AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56393

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56393.t1 MTR_3g011440 96.241 665 21 3 1 662 1 664 0.0 1327
MS.gene56393.t1 MTR_8g042750 59.797 689 230 8 15 661 4 687 0.0 847
MS.gene56393.t1 MTR_7g088370 46.757 740 279 20 1 661 1 704 0.0 629
MS.gene56393.t1 MTR_5g013420 41.450 538 294 13 125 659 567 1086 8.27e-122 388
MS.gene56393.t1 MTR_5g013420 41.296 540 296 13 125 661 567 1088 8.93e-122 388
MS.gene56393.t1 MTR_4g010830 39.630 540 304 14 125 661 459 979 1.51e-112 361
MS.gene56393.t1 MTR_8g070075 40.546 476 251 12 172 631 290 749 2.68e-110 350
MS.gene56393.t1 MTR_8g070070 41.239 468 255 12 174 631 299 756 1.91e-109 348
MS.gene56393.t1 MTR_1g035420 37.058 537 299 14 108 631 135 645 1.82e-106 337
MS.gene56393.t1 MTR_8g071030 40.179 448 247 9 194 631 300 736 6.15e-104 333
MS.gene56393.t1 MTR_4g010550 38.277 499 255 15 166 661 15 463 3.37e-98 309
MS.gene56393.t1 MTR_6g061270 36.523 512 285 15 171 658 195 690 4.94e-93 303
MS.gene56393.t1 MTR_7g084090 36.686 507 296 12 169 658 255 753 1.28e-91 300
MS.gene56393.t1 MTR_1g035400 34.766 512 300 14 139 631 68 564 6.44e-91 294
MS.gene56393.t1 MTR_6g044690 35.743 498 273 12 157 633 94 565 2.16e-89 290
MS.gene56393.t1 MTR_6g061200 35.458 502 275 14 171 658 195 661 4.67e-87 286
MS.gene56393.t1 MTR_0376s0030 35.098 510 291 14 135 633 83 563 3.22e-85 279
MS.gene56393.t1 MTR_6g043960 32.596 497 273 13 155 633 31 483 1.85e-71 239
MS.gene56393.t1 MTR_7g084090 38.547 358 206 7 169 515 255 609 1.55e-69 239
MS.gene56393.t1 MTR_1g048950 33.809 491 264 12 189 661 85 532 6.76e-67 229
MS.gene56393.t1 MTR_2g054460 31.250 512 280 12 139 633 9 465 3.02e-65 223
MS.gene56393.t1 MTR_7g445710 29.745 548 273 20 135 657 78 538 3.18e-58 206
MS.gene56393.t1 MTR_7g445530 29.750 521 255 19 135 630 78 512 2.06e-55 197
MS.gene56393.t1 MTR_7g450730 28.843 527 270 17 135 657 75 500 1.58e-54 194
MS.gene56393.t1 MTR_7g052480 31.319 364 213 11 302 658 219 552 3.14e-41 158
MS.gene56393.t1 MTR_1g080340 27.811 338 171 10 372 658 267 582 7.31e-32 131
MS.gene56393.t1 MTR_5g018850 31.889 323 166 10 370 661 1207 1506 1.74e-31 132
MS.gene56393.t1 MTR_8g078490 30.240 334 172 10 361 661 947 1252 1.49e-30 129
MS.gene56393.t1 MTR_1g069570 28.487 337 169 10 372 658 428 742 1.50e-28 122
MS.gene56393.t1 MTR_8g078505 28.923 325 177 9 359 657 237 533 2.21e-28 120
MS.gene56393.t1 MTR_4g132610 34.685 222 113 5 445 661 852 1046 5.50e-27 117
MS.gene56393.t1 MTR_7g098390 27.795 331 173 7 374 658 388 698 2.02e-25 112
MS.gene56393.t1 MTR_7g445600 35.065 154 59 2 477 630 243 355 1.23e-23 103
MS.gene56393.t1 MTR_7g445600 37.615 109 56 4 192 300 124 220 7.02e-11 64.7
MS.gene56393.t1 MTR_1g069570 26.966 267 128 8 372 589 428 676 1.52e-17 87.0
MS.gene56393.t1 MTR_1g098370 30.964 197 97 7 462 657 75 233 6.60e-16 81.3
MS.gene56393.t1 MTR_1g098000 30.964 197 97 7 462 657 72 230 1.21e-15 80.5
MS.gene56393.t1 MTR_6g059310 27.551 196 99 4 459 645 87 248 2.69e-15 78.2
MS.gene56393.t1 MTR_6g059310 27.551 196 99 4 459 645 87 248 2.71e-15 78.2
MS.gene56393.t1 MTR_0071s0100 30.457 197 96 5 463 659 191 346 1.39e-14 76.6
MS.gene56393.t1 MTR_1g012890 28.249 177 94 4 486 662 225 368 6.88e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56393.t1 AT5G04940 56.588 592 237 7 70 661 98 669 0.0 691
MS.gene56393.t1 AT5G04940 56.588 592 237 7 70 661 98 669 0.0 691
MS.gene56393.t1 AT1G73100 51.180 678 294 9 6 661 6 668 0.0 686
MS.gene56393.t1 AT1G17770 43.351 579 295 12 98 662 134 693 1.55e-154 462
MS.gene56393.t1 AT2G24740 45.102 541 251 14 129 661 252 754 9.25e-148 447
MS.gene56393.t1 AT2G35160 37.797 590 309 19 80 661 218 757 8.13e-111 351
MS.gene56393.t1 AT2G35160 37.797 590 309 19 80 661 254 793 3.01e-110 351
MS.gene56393.t1 AT2G35160 37.797 590 309 19 80 661 254 793 3.01e-110 351
MS.gene56393.t1 AT2G35160 37.797 590 309 19 80 661 254 793 3.01e-110 351
MS.gene56393.t1 AT2G35160 37.797 590 309 19 80 661 254 793 3.01e-110 351
MS.gene56393.t1 AT4G13460 39.010 505 284 11 139 631 145 637 3.55e-107 338
MS.gene56393.t1 AT4G13460 39.010 505 284 11 139 631 145 637 3.55e-107 338
MS.gene56393.t1 AT2G33290 38.583 508 279 8 139 631 149 638 1.91e-105 334
MS.gene56393.t1 AT2G33290 38.583 508 279 8 139 631 149 638 1.91e-105 334
MS.gene56393.t1 AT2G33290 38.583 508 279 8 139 631 149 638 1.91e-105 334
MS.gene56393.t1 AT2G33290 38.583 508 279 8 139 631 149 638 1.91e-105 334
MS.gene56393.t1 AT2G22740 37.523 533 304 13 139 658 270 786 3.36e-105 337
MS.gene56393.t1 AT2G22740 37.523 533 304 13 139 658 270 786 3.36e-105 337
MS.gene56393.t1 AT5G13960 36.140 487 279 14 192 658 12 486 1.75e-90 290
MS.gene56393.t1 AT5G13960 35.225 511 299 14 168 658 122 620 2.25e-89 291
MS.gene56393.t1 AT2G05900 41.176 221 121 4 212 428 1 216 4.88e-45 163
MS.gene56393.t1 AT2G05900 54.118 85 30 1 577 661 236 311 8.18e-23 100
MS.gene56393.t1 AT5G47150 41.589 214 113 5 139 347 118 324 2.51e-41 153
MS.gene56393.t1 AT3G04380 27.463 335 175 8 372 658 117 431 2.72e-35 139
MS.gene56393.t1 AT3G04380 27.463 335 175 8 372 658 128 442 3.05e-35 139
MS.gene56393.t1 AT3G04380 27.463 335 175 8 372 658 101 415 3.68e-35 139
MS.gene56393.t1 AT3G04380 27.463 335 175 8 372 658 117 431 3.70e-35 139
MS.gene56393.t1 AT3G04380 27.463 335 175 8 372 658 144 458 3.87e-35 139
MS.gene56393.t1 AT3G04380 27.463 335 175 8 372 658 144 458 3.94e-35 139
MS.gene56393.t1 AT5G47160 37.549 253 137 8 103 344 166 408 1.89e-34 136
MS.gene56393.t1 AT5G47160 37.549 253 137 8 103 344 166 408 1.89e-34 136
MS.gene56393.t1 AT5G47160 37.549 253 137 8 103 344 166 408 1.89e-34 136
MS.gene56393.t1 AT2G23740 31.988 322 166 15 368 662 1080 1375 8.43e-32 133
MS.gene56393.t1 AT2G23740 31.988 322 166 15 368 662 1087 1382 9.92e-32 132
MS.gene56393.t1 AT2G23740 31.988 322 166 15 368 662 1087 1382 9.92e-32 132
MS.gene56393.t1 AT2G23740 31.988 322 166 15 368 662 1087 1382 9.92e-32 132
MS.gene56393.t1 AT1G04050 29.674 337 163 13 372 658 303 615 5.20e-30 126
MS.gene56393.t1 AT1G04050 30.267 337 161 14 372 658 407 719 5.98e-30 126
MS.gene56393.t1 AT1G04050 30.267 337 161 14 372 658 407 719 5.98e-30 126
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 373 682 9.04e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 373 682 9.04e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 373 682 9.04e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 373 682 9.04e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 324 633 9.18e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 324 633 9.18e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 324 633 9.18e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 324 633 9.18e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 393 702 9.51e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 393 702 9.51e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 393 702 9.51e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 393 702 9.51e-29 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 396 705 1.02e-28 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 396 705 1.02e-28 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 304 613 1.09e-28 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 416 725 1.18e-28 122
MS.gene56393.t1 AT5G43990 28.190 337 165 12 372 658 416 725 1.18e-28 122
MS.gene56393.t1 AT3G03750 33.188 229 127 8 435 661 145 349 2.61e-23 102
MS.gene56393.t1 AT2G23740 32.530 249 120 14 368 589 1087 1314 1.70e-20 97.4
MS.gene56393.t1 AT2G23740 32.530 249 120 14 368 589 1087 1314 1.70e-20 97.4
MS.gene56393.t1 AT3G03750 29.956 227 121 8 435 661 145 333 7.03e-17 82.8
MS.gene56393.t1 AT1G77300 30.928 194 97 6 466 659 1008 1164 2.29e-15 80.9
MS.gene56393.t1 AT1G77300 30.928 194 97 6 466 659 1008 1164 3.56e-15 80.5
MS.gene56393.t1 AT4G30860 29.442 197 98 5 463 659 307 462 1.64e-13 73.9
MS.gene56393.t1 AT3G59960 27.869 183 75 6 485 658 112 246 9.40e-12 66.6
MS.gene56393.t1 AT3G59960 27.869 183 75 6 485 658 112 246 9.40e-12 66.6
MS.gene56393.t1 AT3G59960 27.869 183 75 6 485 658 112 246 9.40e-12 66.6
MS.gene56393.t1 AT3G59960 28.814 177 81 6 485 650 112 254 2.58e-11 65.9

Find 166 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAGGTCAGTATCCTTC+TGG 0.204050 3.1:-7616627 MS.gene56393:CDS
ACAGGTATCAAACTTCTTAT+AGG 0.235001 3.1:+7616675 None:intergenic
CGACTCCACTTCAAGCATTT+AGG 0.258428 3.1:-7616536 MS.gene56393:CDS
CAAGCATTTAGGAGCCCTTT+TGG 0.274971 3.1:-7616525 MS.gene56393:CDS
CATTGACAAGTATAAGATTC+TGG 0.293840 3.1:-7616706 MS.gene56393:CDS
AGAGTGGAAATATGTGAAAA+AGG 0.306165 3.1:+7615561 None:intergenic
TGCATTAAACTGAATGATTT+CGG 0.306178 3.1:+7615529 None:intergenic
CATGAGTTAACATATGATTA+TGG 0.312052 3.1:-7614881 MS.gene56393:CDS
TTATATTATCAATGGAGTTC+TGG 0.315928 3.1:-7615413 MS.gene56393:CDS
AGAACTCCATTGATAATATA+AGG 0.322628 3.1:+7615415 None:intergenic
TGTATAAAATTCAAGATTCA+TGG 0.343226 3.1:-7615795 MS.gene56393:CDS
TTCTTAGCATTTATAATAAG+AGG 0.346128 3.1:+7615037 None:intergenic
AGCATGTGTCCCTGGCGATT+TGG 0.346957 3.1:-7615473 MS.gene56393:CDS
CGAATGGAAATGTGTGTTAT+CGG 0.357207 3.1:-7616126 MS.gene56393:CDS
CTTCAGGTCAGTATCCTTCT+GGG 0.359790 3.1:-7616626 MS.gene56393:CDS
AACCTAGTGCCTTTGCCGTT+TGG 0.360454 3.1:-7615711 MS.gene56393:CDS
TTTGGTGCTTCAAACCGGTT+TGG 0.365259 3.1:+7615317 None:intergenic
TCATAAGGGTAATCTTGCTT+TGG 0.385063 3.1:-7615911 MS.gene56393:CDS
CAAAACAAAGGATAAAGGTT+GGG 0.388648 3.1:-7615284 MS.gene56393:CDS
TTGGTGCTTCAAACCGGTTT+GGG 0.391461 3.1:+7615318 None:intergenic
AATCCTCAAGGTCAATCTTC+AGG 0.392097 3.1:-7616642 MS.gene56393:CDS
TGTTATAATTTATACCGGTC+AGG 0.396575 3.1:-7615980 MS.gene56393:CDS
ACTTCATTGACAAGTGATAC+TGG 0.399879 3.1:+7615604 None:intergenic
TGTGTTTGTTCGAATTCCTT+TGG 0.402301 3.1:+7616203 None:intergenic
GATTGATGCCTTGCATATCC+AGG 0.403598 3.1:-7616079 MS.gene56393:CDS
ACTTGAAAGATTCATAAATA+CGG 0.407062 3.1:+7615131 None:intergenic
CGAACCTGTGTTCCATTCCT+TGG 0.409287 3.1:+7616266 None:intergenic
CAGTACCTGGAGTTGAGATT+GGG 0.418871 3.1:-7616164 MS.gene56393:CDS
ACAGGCTGCCAGAAAACATT+TGG 0.419329 3.1:+7614974 None:intergenic
ATTTGGACTGCTCATGCATT+CGG 0.422721 3.1:-7615456 MS.gene56393:CDS
TACCATTGTCTCTTTGACCT+GGG 0.423334 3.1:+7616361 None:intergenic
TCAGTACCTGGAGTTGAGAT+TGG 0.424381 3.1:-7616165 MS.gene56393:CDS
TTCCATTTGGTGCTTCAAAC+CGG 0.425045 3.1:+7615312 None:intergenic
ATTATAAATGCTAAGAATGT+TGG 0.437154 3.1:-7615031 MS.gene56393:CDS
CATCGCTCTACTTGGCTTTG+CGG 0.438113 3.1:+7616560 None:intergenic
GCTGTTAGCATTGTTTCGTC+AGG 0.439867 3.1:-7616033 MS.gene56393:CDS
AGAATAAGTCCAGTCCTTGC+AGG 0.449322 3.1:+7615658 None:intergenic
AAGGTTGGGGTCTTCGATCA+TGG 0.452431 3.1:-7615270 MS.gene56393:CDS
GCTGGTTTCCCTGCAAGGAC+TGG 0.456055 3.1:-7615667 MS.gene56393:CDS
ATAAAAGCACCAGCACGAAT+AGG 0.460396 3.1:+7615244 None:intergenic
TTACCATTGTCTCTTTGACC+TGG 0.461172 3.1:+7616360 None:intergenic
GTGTTCAAAACAAAGGATAA+AGG 0.462890 3.1:-7615289 MS.gene56393:CDS
GTGAATTGTATAATGGAAGA+AGG 0.464015 3.1:-7616762 None:intergenic
CGGTTTGCATGCTCAATCGA+TGG 0.470289 3.1:-7616106 MS.gene56393:CDS
CGATAACACACATTTCCATT+CGG 0.476797 3.1:+7616127 None:intergenic
TATTCTTGCTGACCTCTCCT+CGG 0.477270 3.1:-7615641 MS.gene56393:CDS
AGATCCTCATCCTCTCCAAA+AGG 0.481832 3.1:+7616510 None:intergenic
GTATCATGAGGTCCACCAAA+TGG 0.483316 3.1:+7616588 None:intergenic
ATCCTCACTAGACTCGTTTG+TGG 0.484407 3.1:+7615075 None:intergenic
CTTGAAAGATTCATAAATAC+GGG 0.486596 3.1:+7615132 None:intergenic
GTCAGATCAGAAGCTTCATA+AGG 0.487005 3.1:-7615926 MS.gene56393:CDS
CATGAGCAGTCCAAATCGCC+AGG 0.488074 3.1:+7615463 None:intergenic
GTTGATATGAGTGGTTTAGT+TGG 0.492160 3.1:-7616390 MS.gene56393:CDS
ACTGCTACCCTCGGTATGAT+TGG 0.492178 3.1:+7614847 None:intergenic
TGTATAATGGAAGAAGGGTT+AGG 0.492317 3.1:-7616756 None:intergenic
CAGAATCTTATACTTGTCAA+TGG 0.495015 3.1:+7616707 None:intergenic
GCACAATATTAACAACTTCA+CGG 0.500326 3.1:+7616337 None:intergenic
TGCATATCCAGGGTGACCGC+GGG 0.500357 3.1:-7616068 MS.gene56393:CDS
TCACAGCATCTTTGATGCCT+CGG 0.503981 3.1:+7615851 None:intergenic
GGTTTGCATGCTCAATCGAT+GGG 0.505325 3.1:-7616105 MS.gene56393:CDS
TATCATGAGGTCCACCAAAT+GGG 0.505449 3.1:+7616589 None:intergenic
TTGTTCTCTTCGTATAAGAC+AGG 0.505552 3.1:+7614956 None:intergenic
AACCGGTTTGAAGCACCAAA+TGG 0.508329 3.1:-7615314 MS.gene56393:CDS
TCTGTTCAGAAGTGGAAAGC+TGG 0.508734 3.1:-7615685 MS.gene56393:CDS
ATCAAAGATGCTGTGACTCC+AGG 0.511194 3.1:-7615844 MS.gene56393:CDS
GGTGATGTTATAATTTATAC+CGG 0.512209 3.1:-7615985 MS.gene56393:CDS
TATCTTCCCCGCGGTCACCC+TGG 0.516259 3.1:+7616061 None:intergenic
ATTCTTGCTGACCTCTCCTC+GGG 0.517115 3.1:-7615640 MS.gene56393:CDS
TCAATGGAGTTCTGGCGAAT+CGG 0.519477 3.1:-7615405 MS.gene56393:CDS
GTATAAAATTCAAGATTCAT+GGG 0.521482 3.1:-7615794 MS.gene56393:CDS
TATAAGTTGATAAGAGTGCC+TGG 0.523531 3.1:-7615736 MS.gene56393:CDS
TCAACACTCAGTTCCTCCCC+CGG 0.526455 3.1:-7616733 MS.gene56393:CDS
TGACCGCGGGGAAGATACTT+TGG 0.527412 3.1:-7616055 MS.gene56393:CDS
GGTTTAGTTGGTATAAGCCC+AGG 0.529198 3.1:-7616378 MS.gene56393:CDS
AAACGTACCGATTTAAAAGC+TGG 0.530169 3.1:-7616240 MS.gene56393:CDS
GTTGAAATTCCCACCCTGAC+CGG 0.530593 3.1:+7615966 None:intergenic
TCATATGTTAACTCATGCAT+TGG 0.532861 3.1:+7614887 None:intergenic
CGGCAGCATCACATTCAAGC+CGG 0.533696 3.1:-7616452 MS.gene56393:CDS
TCAAAACAAAGGATAAAGGT+TGG 0.534159 3.1:-7615285 MS.gene56393:CDS
GGTAGAAAGAAATGCTTATG+TGG 0.534383 3.1:-7614815 MS.gene56393:CDS
TCATGGGATCCTATTCGTGC+TGG 0.535655 3.1:-7615253 MS.gene56393:CDS
TCAGATCAGAAGCTTCATAA+GGG 0.535931 3.1:-7615925 MS.gene56393:CDS
TGCATGCTCAATCGATGGGG+GGG 0.538668 3.1:-7616101 MS.gene56393:CDS
TGAATTGTATAATGGAAGAA+GGG 0.540125 3.1:-7616761 None:intergenic
GGAGTCGGCATCGCTCTACT+TGG 0.540336 3.1:+7616552 None:intergenic
AGGTTGGGGTCTTCGATCAT+GGG 0.540693 3.1:-7615269 MS.gene56393:CDS
AAAACAAAGGATAAAGGTTG+GGG 0.541211 3.1:-7615283 MS.gene56393:CDS
GGCAATATTTGTATGACCAA+AGG 0.542268 3.1:-7616219 MS.gene56393:CDS
GGAAAGCTGGTTTCCCTGCA+AGG 0.545796 3.1:-7615672 MS.gene56393:CDS
GACTCTCGGCTCCCGAGGAG+AGG 0.546001 3.1:+7615629 None:intergenic
ATCTCAACTTGTAGATGCCA+AGG 0.547043 3.1:-7616283 MS.gene56393:CDS
ATGCAACATGGAGAAAGGAT+TGG 0.548940 3.1:+7614933 None:intergenic
TTCCAAACGGCAAAGGCACT+AGG 0.550397 3.1:+7615709 None:intergenic
GATCCTCATCCTCTCCAAAA+GGG 0.552939 3.1:+7616511 None:intergenic
AACTTGTAGATGCCAAGGAA+TGG 0.553451 3.1:-7616278 MS.gene56393:CDS
TTTGGAAATCTGTTCAGAAG+TGG 0.553589 3.1:-7615693 MS.gene56393:CDS
ATGTCCCCAATCTCAACTCC+AGG 0.554821 3.1:+7616159 None:intergenic
TCTTAGCATTTATAATAAGA+GGG 0.554977 3.1:+7615038 None:intergenic
GGCAGCATCACATTCAAGCC+GGG 0.555680 3.1:-7616451 MS.gene56393:CDS
GTATTTATGAATCTTTCAAG+TGG 0.556979 3.1:-7615129 MS.gene56393:CDS
GCAAAGGCACTAGGTTGTCC+AGG 0.558915 3.1:+7615718 None:intergenic
TTATACTTGTCAATGGAACC+CGG 0.562427 3.1:+7616714 None:intergenic
GGTCAGATTGAAGAAGCATA+AGG 0.562915 3.1:-7616430 MS.gene56393:CDS
TCACATAGTTGCAGCTGTAG+TGG 0.565201 3.1:-7615502 MS.gene56393:CDS
GCATTTATAATAAGAGGGTG+TGG 0.566087 3.1:+7615043 None:intergenic
CTAAATGCTTGAAGTGGAGT+CGG 0.566439 3.1:+7616537 None:intergenic
GAGAAGTTATCGATAAAGCT+AGG 0.566713 3.1:-7615207 MS.gene56393:CDS
GTTATAATTTATACCGGTCA+GGG 0.567735 3.1:-7615979 MS.gene56393:CDS
TTGCATGCTCAATCGATGGG+GGG 0.569075 3.1:-7616102 MS.gene56393:CDS
ATTTCGGATGTCTAAGAGAG+TGG 0.569188 3.1:+7615545 None:intergenic
AAGCCGTTGGTTCATGAATG+TGG 0.569854 3.1:-7615382 MS.gene56393:CDS
TTTGCATGCTCAATCGATGG+GGG 0.571740 3.1:-7616103 MS.gene56393:CDS
GAGGATCTCAATGACAATGA+TGG 0.572099 3.1:-7616495 MS.gene56393:CDS
TATGCTTCTTCAATCTGACC+CGG 0.573333 3.1:+7616433 None:intergenic
GTCGCTTCTTCTAGTAACTT+AGG 0.574919 3.1:+7615097 None:intergenic
TCGAACAAACACAGCGAAGA+GGG 0.575127 3.1:-7616193 MS.gene56393:CDS
TTGCATATCCAGGGTGACCG+CGG 0.575259 3.1:-7616069 MS.gene56393:CDS
TTTGCGTGCACTGCTACCCT+CGG 0.576882 3.1:+7614838 None:intergenic
TATGTTAACTCATGCATTGG+TGG 0.577942 3.1:+7614890 None:intergenic
GTTTGCATGCTCAATCGATG+GGG 0.580565 3.1:-7616104 MS.gene56393:CDS
AACAGATTTCCAAACGGCAA+AGG 0.589578 3.1:+7615702 None:intergenic
GGGCTCCTAAATGCTTGAAG+TGG 0.589829 3.1:+7616531 None:intergenic
TTAAGTCAGCTTGTACAAGA+AGG 0.590145 3.1:-7615184 MS.gene56393:CDS
AATGGAAGTGTTCAAAACAA+AGG 0.598701 3.1:-7615296 MS.gene56393:CDS
AAGTGATACTGGAAGACTCT+CGG 0.599204 3.1:+7615615 None:intergenic
CTTCTGAACAGATTTCCAAA+CGG 0.599772 3.1:+7615696 None:intergenic
TATACTTGTCAATGGAACCC+GGG 0.600215 3.1:+7616715 None:intergenic
TGACCTGAAGATTGACCTTG+AGG 0.600787 3.1:+7616639 None:intergenic
GAATAAGTCCAGTCCTTGCA+GGG 0.601962 3.1:+7615659 None:intergenic
CATTTGATGCGCTAAGACGA+AGG 0.602005 3.1:-7616308 MS.gene56393:CDS
AAGAGGGTAGGATCAGTACC+TGG 0.602661 3.1:-7616177 MS.gene56393:CDS
GGGCCACATTCATGAACCAA+CGG 0.610204 3.1:+7615379 None:intergenic
TCTGGCGAATCGGAAGCCGT+TGG 0.612003 3.1:-7615395 MS.gene56393:CDS
TGCTAAGAATGTTGGAAATG+TGG 0.613562 3.1:-7615023 MS.gene56393:CDS
GATGTTCATGTTGATATGAG+TGG 0.616806 3.1:-7616399 MS.gene56393:CDS
TGGAAGACTCTCGGCTCCCG+AGG 0.617476 3.1:+7615624 None:intergenic
AGCCCAGGTCAAAGAGACAA+TGG 0.619161 3.1:-7616363 MS.gene56393:CDS
TAATTTATACCGGTCAGGGT+GGG 0.620279 3.1:-7615975 MS.gene56393:CDS
TTAGGAAAACACTGACATGT+GGG 0.620821 3.1:+7615358 None:intergenic
GACCGTTCCAATCATACCGA+GGG 0.625961 3.1:-7614854 MS.gene56393:CDS
TACGACGATGAAGCTGAGGA+TGG 0.627250 3.1:-7616006 MS.gene56393:CDS
TACCCTCGGTATGATTGGAA+CGG 0.630497 3.1:+7614852 None:intergenic
GCGGTCACCCTGGATATGCA+AGG 0.632039 3.1:+7616071 None:intergenic
ACAAACACAGCGAAGAGGGT+AGG 0.634440 3.1:-7616189 MS.gene56393:CDS
CTACAGCTGCAACTATGTGA+AGG 0.634477 3.1:+7615505 None:intergenic
ATACTTGTCAATGGAACCCG+GGG 0.636158 3.1:+7616716 None:intergenic
ATTGATGCCTTGCATATCCA+GGG 0.637842 3.1:-7616078 MS.gene56393:CDS
GTTAGGAAAACACTGACATG+TGG 0.639912 3.1:+7615357 None:intergenic
GATGCCAAGGAATGGAACAC+AGG 0.640965 3.1:-7616270 MS.gene56393:CDS
AGAATACGACGATGAAGCTG+AGG 0.645222 3.1:-7616010 MS.gene56393:CDS
TTCGAACAAACACAGCGAAG+AGG 0.646517 3.1:-7616194 MS.gene56393:CDS
TTTGCGGTTGAAGTATCATG+AGG 0.649080 3.1:+7616576 None:intergenic
AGTACCTGGAGTTGAGATTG+GGG 0.657916 3.1:-7616163 MS.gene56393:CDS
TCATGCATTCGGAGAAACGA+AGG 0.659918 3.1:-7615445 MS.gene56393:CDS
ATAATTTATACCGGTCAGGG+TGG 0.675305 3.1:-7615976 MS.gene56393:CDS
GAGGGTAGCAGTGCACGCAA+AGG 0.681126 3.1:-7614836 MS.gene56393:CDS
TGTGGATCATCAAACTGCCG+CGG 0.682422 3.1:-7614797 MS.gene56393:CDS
GACCACAAACGAGTCTAGTG+AGG 0.682671 3.1:-7615077 MS.gene56393:CDS
ATGAGCAGTCCAAATCGCCA+GGG 0.685642 3.1:+7615464 None:intergenic
TAGGAAAACACTGACATGTG+GGG 0.688446 3.1:+7615359 None:intergenic
TGACCGTTCCAATCATACCG+AGG 0.697564 3.1:-7614855 MS.gene56393:CDS
GCATATCCAGGGTGACCGCG+GGG 0.702296 3.1:-7616067 MS.gene56393:CDS
AATGTCAAGTAAAAGAACCG+CGG 0.738828 3.1:+7614780 None:intergenic
AATGAAATAAGAGTCATCCG+AGG 0.740934 3.1:-7615868 MS.gene56393:CDS
CAGCCAAAGTATCTTCCCCG+CGG 0.752822 3.1:+7616052 None:intergenic
TACTTGTCAATGGAACCCGG+GGG 0.840303 3.1:+7616717 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGAAAGATTCATAAATA+CGG + chr3.1:7616406-7616425 None:intergenic 20.0%
!! ATTATAAATGCTAAGAATGT+TGG - chr3.1:7616503-7616522 MS.gene56393:CDS 20.0%
!! GTATAAAATTCAAGATTCAT+GGG - chr3.1:7615740-7615759 MS.gene56393:CDS 20.0%
!! TCTTAGCATTTATAATAAGA+GGG + chr3.1:7616499-7616518 None:intergenic 20.0%
!! TGTATAAAATTCAAGATTCA+TGG - chr3.1:7615739-7615758 MS.gene56393:CDS 20.0%
!! TTCTTAGCATTTATAATAAG+AGG + chr3.1:7616500-7616519 None:intergenic 20.0%
!!! GATTTTCCTTATATTATCAA+TGG - chr3.1:7616113-7616132 MS.gene56393:CDS 20.0%
! CATGAGTTAACATATGATTA+TGG - chr3.1:7616653-7616672 MS.gene56393:CDS 25.0%
! CTTGAAAGATTCATAAATAC+GGG + chr3.1:7616405-7616424 None:intergenic 25.0%
! GGTGATGTTATAATTTATAC+CGG - chr3.1:7615549-7615568 MS.gene56393:CDS 25.0%
! GTATTTATGAATCTTTCAAG+TGG - chr3.1:7616405-7616424 MS.gene56393:CDS 25.0%
! TGCATTAAACTGAATGATTT+CGG + chr3.1:7616008-7616027 None:intergenic 25.0%
! TTATATTATCAATGGAGTTC+TGG - chr3.1:7616121-7616140 MS.gene56393:CDS 25.0%
!! AATATTGCCAGCTTTTAAAT+CGG + chr3.1:7615304-7615323 None:intergenic 25.0%
!! AGAACTCCATTGATAATATA+AGG + chr3.1:7616122-7616141 None:intergenic 25.0%
AAAAAATGCAACATGGAGAA+AGG + chr3.1:7616609-7616628 None:intergenic 30.0%
AAAACAAAGGATAAAGGTTG+GGG - chr3.1:7616251-7616270 MS.gene56393:CDS 30.0%
ACAGGTATCAAACTTCTTAT+AGG + chr3.1:7614862-7614881 None:intergenic 30.0%
AGAGTGGAAATATGTGAAAA+AGG + chr3.1:7615976-7615995 None:intergenic 30.0%
CAAAACAAAGGATAAAGGTT+GGG - chr3.1:7616250-7616269 MS.gene56393:CDS 30.0%
CAGAATCTTATACTTGTCAA+TGG + chr3.1:7614830-7614849 None:intergenic 30.0%
CATTGACAAGTATAAGATTC+TGG - chr3.1:7614828-7614847 MS.gene56393:CDS 30.0%
GCAAAAATCTATGTCTATGA+TGG - chr3.1:7615714-7615733 MS.gene56393:CDS 30.0%
GCACAATATTAACAACTTCA+CGG + chr3.1:7615200-7615219 None:intergenic 30.0%
GTGTTCAAAACAAAGGATAA+AGG - chr3.1:7616245-7616264 MS.gene56393:CDS 30.0%
GTTATAATTTATACCGGTCA+GGG - chr3.1:7615555-7615574 MS.gene56393:CDS 30.0%
TCAAAACAAAGGATAAAGGT+TGG - chr3.1:7616249-7616268 MS.gene56393:CDS 30.0%
TCAATGCAAAAAATGCAACA+TGG + chr3.1:7616616-7616635 None:intergenic 30.0%
TCATATGTTAACTCATGCAT+TGG + chr3.1:7616650-7616669 None:intergenic 30.0%
TGTTATAATTTATACCGGTC+AGG - chr3.1:7615554-7615573 MS.gene56393:CDS 30.0%
! TTTTAGCAACAAAAGAAGTG+CGG - chr3.1:7615062-7615081 MS.gene56393:CDS 30.0%
!! AATGGAAGTGTTCAAAACAA+AGG - chr3.1:7616238-7616257 MS.gene56393:CDS 30.0%
!! TTTTCTCCATTTTTCCCATT+TGG - chr3.1:7614931-7614950 MS.gene56393:CDS 30.0%
!!! GTTTGATACCTGTTTTTTCA+AGG - chr3.1:7614869-7614888 MS.gene56393:CDS 30.0%
!!! TTGTTTTGAACACTTCCATT+TGG + chr3.1:7616238-7616257 None:intergenic 30.0%
AAAAATCGAGTATCCCAAAC+CGG - chr3.1:7616203-7616222 MS.gene56393:CDS 35.0%
AAAAATGGAGAAAACCCAGA+AGG + chr3.1:7614925-7614944 None:intergenic 35.0%
AATGAAATAAGAGTCATCCG+AGG - chr3.1:7615666-7615685 MS.gene56393:CDS 35.0%
ACTTCATTGACAAGTGATAC+TGG + chr3.1:7615933-7615952 None:intergenic 35.0%
CGAATGGAAATGTGTGTTAT+CGG - chr3.1:7615408-7615427 MS.gene56393:CDS 35.0%
CGATAACACACATTTCCATT+CGG + chr3.1:7615410-7615429 None:intergenic 35.0%
CTTCTGAACAGATTTCCAAA+CGG + chr3.1:7615841-7615860 None:intergenic 35.0%
GAGAAGTTATCGATAAAGCT+AGG - chr3.1:7616327-7616346 MS.gene56393:CDS 35.0%
GATGTTCATGTTGATATGAG+TGG - chr3.1:7615135-7615154 MS.gene56393:CDS 35.0%
GCATTTATAATAAGAGGGTG+TGG + chr3.1:7616494-7616513 None:intergenic 35.0%
GGCAATATTTGTATGACCAA+AGG - chr3.1:7615315-7615334 MS.gene56393:CDS 35.0%
GGTAGAAAGAAATGCTTATG+TGG - chr3.1:7616719-7616738 MS.gene56393:CDS 35.0%
GTTGATATGAGTGGTTTAGT+TGG - chr3.1:7615144-7615163 MS.gene56393:CDS 35.0%
TATGTTAACTCATGCATTGG+TGG + chr3.1:7616647-7616666 None:intergenic 35.0%
TCAGATCAGAAGCTTCATAA+GGG - chr3.1:7615609-7615628 MS.gene56393:CDS 35.0%
TCATAAGGGTAATCTTGCTT+TGG - chr3.1:7615623-7615642 MS.gene56393:CDS 35.0%
TGAGGATTCCTTGAAAAAAC+AGG + chr3.1:7614880-7614899 None:intergenic 35.0%
TGCTAAGAATGTTGGAAATG+TGG - chr3.1:7616511-7616530 MS.gene56393:CDS 35.0%
TGGAAATATGTGAAAAAGGC+AGG + chr3.1:7615972-7615991 None:intergenic 35.0%
TGTGTTTGTTCGAATTCCTT+TGG + chr3.1:7615334-7615353 None:intergenic 35.0%
TTAAGTCAGCTTGTACAAGA+AGG - chr3.1:7616350-7616369 MS.gene56393:CDS 35.0%
TTAGGAAAACACTGACATGT+GGG + chr3.1:7616179-7616198 None:intergenic 35.0%
TTATACTTGTCAATGGAACC+CGG + chr3.1:7614823-7614842 None:intergenic 35.0%
TTGTTCTCTTCGTATAAGAC+AGG + chr3.1:7616581-7616600 None:intergenic 35.0%
TTTGGAAATCTGTTCAGAAG+TGG - chr3.1:7615841-7615860 MS.gene56393:CDS 35.0%
! GATACTCGATTTTTGCAGTT+AGG + chr3.1:7616197-7616216 None:intergenic 35.0%
! GGACATTTTCTTTTTCCGAA+TGG - chr3.1:7615392-7615411 MS.gene56393:CDS 35.0%
! TAGACATAGATTTTTGCACC+TGG + chr3.1:7615711-7615730 None:intergenic 35.0%
! TCATGGGTTGAAAAAGCAAA+AGG - chr3.1:7615756-7615775 MS.gene56393:CDS 35.0%
!! AAACGTACCGATTTAAAAGC+TGG - chr3.1:7615294-7615313 MS.gene56393:CDS 35.0%
!! TATAAGTTGATAAGAGTGCC+TGG - chr3.1:7615798-7615817 MS.gene56393:CDS 35.0%
!!! GTTTTTTCAAGGAATCCTCA+AGG - chr3.1:7614880-7614899 MS.gene56393:CDS 35.0%
AACAGATTTCCAAACGGCAA+AGG + chr3.1:7615835-7615854 None:intergenic 40.0%
AACTTGTAGATGCCAAGGAA+TGG - chr3.1:7615256-7615275 MS.gene56393:CDS 40.0%
AAGTGATACTGGAAGACTCT+CGG + chr3.1:7615922-7615941 None:intergenic 40.0%
AATCCTCAAGGTCAATCTTC+AGG - chr3.1:7614892-7614911 MS.gene56393:CDS 40.0%
ATAATTTATACCGGTCAGGG+TGG - chr3.1:7615558-7615577 MS.gene56393:CDS 40.0%
ATCTCAACTTGTAGATGCCA+AGG - chr3.1:7615251-7615270 MS.gene56393:CDS 40.0%
ATGCAACATGGAGAAAGGAT+TGG + chr3.1:7616604-7616623 None:intergenic 40.0%
ATTGATGCCTTGCATATCCA+GGG - chr3.1:7615456-7615475 MS.gene56393:CDS 40.0%
ATTTCGGATGTCTAAGAGAG+TGG + chr3.1:7615992-7616011 None:intergenic 40.0%
ATTTGGACTGCTCATGCATT+CGG - chr3.1:7616078-7616097 MS.gene56393:CDS 40.0%
CTAAATGCTTGAAGTGGAGT+CGG + chr3.1:7615000-7615019 None:intergenic 40.0%
GAGGATCTCAATGACAATGA+TGG - chr3.1:7615039-7615058 MS.gene56393:CDS 40.0%
GTCAGATCAGAAGCTTCATA+AGG - chr3.1:7615608-7615627 MS.gene56393:CDS 40.0%
GTCGCTTCTTCTAGTAACTT+AGG + chr3.1:7616440-7616459 None:intergenic 40.0%
GTTAGGAAAACACTGACATG+TGG + chr3.1:7616180-7616199 None:intergenic 40.0%
GTTGAAAAAGCAAAAGGAGG+CGG - chr3.1:7615762-7615781 MS.gene56393:CDS 40.0%
TAATTTATACCGGTCAGGGT+GGG - chr3.1:7615559-7615578 MS.gene56393:CDS 40.0%
TACCATTGTCTCTTTGACCT+GGG + chr3.1:7615176-7615195 None:intergenic 40.0%
TAGGAAAACACTGACATGTG+GGG + chr3.1:7616178-7616197 None:intergenic 40.0%
TATACTTGTCAATGGAACCC+GGG + chr3.1:7614822-7614841 None:intergenic 40.0%
TATCATGAGGTCCACCAAAT+GGG + chr3.1:7614948-7614967 None:intergenic 40.0%
TATGCTTCTTCAATCTGACC+CGG + chr3.1:7615104-7615123 None:intergenic 40.0%
TTACCATTGTCTCTTTGACC+TGG + chr3.1:7615177-7615196 None:intergenic 40.0%
! GGTCAGATTGAAGAAGCATA+AGG - chr3.1:7615104-7615123 MS.gene56393:CDS 40.0%
! GTTGCTCTCCAAATGTTTTC+TGG - chr3.1:7616552-7616571 MS.gene56393:CDS 40.0%
! TGGGTTGAAAAAGCAAAAGG+AGG - chr3.1:7615759-7615778 MS.gene56393:CDS 40.0%
! TTTGCGGTTGAAGTATCATG+AGG + chr3.1:7614961-7614980 None:intergenic 40.0%
!! ATAAAAGCACCAGCACGAAT+AGG + chr3.1:7616293-7616312 None:intergenic 40.0%
!! GCTTTTATTTGCGAGTATGC+AGG - chr3.1:7616305-7616324 MS.gene56393:CDS 40.0%
!! TCTCCATTTTTCCCATTTGG+TGG - chr3.1:7614934-7614953 MS.gene56393:CDS 40.0%
!! TTCCATTTGGTGCTTCAAAC+CGG + chr3.1:7616225-7616244 None:intergenic 40.0%
ACAGGCTGCCAGAAAACATT+TGG + chr3.1:7616563-7616582 None:intergenic 45.0%
AGAATAAGTCCAGTCCTTGC+AGG + chr3.1:7615879-7615898 None:intergenic 45.0%
AGAATACGACGATGAAGCTG+AGG - chr3.1:7615524-7615543 MS.gene56393:CDS 45.0%
AGATCCTCATCCTCTCCAAA+AGG + chr3.1:7615027-7615046 None:intergenic 45.0%
AGTACCTGGAGTTGAGATTG+GGG - chr3.1:7615371-7615390 MS.gene56393:CDS 45.0%
ATACTTGTCAATGGAACCCG+GGG + chr3.1:7614821-7614840 None:intergenic 45.0%
ATCAAAGATGCTGTGACTCC+AGG - chr3.1:7615690-7615709 MS.gene56393:CDS 45.0%
ATCCTCACTAGACTCGTTTG+TGG + chr3.1:7616462-7616481 None:intergenic 45.0%
CAGTACCTGGAGTTGAGATT+GGG - chr3.1:7615370-7615389 MS.gene56393:CDS 45.0%
CATTTGATGCGCTAAGACGA+AGG - chr3.1:7615226-7615245 MS.gene56393:CDS 45.0%
CGACTCCACTTCAAGCATTT+AGG - chr3.1:7614998-7615017 MS.gene56393:CDS 45.0%
CTACAGCTGCAACTATGTGA+AGG + chr3.1:7616032-7616051 None:intergenic 45.0%
CTTCAGGTCAGTATCCTTCT+GGG - chr3.1:7614908-7614927 MS.gene56393:CDS 45.0%
GAATAAGTCCAGTCCTTGCA+GGG + chr3.1:7615878-7615897 None:intergenic 45.0%
GATCCTCATCCTCTCCAAAA+GGG + chr3.1:7615026-7615045 None:intergenic 45.0%
GATTGATGCCTTGCATATCC+AGG - chr3.1:7615455-7615474 MS.gene56393:CDS 45.0%
GCTGTTAGCATTGTTTCGTC+AGG - chr3.1:7615501-7615520 MS.gene56393:CDS 45.0%
GGTCCACCAAATGGGAAAAA+TGG + chr3.1:7614940-7614959 None:intergenic 45.0%
GGTTTGCATGCTCAATCGAT+GGG - chr3.1:7615429-7615448 MS.gene56393:CDS 45.0%
GTATCATGAGGTCCACCAAA+TGG + chr3.1:7614949-7614968 None:intergenic 45.0%
GTTTGCATGCTCAATCGATG+GGG - chr3.1:7615430-7615449 MS.gene56393:CDS 45.0%
TACCCTCGGTATGATTGGAA+CGG + chr3.1:7616685-7616704 None:intergenic 45.0%
TATTCTTGCTGACCTCTCCT+CGG - chr3.1:7615893-7615912 MS.gene56393:CDS 45.0%
TCACAGCATCTTTGATGCCT+CGG + chr3.1:7615686-7615705 None:intergenic 45.0%
TCACATAGTTGCAGCTGTAG+TGG - chr3.1:7616032-7616051 MS.gene56393:CDS 45.0%
TCAGTACCTGGAGTTGAGAT+TGG - chr3.1:7615369-7615388 MS.gene56393:CDS 45.0%
TCATGCATTCGGAGAAACGA+AGG - chr3.1:7616089-7616108 MS.gene56393:CDS 45.0%
TCGAACAAACACAGCGAAGA+GGG - chr3.1:7615341-7615360 MS.gene56393:CDS 45.0%
TCTGTTCAGAAGTGGAAAGC+TGG - chr3.1:7615849-7615868 MS.gene56393:CDS 45.0%
TCTTCAGGTCAGTATCCTTC+TGG - chr3.1:7614907-7614926 MS.gene56393:CDS 45.0%
TGACCTGAAGATTGACCTTG+AGG + chr3.1:7614898-7614917 None:intergenic 45.0%
TTCGAACAAACACAGCGAAG+AGG - chr3.1:7615340-7615359 MS.gene56393:CDS 45.0%
TTTGCATGCTCAATCGATGG+GGG - chr3.1:7615431-7615450 MS.gene56393:CDS 45.0%
! CAAGCATTTAGGAGCCCTTT+TGG - chr3.1:7615009-7615028 MS.gene56393:CDS 45.0%
! GGTAAAAAAGCATGTGTCCC+TGG - chr3.1:7616053-7616072 MS.gene56393:CDS 45.0%
! GGTTTAGTTGGTATAAGCCC+AGG - chr3.1:7615156-7615175 MS.gene56393:CDS 45.0%
! TCAATGGAGTTCTGGCGAAT+CGG - chr3.1:7616129-7616148 MS.gene56393:CDS 45.0%
! TTGGTGCTTCAAACCGGTTT+GGG + chr3.1:7616219-7616238 None:intergenic 45.0%
!! AACCGGTTTGAAGCACCAAA+TGG - chr3.1:7616220-7616239 MS.gene56393:CDS 45.0%
!! AAGCCGTTGGTTCATGAATG+TGG - chr3.1:7616152-7616171 MS.gene56393:CDS 45.0%
!! ATTTAGGAGCCCTTTTGGAG+AGG - chr3.1:7615014-7615033 MS.gene56393:CDS 45.0%
!! TTTGGTGCTTCAAACCGGTT+TGG + chr3.1:7616220-7616239 None:intergenic 45.0%
AACCTAGTGCCTTTGCCGTT+TGG - chr3.1:7615823-7615842 MS.gene56393:CDS 50.0%
AAGAGGGTAGGATCAGTACC+TGG - chr3.1:7615357-7615376 MS.gene56393:CDS 50.0%
AAGGTTGGGGTCTTCGATCA+TGG - chr3.1:7616264-7616283 MS.gene56393:CDS 50.0%
ACAAACACAGCGAAGAGGGT+AGG - chr3.1:7615345-7615364 MS.gene56393:CDS 50.0%
ACTGCTACCCTCGGTATGAT+TGG + chr3.1:7616690-7616709 None:intergenic 50.0%
AGCCCAGGTCAAAGAGACAA+TGG - chr3.1:7615171-7615190 MS.gene56393:CDS 50.0%
AGGTTGGGGTCTTCGATCAT+GGG - chr3.1:7616265-7616284 MS.gene56393:CDS 50.0%
ATGAGCAGTCCAAATCGCCA+GGG + chr3.1:7616073-7616092 None:intergenic 50.0%
ATGTCCCCAATCTCAACTCC+AGG + chr3.1:7615378-7615397 None:intergenic 50.0%
ATTCTTGCTGACCTCTCCTC+GGG - chr3.1:7615894-7615913 MS.gene56393:CDS 50.0%
CGAACCTGTGTTCCATTCCT+TGG + chr3.1:7615271-7615290 None:intergenic 50.0%
CGGTTTGCATGCTCAATCGA+TGG - chr3.1:7615428-7615447 MS.gene56393:CDS 50.0%
GAAAAAGCAAAAGGAGGCGG+TGG - chr3.1:7615765-7615784 MS.gene56393:CDS 50.0%
GACCACAAACGAGTCTAGTG+AGG - chr3.1:7616457-7616476 MS.gene56393:CDS 50.0%
GACCGTTCCAATCATACCGA+GGG - chr3.1:7616680-7616699 MS.gene56393:CDS 50.0%
GATGCCAAGGAATGGAACAC+AGG - chr3.1:7615264-7615283 MS.gene56393:CDS 50.0%
GGGCCACATTCATGAACCAA+CGG + chr3.1:7616158-7616177 None:intergenic 50.0%
GGGCTCCTAAATGCTTGAAG+TGG + chr3.1:7615006-7615025 None:intergenic 50.0%
GTTGAAATTCCCACCCTGAC+CGG + chr3.1:7615571-7615590 None:intergenic 50.0%
TACGACGATGAAGCTGAGGA+TGG - chr3.1:7615528-7615547 MS.gene56393:CDS 50.0%
TACTTGTCAATGGAACCCGG+GGG + chr3.1:7614820-7614839 None:intergenic 50.0%
TCATGGGATCCTATTCGTGC+TGG - chr3.1:7616281-7616300 MS.gene56393:CDS 50.0%
TGACCGTTCCAATCATACCG+AGG - chr3.1:7616679-7616698 MS.gene56393:CDS 50.0%
TGTGGATCATCAAACTGCCG+CGG - chr3.1:7616737-7616756 MS.gene56393:CDS 50.0%
TTGCATGCTCAATCGATGGG+GGG - chr3.1:7615432-7615451 MS.gene56393:CDS 50.0%
!! CATCGCTCTACTTGGCTTTG+CGG + chr3.1:7614977-7614996 None:intergenic 50.0%
!! TTCCAAACGGCAAAGGCACT+AGG + chr3.1:7615828-7615847 None:intergenic 50.0%
AGCATGTGTCCCTGGCGATT+TGG - chr3.1:7616061-7616080 MS.gene56393:CDS 55.0%
CATGAGCAGTCCAAATCGCC+AGG + chr3.1:7616074-7616093 None:intergenic 55.0%
CGGCAGCATCACATTCAAGC+CGG - chr3.1:7615082-7615101 MS.gene56393:CDS 55.0%
GGCAGCATCACATTCAAGCC+GGG - chr3.1:7615083-7615102 MS.gene56393:CDS 55.0%
TCAACACTCAGTTCCTCCCC+CGG - chr3.1:7614801-7614820 MS.gene56393:CDS 55.0%
TGACCGCGGGGAAGATACTT+TGG - chr3.1:7615479-7615498 MS.gene56393:CDS 55.0%
TGCATGCTCAATCGATGGGG+GGG - chr3.1:7615433-7615452 MS.gene56393:CDS 55.0%
TTGCATATCCAGGGTGACCG+CGG - chr3.1:7615465-7615484 MS.gene56393:CDS 55.0%
TTTGCGTGCACTGCTACCCT+CGG + chr3.1:7616699-7616718 None:intergenic 55.0%
! CAGCCAAAGTATCTTCCCCG+CGG + chr3.1:7615485-7615504 None:intergenic 55.0%
! GGAAAGCTGGTTTCCCTGCA+AGG - chr3.1:7615862-7615881 MS.gene56393:CDS 55.0%
!! GAGCCCTTTTGGAGAGGATG+AGG - chr3.1:7615020-7615039 MS.gene56393:CDS 55.0%
!! GCAAAGGCACTAGGTTGTCC+AGG + chr3.1:7615819-7615838 None:intergenic 55.0%
CAACACTCAGTTCCTCCCCC+GGG - chr3.1:7614802-7614821 MS.gene56393:CDS 60.0%
GAGGGTAGCAGTGCACGCAA+AGG - chr3.1:7616698-7616717 MS.gene56393:CDS 60.0%
GCGGTCACCCTGGATATGCA+AGG + chr3.1:7615466-7615485 None:intergenic 60.0%
GGAGTCGGCATCGCTCTACT+TGG + chr3.1:7614985-7615004 None:intergenic 60.0%
TCTGGCGAATCGGAAGCCGT+TGG - chr3.1:7616139-7616158 MS.gene56393:CDS 60.0%
TGCATATCCAGGGTGACCGC+GGG - chr3.1:7615466-7615485 MS.gene56393:CDS 60.0%
TTGTCAATGGAACCCGGGGG+AGG + chr3.1:7614817-7614836 None:intergenic 60.0%
! GCTGGTTTCCCTGCAAGGAC+TGG - chr3.1:7615867-7615886 MS.gene56393:CDS 60.0%
GCATATCCAGGGTGACCGCG+GGG - chr3.1:7615467-7615486 MS.gene56393:CDS 65.0%
TATCTTCCCCGCGGTCACCC+TGG + chr3.1:7615476-7615495 None:intergenic 65.0%
TGGAAGACTCTCGGCTCCCG+AGG + chr3.1:7615913-7615932 None:intergenic 65.0%
GACTCTCGGCTCCCGAGGAG+AGG + chr3.1:7615908-7615927 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 7614784 7616772 7614784 ID=MS.gene56393
chr3.1 mRNA 7614784 7616772 7614784 ID=MS.gene56393.t1;Parent=MS.gene56393
chr3.1 exon 7614784 7616772 7614784 ID=MS.gene56393.t1.exon1;Parent=MS.gene56393.t1
chr3.1 CDS 7614784 7616772 7614784 ID=cds.MS.gene56393.t1;Parent=MS.gene56393.t1
Gene Sequence

>MS.gene56393

ATGGAAGAAGGGTTAGGTCAACACTCAGTTCCTCCCCCGGGTTCCATTGACAAGTATAAGATTCTGGATATTAAGCCTATAAGAAGTTTGATACCTGTTTTTTCAAGGAATCCTCAAGGTCAATCTTCAGGTCAGTATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGGACCTCATGATACTTCAACCGCAAAGCCAAGTAGAGCGATGCCGACTCCACTTCAAGCATTTAGGAGCCCTTTTGGAGAGGATGAGGATCTCAATGACAATGATGGTTTTAGCAACAAAAGAAGTGCGGCAGCATCACATTCAAGCCGGGTCAGATTGAAGAAGCATAAGGTATATAATGATGTTCATGTTGATATGAGTGGTTTAGTTGGTATAAGCCCAGGTCAAAGAGACAATGGTAACCGTGAAGTTGTTAATATTGTGCTCATGACATTTGATGCGCTAAGACGAAGGCTATCTCAACTTGTAGATGCCAAGGAATGGAACACAGGTTCGATCAAACGTACCGATTTAAAAGCTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACACAGCGAAGAGGGTAGGATCAGTACCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTATCGGTTTGCATGCTCAATCGATGGGGGGGATTGATGCCTTGCATATCCAGGGTGACCGCGGGGAAGATACTTTGGCTGTTAGCATTGTTTCGTCAGGAGAATACGACGATGAAGCTGAGGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGATAAGCATGTGTCAGATCAGAAGCTTCATAAGGGTAATCTTGCTTTGGATAGAAGTTCACGAACACACAATGAAATAAGAGTCATCCGAGGCATCAAAGATGCTGTGACTCCAGGTGCAAAAATCTATGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGGTTGAAAAAGCAAAAGGAGGCGGTGGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAACCTAGTGCCTTTGCCGTTTGGAAATCTGTTCAGAAGTGGAAAGCTGGTTTCCCTGCAAGGACTGGACTTATTCTTGCTGACCTCTCCTCGGGAGCCGAGAGTCTTCCAGTATCACTTGTCAATGAAGTCGATAACGTTAAGTCACCTGCCTTTTTCACATATTTCCACTCTCTTAGACATCCGAAATCATTCAGTTTAATGCAGCCTTCACATAGTTGCAGCTGTAGTGGTAAAAAAGCATGTGTCCCTGGCGATTTGGACTGCTCATGCATTCGGAGAAACGAAGGTGATTTTCCTTATATTATCAATGGAGTTCTGGCGAATCGGAAGCCGTTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAGGATAAAGGTTGGGGTCTTCGATCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATCGATAAAGCTAGGTTAAGTCAGCTTGTACAAGAAGGAGATACTGATGAGTATGTTTTCGATACAACCCGTATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGTTACTAGAAGAAGCGACCACAAACGAGTCTAGTGAGGATTATGCTTTGCCACACCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCTCCAAATGTTTTCTGGCAGCCTGTCTTATACGAAGAGAACAACCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATTCCACCAATGCATGAGTTAACATATGATTATGGTTCTGACCGTTCCAATCATACCGAGGGTAGCAGTGCACGCAAAGGTAGAAAGAAATGCTTATGTGGATCATCAAACTGCCGCGGTTCTTTTACTTGA
Protein sequence

>MS.gene56393.t1

MEEGLGQHSVPPPGSIDKYKILDIKPIRSLIPVFSRNPQGQSSGQYPSGFSPFFPFGGPHDTSTAKPSRAMPTPLQAFRSPFGEDEDLNDNDGFSNKRSAAASHSSRVRLKKHKVYNDVHVDMSGLVGISPGQRDNGNREVVNIVLMTFDALRRRLSQLVDAKEWNTGSIKRTDLKAGNICMTKGIRTNTAKRVGSVPGVEIGDIFFFRMEMCVIGLHAQSMGGIDALHIQGDRGEDTLAVSIVSSGEYDDEAEDGDVIIYTGQGGNFNKKDKHVSDQKLHKGNLALDRSSRTHNEIRVIRGIKDAVTPGAKIYVYDGLYKIQDSWVEKAKGGGGLFKYKLIRVPGQPSAFAVWKSVQKWKAGFPARTGLILADLSSGAESLPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHSCSCSGKKACVPGDLDCSCIRRNEGDFPYIINGVLANRKPLVHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVQEGDTDEYVFDTTRIYESFKWNYEPKLLEEATTNESSEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMHELTYDYGSDRSNHTEGSSARKGRKKCLCGSSNCRGSFT