AlfalfaGEDB | MS.gene51562

M. sativa cultivar XinJiangDaYe / MS.gene51562

KEGG: K11251
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00125.27 PF16211.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51562.t1	XP_004498649.1	100	84	0	0	1	84	51	134	4.80E-37	163.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51562.t1	Q8H7Y8	98.8	83	1	0	2	84	56	138	9.9e-39	160.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51562.t1	G7I6D5	100.0	84	0	0	1	84	51	134	3.5e-37	163.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene51562	0.800177	1.63E-48	-1.69E-46
MS.gene049876	MS.gene51562	0.809728	1.64E-50	-1.69E-46
MS.gene050277	MS.gene51562	0.812633	3.84E-51	-1.69E-46
MS.gene050290	MS.gene51562	0.818789	1.63E-52	-1.69E-46
MS.gene050916	MS.gene51562	0.847496	1.11E-59	-1.69E-46
MS.gene051903	MS.gene51562	0.812473	4.17E-51	-1.69E-46
MS.gene052947	MS.gene51562	0.815377	9.54E-52	-1.69E-46
MS.gene054937	MS.gene51562	0.844997	5.34E-59	-1.69E-46
MS.gene056075	MS.gene51562	0.834121	3.60E-56	-1.69E-46
MS.gene056631	MS.gene51562	0.80947	1.86E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51562.t1	MTR_1g011750	100.000	84	0	0	1	84	51	134	1.70e-55	167
MS.gene51562.t1	MTR_1g011850	100.000	84	0	0	1	84	51	134	1.70e-55	167
MS.gene51562.t1	MTR_1g071040	92.857	84	6	0	1	84	51	134	3.40e-51	157
MS.gene51562.t1	MTR_1g114050	88.095	84	10	0	1	84	48	131	2.35e-48	149
MS.gene51562.t1	MTR_4g048490	83.582	67	11	0	18	84	39	105	2.60e-35	115
MS.gene51562.t1	MTR_7g108320	63.636	77	27	1	5	80	50	126	3.95e-28	99.0
MS.gene51562.t1	MTR_7g114060	63.636	77	27	1	5	80	47	123	8.17e-28	98.2
MS.gene51562.t1	MTR_7g114040	63.636	77	27	1	5	80	47	123	8.17e-28	98.2
MS.gene51562.t1	MTR_2g082220	63.291	79	28	1	5	82	44	122	2.11e-27	96.7
MS.gene51562.t1	MTR_2g082510	63.291	79	28	1	5	82	44	122	2.88e-27	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51562.t1	AT1G52740	96.386	83	3	0	2	84	52	134	6.95e-53	161
MS.gene51562.t1	AT3G54560	95.181	83	4	0	2	84	54	136	9.52e-53	160
MS.gene51562.t1	AT3G54560	95.181	83	4	0	2	84	54	136	9.52e-53	160
MS.gene51562.t1	AT2G38810	92.771	83	6	0	2	84	54	136	1.52e-51	158
MS.gene51562.t1	AT2G38810	92.771	83	6	0	2	84	54	136	1.52e-51	158
MS.gene51562.t1	AT2G38810	92.771	83	6	0	2	84	54	136	1.52e-51	158
MS.gene51562.t1	AT2G38810	92.771	83	6	0	2	84	54	136	1.52e-51	158
MS.gene51562.t1	AT4G13570	82.192	73	13	0	2	74	46	118	6.52e-39	125
MS.gene51562.t1	AT4G13570	82.192	73	13	0	2	74	52	124	2.84e-38	124
MS.gene51562.t1	AT1G54690	64.000	75	26	1	5	78	50	124	1.71e-27	97.4

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Find 24 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAACAATAGCTGGTGG+TGG	0.608922	1.4:+8772006	MS.gene51562:CDS
AACTGCAGAGGTGTTGGAGT+TGG	0.540859	1.4:+8771888	MS.gene51562:CDS
AAGTCAAGGACAATGGCACA+TGG	0.622887	1.4:+8771814	None:intergenic
AATGGCACATGGAAGAGTTG+GGG	0.645846	1.4:+8771825	None:intergenic
ACAATGGCACATGGAAGAGT+TGG	0.476378	1.4:+8771823	None:intergenic
ACATGGAAGAGTTGGGGCTA+CGG	0.468116	1.4:+8771831	MS.gene51562:CDS
ACTTGTTGATAAGAGACTTG+TGG	0.572936	1.4:-8772044	None:intergenic
AGTTAAATACTCTAGGATAG+CGG	0.703360	1.4:-8771869	None:intergenic
ATAAGAGACTTGTGGATATG+AGG	0.507095	1.4:-8772036	None:intergenic
ATAGCAAGCTGTAGATGTCT+CGG	0.584334	1.4:-8771952	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAGAGACTTGTGGATATG+AGG	-	chr1.4:8772039-8772058	None:intergenic	35.0%
TCTTATCAACAAGTCCTCAA+AGG	+	chr1.4:8772053-8772072	MS.gene51562:CDS	35.0%
ATAGCAAGCTGTAGATGTCT+CGG	-	chr1.4:8771955-8771974	None:intergenic	40.0%
ATCAAAGGAACAATAGCTGG+TGG	+	chr1.4:8772003-8772022	MS.gene51562:CDS	40.0%
CCTCTGCAGTTAAATACTCT+AGG	-	chr1.4:8771879-8771898	None:intergenic	40.0%
CTCATCAAAGGAACAATAGC+TGG	+	chr1.4:8772000-8772019	MS.gene51562:CDS	40.0%
GAACTTGACACTCTCATCAA+AGG	+	chr1.4:8771988-8772007	MS.gene51562:CDS	40.0%
AAAGGAACAATAGCTGGTGG+TGG	+	chr1.4:8772006-8772025	MS.gene51562:CDS	45.0%
CAATGCAAGCAAGGATCTGA+AGG	+	chr1.4:8771915-8771934	MS.gene51562:CDS	45.0%
TGTCAAGTTCTTCGTCTCCA+CGG	-	chr1.4:8771978-8771997	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	8771826	8772080	8771826	ID=MS.gene51562
chr1.4	mRNA	8771826	8772080	8771826	ID=MS.gene51562.t1;Parent=MS.gene51562
chr1.4	exon	8771826	8772080	8771826	ID=MS.gene51562.t1.exon1;Parent=MS.gene51562.t1
chr1.4	CDS	8771826	8772080	8771826	ID=cds.MS.gene51562.t1;Parent=MS.gene51562.t1

Gene Sequence	>MS.gene51562 ATGGCACATGGAAGAGTTGGGGCTACGGCTGCAGTTTATTCTGCCGCTATCCTAGAGTATTTAACTGCAGAGGTGTTGGAGTTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGCGTATTACACCGAGACATCTACAGCTTGCTATCCGTGGAGACGAAGAACTTGACACTCTCATCAAAGGAACAATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAGTCCTCAAAGGAATGA
Protein sequence	>MS.gene51562.t1 MAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE