AlfalfaGEDB | MS.gene005495

M. sativa cultivar XinJiangDaYe / MS.gene005495

KEGG: K12820
GO: GO:0003674 GO:0003824 GO:0004386 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0042623
PFAM: PF00271.34 PF04408.26 PF07717.19 PF13401.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005495.t1	XP_003591371.1	99.7	721	2	0	1	721	1	721	0.00E+00	1438.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005495.t1	Q9LZQ9	89.9	726	68	3	1	721	1	726	0.0e+00	1320.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005495.t1	G7ICV1	99.7	721	2	0	1	721	1	721	0.0e+00	1438.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001670	MS.gene005495	PPI
MS.gene002538	MS.gene005495	PPI
MS.gene00289	MS.gene005495	PPI
MS.gene003001	MS.gene005495	PPI
MS.gene004211	MS.gene005495	PPI
MS.gene004548	MS.gene005495	PPI
MS.gene005495	MS.gene001426	PPI
MS.gene005495	MS.gene028903	PPI
MS.gene005495	MS.gene07327	PPI
MS.gene005495	MS.gene072064	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene005495.t1	MTR_1g086640	99.723	721	2	0	1	721	1	721	1499
MS.gene005495.t1	MTR_3g052610	86.769	718	65	3	1	691	1	715	1274
MS.gene005495.t1	MTR_4g485610	85.319	722	66	2	1	721	1	683	1248
MS.gene005495.t1	MTR_1g023985	52.280	658	296	4	50	706	563	1203	726
MS.gene005495.t1	MTR_1g114490	53.096	646	279	7	57	701	506	1128	711
MS.gene005495.t1	MTR_3g023880	53.282	655	284	9	52	702	407	1043	702
MS.gene005495.t1	MTR_6g061840	51.442	659	297	9	50	702	247	888	674
MS.gene005495.t1	MTR_5g075310	49.469	659	273	9	47	702	199	800	632
MS.gene005495.t1	MTR_3g054400	44.196	672	346	9	50	714	361	1010	603
MS.gene005495.t1	MTR_2g098440	44.179	670	347	9	50	712	564	1213	602

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene005495.t1	AT3G62310	89.945	726	68	3	1	721	1	726	1370
MS.gene005495.t1	AT2G47250	88.340	729	77	2	1	721	1	729	1350
MS.gene005495.t1	AT3G62310	89.675	523	50	2	1	519	1	523	966
MS.gene005495.t1	AT3G62310	89.036	529	53	3	1	524	1	529	962
MS.gene005495.t1	AT3G26560	52.432	658	295	5	50	706	508	1148	720
MS.gene005495.t1	AT1G32490	51.170	684	306	10	29	702	370	1035	717
MS.gene005495.t1	AT1G32490	51.170	684	306	10	29	702	360	1025	717
MS.gene005495.t1	AT2G35340	51.098	683	307	10	29	702	371	1035	710
MS.gene005495.t1	AT2G35340	51.098	683	307	10	29	702	233	897	709
MS.gene005495.t1	AT4G16680	51.135	661	296	8	52	706	130	769	674

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Find 163 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTATGTCTCCAGC+AGG	0.564551	1.1:+64308774	None:intergenic
AAAACTAACGGCGGTTTAAT+CGG	0.374136	1.1:-64310529	MS.gene005495:CDS
AAAAGAAGTTGCAAATATGG+GGG	0.660073	1.1:-64308706	MS.gene005495:CDS
AAAATCTTCTGCTGCATAGC+TGG	0.349787	1.1:+64308636	None:intergenic
AAAATTTCAGGATAAGTCTG+CGG	0.680372	1.1:+64308327	None:intergenic
AAACAGACCTGACTTGAAGT+TGG	0.531317	1.1:-64308970	MS.gene005495:CDS
AAAGACTCAACACGAACTCG+AGG	0.597221	1.1:+64308468	None:intergenic
AAAGATGCTTGTTGTTAGTC+CGG	0.469630	1.1:-64308097	MS.gene005495:CDS
AAAGCACGCATTAAGGTTTC+AGG	0.274292	1.1:+64308216	None:intergenic
AAATCTTCTGCTGCATAGCT+GGG	0.474547	1.1:+64308637	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTACAAGCCTTGATG+GGG	-	chr1.1:64310076-64310095	MS.gene005495:intron	30.0%
AAAAGAAGTTGCAAATATGG+GGG	-	chr1.1:64308117-64308136	MS.gene005495:CDS	30.0%
AAAAGCTAATTGTAGGATTG+GGG	-	chr1.1:64307070-64307089	MS.gene005495:intron	30.0%
AAAATTTCAGGATAAGTCTG+CGG	+	chr1.1:64308499-64308518	None:intergenic	30.0%
AAACTGCAGTCATTACTTAA+AGG	+	chr1.1:64306591-64306610	None:intergenic	30.0%
AACTGCAGTCATTACTTAAA+GGG	+	chr1.1:64306590-64306609	None:intergenic	30.0%
AAGAAATGGATGTGAGTATT+GGG	-	chr1.1:64307498-64307517	MS.gene005495:intron	30.0%
AATCAGACTTTGATTCTTGT+TGG	-	chr1.1:64306441-64306460	MS.gene005495:intron	30.0%
ACCAGATGTTTCAGTAATTT+CGG	+	chr1.1:64310277-64310296	None:intergenic	30.0%
ACGACAACTTCGTTAATAAT+AGG	-	chr1.1:64309451-64309470	MS.gene005495:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	64306225	64310620	64306225	ID=MS.gene005495
chr1.1	mRNA	64306225	64310620	64306225	ID=MS.gene005495.t1;Parent=MS.gene005495
chr1.1	exon	64310354	64310620	64310354	ID=MS.gene005495.t1.exon1;Parent=MS.gene005495.t1
chr1.1	CDS	64310354	64310620	64310354	ID=cds.MS.gene005495.t1;Parent=MS.gene005495.t1
chr1.1	exon	64309266	64309468	64309266	ID=MS.gene005495.t1.exon2;Parent=MS.gene005495.t1
chr1.1	CDS	64309266	64309468	64309266	ID=cds.MS.gene005495.t1;Parent=MS.gene005495.t1
chr1.1	exon	64308049	64309133	64308049	ID=MS.gene005495.t1.exon3;Parent=MS.gene005495.t1
chr1.1	CDS	64308049	64309133	64308049	ID=cds.MS.gene005495.t1;Parent=MS.gene005495.t1
chr1.1	exon	64307516	64307641	64307516	ID=MS.gene005495.t1.exon4;Parent=MS.gene005495.t1
chr1.1	CDS	64307516	64307641	64307516	ID=cds.MS.gene005495.t1;Parent=MS.gene005495.t1
chr1.1	exon	64307177	64307415	64307177	ID=MS.gene005495.t1.exon5;Parent=MS.gene005495.t1
chr1.1	CDS	64307177	64307415	64307177	ID=cds.MS.gene005495.t1;Parent=MS.gene005495.t1
chr1.1	exon	64306948	64307066	64306948	ID=MS.gene005495.t1.exon6;Parent=MS.gene005495.t1
chr1.1	CDS	64306948	64307066	64306948	ID=cds.MS.gene005495.t1;Parent=MS.gene005495.t1
chr1.1	exon	64306225	64306351	64306225	ID=MS.gene005495.t1.exon7;Parent=MS.gene005495.t1
chr1.1	CDS	64306225	64306351	64306225	ID=cds.MS.gene005495.t1;Parent=MS.gene005495.t1

Gene Sequence

>MS.gene005495

ATGGGTACAGAGAGGAAGAGGAAGGTGAGTTTATTCGACGTCGTCGACGACGCTGCCGCGAAGATGGTGAAAACTAACGGCGGTTTAATCGGTAACAATCTCATTAACCGTTGGAATGGAAAACCTTACTCGCAAAGGTATCATGAGATTTTGGAGAAGAGGAAAACTCTTCCTGTTTGGCATCAGAAAGAGGATTTCTTGAAGGTTTTGAAGGATAATCAGACTTTGATTCTTGTTGGTGAAACTGGTAGTGGAAAAACTACACAGGTTTGTTTCAAAGATTTTACTTCGTTTTGTTGTTATTTGGTTATGTTTAGATCATTTTGGAAATAACTGATTAATGAATAAACCATAGATTTAGTCCCTTTAAGTAATGACTGCAGTTTTAACAAGGCGCTGATTAGGGTTTATATGTTTTTGAATTATGGCCCATTTGGATTGGCTTATTTTCTAGCTCATGAAAAATAGCTTATGCAAATAAATATGGTTTTATTTTAATTCATAAGTTCTCACAACCCAAAATTGTGGCTTCATAAGCTGATTTTTCATAAACTACATCGACAAGCTTTTGAATGATACATAAAAGCTTATTTATTTGCATAAGCTACAAAAATAAGTCAATCCAAACAGGCCCTTAATGCTGATACGTTAAGTAGTACCTAAGTATATGAAATCCATTAATTTAGTTCCTAAACTATACAAAATCATATATAAACACAAACTAAAAATTATATGAACACTAATTGGCGCGTGTTTAAAATGCAGTCATTACTATGTAGTCGTTTCATGATAGGTGGTGATATTTTAAGCTCAATTTGGCACTAAAAATTGAAGTTAATGAAGTAAAAAGCTAATTGTAGGATTGGGGCTTGGAGTGAATACTAGATATGTTATGGGATAAGATGCTTGGAGTGAATACTAGATATCTTATGGGATAAGATTGGTTATATAAGTGTGCAGGTTTCTAATATTGATGATATATTCCGCTGAAATTGGCACTAAAAATTAGAGTGGAATTGTATATATATAAAATAAAATAAAAAATAGAGGAGAATTTGGTAGCTAATTGTTGTCCTTTTATGGGGTAAGATCGGTTATTTAAGTTTGTAATTTGCTAATTTAATTTCTTTGGTGTGTAATTTTGGGTGACAGATCCCTCAGTTCGTTTTAGAAGCTGTTGATTTAGAGACTCCAGATAAGCGCAAGAAGATGATGATTGCATGCACTCAGCCTCGTAGAGTGGCTGCCATGTCTGTTTCACGCCGTGTGGCTGAAGAAATGGATGTGAGTATTGGGGAAGAGGTTGGTTATAGCATCAGATTTGAAGACTGTAGTAGTGCAAGGACAGTTTTGAAGTATGTTTTATTTTTCCTTGAAATTACGTTGTGTAATTGATTTGAAGCTCATTGTTATACTATTTTTACATTAAATTGTTTTCTCCATCTCTTTTATTCTGAAATGTAATGTTTTTTGCTCCCCCACCGCAGATATCTAACAGATGGTATGCTTTTGAGAGAAGCAATGACGGATCCACTCTTGGAGCGATACAAAGTAATAATTCTTGATGAAGCTCACGAAAGGACTTTGGCTACTGATGTGCTATTCGGTCTTCTTAAGGAAGTTCTTAAAAACAGACCTGACTTGAAGTTGGTGGTTATGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTTATGAAAGTTCCTGGAAGGCTGCATCCAGTGGAAATTTTTTATACTCAGGAACCGGAAAGAGATTACTTGGAGGCTGCTATTAGGACAGTGGTGCAGATTCACATGTGTGAACCTGCTGGAGACATACTTGTTTTTCTTACTGGAGAGGAAGAGATAGAAGATGCATGCCGCAAAATATCAAAAGAAGTTGCAAATATGGGGGACCAGGTGGGCCCTGTGAAAGCTGTACCATTGTATTCTACTCTTCCCCCAGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCAGTTAAGGAGGGAGGCCCCCCTGGAAGGAAAATTGTGGTGTCAACAAACATAGCAGAAACTTCCTTGACAATTGATGGCATAGTCTATGTTATTGACCCCGGATTTGCTAAGCAGAAGGTCTATAACCCTCGAGTTCGTGTTGAGTCTTTGTTGGTGTCTCCAATATCAAAAGCTAGTGCACACCAGAGGTCTGGACGTGCTGGAAGAACTCAACCGGGGAAATGCTTTAGACTTTATACCGAAAGAAGTTTCAATAATGATCTTCAGCCGCAGACTTATCCTGAAATTTTGAGATCTAATCTTGCCAACACAGTTCTTACATTGAAGAAACTGGGCATAGATGATTTAGTTCATTTTGACTTCATGGACCCTCCTGCCCCTGAAACCTTAATGCGTGCTTTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGAAGGTAACTTAACAAAGCTTGGTGAGATTATGAGTGAGTTTCCGTTGGACCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCGGAGTTCAACTGTTCGAATGAGATTCTTTCTATTTCTGCAATGTTATCAGGTATGATTCTTTTCTATTATTATTGCTTTGTGTCTGTCCAGAGTCCCACCATAATGCTAAGGGAACTTAGTTGAGTTAGGCTTCTTTTGAAATGGAAGCCCAGCATTTGTTCATGTGTGCGGGCAATGCCGTGCACATGATCAAGATGTTTAACTGCTTACATGTGTGCTCAGTTGCACATGAATGCGGTTGGTGGAGTGTGTCCAGTTAGGTAGTCATCAGCAGCTGTCTTCTTTGGGTTCCATGCCCCCGGTTGGCATGTACCATAGGATTCTAAGTAAGTGCTGATGCAGATAGTTGCAGTTTCTCAGTATTCTCTCATGAAGAAAATGGTGTGCTCTCGACTCTATGCATCTGCTGACCTTCTTCCGTGGACCTCGTCTGTGATAATCAATTTCTTTCTTTAGTACCCAATTGCTTTATCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCCAAAGCTAGGTTTGGACACATCGATGGAGATCATCTCACACTCTTGAATGTATACCATGCCTACAAGCAAAACAGTAAGTGCATACTCCTACTTTTTTTCATTTTATTCTCAATCTTGCTGTTTATTTTTTTTCTGATTGGAAGTTTATTAAATGTATGCAAATGGCTTTTCAGACGAGGATGCTTCTTGGTGCTACGACAACTTCGTTAATAATAGGGCGCTTAAATCAGCTGATAATGTTCGACAACAGCTGGTGCGTATCATGGCTAGGTTTAACCTGAAGTTATGCAGCACTGACTTCAATAGTCGCGACTACTACGTCAACATAAGAAAGGCAATGCTAGCAGGATATTTCATGCAGGTGGCTCATCTTGAGCGCACAGGACACTACTTGACAGTTAAAGACAACCAGGTTTGCTAAATTGATTTATATTCCTCTGTTTTTCATTTTGTATTGCCAAAATAGCTATTTGTCTAAGCCGAAGATTTGCATTCATATTTAACGATTCTGCTCTGGTATAGGTGGTACACTTGCATCCATCAAATTGCCTGGACCACAAGCCCGAGTGGGTTATCTATAATGAATATGTTCTTACGAGTCGGAATTTCATACGTACTGTGACGGATATTCGTGGTGAATGGTAAGATTTTATTGTTGTAAATTGTAATATCCCGACCCTATGGTTGTCCTAGAAAAAGACTTAGTTTTGGAACCTTGAGCTGGCAAAATGCAAATTATTTTTATATGATATTTACTGGGATACTTGTGTTCAGTAAAAATGCTGAAGCTAATCTGAAATTTGGACCTAGTTTAGATAAAAAAATTACAAGCCTTGATGGGGAAAGAAAGATTGATTTCATTTTAAGTGTTCGAGCTTCTAGCAGAACTTTAAATCAGTTTGTATACCTCAAGTCTTTTCCAAAGTCCCTCATCTAACTTCTACACAAGTACCTAAATATTTTTAATTAGTTGGAAAATGAATACGTAAGCTATTGAACTGGACCATTGTTTATAATCCGAAATTACTGAAACATCTGGTGGTAATTCTTATCATCAATTAACTTGAGTATATTAAGTGCAGAAGAAGACACAATTTGTTATTTTGAATTCTACTCATTACTATGGATCTAATGTTGCAAGACGAGAGAGCCAGTAATAATACTACGGACCTCGTGGTTCTTGTTTTCATTGATGTTATTGAGATGTACTTAACTCTGATCATTTATTATCTGACAGGTTGGTTGATATAGCACCACATTACTATGATTTGTCTAATTTTCCACAATGTGAAGCGAAGCGTGTTCTTGAAAAGCTTTACAAGAAACGAGAGAAGGAAAAGGATGAAGCCCGGAATCGTAAATGA

Protein sequence

>MS.gene005495.t1

MGTERKRKVSLFDVVDDAAAKMVKTNGGLIGNNLINRWNGKPYSQRYHEILEKRKTLPVWHQKEDFLKVLKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRKKMMIACTQPRRVAAMSVSRRVAEEMDVSIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKISKEVANMGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDASWCYDNFVNNRALKSADNVRQQLVRIMARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKDEARNRK