAGATA+AGG | 0.508465 | 7.3:-16055644 | None:intergenic |
GCTCGCGTTTGCTGCTCAGA+TGG | 0.511072 | 7.3:-16056480 | None:intergenic |
TGTGAGTTGGGCCAAAAGGT+TGG | 0.511660 | 7.3:+16055221 | MS.gene50492:CDS |
GCAAACGCGAGCCTTTGATC+CGG | 0.511725 | 7.3:+16056491 | MS.gene50492:CDS |
CGTTGGCATTAGCATTGGGT+TGG | 0.512423 | 7.3:-16054309 | None:intergenic |
GGATACCTGTAGGTTCCATC+TGG | 0.513099 | 7.3:-16061052 | None:intergenic |
ATACCTTCTTTGCAATGCCT+GGG | 0.513868 | 7.3:-16057914 | None:intergenic |
TCGTTAAATATTATGCACTC+TGG | 0.514440 | 7.3:-16062524 | None:intergenic |
ACTTTCTCTGAGTACTTTGG+TGG | 0.515214 | 7.3:+16055917 | MS.gene50492:CDS |
CCCAGATGGAGCCGGATCAA+AGG | 0.518326 | 7.3:-16056502 | None:intergenic |
AGGATCAAATATATGACAGA+TGG | 0.520985 | 7.3:+16055284 | MS.gene50492:CDS |
CACAACAGGGCTTTGGCAAG+TGG | 0.525131 | 7.3:+16062455 | MS.gene50492:intron |
CAAATTCTATCAAAGATGGT+TGG | 0.530800 | 7.3:+16055750 | MS.gene50492:CDS |
ATTGTTGGTGAAACTGGAAG+TGG | 0.530851 | 7.3:+16054687 | MS.gene50492:CDS |
ACCAAACCCATTCCTCTCCC+TGG | 0.534233 | 7.3:+16054344 | MS.gene50492:CDS |
GGTCTGAAACTTGCTTCTTG+TGG | 0.535848 | 7.3:+16060962 | MS.gene50492:CDS |
CCAAAGCTGTTCACGTTCAA+GGG | 0.541798 | 7.3:+16055942 | MS.gene50492:CDS |
GTGATAGCAGCAACACGTCT+AGG | 0.547288 | 7.3:-16055167 | None:intergenic |
ACTTGAGGATTCTACAATGC+CGG | 0.554792 | 7.3:+16058796 | MS.gene50492:CDS |
GAGCCAGTTCAGTTAACCAT+AGG | 0.554841 | 7.3:-16062598 | None:intergenic |
TTGCGAAACCCAGATGGAGC+CGG | 0.557730 | 7.3:-16056510 | None:intergenic |
CGAGTATAAAATATATCCAC+AGG | 0.558690 | 7.3:-16055974 | None:intergenic |
AAACTGGGTCCAAGGGAAGT+CGG | 0.561694 | 7.3:-16060237 | None:intergenic |
AAATGAATTTGAGAAACTTG+AGG | 0.562155 | 7.3:+16058781 | MS.gene50492:CDS |
TGGTTGTGAGTTGGGCCAAA+AGG | 0.566424 | 7.3:+16055217 | MS.gene50492:CDS |
AAGAGCTTCGCAAGTCCAGA+GGG | 0.566562 | 7.3:+16060658 | MS.gene50492:CDS |
GAATACGAATGGTTTCATGT+TGG | 0.567599 | 7.3:+16055793 | MS.gene50492:CDS |
GGCTCCATCTGGGTTTCGCA+AGG | 0.567724 | 7.3:+16056512 | MS.gene50492:CDS |
GACATGATGATTAACTTCAA+CGG | 0.568214 | 7.3:-16055875 | None:intergenic |
AGTGGGCGTGCAGGGCGTGA+AGG | 0.569161 | 7.3:+16058728 | MS.gene50492:intron |
CTATGATCCTGGAAAAGGCA+TGG | 0.570476 | 7.3:+16057861 | MS.gene50492:CDS |
ATATACTAGTATTTCTGACT+GGG | 0.570954 | 7.3:+16056355 | MS.gene50492:CDS |
GGAACAATACAGACGAAGGA+TGG | 0.575517 | 7.3:-16062493 | None:intergenic |
TGACAGATGGGTTACTTCTG+AGG | 0.582783 | 7.3:+16055297 | MS.gene50492:CDS |
AGTAATACCAGGGAGAGGAA+TGG | 0.583151 | 7.3:-16054351 | None:intergenic |
GCAGCTGTGAAGCAGCCAGA+TGG | 0.589847 | 7.3:+16061037 | MS.gene50492:CDS |
AAGAGATTGATGCTGTTGAA+CGG | 0.590120 | 7.3:+16056382 | MS.gene50492:CDS |
GTCCACACTGATGTCTTGAT+GGG | 0.592239 | 7.3:+16055698 | MS.gene50492:CDS |
GGAAAAGTAATACCAGGGAG+AGG | 0.595830 | 7.3:-16054356 | None:intergenic |
AATGAGAACAAGAATACGAA+TGG | 0.596334 | 7.3:+16055782 | MS.gene50492:CDS |
TTGGCATAAACTGGGTCCAA+GGG | 0.596569 | 7.3:-16060244 | None:intergenic |
GGATCAAATATATGACAGAT+GGG | 0.600655 | 7.3:+16055285 | MS.gene50492:CDS |
AAGCGAGTTGCCGAAGAATG+TGG | 0.604736 | 7.3:+16055197 | MS.gene50492:CDS |
GCTGCTTCACAGCTGCATTG+AGG | 0.605522 | 7.3:-16061030 | None:intergenic |
GATACCTTGCGAAACCCAGA+TGG | 0.606659 | 7.3:-16056516 | None:intergenic |
AGCAGCCAGATGGAACCTAC+AGG | 0.608253 | 7.3:+16061047 | MS.gene50492:CDS |
TTTGGCATAAACTGGGTCCA+AGG | 0.609632 | 7.3:-16060245 | None:intergenic |
CACGAGCATGTCTAAGAGAA+CGG | 0.611248 | 7.3:-16060810 | None:intergenic |
TTCCGCAGAAAGCATTGCAA+CGG | 0.612393 | 7.3:-16060317 | None:intergenic |
AGAAATACTAGTATATCACC+AGG | 0.613029 | 7.3:-16056348 | None:intergenic |
AGTACCTACATCCAAGTCCC+AGG | 0.615133 | 7.3:+16057897 | MS.gene50492:CDS |
GTACATCAAGATGAGGCCCC+TGG | 0.615632 | 7.3:+16056330 | MS.gene50492:CDS |
TAAGAGCTTCGCAAGTCCAG+AGG | 0.617178 | 7.3:+16060657 | MS.gene50492:CDS |
AGCCGTTGCAATGCTTTCTG+CGG | 0.618592 | 7.3:+16060315 | MS.gene50492:CDS |
ACCTCTTCGTACTTCTCGCG+CGG | 0.625786 | 7.3:-16060355 | None:intergenic |
TCCGCGCGAGAAGTACGAAG+AGG | 0.633803 | 7.3:+16060354 | MS.gene50492:CDS |
ATTCTACTTCCAACTCAACA+AGG | 0.634787 | 7.3:+16055264 | MS.gene50492:CDS |
TGTCAACTATCTGATCCAGT+TGG | 0.635262 | 7.3:+16060202 | MS.gene50492:CDS |
AATGCCTGGGACTTGGATGT+AGG | 0.635279 | 7.3:-16057901 | None:intergenic |
GTTATAGGTACATCAAGATG+AGG | 0.635310 | 7.3:+16056323 | MS.gene50492:intron |
TAAGAGCTTTGGCATAAACT+GGG | 0.636597 | 7.3:-16060252 | None:intergenic |
TGTCAACTCTGGTTAAATCA+CGG | 0.646694 | 7.3:-16062574 | None:intergenic |
TTCCGGAACAATACAGACGA+AGG | 0.647037 | 7.3:-16062497 | None:intergenic |
ACACATTAATCAGAGTGATG+TGG | 0.651588 | 7.3:-16060684 | None:intergenic |
TCAAGGGAGACAGTTTCCTG+TGG | 0.671336 | 7.3:+16055958 | MS.gene50492:CDS |
GAAATACTAGTATATCACCA+GGG | 0.680918 | 7.3:-16056347 | None:intergenic |
TTCTGCATAGCGTAAAACTG+AGG | 0.692959 | 7.3:-16062620 | None:intergenic |
AAATACTAGTATATCACCAG+GGG | 0.695525 | 7.3:-16056346 | None:intergenic |
AGCCCATCAAGACATCAGTG+TGG | 0.744619 | 7.3:-16055700 | None:intergenic |
ACGTGTTGCTGCTATCACTG+TGG | 0.765431 | 7.3:+16055172 | MS.gene50492:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 16054256 | 16062646 | 16054256 | ID=MS.gene50492 |
chr7.3 | mRNA | 16054256 | 16062646 | 16054256 | ID=MS.gene50492.t1;Parent=MS.gene50492 |
chr7.3 | exon | 16054256 | 16054365 | 16054256 | ID=MS.gene50492.t1.exon1;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16054256 | 16054365 | 16054256 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16054506 | 16054552 | 16054506 | ID=MS.gene50492.t1.exon2;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16054506 | 16054552 | 16054506 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16054640 | 16054720 | 16054640 | ID=MS.gene50492.t1.exon3;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16054640 | 16054720 | 16054640 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16055102 | 16055318 | 16055102 | ID=MS.gene50492.t1.exon4;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16055102 | 16055318 | 16055102 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16055628 | 16056045 | 16055628 | ID=MS.gene50492.t1.exon5;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16055628 | 16056045 | 16055628 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16056330 | 16056533 | 16056330 | ID=MS.gene50492.t1.exon6;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16056330 | 16056533 | 16056330 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16057772 | 16057932 | 16057772 | ID=MS.gene50492.t1.exon7;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16057772 | 16057932 | 16057772 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16058730 | 16058915 | 16058730 | ID=MS.gene50492.t1.exon8;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16058730 | 16058915 | 16058730 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16060144 | 16060375 | 16060144 | ID=MS.gene50492.t1.exon9;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16060144 | 16060375 | 16060144 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16060643 | 16060842 | 16060643 | ID=MS.gene50492.t1.exon10;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16060643 | 16060842 | 16060643 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16060934 | 16061068 | 16060934 | ID=MS.gene50492.t1.exon11;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16060934 | 16061068 | 16060934 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
chr7.3 | exon | 16062463 | 16062646 | 16062463 | ID=MS.gene50492.t1.exon12;Parent=MS.gene50492.t1 |
chr7.3 | CDS | 16062463 | 16062646 | 16062463 | ID=cds.MS.gene50492.t1;Parent=MS.gene50492.t1 |
Gene Sequence |
Protein sequence |