AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52031

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52031.t1 MTR_3g011440 95.940 665 20 4 1 659 1 664 0.0 1318
MS.gene52031.t1 MTR_8g042750 59.797 689 227 9 15 658 4 687 0.0 842
MS.gene52031.t1 MTR_7g088370 47.083 737 278 20 1 658 1 704 0.0 632
MS.gene52031.t1 MTR_5g013420 41.558 539 293 13 125 658 567 1088 6.87e-123 391
MS.gene52031.t1 MTR_5g013420 41.713 537 291 13 125 656 567 1086 1.05e-122 390
MS.gene52031.t1 MTR_4g010830 39.889 539 301 14 125 658 459 979 1.79e-113 363
MS.gene52031.t1 MTR_8g070075 40.546 476 251 12 172 631 290 749 3.24e-110 349
MS.gene52031.t1 MTR_8g070070 41.239 468 255 12 174 631 299 756 1.96e-109 348
MS.gene52031.t1 MTR_1g035420 37.058 537 299 14 108 631 135 645 1.96e-106 337
MS.gene52031.t1 MTR_8g071030 40.179 448 247 9 194 631 300 736 5.15e-104 333
MS.gene52031.t1 MTR_4g010550 38.554 498 252 15 166 658 15 463 2.36e-99 312
MS.gene52031.t1 MTR_6g061270 36.791 511 282 15 171 655 195 690 5.32e-94 305
MS.gene52031.t1 MTR_7g084090 36.957 506 293 12 169 655 255 753 1.46e-92 303
MS.gene52031.t1 MTR_1g035400 34.570 512 301 14 139 631 68 564 7.30e-91 293
MS.gene52031.t1 MTR_6g044690 34.586 532 285 13 139 633 60 565 2.45e-89 289
MS.gene52031.t1 MTR_6g061200 35.729 501 272 14 171 655 195 661 5.52e-88 288
MS.gene52031.t1 MTR_0376s0030 35.098 510 291 14 135 633 83 563 2.75e-85 279
MS.gene52031.t1 MTR_6g043960 32.596 497 273 13 155 633 31 483 1.37e-71 240
MS.gene52031.t1 MTR_7g084090 38.547 358 206 7 169 515 255 609 1.51e-69 239
MS.gene52031.t1 MTR_1g048950 33.607 488 266 12 189 658 85 532 4.36e-66 227
MS.gene52031.t1 MTR_2g054460 31.250 512 280 12 139 633 9 465 2.40e-65 223
MS.gene52031.t1 MTR_7g445710 29.799 547 271 20 135 654 78 538 4.09e-59 208
MS.gene52031.t1 MTR_7g445530 29.750 521 255 19 135 630 78 512 1.77e-55 197
MS.gene52031.t1 MTR_7g450730 28.707 526 269 17 135 654 75 500 5.66e-54 193
MS.gene52031.t1 MTR_7g052480 31.680 363 210 11 302 655 219 552 3.79e-42 161
MS.gene52031.t1 MTR_5g018850 31.562 320 168 9 370 658 1207 1506 1.22e-32 135
MS.gene52031.t1 MTR_8g078490 29.909 331 174 9 361 658 947 1252 1.20e-31 132
MS.gene52031.t1 MTR_1g080340 27.811 338 168 11 372 655 267 582 1.00e-30 127
MS.gene52031.t1 MTR_8g078505 29.193 322 177 9 359 654 237 533 7.29e-29 121
MS.gene52031.t1 MTR_1g069570 28.743 334 169 10 372 655 428 742 3.07e-28 121
MS.gene52031.t1 MTR_4g132610 34.703 219 114 4 445 658 852 1046 4.99e-28 120
MS.gene52031.t1 MTR_7g098390 28.049 328 173 7 374 655 388 698 1.23e-25 112
MS.gene52031.t1 MTR_7g445600 35.065 154 59 2 477 630 243 355 1.25e-23 103
MS.gene52031.t1 MTR_7g445600 37.615 109 56 4 192 300 124 220 7.16e-11 64.7
MS.gene52031.t1 MTR_1g069570 26.966 267 128 8 372 589 428 676 1.42e-17 87.4
MS.gene52031.t1 MTR_1g098370 31.443 194 97 6 462 654 75 233 1.63e-17 86.3
MS.gene52031.t1 MTR_1g098000 31.443 194 97 6 462 654 72 230 2.92e-17 85.5
MS.gene52031.t1 MTR_6g059310 27.670 206 95 5 459 655 87 247 3.21e-15 77.8
MS.gene52031.t1 MTR_6g059310 27.670 206 95 5 459 655 87 247 3.35e-15 77.8
MS.gene52031.t1 MTR_0071s0100 30.928 194 96 5 463 656 191 346 6.81e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52031.t1 AT5G04940 56.419 592 235 8 70 658 98 669 0.0 684
MS.gene52031.t1 AT5G04940 56.419 592 235 8 70 658 98 669 0.0 684
MS.gene52031.t1 AT1G73100 51.180 678 291 10 6 658 6 668 0.0 683
MS.gene52031.t1 AT1G17770 43.523 579 291 12 98 659 134 693 1.02e-154 463
MS.gene52031.t1 AT2G24740 44.917 541 249 14 129 658 252 754 2.05e-147 446
MS.gene52031.t1 AT2G35160 38.031 589 306 19 80 658 218 757 2.36e-111 352
MS.gene52031.t1 AT2G35160 38.031 589 306 19 80 658 254 793 7.00e-111 352
MS.gene52031.t1 AT2G35160 38.031 589 306 19 80 658 254 793 7.00e-111 352
MS.gene52031.t1 AT2G35160 38.031 589 306 19 80 658 254 793 7.00e-111 352
MS.gene52031.t1 AT2G35160 38.031 589 306 19 80 658 254 793 7.00e-111 352
MS.gene52031.t1 AT4G13460 39.010 505 284 11 139 631 145 637 3.16e-107 338
MS.gene52031.t1 AT4G13460 39.010 505 284 11 139 631 145 637 3.16e-107 338
MS.gene52031.t1 AT2G22740 37.782 532 301 13 139 655 270 786 2.11e-106 340
MS.gene52031.t1 AT2G22740 37.782 532 301 13 139 655 270 786 2.11e-106 340
MS.gene52031.t1 AT2G33290 38.417 518 285 9 139 640 149 648 7.52e-106 335
MS.gene52031.t1 AT2G33290 38.417 518 285 9 139 640 149 648 7.52e-106 335
MS.gene52031.t1 AT2G33290 38.417 518 285 9 139 640 149 648 7.52e-106 335
MS.gene52031.t1 AT2G33290 38.417 518 285 9 139 640 149 648 7.52e-106 335
MS.gene52031.t1 AT5G13960 36.420 486 276 14 192 655 12 486 1.37e-91 293
MS.gene52031.t1 AT5G13960 35.490 510 296 14 168 655 122 620 1.54e-90 294
MS.gene52031.t1 AT2G05900 41.176 221 121 4 212 428 1 216 4.82e-45 163
MS.gene52031.t1 AT2G05900 56.098 82 30 1 577 658 236 311 2.08e-22 99.0
MS.gene52031.t1 AT5G47150 41.589 214 113 5 139 347 118 324 2.49e-41 153
MS.gene52031.t1 AT3G04380 28.012 332 174 8 372 655 117 431 4.30e-36 142
MS.gene52031.t1 AT3G04380 28.012 332 174 8 372 655 144 458 4.47e-36 142
MS.gene52031.t1 AT3G04380 28.012 332 174 8 372 655 128 442 4.60e-36 142
MS.gene52031.t1 AT3G04380 28.012 332 174 8 372 655 117 431 4.78e-36 142
MS.gene52031.t1 AT3G04380 28.012 332 174 8 372 655 144 458 5.76e-36 142
MS.gene52031.t1 AT3G04380 28.012 332 174 8 372 655 101 415 5.89e-36 141
MS.gene52031.t1 AT5G47160 37.549 253 137 8 103 344 166 408 1.85e-34 136
MS.gene52031.t1 AT5G47160 37.549 253 137 8 103 344 166 408 1.85e-34 136
MS.gene52031.t1 AT5G47160 37.549 253 137 8 103 344 166 408 1.85e-34 136
MS.gene52031.t1 AT2G23740 32.288 319 166 15 368 659 1080 1375 3.27e-32 134
MS.gene52031.t1 AT2G23740 32.288 319 166 15 368 659 1087 1382 3.34e-32 134
MS.gene52031.t1 AT2G23740 32.288 319 166 15 368 659 1087 1382 3.34e-32 134
MS.gene52031.t1 AT2G23740 32.288 319 166 15 368 659 1087 1382 3.34e-32 134
MS.gene52031.t1 AT1G04050 30.539 334 161 13 372 655 303 615 1.08e-31 131
MS.gene52031.t1 AT1G04050 31.045 335 160 14 372 656 407 720 1.21e-31 131
MS.gene52031.t1 AT1G04050 31.045 335 160 14 372 656 407 720 1.21e-31 131
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 373 682 1.39e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 373 682 1.39e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 373 682 1.39e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 373 682 1.39e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 304 613 1.49e-28 121
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 393 702 1.57e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 393 702 1.57e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 393 702 1.57e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 393 702 1.57e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 396 705 1.58e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 396 705 1.58e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 416 725 1.62e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 416 725 1.62e-28 122
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 324 633 1.92e-28 121
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 324 633 1.92e-28 121
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 324 633 1.92e-28 121
MS.gene52031.t1 AT5G43990 28.144 334 166 12 372 655 324 633 1.92e-28 121
MS.gene52031.t1 AT3G03750 32.743 226 129 7 435 658 145 349 2.16e-24 105
MS.gene52031.t1 AT2G23740 32.530 249 120 14 368 589 1087 1314 1.71e-20 97.4
MS.gene52031.t1 AT2G23740 32.530 249 120 14 368 589 1087 1314 1.71e-20 97.4
MS.gene52031.t1 AT3G03750 29.464 224 123 7 435 658 145 333 5.90e-18 86.3
MS.gene52031.t1 AT1G77300 30.890 191 98 5 466 656 1008 1164 2.42e-16 84.0
MS.gene52031.t1 AT1G77300 30.890 191 98 5 466 656 1008 1164 3.48e-16 83.6
MS.gene52031.t1 AT4G30860 30.412 194 97 6 463 656 307 462 8.21e-14 74.7
MS.gene52031.t1 AT3G59960 28.333 180 75 6 485 655 112 246 5.00e-12 67.8
MS.gene52031.t1 AT3G59960 28.333 180 75 6 485 655 112 246 5.00e-12 67.8
MS.gene52031.t1 AT3G59960 28.333 180 75 6 485 655 112 246 5.00e-12 67.8
MS.gene52031.t1 AT3G59960 28.333 180 75 6 485 655 112 246 1.67e-11 66.6

Find 168 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGACAAGTATAAGATTT+TGG 0.184217 3.3:-6965622 MS.gene52031:CDS
TCTTCAGGTCAGTATCCTTC+TGG 0.204050 3.3:-6965543 MS.gene52031:CDS
ACAGGTATCAAACTTCTTAT+AGG 0.235001 3.3:+6965591 None:intergenic
CGACTCCACTTCAAGCATTT+AGG 0.258428 3.3:-6965452 MS.gene52031:CDS
CAAGCATTTAGGAGCCCTTT+TGG 0.274971 3.3:-6965441 MS.gene52031:CDS
AGAGTGGAAATATGTGAAAA+AGG 0.306165 3.3:+6964477 None:intergenic
TGCATTAAACTGAATGATTT+CGG 0.306178 3.3:+6964445 None:intergenic
CATGAGTTAACATATGATTA+TGG 0.312052 3.3:-6963797 MS.gene52031:CDS
TTATATTATCAATGGAGTTC+TGG 0.315928 3.3:-6964329 MS.gene52031:CDS
AGAACTCCATTGATAATATA+AGG 0.322628 3.3:+6964331 None:intergenic
TGTATAAAATTCAAGATTCA+TGG 0.343226 3.3:-6964711 MS.gene52031:CDS
TTCTTAGCATTTATAATAAG+AGG 0.346128 3.3:+6963953 None:intergenic
AGCATGTGTCCCTGGCGATT+TGG 0.346957 3.3:-6964389 MS.gene52031:CDS
CGAATGGAAATGTGTGTTAT+CGG 0.357207 3.3:-6965042 MS.gene52031:CDS
CTTCAGGTCAGTATCCTTCT+GGG 0.359790 3.3:-6965542 MS.gene52031:CDS
AACCTAGTGCCTTTGCCGTT+TGG 0.360454 3.3:-6964627 MS.gene52031:CDS
TTTGGTGCTTCAAACCGGTT+TGG 0.365259 3.3:+6964233 None:intergenic
AGGATAAAGGTTGGGGTCTT+CGG 0.367552 3.3:-6964192 MS.gene52031:CDS
TCATAAGGGTAATCTTGCTT+TGG 0.385063 3.3:-6964827 MS.gene52031:CDS
CAAAACAAAGGATAAAGGTT+GGG 0.388648 3.3:-6964200 MS.gene52031:CDS
TTGGTGCTTCAAACCGGTTT+GGG 0.391461 3.3:+6964234 None:intergenic
AATCCTCAAGGTCAATCTTC+AGG 0.392097 3.3:-6965558 MS.gene52031:CDS
TGTTATAATTTATACCGGTC+AGG 0.396575 3.3:-6964896 MS.gene52031:CDS
ACTTCATTGACAAGTGATAC+TGG 0.399879 3.3:+6964520 None:intergenic
TGTGTTTGTTCGAATTCCTT+TGG 0.402301 3.3:+6965119 None:intergenic
GATTGATGCCTTGCATATCC+AGG 0.403598 3.3:-6964995 MS.gene52031:CDS
ACTTGAAAGATTCATAAATA+CGG 0.407062 3.3:+6964047 None:intergenic
CGAACCTGTGTTCCATTCCT+TGG 0.409287 3.3:+6965182 None:intergenic
CAGTACCTGGAGTTGAGATT+GGG 0.418871 3.3:-6965080 MS.gene52031:CDS
ACAGGCTGCCAGAAAACATT+TGG 0.419329 3.3:+6963890 None:intergenic
TTCCATTTGGTGCTTCAAAC+CGG 0.422250 3.3:+6964228 None:intergenic
ATTTGGACTGCTCATGCATT+CGG 0.422721 3.3:-6964372 MS.gene52031:CDS
TACCATTGTCTCTTTGACCT+GGG 0.423334 3.3:+6965277 None:intergenic
TCAGTACCTGGAGTTGAGAT+TGG 0.424381 3.3:-6965081 MS.gene52031:CDS
ATTATAAATGCTAAGAATGT+TGG 0.437154 3.3:-6963947 MS.gene52031:CDS
CATCGCTCTACTTGGCTTTG+CGG 0.438113 3.3:+6965476 None:intergenic
GCTGTTAGCATTGTTTCGTC+AGG 0.439867 3.3:-6964949 MS.gene52031:CDS
GTCTTCAAAACAAAGGATAA+AGG 0.446507 3.3:-6964205 MS.gene52031:CDS
AGAATAAGTCCAGTCCTTGC+AGG 0.449322 3.3:+6964574 None:intergenic
AAGGTTGGGGTCTTCGGTCA+TGG 0.451618 3.3:-6964186 MS.gene52031:CDS
GCTGGTTTCCCTGCAAGGAC+TGG 0.456055 3.3:-6964583 MS.gene52031:CDS
TTACCATTGTCTCTTTGACC+TGG 0.461172 3.3:+6965276 None:intergenic
CGGTTTGCATGCTCAATCGA+TGG 0.470289 3.3:-6965022 MS.gene52031:CDS
CAAAATCTTATACTTGTCAA+TGG 0.476471 3.3:+6965623 None:intergenic
CGATAACACACATTTCCATT+CGG 0.476797 3.3:+6965043 None:intergenic
TATTCTTGCTGACCTCTCCT+CGG 0.477270 3.3:-6964557 MS.gene52031:CDS
AGATCCTCATCCTCTCCAAA+AGG 0.481832 3.3:+6965426 None:intergenic
GTATCATGAGGTCCACCAAA+TGG 0.483316 3.3:+6965504 None:intergenic
ATCCTCACTAGACTCGTTTG+TGG 0.484407 3.3:+6963991 None:intergenic
CTTGAAAGATTCATAAATAC+GGG 0.486596 3.3:+6964048 None:intergenic
GTCAGATCAGAAGCTTCATA+AGG 0.487005 3.3:-6964842 MS.gene52031:CDS
CATGAGCAGTCCAAATCGCC+AGG 0.488074 3.3:+6964379 None:intergenic
GTTGATATGAGTGGTTTAGT+TGG 0.492160 3.3:-6965306 MS.gene52031:CDS
TGTATAATGGAAGAAGGGTT+AGG 0.492317 3.3:-6965672 None:intergenic
TTGTTCTCTTCATATAAGAC+AGG 0.494732 3.3:+6963872 None:intergenic
GCACAATATTAACAACTTCA+CGG 0.500326 3.3:+6965253 None:intergenic
TGCATATCCAGGGTGACCGC+GGG 0.500357 3.3:-6964984 MS.gene52031:CDS
TCACAGCATCTTTGATGCCT+CGG 0.503981 3.3:+6964767 None:intergenic
GGTTTGCATGCTCAATCGAT+GGG 0.505325 3.3:-6965021 MS.gene52031:CDS
TATCATGAGGTCCACCAAAT+GGG 0.505449 3.3:+6965505 None:intergenic
AACCGGTTTGAAGCACCAAA+TGG 0.508329 3.3:-6964230 MS.gene52031:CDS
TCTGTTCAGAAGTGGAAAGC+TGG 0.508734 3.3:-6964601 MS.gene52031:CDS
TCATGGGATCCTATCCGTGC+TGG 0.510420 3.3:-6964169 MS.gene52031:CDS
ATCAAAGATGCTGTGACTCC+AGG 0.511194 3.3:-6964760 MS.gene52031:CDS
GGTGATGTTATAATTTATAC+CGG 0.512209 3.3:-6964901 MS.gene52031:CDS
TATCTTCCCCGCGGTCACCC+TGG 0.516259 3.3:+6964977 None:intergenic
ATTCTTGCTGACCTCTCCTC+GGG 0.517115 3.3:-6964556 MS.gene52031:CDS
TCAAAACAAAGGATAAAGGT+TGG 0.518147 3.3:-6964201 MS.gene52031:CDS
GTGAATTGTATAATGGAAGA+AGG 0.518785 3.3:-6965678 None:intergenic
TCAATGGAGTTCTGGCGAAT+CGG 0.519477 3.3:-6964321 MS.gene52031:CDS
GTATAAAATTCAAGATTCAT+GGG 0.521482 3.3:-6964710 MS.gene52031:CDS
AGGTTGGGGTCTTCGGTCAT+GGG 0.522878 3.3:-6964185 MS.gene52031:CDS
TATAAGTTGATAAGAGTGCC+TGG 0.523531 3.3:-6964652 MS.gene52031:CDS
TTTGCGTGCACTGCTACCCT+CGG 0.525087 3.3:+6963763 None:intergenic
TCAACACTCAGTTCCTCCCC+CGG 0.526455 3.3:-6965649 MS.gene52031:CDS
TGACCGCGGGGAAGATACTT+TGG 0.527412 3.3:-6964971 MS.gene52031:CDS
GGTTTAGTTGGTATAAGCCC+AGG 0.529198 3.3:-6965294 MS.gene52031:CDS
AAACGTACCGATTTAAAAGC+TGG 0.530169 3.3:-6965156 MS.gene52031:CDS
GTTGAAATTCCCACCCTGAC+CGG 0.530593 3.3:+6964882 None:intergenic
TCATATGTTAACTCATGCAT+TGG 0.532861 3.3:+6963803 None:intergenic
CGGCAGCATCACATTCAAGC+CGG 0.533696 3.3:-6965368 MS.gene52031:CDS
GGTAGAAAGAAATGCTTATG+TGG 0.534383 3.3:-6963740 MS.gene52031:CDS
TCAGATCAGAAGCTTCATAA+GGG 0.535931 3.3:-6964841 MS.gene52031:CDS
ACTGCTACCCTCGGTGTGAT+CGG 0.536665 3.3:+6963772 None:intergenic
TGCATGCTCAATCGATGGGG+GGG 0.538668 3.3:-6965017 MS.gene52031:CDS
AAAACAAAGGATAAAGGTTG+GGG 0.538728 3.3:-6964199 MS.gene52031:CDS
GGAGTCGGCATCGCTCTACT+TGG 0.540336 3.3:+6965468 None:intergenic
ATGTTAACTCATGCATTGGT+GGG 0.541447 3.3:+6963807 None:intergenic
GGCAATATTTGTATGACCAA+AGG 0.542268 3.3:-6965135 MS.gene52031:CDS
GGAAAGCTGGTTTCCCTGCA+AGG 0.545796 3.3:-6964588 MS.gene52031:CDS
GACTCTCGGCTCCCGAGGAG+AGG 0.546001 3.3:+6964545 None:intergenic
ATCTCAACTTGTAGATGCCA+AGG 0.547043 3.3:-6965199 MS.gene52031:CDS
ATGCAACATGGAGAAAGGAT+TGG 0.548940 3.3:+6963849 None:intergenic
TTCCAAACGGCAAAGGCACT+AGG 0.550397 3.3:+6964625 None:intergenic
GATCCTCATCCTCTCCAAAA+GGG 0.552939 3.3:+6965427 None:intergenic
AACTTGTAGATGCCAAGGAA+TGG 0.553451 3.3:-6965194 MS.gene52031:CDS
TTTGGAAATCTGTTCAGAAG+TGG 0.553589 3.3:-6964609 MS.gene52031:CDS
ATGTCCCCAATCTCAACTCC+AGG 0.554821 3.3:+6965075 None:intergenic
TCTTAGCATTTATAATAAGA+GGG 0.554977 3.3:+6963954 None:intergenic
GGCAGCATCACATTCAAGCC+GGG 0.555680 3.3:-6965367 MS.gene52031:CDS
GTATTTATGAATCTTTCAAG+TGG 0.556979 3.3:-6964045 MS.gene52031:CDS
GCAAAGGCACTAGGTTGTCC+AGG 0.558915 3.3:+6964634 None:intergenic
TTATACTTGTCAATGGAACC+CGG 0.562427 3.3:+6965630 None:intergenic
GGTCAGATTGAAGAAGCATA+AGG 0.562915 3.3:-6965346 MS.gene52031:CDS
TCACATAGTTGCAGCTGTAG+TGG 0.565201 3.3:-6964418 MS.gene52031:CDS
GCATTTATAATAAGAGGGTG+TGG 0.566087 3.3:+6963959 None:intergenic
CTAAATGCTTGAAGTGGAGT+CGG 0.566439 3.3:+6965453 None:intergenic
GAGAAGTTATCGATAAAGCT+AGG 0.566713 3.3:-6964123 MS.gene52031:CDS
GTTATAATTTATACCGGTCA+GGG 0.567735 3.3:-6964895 MS.gene52031:CDS
TTGCATGCTCAATCGATGGG+GGG 0.569075 3.3:-6965018 MS.gene52031:CDS
CGCAAATAAAAGCACCAGCA+CGG 0.569180 3.3:+6964155 None:intergenic
ATTTCGGATGTCTAAGAGAG+TGG 0.569188 3.3:+6964461 None:intergenic
AAGCCGTTGGTTCATGAATG+TGG 0.569854 3.3:-6964298 MS.gene52031:CDS
TTTGCATGCTCAATCGATGG+GGG 0.571740 3.3:-6965019 MS.gene52031:CDS
GAGGATCTCAATGACAATGA+TGG 0.572099 3.3:-6965411 MS.gene52031:CDS
TATGCTTCTTCAATCTGACC+CGG 0.573333 3.3:+6965349 None:intergenic
TATGTTAACTCATGCATTGG+TGG 0.574648 3.3:+6963806 None:intergenic
GTCGCTTCTTCTAGTAACTT+AGG 0.574919 3.3:+6964013 None:intergenic
TCGAACAAACACAGCGAAGA+GGG 0.575127 3.3:-6965109 MS.gene52031:CDS
TTGCATATCCAGGGTGACCG+CGG 0.575259 3.3:-6964985 MS.gene52031:CDS
GTTTGCATGCTCAATCGATG+GGG 0.580565 3.3:-6965020 MS.gene52031:CDS
ATAAAAGCACCAGCACGGAT+AGG 0.584030 3.3:+6964160 None:intergenic
AACAGATTTCCAAACGGCAA+AGG 0.589578 3.3:+6964618 None:intergenic
GGGCTCCTAAATGCTTGAAG+TGG 0.589829 3.3:+6965447 None:intergenic
TTAAGTCAGCTTGTACAAGA+AGG 0.590145 3.3:-6964100 MS.gene52031:CDS
TGAATTGTATAATGGAAGAA+GGG 0.593495 3.3:-6965677 None:intergenic
AAGTGATACTGGAAGACTCT+CGG 0.599204 3.3:+6964531 None:intergenic
CTTCTGAACAGATTTCCAAA+CGG 0.599772 3.3:+6964612 None:intergenic
TATACTTGTCAATGGAACCC+GGG 0.600215 3.3:+6965631 None:intergenic
TGACCTGAAGATTGACCTTG+AGG 0.600787 3.3:+6965555 None:intergenic
GAATAAGTCCAGTCCTTGCA+GGG 0.601962 3.3:+6964575 None:intergenic
CATTTGATGCGCTAAGACGA+AGG 0.602005 3.3:-6965224 MS.gene52031:CDS
AAGAGGGTAGGATCAGTACC+TGG 0.602661 3.3:-6965093 MS.gene52031:CDS
GGGCCACATTCATGAACCAA+CGG 0.610204 3.3:+6964295 None:intergenic
TCTGGCGAATCGGAAGCCGT+TGG 0.612003 3.3:-6964311 MS.gene52031:CDS
TGCTAAGAATGTTGGAAATG+TGG 0.613562 3.3:-6963939 MS.gene52031:CDS
GATGTTCATGTTGATATGAG+TGG 0.616806 3.3:-6965315 MS.gene52031:CDS
TGGAAGACTCTCGGCTCCCG+AGG 0.617476 3.3:+6964540 None:intergenic
AGCCCAGGTCAAAGAGACAA+TGG 0.619161 3.3:-6965279 MS.gene52031:CDS
TAATTTATACCGGTCAGGGT+GGG 0.620279 3.3:-6964891 MS.gene52031:CDS
TTAGGAAAACACTGACATGT+GGG 0.620821 3.3:+6964274 None:intergenic
AATGGAAGTCTTCAAAACAA+AGG 0.626541 3.3:-6964212 MS.gene52031:CDS
TACGACGATGAAGCTGAGGA+TGG 0.627250 3.3:-6964922 MS.gene52031:CDS
GCGGTCACCCTGGATATGCA+AGG 0.632039 3.3:+6964987 None:intergenic
ACAAACACAGCGAAGAGGGT+AGG 0.634440 3.3:-6965105 MS.gene52031:CDS
CTACAGCTGCAACTATGTGA+AGG 0.634477 3.3:+6964421 None:intergenic
ATACTTGTCAATGGAACCCG+GGG 0.636158 3.3:+6965632 None:intergenic
ATTGATGCCTTGCATATCCA+GGG 0.637842 3.3:-6964994 MS.gene52031:CDS
GTTAGGAAAACACTGACATG+TGG 0.639912 3.3:+6964273 None:intergenic
GATGCCAAGGAATGGAACAC+AGG 0.640965 3.3:-6965186 MS.gene52031:CDS
AGAATACGACGATGAAGCTG+AGG 0.645222 3.3:-6964926 MS.gene52031:CDS
TTCGAACAAACACAGCGAAG+AGG 0.646517 3.3:-6965110 MS.gene52031:CDS
TTTGCGGTTGAAGTATCATG+AGG 0.649080 3.3:+6965492 None:intergenic
GAGGGTAGCAGTGCACGCAA+AGG 0.654567 3.3:-6963761 MS.gene52031:CDS
TATGGTTCCGATCACACCGA+GGG 0.656242 3.3:-6963779 MS.gene52031:CDS
AGTACCTGGAGTTGAGATTG+GGG 0.657916 3.3:-6965079 MS.gene52031:CDS
TCATGCATTCGGAGAAACGA+AGG 0.659918 3.3:-6964361 MS.gene52031:CDS
ATAATTTATACCGGTCAGGG+TGG 0.675305 3.3:-6964892 MS.gene52031:CDS
TGTGGATCATCAAACTGCCG+CGG 0.682422 3.3:-6963722 MS.gene52031:CDS
GACCACAAACGAGTCTAGTG+AGG 0.682671 3.3:-6963993 MS.gene52031:CDS
ATGAGCAGTCCAAATCGCCA+GGG 0.685642 3.3:+6964380 None:intergenic
TAGGAAAACACTGACATGTG+GGG 0.688446 3.3:+6964275 None:intergenic
GCATATCCAGGGTGACCGCG+GGG 0.702296 3.3:-6964983 MS.gene52031:CDS
AATGTCAAGTAAAAGAACCG+CGG 0.738828 3.3:+6963705 None:intergenic
AATGAAATAAGAGTCATCCG+AGG 0.740934 3.3:-6964784 MS.gene52031:CDS
CAGCCAAAGTATCTTCCCCG+CGG 0.752822 3.3:+6964968 None:intergenic
TTATGGTTCCGATCACACCG+AGG 0.773964 3.3:-6963780 MS.gene52031:CDS
TACTTGTCAATGGAACCCGG+GGG 0.840303 3.3:+6965633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGAAAGATTCATAAATA+CGG + chr3.3:6965331-6965350 None:intergenic 20.0%
!! ATTATAAATGCTAAGAATGT+TGG - chr3.3:6965428-6965447 MS.gene52031:CDS 20.0%
!! GTATAAAATTCAAGATTCAT+GGG - chr3.3:6964665-6964684 MS.gene52031:CDS 20.0%
!! TCTTAGCATTTATAATAAGA+GGG + chr3.3:6965424-6965443 None:intergenic 20.0%
!! TGTATAAAATTCAAGATTCA+TGG - chr3.3:6964664-6964683 MS.gene52031:CDS 20.0%
!! TTCTTAGCATTTATAATAAG+AGG + chr3.3:6965425-6965444 None:intergenic 20.0%
!!! GATTTTCCTTATATTATCAA+TGG - chr3.3:6965038-6965057 MS.gene52031:CDS 20.0%
! CAAAATCTTATACTTGTCAA+TGG + chr3.3:6963755-6963774 None:intergenic 25.0%
! CATGAGTTAACATATGATTA+TGG - chr3.3:6965578-6965597 MS.gene52031:CDS 25.0%
! CTTGAAAGATTCATAAATAC+GGG + chr3.3:6965330-6965349 None:intergenic 25.0%
! GGTGATGTTATAATTTATAC+CGG - chr3.3:6964474-6964493 MS.gene52031:CDS 25.0%
! GTATTTATGAATCTTTCAAG+TGG - chr3.3:6965330-6965349 MS.gene52031:CDS 25.0%
! TGCATTAAACTGAATGATTT+CGG + chr3.3:6964933-6964952 None:intergenic 25.0%
! TTATATTATCAATGGAGTTC+TGG - chr3.3:6965046-6965065 MS.gene52031:CDS 25.0%
!! AATATTGCCAGCTTTTAAAT+CGG + chr3.3:6964229-6964248 None:intergenic 25.0%
!! AGAACTCCATTGATAATATA+AGG + chr3.3:6965047-6965066 None:intergenic 25.0%
!! CATTGACAAGTATAAGATTT+TGG - chr3.3:6963753-6963772 MS.gene52031:CDS 25.0%
AAAAAATGCAACATGGAGAA+AGG + chr3.3:6965534-6965553 None:intergenic 30.0%
AAAACAAAGGATAAAGGTTG+GGG - chr3.3:6965176-6965195 MS.gene52031:CDS 30.0%
AATGGAAGTCTTCAAAACAA+AGG - chr3.3:6965163-6965182 MS.gene52031:CDS 30.0%
ACAGGTATCAAACTTCTTAT+AGG + chr3.3:6963787-6963806 None:intergenic 30.0%
AGAGTGGAAATATGTGAAAA+AGG + chr3.3:6964901-6964920 None:intergenic 30.0%
CAAAACAAAGGATAAAGGTT+GGG - chr3.3:6965175-6965194 MS.gene52031:CDS 30.0%
GCAAAAATCTATGTCTATGA+TGG - chr3.3:6964639-6964658 MS.gene52031:CDS 30.0%
GCACAATATTAACAACTTCA+CGG + chr3.3:6964125-6964144 None:intergenic 30.0%
GTCTTCAAAACAAAGGATAA+AGG - chr3.3:6965170-6965189 MS.gene52031:CDS 30.0%
GTTATAATTTATACCGGTCA+GGG - chr3.3:6964480-6964499 MS.gene52031:CDS 30.0%
TCAAAACAAAGGATAAAGGT+TGG - chr3.3:6965174-6965193 MS.gene52031:CDS 30.0%
TCAATGCAAAAAATGCAACA+TGG + chr3.3:6965541-6965560 None:intergenic 30.0%
TCATATGTTAACTCATGCAT+TGG + chr3.3:6965575-6965594 None:intergenic 30.0%
TGTTATAATTTATACCGGTC+AGG - chr3.3:6964479-6964498 MS.gene52031:CDS 30.0%
TTGTTCTCTTCATATAAGAC+AGG + chr3.3:6965506-6965525 None:intergenic 30.0%
! TTTTAGCAACAAAAGAAGTG+CGG - chr3.3:6963987-6964006 MS.gene52031:CDS 30.0%
!!! GTTTGATACCTGTTTTTTCA+AGG - chr3.3:6963794-6963813 MS.gene52031:CDS 30.0%
!!! TTGTTTTGAAGACTTCCATT+TGG + chr3.3:6965163-6965182 None:intergenic 30.0%
AAAAATCGAGTATCCCAAAC+CGG - chr3.3:6965128-6965147 MS.gene52031:CDS 35.0%
AATGAAATAAGAGTCATCCG+AGG - chr3.3:6964591-6964610 MS.gene52031:CDS 35.0%
ACTTCATTGACAAGTGATAC+TGG + chr3.3:6964858-6964877 None:intergenic 35.0%
CGAATGGAAATGTGTGTTAT+CGG - chr3.3:6964333-6964352 MS.gene52031:CDS 35.0%
CGATAACACACATTTCCATT+CGG + chr3.3:6964335-6964354 None:intergenic 35.0%
CTTCTGAACAGATTTCCAAA+CGG + chr3.3:6964766-6964785 None:intergenic 35.0%
GAGAAGTTATCGATAAAGCT+AGG - chr3.3:6965252-6965271 MS.gene52031:CDS 35.0%
GATGTTCATGTTGATATGAG+TGG - chr3.3:6964060-6964079 MS.gene52031:CDS 35.0%
GCATTTATAATAAGAGGGTG+TGG + chr3.3:6965419-6965438 None:intergenic 35.0%
GGCAATATTTGTATGACCAA+AGG - chr3.3:6964240-6964259 MS.gene52031:CDS 35.0%
GGTAGAAAGAAATGCTTATG+TGG - chr3.3:6965635-6965654 MS.gene52031:CDS 35.0%
GTTGATATGAGTGGTTTAGT+TGG - chr3.3:6964069-6964088 MS.gene52031:CDS 35.0%
TATGTTAACTCATGCATTGG+TGG + chr3.3:6965572-6965591 None:intergenic 35.0%
TCAGATCAGAAGCTTCATAA+GGG - chr3.3:6964534-6964553 MS.gene52031:CDS 35.0%
TCATAAGGGTAATCTTGCTT+TGG - chr3.3:6964548-6964567 MS.gene52031:CDS 35.0%
TGAGGATTCCTTGAAAAAAC+AGG + chr3.3:6963805-6963824 None:intergenic 35.0%
TGCTAAGAATGTTGGAAATG+TGG - chr3.3:6965436-6965455 MS.gene52031:CDS 35.0%
TGGAAATATGTGAAAAAGGC+AGG + chr3.3:6964897-6964916 None:intergenic 35.0%
TGTGTTTGTTCGAATTCCTT+TGG + chr3.3:6964259-6964278 None:intergenic 35.0%
TTAAGTCAGCTTGTACAAGA+AGG - chr3.3:6965275-6965294 MS.gene52031:CDS 35.0%
TTAGGAAAACACTGACATGT+GGG + chr3.3:6965104-6965123 None:intergenic 35.0%
TTATACTTGTCAATGGAACC+CGG + chr3.3:6963748-6963767 None:intergenic 35.0%
TTTGGAAATCTGTTCAGAAG+TGG - chr3.3:6964766-6964785 MS.gene52031:CDS 35.0%
! ATGTTAACTCATGCATTGGT+GGG + chr3.3:6965571-6965590 None:intergenic 35.0%
! GATACTCGATTTTTGCAGTT+AGG + chr3.3:6965122-6965141 None:intergenic 35.0%
! GGACATTTTCTTTTTCCGAA+TGG - chr3.3:6964317-6964336 MS.gene52031:CDS 35.0%
! TAGACATAGATTTTTGCACC+TGG + chr3.3:6964636-6964655 None:intergenic 35.0%
! TCATGGGTTGAAAAAGCAAA+AGG - chr3.3:6964681-6964700 MS.gene52031:CDS 35.0%
!! AAACGTACCGATTTAAAAGC+TGG - chr3.3:6964219-6964238 MS.gene52031:CDS 35.0%
!! TATAAGTTGATAAGAGTGCC+TGG - chr3.3:6964723-6964742 MS.gene52031:CDS 35.0%
!! TTTTCTCCGTTTTTCCCATT+TGG - chr3.3:6963856-6963875 MS.gene52031:CDS 35.0%
!!! GTTTTTTCAAGGAATCCTCA+AGG - chr3.3:6963805-6963824 MS.gene52031:CDS 35.0%
AAAAACGGAGAAAACCCAGA+AGG + chr3.3:6963850-6963869 None:intergenic 40.0%
AACAGATTTCCAAACGGCAA+AGG + chr3.3:6964760-6964779 None:intergenic 40.0%
AACTTGTAGATGCCAAGGAA+TGG - chr3.3:6964181-6964200 MS.gene52031:CDS 40.0%
AAGTGATACTGGAAGACTCT+CGG + chr3.3:6964847-6964866 None:intergenic 40.0%
AATCCTCAAGGTCAATCTTC+AGG - chr3.3:6963817-6963836 MS.gene52031:CDS 40.0%
ATAATTTATACCGGTCAGGG+TGG - chr3.3:6964483-6964502 MS.gene52031:CDS 40.0%
ATCTCAACTTGTAGATGCCA+AGG - chr3.3:6964176-6964195 MS.gene52031:CDS 40.0%
ATGCAACATGGAGAAAGGAT+TGG + chr3.3:6965529-6965548 None:intergenic 40.0%
ATTGATGCCTTGCATATCCA+GGG - chr3.3:6964381-6964400 MS.gene52031:CDS 40.0%
ATTTCGGATGTCTAAGAGAG+TGG + chr3.3:6964917-6964936 None:intergenic 40.0%
ATTTGGACTGCTCATGCATT+CGG - chr3.3:6965003-6965022 MS.gene52031:CDS 40.0%
CTAAATGCTTGAAGTGGAGT+CGG + chr3.3:6963925-6963944 None:intergenic 40.0%
GAGGATCTCAATGACAATGA+TGG - chr3.3:6963964-6963983 MS.gene52031:CDS 40.0%
GTCAGATCAGAAGCTTCATA+AGG - chr3.3:6964533-6964552 MS.gene52031:CDS 40.0%
GTCGCTTCTTCTAGTAACTT+AGG + chr3.3:6965365-6965384 None:intergenic 40.0%
GTTAGGAAAACACTGACATG+TGG + chr3.3:6965105-6965124 None:intergenic 40.0%
GTTGAAAAAGCAAAAGGAGG+CGG - chr3.3:6964687-6964706 MS.gene52031:CDS 40.0%
TAATTTATACCGGTCAGGGT+GGG - chr3.3:6964484-6964503 MS.gene52031:CDS 40.0%
TACCATTGTCTCTTTGACCT+GGG + chr3.3:6964101-6964120 None:intergenic 40.0%
TAGGAAAACACTGACATGTG+GGG + chr3.3:6965103-6965122 None:intergenic 40.0%
TATACTTGTCAATGGAACCC+GGG + chr3.3:6963747-6963766 None:intergenic 40.0%
TATCATGAGGTCCACCAAAT+GGG + chr3.3:6963873-6963892 None:intergenic 40.0%
TATGCTTCTTCAATCTGACC+CGG + chr3.3:6964029-6964048 None:intergenic 40.0%
TTACCATTGTCTCTTTGACC+TGG + chr3.3:6964102-6964121 None:intergenic 40.0%
! GGTCAGATTGAAGAAGCATA+AGG - chr3.3:6964029-6964048 MS.gene52031:CDS 40.0%
! GTTGCTCTCCAAATGTTTTC+TGG - chr3.3:6965477-6965496 MS.gene52031:CDS 40.0%
! TGGGTTGAAAAAGCAAAAGG+AGG - chr3.3:6964684-6964703 MS.gene52031:CDS 40.0%
! TTTGCGGTTGAAGTATCATG+AGG + chr3.3:6963886-6963905 None:intergenic 40.0%
!! GCTTTTATTTGCGAGTATGC+AGG - chr3.3:6965230-6965249 MS.gene52031:CDS 40.0%
!! TTCCATTTGGTGCTTCAAAC+CGG + chr3.3:6965150-6965169 None:intergenic 40.0%
ACAGGCTGCCAGAAAACATT+TGG + chr3.3:6965488-6965507 None:intergenic 45.0%
AGAATAAGTCCAGTCCTTGC+AGG + chr3.3:6964804-6964823 None:intergenic 45.0%
AGAATACGACGATGAAGCTG+AGG - chr3.3:6964449-6964468 MS.gene52031:CDS 45.0%
AGATCCTCATCCTCTCCAAA+AGG + chr3.3:6963952-6963971 None:intergenic 45.0%
AGGATAAAGGTTGGGGTCTT+CGG - chr3.3:6965183-6965202 MS.gene52031:CDS 45.0%
AGTACCTGGAGTTGAGATTG+GGG - chr3.3:6964296-6964315 MS.gene52031:CDS 45.0%
ATACTTGTCAATGGAACCCG+GGG + chr3.3:6963746-6963765 None:intergenic 45.0%
ATCAAAGATGCTGTGACTCC+AGG - chr3.3:6964615-6964634 MS.gene52031:CDS 45.0%
ATCCTCACTAGACTCGTTTG+TGG + chr3.3:6965387-6965406 None:intergenic 45.0%
CAGTACCTGGAGTTGAGATT+GGG - chr3.3:6964295-6964314 MS.gene52031:CDS 45.0%
CATTTGATGCGCTAAGACGA+AGG - chr3.3:6964151-6964170 MS.gene52031:CDS 45.0%
CGACTCCACTTCAAGCATTT+AGG - chr3.3:6963923-6963942 MS.gene52031:CDS 45.0%
CTACAGCTGCAACTATGTGA+AGG + chr3.3:6964957-6964976 None:intergenic 45.0%
CTTCAGGTCAGTATCCTTCT+GGG - chr3.3:6963833-6963852 MS.gene52031:CDS 45.0%
GAATAAGTCCAGTCCTTGCA+GGG + chr3.3:6964803-6964822 None:intergenic 45.0%
GATCCTCATCCTCTCCAAAA+GGG + chr3.3:6963951-6963970 None:intergenic 45.0%
GATTGATGCCTTGCATATCC+AGG - chr3.3:6964380-6964399 MS.gene52031:CDS 45.0%
GCTGTTAGCATTGTTTCGTC+AGG - chr3.3:6964426-6964445 MS.gene52031:CDS 45.0%
GGTCCACCAAATGGGAAAAA+CGG + chr3.3:6963865-6963884 None:intergenic 45.0%
GGTTTGCATGCTCAATCGAT+GGG - chr3.3:6964354-6964373 MS.gene52031:CDS 45.0%
GTATCATGAGGTCCACCAAA+TGG + chr3.3:6963874-6963893 None:intergenic 45.0%
GTTTGCATGCTCAATCGATG+GGG - chr3.3:6964355-6964374 MS.gene52031:CDS 45.0%
TATTCTTGCTGACCTCTCCT+CGG - chr3.3:6964818-6964837 MS.gene52031:CDS 45.0%
TCACAGCATCTTTGATGCCT+CGG + chr3.3:6964611-6964630 None:intergenic 45.0%
TCACATAGTTGCAGCTGTAG+TGG - chr3.3:6964957-6964976 MS.gene52031:CDS 45.0%
TCAGTACCTGGAGTTGAGAT+TGG - chr3.3:6964294-6964313 MS.gene52031:CDS 45.0%
TCATGCATTCGGAGAAACGA+AGG - chr3.3:6965014-6965033 MS.gene52031:CDS 45.0%
TCGAACAAACACAGCGAAGA+GGG - chr3.3:6964266-6964285 MS.gene52031:CDS 45.0%
TCTGTTCAGAAGTGGAAAGC+TGG - chr3.3:6964774-6964793 MS.gene52031:CDS 45.0%
TCTTCAGGTCAGTATCCTTC+TGG - chr3.3:6963832-6963851 MS.gene52031:CDS 45.0%
TGACCTGAAGATTGACCTTG+AGG + chr3.3:6963823-6963842 None:intergenic 45.0%
TTCGAACAAACACAGCGAAG+AGG - chr3.3:6964265-6964284 MS.gene52031:CDS 45.0%
TTTGCATGCTCAATCGATGG+GGG - chr3.3:6964356-6964375 MS.gene52031:CDS 45.0%
! CAAGCATTTAGGAGCCCTTT+TGG - chr3.3:6963934-6963953 MS.gene52031:CDS 45.0%
! GGTAAAAAAGCATGTGTCCC+TGG - chr3.3:6964978-6964997 MS.gene52031:CDS 45.0%
! GGTTTAGTTGGTATAAGCCC+AGG - chr3.3:6964081-6964100 MS.gene52031:CDS 45.0%
! TCAATGGAGTTCTGGCGAAT+CGG - chr3.3:6965054-6965073 MS.gene52031:CDS 45.0%
! TTGGTGCTTCAAACCGGTTT+GGG + chr3.3:6965144-6965163 None:intergenic 45.0%
!! AACCGGTTTGAAGCACCAAA+TGG - chr3.3:6965145-6965164 MS.gene52031:CDS 45.0%
!! AAGCCGTTGGTTCATGAATG+TGG - chr3.3:6965077-6965096 MS.gene52031:CDS 45.0%
!! ATAAAAGCACCAGCACGGAT+AGG + chr3.3:6965218-6965237 None:intergenic 45.0%
!! ATTTAGGAGCCCTTTTGGAG+AGG - chr3.3:6963939-6963958 MS.gene52031:CDS 45.0%
!! CGCAAATAAAAGCACCAGCA+CGG + chr3.3:6965223-6965242 None:intergenic 45.0%
!! TCTCCGTTTTTCCCATTTGG+TGG - chr3.3:6963859-6963878 MS.gene52031:CDS 45.0%
!! TTTGGTGCTTCAAACCGGTT+TGG + chr3.3:6965145-6965164 None:intergenic 45.0%
AACCTAGTGCCTTTGCCGTT+TGG - chr3.3:6964748-6964767 MS.gene52031:CDS 50.0%
AAGAGGGTAGGATCAGTACC+TGG - chr3.3:6964282-6964301 MS.gene52031:CDS 50.0%
ACAAACACAGCGAAGAGGGT+AGG - chr3.3:6964270-6964289 MS.gene52031:CDS 50.0%
AGCCCAGGTCAAAGAGACAA+TGG - chr3.3:6964096-6964115 MS.gene52031:CDS 50.0%
ATGAGCAGTCCAAATCGCCA+GGG + chr3.3:6964998-6965017 None:intergenic 50.0%
ATGTCCCCAATCTCAACTCC+AGG + chr3.3:6964303-6964322 None:intergenic 50.0%
ATTCTTGCTGACCTCTCCTC+GGG - chr3.3:6964819-6964838 MS.gene52031:CDS 50.0%
CGAACCTGTGTTCCATTCCT+TGG + chr3.3:6964196-6964215 None:intergenic 50.0%
CGGTTTGCATGCTCAATCGA+TGG - chr3.3:6964353-6964372 MS.gene52031:CDS 50.0%
GAAAAAGCAAAAGGAGGCGG+TGG - chr3.3:6964690-6964709 MS.gene52031:CDS 50.0%
GACCACAAACGAGTCTAGTG+AGG - chr3.3:6965382-6965401 MS.gene52031:CDS 50.0%
GATGCCAAGGAATGGAACAC+AGG - chr3.3:6964189-6964208 MS.gene52031:CDS 50.0%
GGGCCACATTCATGAACCAA+CGG + chr3.3:6965083-6965102 None:intergenic 50.0%
GGGCTCCTAAATGCTTGAAG+TGG + chr3.3:6963931-6963950 None:intergenic 50.0%
GTTGAAATTCCCACCCTGAC+CGG + chr3.3:6964496-6964515 None:intergenic 50.0%
TACGACGATGAAGCTGAGGA+TGG - chr3.3:6964453-6964472 MS.gene52031:CDS 50.0%
TACTTGTCAATGGAACCCGG+GGG + chr3.3:6963745-6963764 None:intergenic 50.0%
TATGGTTCCGATCACACCGA+GGG - chr3.3:6965596-6965615 MS.gene52031:CDS 50.0%
TGTGGATCATCAAACTGCCG+CGG - chr3.3:6965653-6965672 MS.gene52031:CDS 50.0%
TTATGGTTCCGATCACACCG+AGG - chr3.3:6965595-6965614 MS.gene52031:CDS 50.0%
TTGCATGCTCAATCGATGGG+GGG - chr3.3:6964357-6964376 MS.gene52031:CDS 50.0%
!! CATCGCTCTACTTGGCTTTG+CGG + chr3.3:6963902-6963921 None:intergenic 50.0%
!! TTCCAAACGGCAAAGGCACT+AGG + chr3.3:6964753-6964772 None:intergenic 50.0%
AAGGTTGGGGTCTTCGGTCA+TGG - chr3.3:6965189-6965208 MS.gene52031:CDS 55.0%
AGCATGTGTCCCTGGCGATT+TGG - chr3.3:6964986-6965005 MS.gene52031:CDS 55.0%
AGGTTGGGGTCTTCGGTCAT+GGG - chr3.3:6965190-6965209 MS.gene52031:CDS 55.0%
CATGAGCAGTCCAAATCGCC+AGG + chr3.3:6964999-6965018 None:intergenic 55.0%
CGGCAGCATCACATTCAAGC+CGG - chr3.3:6964007-6964026 MS.gene52031:CDS 55.0%
GGCAGCATCACATTCAAGCC+GGG - chr3.3:6964008-6964027 MS.gene52031:CDS 55.0%
TCAACACTCAGTTCCTCCCC+CGG - chr3.3:6963726-6963745 MS.gene52031:CDS 55.0%
TCATGGGATCCTATCCGTGC+TGG - chr3.3:6965206-6965225 MS.gene52031:CDS 55.0%
TGACCGCGGGGAAGATACTT+TGG - chr3.3:6964404-6964423 MS.gene52031:CDS 55.0%
TGCATGCTCAATCGATGGGG+GGG - chr3.3:6964358-6964377 MS.gene52031:CDS 55.0%
TTGCATATCCAGGGTGACCG+CGG - chr3.3:6964390-6964409 MS.gene52031:CDS 55.0%
TTTGCGTGCACTGCTACCCT+CGG + chr3.3:6965615-6965634 None:intergenic 55.0%
! ACTGCTACCCTCGGTGTGAT+CGG + chr3.3:6965606-6965625 None:intergenic 55.0%
! CAGCCAAAGTATCTTCCCCG+CGG + chr3.3:6964410-6964429 None:intergenic 55.0%
! GGAAAGCTGGTTTCCCTGCA+AGG - chr3.3:6964787-6964806 MS.gene52031:CDS 55.0%
!! GAGCCCTTTTGGAGAGGATG+AGG - chr3.3:6963945-6963964 MS.gene52031:CDS 55.0%
!! GCAAAGGCACTAGGTTGTCC+AGG + chr3.3:6964744-6964763 None:intergenic 55.0%
CAACACTCAGTTCCTCCCCC+GGG - chr3.3:6963727-6963746 MS.gene52031:CDS 60.0%
GAGGGTAGCAGTGCACGCAA+AGG - chr3.3:6965614-6965633 MS.gene52031:CDS 60.0%
GCGGTCACCCTGGATATGCA+AGG + chr3.3:6964391-6964410 None:intergenic 60.0%
GGAGTCGGCATCGCTCTACT+TGG + chr3.3:6963910-6963929 None:intergenic 60.0%
TCTGGCGAATCGGAAGCCGT+TGG - chr3.3:6965064-6965083 MS.gene52031:CDS 60.0%
TGCATATCCAGGGTGACCGC+GGG - chr3.3:6964391-6964410 MS.gene52031:CDS 60.0%
TTGTCAATGGAACCCGGGGG+AGG + chr3.3:6963742-6963761 None:intergenic 60.0%
! GCTGGTTTCCCTGCAAGGAC+TGG - chr3.3:6964792-6964811 MS.gene52031:CDS 60.0%
GCATATCCAGGGTGACCGCG+GGG - chr3.3:6964392-6964411 MS.gene52031:CDS 65.0%
TATCTTCCCCGCGGTCACCC+TGG + chr3.3:6964401-6964420 None:intergenic 65.0%
TGGAAGACTCTCGGCTCCCG+AGG + chr3.3:6964838-6964857 None:intergenic 65.0%
GACTCTCGGCTCCCGAGGAG+AGG + chr3.3:6964833-6964852 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 6963709 6965688 6963709 ID=MS.gene52031
chr3.3 mRNA 6963709 6965688 6963709 ID=MS.gene52031.t1;Parent=MS.gene52031
chr3.3 exon 6963709 6965688 6963709 ID=MS.gene52031.t1.exon1;Parent=MS.gene52031.t1
chr3.3 CDS 6963709 6965688 6963709 ID=cds.MS.gene52031.t1;Parent=MS.gene52031.t1
Gene Sequence

>MS.gene52031

ATGGAAGAAGGGTTAGGTCAACACTCAGTTCCTCCCCCGGGTTCCATTGACAAGTATAAGATTTTGGATATTAAGCCTATAAGAAGTTTGATACCTGTTTTTTCAAGGAATCCTCAAGGTCAATCTTCAGGTCAGTATCCTTCTGGGTTTTCTCCGTTTTTCCCATTTGGTGGACCTCATGATACTTCAACCGCAAAGCCAAGTAGAGCGATGCCGACTCCACTTCAAGCATTTAGGAGCCCTTTTGGAGAGGATGAGGATCTCAATGACAATGATGGTTTTAGCAACAAAAGAAGTGCGGCAGCATCACATTCAAGCCGGGTCAGATTGAAGAAGCATAAGGTATATAATGATGTTCATGTTGATATGAGTGGTTTAGTTGGTATAAGCCCAGGTCAAAGAGACAATGGTAACCGTGAAGTTGTTAATATTGTGCTCATGACATTTGATGCGCTAAGACGAAGGCTATCTCAACTTGTAGATGCCAAGGAATGGAACACAGGTTCGATCAAACGTACCGATTTAAAAGCTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACACAGCGAAGAGGGTAGGATCAGTACCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTATCGGTTTGCATGCTCAATCGATGGGGGGGATTGATGCCTTGCATATCCAGGGTGACCGCGGGGAAGATACTTTGGCTGTTAGCATTGTTTCGTCAGGAGAATACGACGATGAAGCTGAGGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGATAAGCATGTGTCAGATCAGAAGCTTCATAAGGGTAATCTTGCTTTGGATAGAAGTTCACGAACACACAATGAAATAAGAGTCATCCGAGGCATCAAAGATGCTGTGACTCCAGGTGCAAAAATCTATGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGGTTGAAAAAGCAAAAGGAGGCGGTGGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAACCTAGTGCCTTTGCCGTTTGGAAATCTGTTCAGAAGTGGAAAGCTGGTTTCCCTGCAAGGACTGGACTTATTCTTGCTGACCTCTCCTCGGGAGCCGAGAGTCTTCCAGTATCACTTGTCAATGAAGTCGATAACGTTAAGTCACCTGCCTTTTTCACATATTTCCACTCTCTTAGACATCCGAAATCATTCAGTTTAATGCAGCCTTCACATAGTTGCAGCTGTAGTGGTAAAAAAGCATGTGTCCCTGGCGATTTGGACTGCTCATGCATTCGGAGAAACGAAGGTGATTTTCCTTATATTATCAATGGAGTTCTGGCGAATCGGAAGCCGTTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTGAAGCACCAAATGGAAGTCTTCAAAACAAAGGATAAAGGTTGGGGTCTTCGGTCATGGGATCCTATCCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATCGATAAAGCTAGGTTAAGTCAGCTTGTACAAGAAGGAGATACTGATGAGTATGTTTTCGATACAACCCGTATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGTTACTAGAAGAAGCGACCACAAACGAGTCTAGTGAGGATTATGCTTTGCCACACCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCTCCAAATGTTTTCTGGCAGCCTGTCTTATATGAAGAGAACAACCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATCCCACCAATGCATGAGTTAACATATGATTATGGTTCCGATCACACCGAGGGTAGCAGTGCACGCAAAGGTAGAAAGAAATGCTTATGTGGATCATCAAACTGCCGCGGTTCTTTTACTTGA
Protein sequence

>MS.gene52031.t1

MEEGLGQHSVPPPGSIDKYKILDIKPIRSLIPVFSRNPQGQSSGQYPSGFSPFFPFGGPHDTSTAKPSRAMPTPLQAFRSPFGEDEDLNDNDGFSNKRSAAASHSSRVRLKKHKVYNDVHVDMSGLVGISPGQRDNGNREVVNIVLMTFDALRRRLSQLVDAKEWNTGSIKRTDLKAGNICMTKGIRTNTAKRVGSVPGVEIGDIFFFRMEMCVIGLHAQSMGGIDALHIQGDRGEDTLAVSIVSSGEYDDEAEDGDVIIYTGQGGNFNKKDKHVSDQKLHKGNLALDRSSRTHNEIRVIRGIKDAVTPGAKIYVYDGLYKIQDSWVEKAKGGGGLFKYKLIRVPGQPSAFAVWKSVQKWKAGFPARTGLILADLSSGAESLPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHSCSCSGKKACVPGDLDCSCIRRNEGDFPYIINGVLANRKPLVHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVQEGDTDEYVFDTTRIYESFKWNYEPKLLEEATTNESSEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMHELTYDYGSDHTEGSSARKGRKKCLCGSSNCRGSFT