Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004211.t1 | XP_003593709.1 | 97.6 | 701 | 16 | 1 | 1 | 700 | 1 | 701 | 0.00E+00 | 1299.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004211.t1 | F4JRJ6 | 74.7 | 692 | 171 | 3 | 4 | 695 | 3 | 690 | 1.4e-300 | 1033.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004211.t1 | G7IK78 | 97.6 | 701 | 16 | 1 | 1 | 700 | 1 | 701 | 0.0e+00 | 1299.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene004211 | MS.gene07327 | PPI |
MS.gene004211 | MS.gene77305 | PPI |
MS.gene036929 | MS.gene004211 | PPI |
MS.gene004211 | MS.gene048625 | PPI |
MS.gene004211 | MS.gene042341 | PPI |
MS.gene004211 | MS.gene071065 | PPI |
MS.gene004211 | MS.gene023392 | PPI |
MS.gene004211 | MS.gene05323 | PPI |
MS.gene004211 | MS.gene87672 | PPI |
MS.gene004211 | MS.gene59988 | PPI |
MS.gene004211 | MS.gene08252 | PPI |
MS.gene004211 | MS.gene98782 | PPI |
MS.gene004211 | MS.gene005495 | PPI |
MS.gene004211 | MS.gene78458 | PPI |
MS.gene004211 | MS.gene20876 | PPI |
MS.gene004211 | MS.gene27517 | PPI |
MS.gene50492 | MS.gene004211 | PPI |
MS.gene004211 | MS.gene92776 | PPI |
MS.gene004211 | MS.gene018109 | PPI |
MS.gene004211 | MS.gene40397 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004211.t1 | MTR_2g015320 | 98.003 | 701 | 13 | 1 | 1 | 700 | 1 | 701 | 0.0 | 1420 |
MS.gene004211.t1 | MTR_1g023985 | 48.012 | 654 | 317 | 5 | 44 | 697 | 562 | 1192 | 0.0 | 635 |
MS.gene004211.t1 | MTR_1g114490 | 48.504 | 635 | 304 | 5 | 65 | 699 | 514 | 1125 | 0.0 | 623 |
MS.gene004211.t1 | MTR_3g023880 | 45.536 | 672 | 331 | 9 | 30 | 694 | 390 | 1033 | 0.0 | 603 |
MS.gene004211.t1 | MTR_6g061840 | 46.012 | 652 | 326 | 7 | 44 | 691 | 246 | 875 | 0.0 | 600 |
MS.gene004211.t1 | MTR_1g086640 | 45.821 | 670 | 320 | 10 | 42 | 693 | 47 | 691 | 0.0 | 593 |
MS.gene004211.t1 | MTR_3g052610 | 43.391 | 696 | 326 | 11 | 42 | 693 | 44 | 715 | 0.0 | 569 |
MS.gene004211.t1 | MTR_5g075310 | 42.081 | 663 | 319 | 6 | 31 | 691 | 188 | 787 | 0.0 | 561 |
MS.gene004211.t1 | MTR_7g095080 | 41.218 | 706 | 337 | 8 | 45 | 694 | 41 | 724 | 0.0 | 558 |
MS.gene004211.t1 | MTR_4g485610 | 45.223 | 628 | 305 | 9 | 82 | 693 | 49 | 653 | 0.0 | 546 |
MS.gene004211.t1 | MTR_3g054400 | 40.758 | 660 | 362 | 7 | 44 | 697 | 360 | 996 | 0.0 | 546 |
MS.gene004211.t1 | MTR_2g098440 | 39.745 | 707 | 386 | 9 | 8 | 697 | 516 | 1199 | 2.24e-180 | 548 |
MS.gene004211.t1 | MTR_6g061840 | 47.664 | 535 | 257 | 6 | 44 | 574 | 246 | 761 | 3.13e-171 | 509 |
MS.gene004211.t1 | MTR_8g080240 | 39.371 | 668 | 356 | 15 | 52 | 698 | 4 | 643 | 1.34e-154 | 462 |
MS.gene004211.t1 | MTR_8g080240 | 39.371 | 668 | 356 | 15 | 52 | 698 | 4 | 643 | 3.38e-154 | 463 |
MS.gene004211.t1 | MTR_8g080240 | 41.953 | 553 | 291 | 8 | 52 | 597 | 4 | 533 | 3.71e-145 | 436 |
MS.gene004211.t1 | MTR_4g094992 | 38.783 | 526 | 281 | 6 | 189 | 694 | 14 | 518 | 5.50e-130 | 395 |
MS.gene004211.t1 | MTR_8g041990 | 34.112 | 642 | 285 | 10 | 35 | 672 | 89 | 596 | 4.67e-124 | 384 |
MS.gene004211.t1 | MTR_6g061840 | 49.025 | 359 | 165 | 2 | 44 | 402 | 246 | 586 | 9.22e-116 | 360 |
MS.gene004211.t1 | MTR_3g014030 | 33.819 | 686 | 371 | 16 | 45 | 688 | 255 | 899 | 7.19e-99 | 334 |
MS.gene004211.t1 | MTR_1g109170 | 31.542 | 707 | 402 | 18 | 49 | 684 | 326 | 1021 | 8.35e-98 | 327 |
MS.gene004211.t1 | MTR_1g109170 | 31.542 | 707 | 402 | 18 | 49 | 684 | 326 | 1021 | 1.07e-97 | 327 |
MS.gene004211.t1 | MTR_3g086770 | 32.771 | 711 | 408 | 17 | 21 | 699 | 231 | 903 | 1.63e-97 | 330 |
MS.gene004211.t1 | MTR_1g056490 | 31.721 | 703 | 405 | 15 | 49 | 684 | 228 | 922 | 6.81e-92 | 307 |
MS.gene004211.t1 | MTR_0267s0070 | 33.739 | 658 | 355 | 16 | 71 | 688 | 938 | 1554 | 1.28e-91 | 313 |
MS.gene004211.t1 | MTR_8g106630 | 29.844 | 707 | 417 | 17 | 49 | 684 | 270 | 968 | 2.73e-90 | 306 |
MS.gene004211.t1 | MTR_1543s0010 | 41.319 | 288 | 165 | 2 | 303 | 590 | 5 | 288 | 3.28e-70 | 231 |
MS.gene004211.t1 | MTR_3g055020 | 38.645 | 251 | 148 | 3 | 349 | 597 | 25 | 271 | 2.14e-52 | 187 |
MS.gene004211.t1 | MTR_8g045110 | 30.166 | 421 | 260 | 12 | 273 | 674 | 109 | 514 | 6.21e-52 | 191 |
MS.gene004211.t1 | MTR_4g134790 | 29.106 | 481 | 271 | 11 | 270 | 684 | 896 | 1372 | 2.91e-49 | 187 |
MS.gene004211.t1 | MTR_4g134790 | 36.612 | 183 | 101 | 5 | 49 | 218 | 602 | 782 | 5.83e-25 | 111 |
MS.gene004211.t1 | MTR_4g134790 | 29.106 | 481 | 271 | 11 | 270 | 684 | 899 | 1375 | 3.03e-49 | 187 |
MS.gene004211.t1 | MTR_4g134790 | 36.612 | 183 | 101 | 5 | 49 | 218 | 602 | 782 | 5.74e-25 | 111 |
MS.gene004211.t1 | MTR_4g023590 | 36.396 | 283 | 136 | 6 | 40 | 293 | 260 | 527 | 7.03e-47 | 180 |
MS.gene004211.t1 | MTR_4g023590 | 40.909 | 198 | 115 | 2 | 306 | 502 | 684 | 880 | 1.20e-30 | 129 |
MS.gene004211.t1 | MTR_1g088590 | 30.837 | 454 | 269 | 13 | 51 | 474 | 29 | 467 | 1.11e-46 | 179 |
MS.gene004211.t1 | MTR_5g090430 | 30.825 | 412 | 256 | 12 | 280 | 669 | 554 | 958 | 1.53e-43 | 169 |
MS.gene004211.t1 | MTR_5g090430 | 37.363 | 182 | 101 | 4 | 49 | 218 | 184 | 364 | 1.11e-31 | 132 |
MS.gene004211.t1 | MTR_5g090430 | 30.508 | 413 | 256 | 12 | 280 | 669 | 441 | 845 | 1.77e-43 | 169 |
MS.gene004211.t1 | MTR_5g090430 | 37.363 | 182 | 101 | 4 | 49 | 218 | 71 | 251 | 1.30e-31 | 132 |
MS.gene004211.t1 | MTR_8g044260 | 27.570 | 428 | 288 | 10 | 273 | 684 | 522 | 943 | 1.77e-41 | 163 |
MS.gene004211.t1 | MTR_8g044260 | 41.040 | 173 | 98 | 3 | 49 | 218 | 246 | 417 | 1.97e-29 | 125 |
MS.gene004211.t1 | MTR_4g120070 | 41.117 | 197 | 114 | 2 | 306 | 501 | 610 | 805 | 8.58e-31 | 130 |
MS.gene004211.t1 | MTR_4g120070 | 29.630 | 297 | 124 | 9 | 53 | 293 | 186 | 453 | 5.14e-27 | 118 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004211.t1 | AT4G18465 | 76.445 | 692 | 159 | 3 | 4 | 695 | 3 | 690 | 0.0 | 1110 |
MS.gene004211.t1 | AT1G32490 | 46.605 | 648 | 321 | 7 | 49 | 694 | 401 | 1025 | 0.0 | 632 |
MS.gene004211.t1 | AT1G32490 | 46.605 | 648 | 321 | 7 | 49 | 694 | 391 | 1015 | 0.0 | 632 |
MS.gene004211.t1 | AT2G35340 | 46.027 | 667 | 335 | 7 | 30 | 694 | 382 | 1025 | 0.0 | 629 |
MS.gene004211.t1 | AT2G35340 | 46.027 | 667 | 335 | 7 | 30 | 694 | 244 | 887 | 0.0 | 627 |
MS.gene004211.t1 | AT3G26560 | 47.095 | 654 | 323 | 5 | 44 | 697 | 507 | 1137 | 0.0 | 625 |
MS.gene004211.t1 | AT3G62310 | 46.370 | 675 | 318 | 10 | 42 | 697 | 51 | 700 | 0.0 | 605 |
MS.gene004211.t1 | AT2G47250 | 45.926 | 675 | 321 | 11 | 42 | 697 | 55 | 704 | 0.0 | 599 |
MS.gene004211.t1 | AT4G16680 | 43.840 | 698 | 351 | 11 | 11 | 694 | 85 | 755 | 0.0 | 594 |
MS.gene004211.t1 | AT1G26370 | 41.821 | 703 | 332 | 8 | 45 | 692 | 34 | 714 | 0.0 | 550 |
MS.gene004211.t1 | AT5G13010 | 40.303 | 660 | 365 | 7 | 44 | 697 | 550 | 1186 | 5.86e-178 | 541 |
MS.gene004211.t1 | AT3G62310 | 48.780 | 492 | 221 | 5 | 42 | 521 | 51 | 523 | 7.09e-159 | 470 |
MS.gene004211.t1 | AT3G62310 | 48.676 | 491 | 221 | 5 | 42 | 520 | 51 | 522 | 1.73e-157 | 467 |
MS.gene004211.t1 | AT1G27900 | 38.060 | 670 | 367 | 14 | 52 | 698 | 4 | 648 | 5.12e-147 | 445 |
MS.gene004211.t1 | AT4G16680 | 46.058 | 482 | 228 | 6 | 11 | 483 | 165 | 623 | 1.72e-139 | 424 |
MS.gene004211.t1 | AT1G27900 | 39.711 | 554 | 305 | 8 | 52 | 596 | 4 | 537 | 3.44e-136 | 411 |
MS.gene004211.t1 | AT1G27900 | 39.711 | 554 | 305 | 8 | 52 | 596 | 4 | 537 | 4.71e-136 | 412 |
MS.gene004211.t1 | AT2G35920 | 32.575 | 703 | 399 | 15 | 49 | 684 | 167 | 861 | 1.14e-104 | 341 |
MS.gene004211.t1 | AT2G35920 | 32.575 | 703 | 399 | 15 | 49 | 684 | 225 | 919 | 5.16e-104 | 340 |
MS.gene004211.t1 | AT2G35920 | 32.575 | 703 | 399 | 15 | 49 | 684 | 257 | 951 | 7.22e-104 | 340 |
MS.gene004211.t1 | AT2G01130 | 30.042 | 719 | 420 | 18 | 40 | 684 | 138 | 847 | 9.03e-93 | 311 |
MS.gene004211.t1 | AT2G01130 | 30.042 | 719 | 420 | 18 | 40 | 684 | 203 | 912 | 2.51e-92 | 311 |
MS.gene004211.t1 | AT5G10370 | 33.284 | 670 | 384 | 18 | 52 | 690 | 306 | 943 | 1.02e-91 | 313 |
MS.gene004211.t1 | AT4G01020 | 32.985 | 670 | 386 | 18 | 52 | 690 | 303 | 940 | 1.52e-90 | 310 |
MS.gene004211.t1 | AT1G48650 | 31.356 | 708 | 403 | 18 | 49 | 684 | 296 | 992 | 4.65e-87 | 297 |
MS.gene004211.t1 | AT1G48650 | 31.356 | 708 | 403 | 18 | 49 | 684 | 296 | 992 | 4.70e-87 | 297 |
MS.gene004211.t1 | AT1G58050 | 31.473 | 645 | 344 | 22 | 42 | 599 | 587 | 1220 | 8.60e-75 | 263 |
MS.gene004211.t1 | AT5G14900 | 42.701 | 274 | 141 | 7 | 429 | 693 | 2 | 268 | 2.96e-67 | 223 |
MS.gene004211.t1 | AT1G58060 | 30.081 | 492 | 273 | 13 | 260 | 684 | 894 | 1381 | 1.89e-51 | 194 |
MS.gene004211.t1 | AT1G58060 | 38.220 | 191 | 102 | 6 | 42 | 218 | 604 | 792 | 3.11e-27 | 119 |
MS.gene004211.t1 | AT1G33390 | 36.755 | 302 | 141 | 8 | 43 | 315 | 232 | 512 | 8.98e-46 | 176 |
MS.gene004211.t1 | AT1G33390 | 27.451 | 459 | 263 | 8 | 304 | 696 | 637 | 1091 | 3.07e-38 | 153 |
MS.gene004211.t1 | AT1G33390 | 36.755 | 302 | 141 | 8 | 43 | 315 | 232 | 512 | 8.98e-46 | 176 |
MS.gene004211.t1 | AT1G33390 | 27.451 | 459 | 263 | 8 | 304 | 696 | 637 | 1091 | 3.07e-38 | 153 |
MS.gene004211.t1 | AT5G04895 | 29.907 | 428 | 278 | 11 | 273 | 684 | 533 | 954 | 3.00e-41 | 162 |
MS.gene004211.t1 | AT5G04895 | 40.462 | 173 | 99 | 3 | 49 | 218 | 257 | 428 | 1.76e-33 | 138 |
MS.gene004211.t1 | AT2G47680 | 30.266 | 489 | 291 | 16 | 52 | 507 | 26 | 497 | 5.17e-41 | 161 |
MS.gene004211.t1 | AT1G06670 | 29.539 | 369 | 235 | 9 | 280 | 629 | 576 | 938 | 7.16e-41 | 161 |
MS.gene004211.t1 | AT1G06670 | 37.363 | 182 | 108 | 3 | 42 | 218 | 207 | 387 | 3.08e-32 | 135 |
MS.gene004211.t1 | AT1G06670 | 29.539 | 369 | 235 | 9 | 280 | 629 | 576 | 938 | 1.01e-40 | 161 |
MS.gene004211.t1 | AT1G06670 | 37.363 | 182 | 108 | 3 | 42 | 218 | 207 | 387 | 3.61e-32 | 134 |
MS.gene004211.t1 | AT2G30800 | 28.962 | 366 | 237 | 9 | 280 | 627 | 209 | 569 | 4.34e-40 | 159 |
MS.gene004211.t1 | AT2G30800 | 28.962 | 366 | 237 | 9 | 280 | 627 | 552 | 912 | 1.26e-39 | 157 |
MS.gene004211.t1 | AT2G30800 | 36.598 | 194 | 117 | 3 | 30 | 218 | 165 | 357 | 4.91e-33 | 137 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTATGCATACAGTCTATT+TGG | 0.136281 | 2.4:-69707794 | MS.gene004211:intron |
CTGTTCAGGCTGTTTCTTCT+AGG | 0.204165 | 2.4:-69716366 | MS.gene004211:CDS |
TCTTCTTCTTCCTCCGGATA+TGG | 0.237865 | 2.4:-69716681 | MS.gene004211:CDS |
AGTTGAGAATGGCGCAATTC+TGG | 0.261132 | 2.4:-69716788 | None:intergenic |
TGGTTGTGGCTCCAATTTCT+AGG | 0.265548 | 2.4:-69710464 | MS.gene004211:CDS |
GCTTCGGGTTTCTCTGTTCC+TGG | 0.271519 | 2.4:+69716762 | None:intergenic |
TTTGGGGATCGATAATATAT+TGG | 0.272408 | 2.4:-69708984 | MS.gene004211:CDS |
CTTGCTTGGACTATTGAAAA+AGG | 0.289636 | 2.4:-69715392 | MS.gene004211:intron |
TCTCTACTCCCTTGGGATCT+TGG | 0.291941 | 2.4:-69708906 | MS.gene004211:CDS |
ATCAAGTTGGTTATACTATT+AGG | 0.292995 | 2.4:-69716312 | MS.gene004211:CDS |
GATTTCCAGTTAAAGGCTTT+GGG | 0.306358 | 2.4:-69709001 | MS.gene004211:intron |
CTAGCAGAAGCCCTAGAAAT+TGG | 0.312284 | 2.4:+69710453 | None:intergenic |
GATGTGCTTGTATTCCTTAC+TGG | 0.316329 | 2.4:-69711771 | MS.gene004211:CDS |
TGATTTCCAGTTAAAGGCTT+TGG | 0.330501 | 2.4:-69709002 | MS.gene004211:intron |
GATCTCTGATATTGAAAATC+TGG | 0.337569 | 2.4:-69710484 | MS.gene004211:CDS |
ACTATCATTGTCGGCGAAAC+CGG | 0.359000 | 2.4:-69716570 | MS.gene004211:CDS |
TCGTCAACTACCTGTGCTTC+GGG | 0.361670 | 2.4:+69716747 | None:intergenic |
TTGGGGATCGATAATATATT+GGG | 0.361787 | 2.4:-69708983 | MS.gene004211:CDS |
GTCGTCAACTACCTGTGCTT+CGG | 0.365035 | 2.4:+69716746 | None:intergenic |
ACCAAGACGACTCGCTGTTC+AGG | 0.375838 | 2.4:-69716380 | MS.gene004211:CDS |
CCGCAACGCCATTCTCTACT+TGG | 0.380130 | 2.4:-69716610 | MS.gene004211:CDS |
ACCCTTCATCGGTGCTATTC+AGG | 0.380359 | 2.4:-69706726 | MS.gene004211:intron |
AATAGATCCCTCATGGCTAT+TGG | 0.386520 | 2.4:-69706385 | MS.gene004211:CDS |
TGGAAGTTCTCTACTCCCTT+GGG | 0.390548 | 2.4:-69708913 | MS.gene004211:CDS |
TTGGAAGTTCTCTACTCCCT+TGG | 0.391288 | 2.4:-69708914 | MS.gene004211:CDS |
GTGTTGTTACAGTGTTATAA+TGG | 0.393810 | 2.4:-69715452 | MS.gene004211:intron |
ACCTCGACTGATAAGATTGC+AGG | 0.395827 | 2.4:+69712981 | None:intergenic |
ATTGAGGCTGGTTGGGCTGC+CGG | 0.396172 | 2.4:-69716427 | MS.gene004211:CDS |
ACTAATCGAAAGCACTCTTC+AGG | 0.396484 | 2.4:-69711699 | MS.gene004211:intron |
TTCCTCTTTCCTCTAGGAGT+TGG | 0.396820 | 2.4:+69711307 | None:intergenic |
AAGCAAGATGTCAGTTGAAA+TGG | 0.399094 | 2.4:+69715408 | None:intergenic |
ATACAGTCTATTTGGATCTC+AGG | 0.400650 | 2.4:-69707786 | MS.gene004211:intron |
TTCGACCAGGAAAATGTTAC+AGG | 0.403679 | 2.4:-69710404 | MS.gene004211:intron |
TGAAGCAATGATCCGAGCTT+TGG | 0.413230 | 2.4:-69708933 | MS.gene004211:CDS |
GTATCTGATTGAGGCTGGTT+GGG | 0.414430 | 2.4:-69716434 | MS.gene004211:CDS |
ATTTCAACTGACATCTTGCT+TGG | 0.417097 | 2.4:-69715406 | MS.gene004211:CDS |
CAAGTGGAATTTCTGCAACT+TGG | 0.419675 | 2.4:+69708849 | None:intergenic |
GTTAAGAAAGCAGTTATTGC+TGG | 0.420014 | 2.4:-69706964 | MS.gene004211:CDS |
CACGTTTCTTAATGTATACA+AGG | 0.420532 | 2.4:-69707464 | MS.gene004211:CDS |
TTGGCGTTGTTTATCGATGC+TGG | 0.431047 | 2.4:+69716653 | None:intergenic |
ATAATATATTGGGCTTTGAC+TGG | 0.433236 | 2.4:-69708973 | MS.gene004211:CDS |
TACATCCCATCAGGACTGTA+TGG | 0.438368 | 2.4:+69706784 | None:intergenic |
AGATTTGATCTCTGTATCTC+TGG | 0.439451 | 2.4:+69709597 | None:intergenic |
TCATATCAATGAAGAAGATT+AGG | 0.443820 | 2.4:+69706330 | None:intergenic |
GCCAAGCTTACTTCACCAAC+TGG | 0.448080 | 2.4:-69708875 | MS.gene004211:CDS |
GCCTGAACAGCGAGTCGTCT+TGG | 0.453470 | 2.4:+69716379 | None:intergenic |
AACAGAGAAACCCGAAGCAC+AGG | 0.453867 | 2.4:-69716757 | MS.gene004211:CDS |
CGGATCATTGCTTCAGGTGA+TGG | 0.454095 | 2.4:+69708941 | None:intergenic |
CTCTGAACATCCAAGTTGGC+TGG | 0.462620 | 2.4:+69708009 | None:intergenic |
GGTTGTGGCTCCAATTTCTA+GGG | 0.463394 | 2.4:-69710463 | MS.gene004211:CDS |
TGTTCAGGCTGTTTCTTCTA+GGG | 0.465073 | 2.4:-69716365 | MS.gene004211:CDS |
TTCTAGGGTTGCTCAAGAGA+TGG | 0.466640 | 2.4:-69716350 | MS.gene004211:CDS |
GAATTGAAAATAACCCACTT+TGG | 0.468850 | 2.4:+69706450 | None:intergenic |
AGACAAAGAGCTGGTAGGGC+TGG | 0.476988 | 2.4:-69710432 | MS.gene004211:CDS |
GTTAAACTTGGTGATCAAGT+TGG | 0.477413 | 2.4:-69716325 | MS.gene004211:CDS |
AGTATCTGATTGAGGCTGGT+TGG | 0.479870 | 2.4:-69716435 | MS.gene004211:CDS |
AAAGCTCGGATCATTGCTTC+AGG | 0.483536 | 2.4:+69708935 | None:intergenic |
TCTTAACCACATGTCTAATG+AGG | 0.484691 | 2.4:-69709625 | MS.gene004211:CDS |
GGGATGTACAAAACGTTAAG+AGG | 0.485113 | 2.4:-69706769 | MS.gene004211:CDS |
CTCCAACTCCTAGAGGAAAG+AGG | 0.486444 | 2.4:-69711309 | MS.gene004211:CDS |
TCTTGTCTCCTGTGTAATCC+AGG | 0.491145 | 2.4:-69709577 | MS.gene004211:intron |
ACTACTTTCCTCTTTCCTCT+AGG | 0.492137 | 2.4:+69711301 | None:intergenic |
CAAGAGATGGGAGTTAAACT+TGG | 0.492826 | 2.4:-69716337 | MS.gene004211:CDS |
TACTATTGAAGCAAAATCAA+TGG | 0.493274 | 2.4:-69715219 | MS.gene004211:CDS |
TCTAGGGTTGCTCAAGAGAT+GGG | 0.493990 | 2.4:-69716349 | MS.gene004211:CDS |
GGTTTCGCCGACAATGATAG+TGG | 0.498964 | 2.4:+69716572 | None:intergenic |
TGGCTGATTTCTTCCGCCCA+AGG | 0.500876 | 2.4:-69715199 | MS.gene004211:intron |
CTCTCTTAATAGGAAACCAC+TGG | 0.504086 | 2.4:-69711795 | MS.gene004211:intron |
TTACCGATGGGGTGCTCCTG+AGG | 0.504557 | 2.4:-69715614 | MS.gene004211:CDS |
TGCTAGACAAAGAGCTGGTA+GGG | 0.508207 | 2.4:-69710436 | MS.gene004211:CDS |
TCCAGTTGGTGAAGTAAGCT+TGG | 0.508830 | 2.4:+69708874 | None:intergenic |
CATTCCACCACTATCATTGT+CGG | 0.508919 | 2.4:-69716579 | MS.gene004211:CDS |
GCAATAATCAAACGCAACTC+TGG | 0.510658 | 2.4:+69715248 | None:intergenic |
ATAATAGCGTCCAGCCAACT+TGG | 0.512838 | 2.4:-69708019 | MS.gene004211:CDS |
CGATATCATCTTGACCAGTA+AGG | 0.513614 | 2.4:+69711757 | None:intergenic |
AGGGCTCCCACGTGCTGACC+AGG | 0.515295 | 2.4:-69711451 | MS.gene004211:intron |
ATCTTGCGAAAGTGATATGC+AGG | 0.516796 | 2.4:-69707207 | MS.gene004211:intron |
GCGTTGCGGTATTTGTAGAC+AGG | 0.517253 | 2.4:+69716624 | None:intergenic |
ATGGCGCAATTCTGGAAGCC+AGG | 0.517729 | 2.4:-69716780 | MS.gene004211:CDS |
CTGCTAGACAAAGAGCTGGT+AGG | 0.518625 | 2.4:-69710437 | MS.gene004211:CDS |
TAAAAGCCATACAGTCCTGA+TGG | 0.520580 | 2.4:-69706790 | MS.gene004211:intron |
TACCTGAATAGCACCGATGA+AGG | 0.520912 | 2.4:+69706724 | None:intergenic |
CAGCAGCCTGAACATAGTCT+TGG | 0.521541 | 2.4:+69712478 | None:intergenic |
GATGCTGGCGTAGCCATATC+CGG | 0.522367 | 2.4:+69716668 | None:intergenic |
GCCTGAACATAGTCTTGGAC+AGG | 0.522736 | 2.4:+69712483 | None:intergenic |
GAAGGCAAATTACCCGCTCA+TGG | 0.523634 | 2.4:+69712436 | None:intergenic |
CTTAACCACATGTCTAATGA+GGG | 0.524180 | 2.4:-69709624 | MS.gene004211:CDS |
ACCTGTCCAAGACTATGTTC+AGG | 0.533597 | 2.4:-69712484 | MS.gene004211:CDS |
ATTGTCTATGTTGTTGACAG+TGG | 0.536673 | 2.4:-69711151 | MS.gene004211:CDS |
TTGCAGTATCTGATTGAGGC+TGG | 0.538890 | 2.4:-69716439 | MS.gene004211:intron |
TACAGTCTATTTGGATCTCA+GGG | 0.545479 | 2.4:-69707785 | MS.gene004211:intron |
AGATCCCTCATGGCTATTGG+AGG | 0.547377 | 2.4:-69706382 | MS.gene004211:CDS |
AGAAGAATTGCACAGAGGAT+AGG | 0.551527 | 2.4:-69707242 | MS.gene004211:CDS |
TGCATTGCAGTATCTGATTG+AGG | 0.552532 | 2.4:-69716443 | MS.gene004211:intron |
TACCGATGGGGTGCTCCTGA+GGG | 0.552778 | 2.4:-69715613 | MS.gene004211:CDS |
AAAACAGCGGTTCTACAATC+CGG | 0.553766 | 2.4:-69711122 | MS.gene004211:intron |
CAGGTAGTTGACGACGAAGA+AGG | 0.554742 | 2.4:-69716738 | MS.gene004211:CDS |
TGATATTGAAAATCTGGTTG+TGG | 0.556104 | 2.4:-69710478 | MS.gene004211:CDS |
GAGGCTGGTTGGGCTGCCGG+TGG | 0.563350 | 2.4:-69716424 | MS.gene004211:CDS |
CTCCCTCAGGAGCACCCCAT+CGG | 0.563660 | 2.4:+69715611 | None:intergenic |
TTGTTACAGTGTTATAATGG+TGG | 0.565300 | 2.4:-69715449 | MS.gene004211:intron |
GCGGCGAGAACCTGAAAATG+AGG | 0.570614 | 2.4:-69713024 | MS.gene004211:CDS |
GAACCTGAAAATGAGGCGAA+TGG | 0.571890 | 2.4:-69713017 | MS.gene004211:CDS |
AGTTTCAACCAAGTAGAGAA+TGG | 0.573146 | 2.4:+69716602 | None:intergenic |
ATTGAGATTTGCTGCTGCCG+AGG | 0.574585 | 2.4:-69707730 | MS.gene004211:intron |
TTGCAGAGTAAATCCAAAGT+GGG | 0.575538 | 2.4:-69706463 | MS.gene004211:intron |
ATTTGTAGACAGGTAATCGT+TGG | 0.576280 | 2.4:+69716634 | None:intergenic |
TCTGCAACTTGGAATCCAGT+TGG | 0.576711 | 2.4:+69708860 | None:intergenic |
GATCATTCATCATCTCCCTC+AGG | 0.579868 | 2.4:+69715598 | None:intergenic |
TGCTAATGCATGTCGTCTTG+AGG | 0.581633 | 2.4:-69706935 | MS.gene004211:intron |
AAAAGCCATACAGTCCTGAT+GGG | 0.581663 | 2.4:-69706789 | MS.gene004211:intron |
AGAAACATCACTCACGTTGG+AGG | 0.584237 | 2.4:-69711260 | MS.gene004211:intron |
AGTATATATTCACCCTTCAT+CGG | 0.585718 | 2.4:-69706737 | MS.gene004211:CDS |
ATTGTCGGCGAAACCGGTAG+CGG | 0.585830 | 2.4:-69716564 | MS.gene004211:CDS |
CTCAGGGAGAGGGATACAAA+AGG | 0.587938 | 2.4:-69707769 | MS.gene004211:CDS |
AGTAGAGAACTTCCAAAGCT+CGG | 0.587949 | 2.4:+69708921 | None:intergenic |
ATTTCCAGTTAAAGGCTTTG+GGG | 0.589591 | 2.4:-69709000 | MS.gene004211:intron |
TTTAAAATTTGTTACCGATG+GGG | 0.589931 | 2.4:-69715625 | MS.gene004211:CDS |
TTTCTAACCTGGTCAGCACG+TGG | 0.590505 | 2.4:+69711444 | None:intergenic |
TCTCCTCTGAACATCCAAGT+TGG | 0.594100 | 2.4:+69708005 | None:intergenic |
TCTATTTGGATCTCAGGGAG+AGG | 0.595728 | 2.4:-69707780 | MS.gene004211:CDS |
CTATTTGGATCTCAGGGAGA+GGG | 0.595788 | 2.4:-69707779 | MS.gene004211:CDS |
TGATGACAATAGATCCCTCA+TGG | 0.595949 | 2.4:-69706392 | MS.gene004211:CDS |
CATCATCATCCAAGATCCCA+AGG | 0.596814 | 2.4:+69708897 | None:intergenic |
AGTACTCTTGATCCATGAGC+GGG | 0.596911 | 2.4:-69712448 | MS.gene004211:intron |
GAGCAAAAGATTTACTTGGA+CGG | 0.597397 | 2.4:+69707958 | None:intergenic |
GAATTCCCTCATTAGACATG+TGG | 0.597790 | 2.4:+69709619 | None:intergenic |
GCTTCTGCTAGACAAAGAGC+TGG | 0.603108 | 2.4:-69710441 | MS.gene004211:CDS |
AGGGCTGGACGAGTTCGACC+AGG | 0.603545 | 2.4:-69710417 | MS.gene004211:CDS |
TTTGCAGAGTAAATCCAAAG+TGG | 0.604482 | 2.4:-69706464 | MS.gene004211:intron |
TGGTGGATGAAGCTCATGAA+AGG | 0.604552 | 2.4:-69715432 | MS.gene004211:CDS |
CAAAACCACTCAAATCCCTC+AGG | 0.604959 | 2.4:-69716541 | MS.gene004211:intron |
TGCTGTAGCTTGTAGAAGTG+AGG | 0.605035 | 2.4:+69706354 | None:intergenic |
AACTCATACACACCATGGCA+TGG | 0.607780 | 2.4:+69707386 | None:intergenic |
ACAAGCAATGAGTCGTCCAC+CGG | 0.610424 | 2.4:+69716408 | None:intergenic |
ACGTTTCTTAATGTATACAA+GGG | 0.616343 | 2.4:-69707463 | MS.gene004211:CDS |
TTCGTTGAATAAATGAACAG+CGG | 0.620861 | 2.4:+69711731 | None:intergenic |
GCAGCCTCCAATAGCCATGA+GGG | 0.626820 | 2.4:+69706378 | None:intergenic |
TTCTAACCTGGTCAGCACGT+GGG | 0.627262 | 2.4:+69711445 | None:intergenic |
CAGCCAACTTGGATGTTCAG+AGG | 0.629001 | 2.4:-69708008 | MS.gene004211:CDS |
CCAAGTAGAGAATGGCGTTG+CGG | 0.633612 | 2.4:+69716610 | None:intergenic |
ACCTGAATAGCACCGATGAA+GGG | 0.634582 | 2.4:+69706725 | None:intergenic |
ACCTGCAATCTTATCAGTCG+AGG | 0.636672 | 2.4:-69712982 | MS.gene004211:intron |
TTCGCCGACAATGATAGTGG+TGG | 0.649702 | 2.4:+69716575 | None:intergenic |
AGCAGAAACATCACTCACGT+TGG | 0.650532 | 2.4:-69711263 | MS.gene004211:CDS |
ACTGTGATGATTTACGAGAC+TGG | 0.657223 | 2.4:+69707434 | None:intergenic |
GATTGGACGAAAACCTTGGG+CGG | 0.657330 | 2.4:+69715186 | None:intergenic |
CGTGGGAGCCCTGAATAGAG+AGG | 0.658763 | 2.4:+69711462 | None:intergenic |
GAATACAAGCACATCTCCAG+TGG | 0.660656 | 2.4:+69711779 | None:intergenic |
GGAGATAATTACAATTGCTG+CGG | 0.667691 | 2.4:-69707987 | MS.gene004211:CDS |
ATTACAGACCTGGATTACAC+AGG | 0.669752 | 2.4:+69709569 | None:intergenic |
CAGTACTCTTGATCCATGAG+CGG | 0.675015 | 2.4:-69712449 | MS.gene004211:CDS |
TAGTACCTGAGGGATTTGAG+TGG | 0.679014 | 2.4:+69716536 | None:intergenic |
AGCAGCCTCCAATAGCCATG+AGG | 0.682887 | 2.4:+69706377 | None:intergenic |
ATCATCATCCAAGATCCCAA+GGG | 0.696835 | 2.4:+69708898 | None:intergenic |
CTTTGTGAACTACCATGCCA+TGG | 0.708432 | 2.4:-69707398 | MS.gene004211:intron |
ACAGTGGATTCTCAAAACAG+CGG | 0.719661 | 2.4:-69711135 | MS.gene004211:CDS |
ATACATTAAGAAACGTGACA+TGG | 0.721612 | 2.4:+69707470 | None:intergenic |
GCTGGCGTAGCCATATCCGG+AGG | 0.727235 | 2.4:+69716671 | None:intergenic |
GTAGTTGACGACGAAGAAGG+CGG | 0.730388 | 2.4:-69716735 | MS.gene004211:CDS |
AACTCAGAAGAATTGCACAG+AGG | 0.778214 | 2.4:-69707247 | MS.gene004211:CDS |
AGTCTCGTAAATCATCACAG+TGG | 0.815491 | 2.4:-69707432 | MS.gene004211:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 69706335 | 69716802 | 69706335 | ID=MS.gene004211 |
chr2.4 | mRNA | 69706335 | 69716802 | 69706335 | ID=MS.gene004211.t1;Parent=MS.gene004211 |
chr2.4 | exon | 69716542 | 69716802 | 69716542 | ID=MS.gene004211.t1.exon1;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69716542 | 69716802 | 69716542 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69716291 | 69716455 | 69716291 | ID=MS.gene004211.t1.exon2;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69716291 | 69716455 | 69716291 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69715579 | 69715658 | 69715579 | ID=MS.gene004211.t1.exon3;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69715579 | 69715658 | 69715579 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69715393 | 69715462 | 69715393 | ID=MS.gene004211.t1.exon4;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69715393 | 69715462 | 69715393 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69715200 | 69715285 | 69715200 | ID=MS.gene004211.t1.exon5;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69715200 | 69715285 | 69715200 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69712983 | 69713052 | 69712983 | ID=MS.gene004211.t1.exon6;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69712983 | 69713052 | 69712983 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69712449 | 69712544 | 69712449 | ID=MS.gene004211.t1.exon7;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69712449 | 69712544 | 69712449 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69711700 | 69711805 | 69711700 | ID=MS.gene004211.t1.exon8;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69711700 | 69711805 | 69711700 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69711452 | 69711498 | 69711452 | ID=MS.gene004211.t1.exon9;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69711452 | 69711498 | 69711452 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69711261 | 69711344 | 69711261 | ID=MS.gene004211.t1.exon10;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69711261 | 69711344 | 69711261 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69711123 | 69711176 | 69711123 | ID=MS.gene004211.t1.exon11;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69711123 | 69711176 | 69711123 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69710405 | 69710505 | 69710405 | ID=MS.gene004211.t1.exon12;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69710405 | 69710505 | 69710405 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69709578 | 69709668 | 69709578 | ID=MS.gene004211.t1.exon13;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69709578 | 69709668 | 69709578 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69708850 | 69709014 | 69708850 | ID=MS.gene004211.t1.exon14;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69708850 | 69709014 | 69708850 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69707973 | 69708062 | 69707973 | ID=MS.gene004211.t1.exon15;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69707973 | 69708062 | 69707973 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69707731 | 69707802 | 69707731 | ID=MS.gene004211.t1.exon16;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69707731 | 69707802 | 69707731 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69707399 | 69707497 | 69707399 | ID=MS.gene004211.t1.exon17;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69707399 | 69707497 | 69707399 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69707208 | 69707294 | 69707208 | ID=MS.gene004211.t1.exon18;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69707208 | 69707294 | 69707208 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69706936 | 69706989 | 69706936 | ID=MS.gene004211.t1.exon19;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69706936 | 69706989 | 69706936 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69706727 | 69706806 | 69706727 | ID=MS.gene004211.t1.exon20;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69706727 | 69706806 | 69706727 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
chr2.4 | exon | 69706335 | 69706479 | 69706335 | ID=MS.gene004211.t1.exon21;Parent=MS.gene004211.t1 |
chr2.4 | CDS | 69706335 | 69706479 | 69706335 | ID=cds.MS.gene004211.t1;Parent=MS.gene004211.t1 |
Gene Sequence |
Protein sequence |