Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047397.t1 | XP_003593709.1 | 97.9 | 701 | 13 | 1 | 1 | 699 | 1 | 701 | 0.00E+00 | 1305.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047397.t1 | F4JRJ6 | 74.8 | 691 | 171 | 2 | 4 | 694 | 3 | 690 | 6.9e-303 | 1040.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047397.t1 | G7IK78 | 97.9 | 701 | 13 | 1 | 1 | 699 | 1 | 701 | 0.0e+00 | 1305.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene87672 | MS.gene047397 | PPI |
MS.gene047397 | MS.gene042341 | PPI |
MS.gene047397 | MS.gene023392 | PPI |
MS.gene036929 | MS.gene047397 | PPI |
MS.gene047397 | MS.gene05323 | PPI |
MS.gene77305 | MS.gene047397 | PPI |
MS.gene047397 | MS.gene59988 | PPI |
MS.gene047397 | MS.gene005495 | PPI |
MS.gene047397 | MS.gene78458 | PPI |
MS.gene047397 | MS.gene20876 | PPI |
MS.gene98782 | MS.gene047397 | PPI |
MS.gene047397 | MS.gene27517 | PPI |
MS.gene047397 | MS.gene92776 | PPI |
MS.gene047397 | MS.gene018109 | PPI |
MS.gene047397 | MS.gene40397 | PPI |
MS.gene50492 | MS.gene047397 | PPI |
MS.gene048625 | MS.gene047397 | PPI |
MS.gene047397 | MS.gene07327 | PPI |
MS.gene071065 | MS.gene047397 | PPI |
MS.gene047397 | MS.gene08252 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047397.t1 | MTR_2g015320 | 98.003 | 701 | 12 | 1 | 1 | 699 | 1 | 701 | 0.0 | 1421 |
MS.gene047397.t1 | MTR_1g023985 | 48.012 | 654 | 317 | 5 | 43 | 696 | 562 | 1192 | 0.0 | 633 |
MS.gene047397.t1 | MTR_1g114490 | 48.346 | 635 | 305 | 5 | 64 | 698 | 514 | 1125 | 0.0 | 619 |
MS.gene047397.t1 | MTR_3g023880 | 46.049 | 658 | 320 | 9 | 43 | 693 | 404 | 1033 | 0.0 | 599 |
MS.gene047397.t1 | MTR_6g061840 | 46.012 | 652 | 326 | 7 | 43 | 690 | 246 | 875 | 0.0 | 598 |
MS.gene047397.t1 | MTR_1g086640 | 45.821 | 670 | 320 | 10 | 41 | 692 | 47 | 691 | 0.0 | 590 |
MS.gene047397.t1 | MTR_3g052610 | 43.391 | 696 | 326 | 11 | 41 | 692 | 44 | 715 | 0.0 | 567 |
MS.gene047397.t1 | MTR_5g075310 | 42.232 | 663 | 318 | 6 | 30 | 690 | 188 | 787 | 0.0 | 562 |
MS.gene047397.t1 | MTR_7g095080 | 41.218 | 706 | 337 | 8 | 44 | 693 | 41 | 724 | 0.0 | 556 |
MS.gene047397.t1 | MTR_4g485610 | 45.223 | 628 | 305 | 9 | 81 | 692 | 49 | 653 | 0.0 | 544 |
MS.gene047397.t1 | MTR_3g054400 | 40.758 | 660 | 362 | 7 | 43 | 696 | 360 | 996 | 0.0 | 544 |
MS.gene047397.t1 | MTR_2g098440 | 40.909 | 660 | 361 | 7 | 43 | 696 | 563 | 1199 | 1.28e-178 | 543 |
MS.gene047397.t1 | MTR_6g061840 | 47.664 | 535 | 257 | 6 | 43 | 573 | 246 | 761 | 2.53e-170 | 507 |
MS.gene047397.t1 | MTR_8g080240 | 39.222 | 668 | 357 | 15 | 51 | 697 | 4 | 643 | 1.88e-153 | 459 |
MS.gene047397.t1 | MTR_8g080240 | 39.222 | 668 | 357 | 15 | 51 | 697 | 4 | 643 | 5.14e-153 | 460 |
MS.gene047397.t1 | MTR_8g080240 | 41.772 | 553 | 292 | 8 | 51 | 596 | 4 | 533 | 6.18e-144 | 433 |
MS.gene047397.t1 | MTR_4g094992 | 38.783 | 526 | 281 | 6 | 188 | 693 | 14 | 518 | 3.62e-129 | 392 |
MS.gene047397.t1 | MTR_8g041990 | 33.901 | 646 | 289 | 9 | 30 | 671 | 85 | 596 | 2.40e-123 | 382 |
MS.gene047397.t1 | MTR_6g061840 | 49.025 | 359 | 165 | 2 | 43 | 401 | 246 | 586 | 1.12e-115 | 360 |
MS.gene047397.t1 | MTR_3g014030 | 33.819 | 686 | 371 | 16 | 44 | 687 | 255 | 899 | 2.01e-98 | 333 |
MS.gene047397.t1 | MTR_1g109170 | 31.542 | 707 | 402 | 18 | 48 | 683 | 326 | 1021 | 7.93e-98 | 327 |
MS.gene047397.t1 | MTR_1g109170 | 31.542 | 707 | 402 | 18 | 48 | 683 | 326 | 1021 | 8.47e-98 | 327 |
MS.gene047397.t1 | MTR_3g086770 | 33.189 | 693 | 393 | 17 | 38 | 698 | 249 | 903 | 2.21e-96 | 327 |
MS.gene047397.t1 | MTR_1g056490 | 31.579 | 703 | 406 | 15 | 48 | 683 | 228 | 922 | 1.07e-91 | 307 |
MS.gene047397.t1 | MTR_0267s0070 | 33.739 | 658 | 355 | 16 | 70 | 687 | 938 | 1554 | 3.44e-91 | 312 |
MS.gene047397.t1 | MTR_8g106630 | 29.844 | 707 | 417 | 17 | 48 | 683 | 270 | 968 | 8.58e-90 | 304 |
MS.gene047397.t1 | MTR_1543s0010 | 41.319 | 288 | 165 | 2 | 302 | 589 | 5 | 288 | 2.07e-69 | 229 |
MS.gene047397.t1 | MTR_3g055020 | 38.645 | 251 | 148 | 3 | 348 | 596 | 25 | 271 | 1.13e-51 | 186 |
MS.gene047397.t1 | MTR_8g045110 | 30.166 | 421 | 260 | 12 | 272 | 673 | 109 | 514 | 2.30e-51 | 189 |
MS.gene047397.t1 | MTR_4g134790 | 29.106 | 481 | 271 | 11 | 269 | 683 | 896 | 1372 | 8.90e-49 | 186 |
MS.gene047397.t1 | MTR_4g134790 | 36.612 | 183 | 101 | 5 | 48 | 217 | 602 | 782 | 4.93e-25 | 112 |
MS.gene047397.t1 | MTR_4g134790 | 29.106 | 481 | 271 | 11 | 269 | 683 | 899 | 1375 | 9.16e-49 | 186 |
MS.gene047397.t1 | MTR_4g134790 | 36.612 | 183 | 101 | 5 | 48 | 217 | 602 | 782 | 4.97e-25 | 112 |
MS.gene047397.t1 | MTR_4g023590 | 36.396 | 283 | 136 | 6 | 39 | 292 | 260 | 527 | 8.55e-47 | 179 |
MS.gene047397.t1 | MTR_4g023590 | 41.414 | 198 | 114 | 2 | 305 | 501 | 684 | 880 | 6.66e-32 | 133 |
MS.gene047397.t1 | MTR_1g088590 | 30.617 | 454 | 270 | 13 | 50 | 473 | 29 | 467 | 1.08e-45 | 176 |
MS.gene047397.t1 | MTR_5g090430 | 30.918 | 414 | 253 | 13 | 279 | 668 | 554 | 958 | 3.82e-43 | 168 |
MS.gene047397.t1 | MTR_5g090430 | 37.363 | 182 | 101 | 4 | 48 | 217 | 184 | 364 | 1.11e-31 | 132 |
MS.gene047397.t1 | MTR_5g090430 | 30.602 | 415 | 253 | 13 | 279 | 668 | 441 | 845 | 4.69e-43 | 168 |
MS.gene047397.t1 | MTR_5g090430 | 37.363 | 182 | 101 | 4 | 48 | 217 | 71 | 251 | 1.29e-31 | 132 |
MS.gene047397.t1 | MTR_8g044260 | 27.570 | 428 | 288 | 10 | 272 | 683 | 522 | 943 | 5.40e-41 | 162 |
MS.gene047397.t1 | MTR_8g044260 | 41.040 | 173 | 98 | 3 | 48 | 217 | 246 | 417 | 1.81e-29 | 125 |
MS.gene047397.t1 | MTR_4g120070 | 41.624 | 197 | 113 | 2 | 305 | 500 | 610 | 805 | 3.14e-32 | 134 |
MS.gene047397.t1 | MTR_4g120070 | 29.630 | 297 | 124 | 9 | 52 | 292 | 186 | 453 | 4.64e-27 | 118 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047397.t1 | AT4G18465 | 76.556 | 691 | 159 | 2 | 4 | 694 | 3 | 690 | 0.0 | 1117 |
MS.gene047397.t1 | AT1G32490 | 46.605 | 648 | 321 | 7 | 48 | 693 | 401 | 1025 | 0.0 | 630 |
MS.gene047397.t1 | AT1G32490 | 46.605 | 648 | 321 | 7 | 48 | 693 | 391 | 1015 | 0.0 | 630 |
MS.gene047397.t1 | AT2G35340 | 45.723 | 678 | 340 | 8 | 18 | 693 | 374 | 1025 | 0.0 | 625 |
MS.gene047397.t1 | AT2G35340 | 45.723 | 678 | 340 | 8 | 18 | 693 | 236 | 887 | 0.0 | 625 |
MS.gene047397.t1 | AT3G26560 | 47.095 | 654 | 323 | 5 | 43 | 696 | 507 | 1137 | 0.0 | 622 |
MS.gene047397.t1 | AT3G62310 | 46.370 | 675 | 318 | 10 | 41 | 696 | 51 | 700 | 0.0 | 602 |
MS.gene047397.t1 | AT2G47250 | 45.926 | 675 | 321 | 11 | 41 | 696 | 55 | 704 | 0.0 | 596 |
MS.gene047397.t1 | AT4G16680 | 44.315 | 686 | 347 | 10 | 16 | 693 | 97 | 755 | 0.0 | 592 |
MS.gene047397.t1 | AT1G26370 | 41.307 | 719 | 345 | 8 | 28 | 691 | 18 | 714 | 0.0 | 549 |
MS.gene047397.t1 | AT5G13010 | 40.303 | 660 | 365 | 7 | 43 | 696 | 550 | 1186 | 4.41e-177 | 539 |
MS.gene047397.t1 | AT3G62310 | 48.780 | 492 | 221 | 5 | 41 | 520 | 51 | 523 | 6.80e-158 | 467 |
MS.gene047397.t1 | AT3G62310 | 48.676 | 491 | 221 | 5 | 41 | 519 | 51 | 522 | 2.34e-156 | 464 |
MS.gene047397.t1 | AT1G27900 | 37.910 | 670 | 368 | 14 | 51 | 697 | 4 | 648 | 1.21e-145 | 441 |
MS.gene047397.t1 | AT4G16680 | 46.809 | 470 | 224 | 5 | 16 | 482 | 177 | 623 | 9.92e-139 | 422 |
MS.gene047397.t1 | AT1G27900 | 39.531 | 554 | 306 | 8 | 51 | 595 | 4 | 537 | 5.77e-135 | 408 |
MS.gene047397.t1 | AT1G27900 | 39.531 | 554 | 306 | 8 | 51 | 595 | 4 | 537 | 9.81e-135 | 408 |
MS.gene047397.t1 | AT2G35920 | 32.575 | 703 | 399 | 15 | 48 | 683 | 167 | 861 | 8.14e-105 | 341 |
MS.gene047397.t1 | AT2G35920 | 32.575 | 703 | 399 | 15 | 48 | 683 | 225 | 919 | 3.16e-104 | 341 |
MS.gene047397.t1 | AT2G35920 | 32.575 | 703 | 399 | 15 | 48 | 683 | 257 | 951 | 3.24e-104 | 341 |
MS.gene047397.t1 | AT2G01130 | 30.042 | 719 | 420 | 18 | 39 | 683 | 138 | 847 | 7.26e-93 | 311 |
MS.gene047397.t1 | AT2G01130 | 30.042 | 719 | 420 | 18 | 39 | 683 | 203 | 912 | 2.93e-92 | 310 |
MS.gene047397.t1 | AT5G10370 | 33.284 | 670 | 384 | 18 | 51 | 689 | 306 | 943 | 3.13e-91 | 312 |
MS.gene047397.t1 | AT4G01020 | 32.985 | 670 | 386 | 18 | 51 | 689 | 303 | 940 | 5.43e-90 | 308 |
MS.gene047397.t1 | AT1G48650 | 31.356 | 708 | 403 | 18 | 48 | 683 | 296 | 992 | 4.07e-87 | 297 |
MS.gene047397.t1 | AT1G48650 | 31.356 | 708 | 403 | 18 | 48 | 683 | 296 | 992 | 4.23e-87 | 297 |
MS.gene047397.t1 | AT1G58050 | 31.473 | 645 | 344 | 22 | 41 | 598 | 587 | 1220 | 1.93e-74 | 262 |
MS.gene047397.t1 | AT5G14900 | 42.701 | 274 | 141 | 7 | 428 | 692 | 2 | 268 | 1.67e-66 | 221 |
MS.gene047397.t1 | AT1G58060 | 30.081 | 492 | 273 | 13 | 259 | 683 | 894 | 1381 | 6.16e-51 | 192 |
MS.gene047397.t1 | AT1G58060 | 38.220 | 191 | 102 | 6 | 41 | 217 | 604 | 792 | 2.89e-27 | 119 |
MS.gene047397.t1 | AT1G33390 | 36.755 | 302 | 141 | 8 | 42 | 314 | 232 | 512 | 1.04e-45 | 176 |
MS.gene047397.t1 | AT1G33390 | 27.669 | 459 | 262 | 8 | 303 | 695 | 637 | 1091 | 1.81e-39 | 157 |
MS.gene047397.t1 | AT1G33390 | 36.755 | 302 | 141 | 8 | 42 | 314 | 232 | 512 | 1.04e-45 | 176 |
MS.gene047397.t1 | AT1G33390 | 27.669 | 459 | 262 | 8 | 303 | 695 | 637 | 1091 | 1.81e-39 | 157 |
MS.gene047397.t1 | AT5G04895 | 29.907 | 428 | 278 | 11 | 272 | 683 | 533 | 954 | 2.24e-41 | 163 |
MS.gene047397.t1 | AT5G04895 | 40.462 | 173 | 99 | 3 | 48 | 217 | 257 | 428 | 1.74e-33 | 138 |
MS.gene047397.t1 | AT2G47680 | 30.266 | 489 | 291 | 16 | 51 | 506 | 26 | 497 | 2.08e-40 | 160 |
MS.gene047397.t1 | AT1G06670 | 30.108 | 372 | 229 | 10 | 279 | 628 | 576 | 938 | 4.19e-40 | 159 |
MS.gene047397.t1 | AT1G06670 | 37.363 | 182 | 108 | 3 | 41 | 217 | 207 | 387 | 3.40e-32 | 134 |
MS.gene047397.t1 | AT1G06670 | 30.108 | 372 | 229 | 10 | 279 | 628 | 576 | 938 | 4.31e-40 | 159 |
MS.gene047397.t1 | AT1G06670 | 37.363 | 182 | 108 | 3 | 41 | 217 | 207 | 387 | 3.52e-32 | 134 |
MS.gene047397.t1 | AT2G30800 | 28.689 | 366 | 238 | 9 | 279 | 626 | 209 | 569 | 5.06e-39 | 155 |
MS.gene047397.t1 | AT2G30800 | 28.689 | 366 | 238 | 9 | 279 | 626 | 552 | 912 | 1.36e-38 | 154 |
MS.gene047397.t1 | AT2G30800 | 37.430 | 179 | 106 | 3 | 44 | 217 | 180 | 357 | 7.71e-33 | 136 |
Find 163 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTATGCATACAGTCTATT+TGG | 0.136281 | 2.3:-69882624 | MS.gene047397:intron |
CTGTTCAGGCTGTTTCTTCT+AGG | 0.204165 | 2.3:-69891156 | MS.gene047397:CDS |
TCTTCTTCTTCCTCCGGATA+TGG | 0.237865 | 2.3:-69891471 | MS.gene047397:CDS |
AGTTGAGAATGGCGCAATTC+TGG | 0.261132 | 2.3:-69891575 | None:intergenic |
TGGTTGTGGCTCCAATTTCT+AGG | 0.265548 | 2.3:-69885292 | MS.gene047397:CDS |
GCTTCGGGTTTCTCTGTTCC+TGG | 0.271519 | 2.3:+69891549 | None:intergenic |
TTTGGGGATCGATAATATAT+TGG | 0.272408 | 2.3:-69883814 | MS.gene047397:CDS |
CTTGCTTGGACTATTGAAAA+AGG | 0.289636 | 2.3:-69890215 | MS.gene047397:intron |
TCTCTACTCCCTTGGGATCT+TGG | 0.291941 | 2.3:-69883736 | MS.gene047397:CDS |
ATCAAGTTGGTTATACTATT+AGG | 0.292995 | 2.3:-69891102 | MS.gene047397:CDS |
GATTTCCAGTTAAAGGCTTT+GGG | 0.306358 | 2.3:-69883831 | MS.gene047397:intron |
CTAGCAGAAGCCCTAGAAAT+TGG | 0.312284 | 2.3:+69885281 | None:intergenic |
GATGTGCTTGTATTCCTTAC+TGG | 0.316329 | 2.3:-69886602 | MS.gene047397:CDS |
TGATTTCCAGTTAAAGGCTT+TGG | 0.330501 | 2.3:-69883832 | MS.gene047397:intron |
GATCTCTGATATTGAAAATC+TGG | 0.337569 | 2.3:-69885312 | MS.gene047397:CDS |
ACTATCATTGTCGGCGAAAC+CGG | 0.359000 | 2.3:-69891360 | MS.gene047397:CDS |
TCGTCAACTACCTGTGCTTC+GGG | 0.361670 | 2.3:+69891534 | None:intergenic |
TTGGGGATCGATAATATATT+GGG | 0.361787 | 2.3:-69883813 | MS.gene047397:CDS |
GTCGTCAACTACCTGTGCTT+CGG | 0.365035 | 2.3:+69891533 | None:intergenic |
ACCAAGACGACTCGCTGTTC+AGG | 0.375838 | 2.3:-69891170 | MS.gene047397:CDS |
CCGCAACGCCATTCTCTACT+TGG | 0.380130 | 2.3:-69891400 | MS.gene047397:CDS |
ACCCTTCATCGGTGCTATTC+AGG | 0.380359 | 2.3:-69881556 | MS.gene047397:intron |
AATAGATCCCTCATGGCTAT+TGG | 0.386520 | 2.3:-69881215 | MS.gene047397:CDS |
TGGAAGTTCTCTACTCCCTT+GGG | 0.390548 | 2.3:-69883743 | MS.gene047397:CDS |
TTGGAAGTTCTCTACTCCCT+TGG | 0.391288 | 2.3:-69883744 | MS.gene047397:CDS |
GTGTTGTTACAGTGTTATAA+TGG | 0.393810 | 2.3:-69890275 | MS.gene047397:intron |
ACCTCGACTGATAAGATTGC+AGG | 0.395827 | 2.3:+69887806 | None:intergenic |
ATTGAGGCTGGTTGGGCTGC+CGG | 0.396172 | 2.3:-69891217 | MS.gene047397:CDS |
ACTAATCGAAAGCACTCTTC+AGG | 0.396484 | 2.3:-69886530 | MS.gene047397:intron |
TTCCTCTTTCCTCTAGGAGT+TGG | 0.396820 | 2.3:+69886138 | None:intergenic |
AAGCAAGATGTCAGTTGAAA+TGG | 0.399094 | 2.3:+69890231 | None:intergenic |
ATACAGTCTATTTGGATCTC+AGG | 0.400650 | 2.3:-69882616 | MS.gene047397:intron |
TTCGACCAGGAAAATGTTAC+AGG | 0.403679 | 2.3:-69885232 | MS.gene047397:intron |
TGAAGCAATGATCCGAGCTT+TGG | 0.413230 | 2.3:-69883763 | MS.gene047397:CDS |
GTATCTGATTGAGGCTGGTT+GGG | 0.414430 | 2.3:-69891224 | MS.gene047397:CDS |
ATTTCAACTGACATCTTGCT+TGG | 0.417097 | 2.3:-69890229 | MS.gene047397:CDS |
CAAGTGGAATTTCTGCAACT+TGG | 0.419675 | 2.3:+69883679 | None:intergenic |
GTTAAGAAAGCAGTTATTGC+TGG | 0.420014 | 2.3:-69881794 | MS.gene047397:CDS |
CACGTTTCTTAATGTATACA+AGG | 0.420532 | 2.3:-69882294 | MS.gene047397:CDS |
TTGGCGTTGTTTATCGATGC+TGG | 0.431047 | 2.3:+69891443 | None:intergenic |
ATAATATATTGGGCTTTGAC+TGG | 0.435408 | 2.3:-69883803 | MS.gene047397:CDS |
TACATCCCATCAGGACTGTA+TGG | 0.438368 | 2.3:+69881614 | None:intergenic |
AGATTTGATCTCTGTATCTC+TGG | 0.439451 | 2.3:+69884425 | None:intergenic |
TCATATCAATGAAGAAGATT+AGG | 0.443820 | 2.3:+69881160 | None:intergenic |
GCCAAGCTTACTTCACCAAC+TGG | 0.448080 | 2.3:-69883705 | MS.gene047397:CDS |
GCCTGAACAGCGAGTCGTCT+TGG | 0.453470 | 2.3:+69891169 | None:intergenic |
AACAGAGAAACCCGAAGCAC+AGG | 0.453867 | 2.3:-69891544 | MS.gene047397:CDS |
CGGATCATTGCTTCAGGTGA+TGG | 0.454095 | 2.3:+69883771 | None:intergenic |
CTCTGAACATCCAAGTTGGC+TGG | 0.462620 | 2.3:+69882839 | None:intergenic |
GGTTGTGGCTCCAATTTCTA+GGG | 0.463394 | 2.3:-69885291 | MS.gene047397:CDS |
TGTTCAGGCTGTTTCTTCTA+GGG | 0.465073 | 2.3:-69891155 | MS.gene047397:CDS |
TTCTAGGGTTGCTCAAGAGA+TGG | 0.466640 | 2.3:-69891140 | MS.gene047397:CDS |
GAATTGAAAATAACCCACTT+TGG | 0.468850 | 2.3:+69881280 | None:intergenic |
AGACAAAGAGCTGGTAGGGC+TGG | 0.476988 | 2.3:-69885260 | MS.gene047397:CDS |
GTTAAACTTGGTGATCAAGT+TGG | 0.477413 | 2.3:-69891115 | MS.gene047397:CDS |
AGTATCTGATTGAGGCTGGT+TGG | 0.479870 | 2.3:-69891225 | MS.gene047397:CDS |
AAAGCTCGGATCATTGCTTC+AGG | 0.483536 | 2.3:+69883765 | None:intergenic |
TCTTAACCACATGTCTAATG+AGG | 0.484691 | 2.3:-69884453 | MS.gene047397:CDS |
GGGATGTACAAAACGTTAAG+AGG | 0.485113 | 2.3:-69881599 | MS.gene047397:CDS |
CTCCAACTCCTAGAGGAAAG+AGG | 0.486444 | 2.3:-69886140 | MS.gene047397:CDS |
TCTTGTCTCCTGTGTAATCC+AGG | 0.491145 | 2.3:-69884405 | MS.gene047397:intron |
ACTACTTTCCTCTTTCCTCT+AGG | 0.492137 | 2.3:+69886132 | None:intergenic |
CAAGAGATGGGAGTTAAACT+TGG | 0.492826 | 2.3:-69891127 | MS.gene047397:CDS |
TACTATTGAAGCAAAATCAA+TGG | 0.493274 | 2.3:-69890042 | MS.gene047397:CDS |
TCTAGGGTTGCTCAAGAGAT+GGG | 0.493990 | 2.3:-69891139 | MS.gene047397:CDS |
GGTTTCGCCGACAATGATAG+TGG | 0.498964 | 2.3:+69891362 | None:intergenic |
TGGCTGATTTCTTCCGCCCA+AGG | 0.500876 | 2.3:-69890022 | MS.gene047397:intron |
CTCTCTTAATAGGAAACCAC+TGG | 0.504086 | 2.3:-69886626 | MS.gene047397:intron |
TTACCGATGGGGTGCTCCTG+AGG | 0.504557 | 2.3:-69890437 | MS.gene047397:CDS |
TGCTAGACAAAGAGCTGGTA+GGG | 0.508207 | 2.3:-69885264 | MS.gene047397:CDS |
TCCAGTTGGTGAAGTAAGCT+TGG | 0.508830 | 2.3:+69883704 | None:intergenic |
CATTCCACCACTATCATTGT+CGG | 0.508919 | 2.3:-69891369 | MS.gene047397:CDS |
GCAATAATCAAACGCAACTC+TGG | 0.510658 | 2.3:+69890071 | None:intergenic |
ATAATAGCGTCCAGCCAACT+TGG | 0.512838 | 2.3:-69882849 | MS.gene047397:CDS |
CGATATCATCTTGACCAGTA+AGG | 0.513614 | 2.3:+69886588 | None:intergenic |
AGGGCTCCCACGTGCTGACC+AGG | 0.515295 | 2.3:-69886282 | MS.gene047397:intron |
ATCTTGCGAAAGTGATATGC+AGG | 0.516796 | 2.3:-69882037 | MS.gene047397:intron |
GCGTTGCGGTATTTGTAGAC+AGG | 0.517253 | 2.3:+69891414 | None:intergenic |
ATGGCGCAATTCTGGAAGCC+AGG | 0.517729 | 2.3:-69891567 | MS.gene047397:CDS |
CTGCTAGACAAAGAGCTGGT+AGG | 0.518625 | 2.3:-69885265 | MS.gene047397:CDS |
TAAAAGCCATACAGTCCTGA+TGG | 0.520580 | 2.3:-69881620 | MS.gene047397:intron |
TACCTGAATAGCACCGATGA+AGG | 0.520912 | 2.3:+69881554 | None:intergenic |
CAGCAGCCTGAACATAGTCT+TGG | 0.521541 | 2.3:+69887309 | None:intergenic |
GATGCTGGCGTAGCCATATC+CGG | 0.522367 | 2.3:+69891458 | None:intergenic |
GCCTGAACATAGTCTTGGAC+AGG | 0.522736 | 2.3:+69887314 | None:intergenic |
GAAGGCAAATTACCCGCTCA+TGG | 0.523634 | 2.3:+69887267 | None:intergenic |
CTTAACCACATGTCTAATGA+GGG | 0.524180 | 2.3:-69884452 | MS.gene047397:CDS |
ACCTGTCCAAGACTATGTTC+AGG | 0.533597 | 2.3:-69887315 | MS.gene047397:CDS |
ATTGTCTATGTTGTTGACAG+TGG | 0.536673 | 2.3:-69885982 | MS.gene047397:CDS |
TTGCAGTATCTGATTGAGGC+TGG | 0.538890 | 2.3:-69891229 | MS.gene047397:intron |
GCTTCAGGTGATGGAGATGC+TGG | 0.539926 | 2.3:+69883780 | None:intergenic |
TACAGTCTATTTGGATCTCA+GGG | 0.545479 | 2.3:-69882615 | MS.gene047397:intron |
AGATCCCTCATGGCTATTGG+AGG | 0.547377 | 2.3:-69881212 | MS.gene047397:CDS |
AGAAGAATTGCACAGAGGAT+AGG | 0.551527 | 2.3:-69882072 | MS.gene047397:CDS |
TACCGATGGGGTGCTCCTGA+GGG | 0.552778 | 2.3:-69890436 | MS.gene047397:CDS |
AAAACAGCGGTTCTACAATC+CGG | 0.553766 | 2.3:-69885953 | MS.gene047397:intron |
CAGGTAGTTGACGACGAAGA+AGG | 0.554742 | 2.3:-69891525 | MS.gene047397:CDS |
TGATATTGAAAATCTGGTTG+TGG | 0.556104 | 2.3:-69885306 | MS.gene047397:CDS |
GAGGCTGGTTGGGCTGCCGG+TGG | 0.563350 | 2.3:-69891214 | MS.gene047397:CDS |
CTCCCTCAGGAGCACCCCAT+CGG | 0.563660 | 2.3:+69890434 | None:intergenic |
TTGTTACAGTGTTATAATGG+TGG | 0.565300 | 2.3:-69890272 | MS.gene047397:intron |
GCGGCGAGAACCTGAAAATG+AGG | 0.570614 | 2.3:-69887849 | MS.gene047397:CDS |
GAACCTGAAAATGAGGCGAA+TGG | 0.571890 | 2.3:-69887842 | MS.gene047397:CDS |
AGTTTCAACCAAGTAGAGAA+TGG | 0.573146 | 2.3:+69891392 | None:intergenic |
ATTGAGATTTGCTGCTGCCG+AGG | 0.574585 | 2.3:-69882560 | MS.gene047397:intron |
TTGCAGAGTAAATCCAAAGT+GGG | 0.575538 | 2.3:-69881293 | MS.gene047397:intron |
ATTTGTAGACAGGTAATCGT+TGG | 0.576280 | 2.3:+69891424 | None:intergenic |
TCTGCAACTTGGAATCCAGT+TGG | 0.576711 | 2.3:+69883690 | None:intergenic |
GATCATTCATCATCTCCCTC+AGG | 0.579868 | 2.3:+69890421 | None:intergenic |
TGCTAATGCATGTCGTCTTG+AGG | 0.581633 | 2.3:-69881765 | MS.gene047397:intron |
AAAAGCCATACAGTCCTGAT+GGG | 0.581663 | 2.3:-69881619 | MS.gene047397:intron |
CAAAACCACTCAAATCCCTC+AGG | 0.581786 | 2.3:-69891331 | MS.gene047397:intron |
AGAAACATCACTCACGTTGG+AGG | 0.584237 | 2.3:-69886091 | MS.gene047397:intron |
AGTATATATTCACCCTTCAT+CGG | 0.585718 | 2.3:-69881567 | MS.gene047397:CDS |
ATTGTCGGCGAAACCGGTAG+CGG | 0.585830 | 2.3:-69891354 | MS.gene047397:CDS |
CTCAGGGAGAGGGATACAAA+AGG | 0.587938 | 2.3:-69882599 | MS.gene047397:CDS |
AGTAGAGAACTTCCAAAGCT+CGG | 0.587949 | 2.3:+69883751 | None:intergenic |
ATTTCCAGTTAAAGGCTTTG+GGG | 0.589591 | 2.3:-69883830 | MS.gene047397:intron |
TTTAAAATTTGTTACCGATG+GGG | 0.589931 | 2.3:-69890448 | MS.gene047397:CDS |
TTTCTAACCTGGTCAGCACG+TGG | 0.590505 | 2.3:+69886275 | None:intergenic |
TCTCCTCTGAACATCCAAGT+TGG | 0.594100 | 2.3:+69882835 | None:intergenic |
TCTATTTGGATCTCAGGGAG+AGG | 0.595728 | 2.3:-69882610 | MS.gene047397:CDS |
CTATTTGGATCTCAGGGAGA+GGG | 0.595788 | 2.3:-69882609 | MS.gene047397:CDS |
TGATGACAATAGATCCCTCA+TGG | 0.595949 | 2.3:-69881222 | MS.gene047397:CDS |
CATCATCATCCAAGATCCCA+AGG | 0.596814 | 2.3:+69883727 | None:intergenic |
AGTACTCTTGATCCATGAGC+GGG | 0.596911 | 2.3:-69887279 | MS.gene047397:intron |
GAGCAAAAGATTTACTTGGA+CGG | 0.597397 | 2.3:+69882788 | None:intergenic |
GAATTCCCTCATTAGACATG+TGG | 0.597790 | 2.3:+69884447 | None:intergenic |
GCTTCTGCTAGACAAAGAGC+TGG | 0.603108 | 2.3:-69885269 | MS.gene047397:CDS |
AGGGCTGGACGAGTTCGACC+AGG | 0.603545 | 2.3:-69885245 | MS.gene047397:CDS |
TTTGCAGAGTAAATCCAAAG+TGG | 0.604482 | 2.3:-69881294 | MS.gene047397:intron |
TGGTGGATGAAGCTCATGAA+AGG | 0.604552 | 2.3:-69890255 | MS.gene047397:CDS |
TGCTGTAGCTTGTAGAAGTG+AGG | 0.605035 | 2.3:+69881184 | None:intergenic |
AACTCATACACACCATGGCA+TGG | 0.607780 | 2.3:+69882216 | None:intergenic |
ACAAGCAATGAGTCGTCCAC+CGG | 0.610424 | 2.3:+69891198 | None:intergenic |
ACGTTTCTTAATGTATACAA+GGG | 0.616343 | 2.3:-69882293 | MS.gene047397:CDS |
TTCGTTGAATAAATGAACAG+CGG | 0.620861 | 2.3:+69886562 | None:intergenic |
TGCATTGCAGTATCTGATTG+AGG | 0.624170 | 2.3:-69891233 | MS.gene047397:intron |
GCAGCCTCCAATAGCCATGA+GGG | 0.626820 | 2.3:+69881208 | None:intergenic |
TTCTAACCTGGTCAGCACGT+GGG | 0.627262 | 2.3:+69886276 | None:intergenic |
CAGCCAACTTGGATGTTCAG+AGG | 0.629001 | 2.3:-69882838 | MS.gene047397:CDS |
CCAAGTAGAGAATGGCGTTG+CGG | 0.633612 | 2.3:+69891400 | None:intergenic |
ACCTGAATAGCACCGATGAA+GGG | 0.634582 | 2.3:+69881555 | None:intergenic |
ACCTGCAATCTTATCAGTCG+AGG | 0.636672 | 2.3:-69887807 | MS.gene047397:intron |
TTCGCCGACAATGATAGTGG+TGG | 0.649702 | 2.3:+69891365 | None:intergenic |
AGCAGAAACATCACTCACGT+TGG | 0.650532 | 2.3:-69886094 | MS.gene047397:CDS |
ACTGTGATGATTTACGAGAC+TGG | 0.657223 | 2.3:+69882264 | None:intergenic |
GATTGGACGAAAACCTTGGG+CGG | 0.657330 | 2.3:+69890009 | None:intergenic |
CGTGGGAGCCCTGAATAGAG+AGG | 0.658763 | 2.3:+69886293 | None:intergenic |
GAATACAAGCACATCTCCAG+TGG | 0.660656 | 2.3:+69886610 | None:intergenic |
GGAGATAATTACAATTGCTG+CGG | 0.667691 | 2.3:-69882817 | MS.gene047397:CDS |
ATTACAGACCTGGATTACAC+AGG | 0.669752 | 2.3:+69884397 | None:intergenic |
TAGAACCTGAGGGATTTGAG+TGG | 0.673826 | 2.3:+69891326 | None:intergenic |
CAGTACTCTTGATCCATGAG+CGG | 0.675015 | 2.3:-69887280 | MS.gene047397:CDS |
AGCAGCCTCCAATAGCCATG+AGG | 0.682887 | 2.3:+69881207 | None:intergenic |
ATCATCATCCAAGATCCCAA+GGG | 0.696835 | 2.3:+69883728 | None:intergenic |
CTTTGTGAACTACCATGCCA+TGG | 0.708432 | 2.3:-69882228 | MS.gene047397:intron |
ACAGTGGATTCTCAAAACAG+CGG | 0.719661 | 2.3:-69885966 | MS.gene047397:CDS |
ATACATTAAGAAACGTGACA+TGG | 0.721612 | 2.3:+69882300 | None:intergenic |
GCTGGCGTAGCCATATCCGG+AGG | 0.727235 | 2.3:+69891461 | None:intergenic |
GTAGTTGACGACGAAGAAGG+CGG | 0.730388 | 2.3:-69891522 | MS.gene047397:CDS |
AACTCAGAAGAATTGCACAG+AGG | 0.778214 | 2.3:-69882077 | MS.gene047397:CDS |
AGTCTCGTAAATCATCACAG+TGG | 0.815491 | 2.3:-69882262 | MS.gene047397:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 69881165 | 69891589 | 69881165 | ID=MS.gene047397 |
chr2.3 | mRNA | 69881165 | 69891589 | 69881165 | ID=MS.gene047397.t1;Parent=MS.gene047397 |
chr2.3 | exon | 69891332 | 69891589 | 69891332 | ID=MS.gene047397.t1.exon1;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69891332 | 69891589 | 69891332 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69891081 | 69891245 | 69891081 | ID=MS.gene047397.t1.exon2;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69891081 | 69891245 | 69891081 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69890402 | 69890481 | 69890402 | ID=MS.gene047397.t1.exon3;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69890402 | 69890481 | 69890402 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69890216 | 69890285 | 69890216 | ID=MS.gene047397.t1.exon4;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69890216 | 69890285 | 69890216 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69890023 | 69890108 | 69890023 | ID=MS.gene047397.t1.exon5;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69890023 | 69890108 | 69890023 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69887808 | 69887877 | 69887808 | ID=MS.gene047397.t1.exon6;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69887808 | 69887877 | 69887808 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69887280 | 69887375 | 69887280 | ID=MS.gene047397.t1.exon7;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69887280 | 69887375 | 69887280 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69886531 | 69886636 | 69886531 | ID=MS.gene047397.t1.exon8;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69886531 | 69886636 | 69886531 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69886283 | 69886329 | 69886283 | ID=MS.gene047397.t1.exon9;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69886283 | 69886329 | 69886283 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69886092 | 69886175 | 69886092 | ID=MS.gene047397.t1.exon10;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69886092 | 69886175 | 69886092 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69885954 | 69886007 | 69885954 | ID=MS.gene047397.t1.exon11;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69885954 | 69886007 | 69885954 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69885233 | 69885333 | 69885233 | ID=MS.gene047397.t1.exon12;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69885233 | 69885333 | 69885233 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69884406 | 69884496 | 69884406 | ID=MS.gene047397.t1.exon13;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69884406 | 69884496 | 69884406 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69883680 | 69883844 | 69883680 | ID=MS.gene047397.t1.exon14;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69883680 | 69883844 | 69883680 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69882803 | 69882892 | 69882803 | ID=MS.gene047397.t1.exon15;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69882803 | 69882892 | 69882803 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69882561 | 69882632 | 69882561 | ID=MS.gene047397.t1.exon16;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69882561 | 69882632 | 69882561 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69882229 | 69882327 | 69882229 | ID=MS.gene047397.t1.exon17;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69882229 | 69882327 | 69882229 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69882038 | 69882124 | 69882038 | ID=MS.gene047397.t1.exon18;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69882038 | 69882124 | 69882038 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69881766 | 69881819 | 69881766 | ID=MS.gene047397.t1.exon19;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69881766 | 69881819 | 69881766 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69881557 | 69881636 | 69881557 | ID=MS.gene047397.t1.exon20;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69881557 | 69881636 | 69881557 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
chr2.3 | exon | 69881165 | 69881309 | 69881165 | ID=MS.gene047397.t1.exon21;Parent=MS.gene047397.t1 |
chr2.3 | CDS | 69881165 | 69881309 | 69881165 | ID=cds.MS.gene047397.t1;Parent=MS.gene047397.t1 |
Gene Sequence |
Protein sequence |