Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52041.t1 | XP_024635151.1 | 79.5 | 215 | 42 | 1 | 62 | 276 | 58 | 270 | 2.10E-84 | 322.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52041.t1 | Q9CAE4 | 75.6 | 127 | 30 | 1 | 67 | 193 | 52 | 177 | 2.4e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52041.t1 | A0A396IIV3 | 79.5 | 215 | 42 | 1 | 62 | 276 | 58 | 270 | 1.5e-84 | 322.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049343 | MS.gene52041 | 0.801072 | 1.07E-48 | -1.69E-46 |
| MS.gene049499 | MS.gene52041 | 0.800543 | 1.37E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene52041 | 0.833596 | 4.87E-56 | -1.69E-46 |
| MS.gene052685 | MS.gene52041 | 0.810815 | 9.55E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene52041 | 0.830163 | 3.43E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene52041 | 0.809877 | 1.52E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene52041 | 0.803085 | 4.12E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene52041 | 0.804412 | 2.19E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene52041 | 0.831058 | 2.07E-55 | -1.69E-46 |
| MS.gene058008 | MS.gene52041 | 0.81375 | 2.19E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene52041 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene52041 | 0.839401 | 1.62E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52041.t1 | MTR_5g071540 | 40.506 | 79 | 47 | 0 | 69 | 147 | 36 | 114 | 9.07e-12 | 62.0 |
| MS.gene52041.t1 | MTR_8g031560 | 46.774 | 62 | 33 | 0 | 73 | 134 | 200 | 261 | 1.42e-11 | 63.9 |
| MS.gene52041.t1 | MTR_4g117350 | 40.000 | 80 | 48 | 0 | 69 | 148 | 68 | 147 | 1.69e-11 | 61.6 |
| MS.gene52041.t1 | MTR_6g084140 | 24.576 | 118 | 85 | 2 | 67 | 183 | 255 | 369 | 1.90e-11 | 64.3 |
| MS.gene52041.t1 | MTR_6g084140 | 24.576 | 118 | 85 | 2 | 67 | 183 | 238 | 352 | 2.12e-11 | 64.3 |
| MS.gene52041.t1 | MTR_8g442420 | 24.576 | 118 | 85 | 2 | 67 | 183 | 238 | 352 | 2.67e-11 | 63.9 |
| MS.gene52041.t1 | MTR_7g105260 | 36.000 | 75 | 48 | 0 | 74 | 148 | 34 | 108 | 8.10e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52041.t1 | AT3G10400 | 54.043 | 235 | 97 | 3 | 8 | 242 | 3 | 226 | 7.64e-66 | 206 |
| MS.gene52041.t1 | AT4G20030 | 38.182 | 110 | 66 | 1 | 46 | 153 | 12 | 121 | 2.52e-15 | 72.0 |
| MS.gene52041.t1 | AT3G23830 | 32.039 | 103 | 70 | 0 | 53 | 155 | 16 | 118 | 9.76e-12 | 61.6 |
| MS.gene52041.t1 | AT3G23830 | 32.039 | 103 | 70 | 0 | 53 | 155 | 16 | 118 | 9.76e-12 | 61.6 |
| MS.gene52041.t1 | AT1G53720 | 25.974 | 154 | 110 | 2 | 67 | 219 | 238 | 388 | 5.74e-11 | 63.2 |
Find 79 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGAGATCGGAGTTAGTT+AGG | 0.267856 | 3.3:+7127733 | None:intergenic |
| ATCTAGATTTGAAACGTATA+TGG | 0.283307 | 3.3:+7127761 | None:intergenic |
| CCGAAGAAGCGGAGGGGATT+TGG | 0.283372 | 3.3:-7127393 | MS.gene52041:CDS |
| AGCGGTTTGAGGAAGATAAT+TGG | 0.283585 | 3.3:-7127299 | MS.gene52041:CDS |
| GTCGTCTTCTTCGTCGCTAT+TGG | 0.300293 | 3.3:+7127944 | None:intergenic |
| GCTTCTATTGCTGCTGATAA+TGG | 0.315635 | 3.3:-7127546 | MS.gene52041:CDS |
| GTTGTTGTTGTTGGTGGTGG+TGG | 0.330897 | 3.3:+7127872 | None:intergenic |
| CTCGGCCCCAACTGATTCTT+AGG | 0.340061 | 3.3:+7127429 | None:intergenic |
| TGGGAATGAGGATGAGGGTT+TGG | 0.340368 | 3.3:-7127229 | MS.gene52041:CDS |
| GCTAAGGTTTCTCCTGTTGA+TGG | 0.352088 | 3.3:+7127798 | None:intergenic |
| CGGAGGGGATTTGGTGGGTC+TGG | 0.354612 | 3.3:-7127384 | MS.gene52041:CDS |
| AAGAAGAAAGGGAAGAGAAC+TGG | 0.357563 | 3.3:-7127189 | MS.gene52041:CDS |
| AAACAGTCACACGCGCTATA+CGG | 0.360032 | 3.3:+7127691 | None:intergenic |
| AACAACAAAGCACCATCAAC+AGG | 0.364820 | 3.3:-7127810 | MS.gene52041:CDS |
| ATGAGGAGGAAGAGAATGAT+AGG | 0.378643 | 3.3:-7127332 | MS.gene52041:CDS |
| CCAAATCCCCTCCGCTTCTT+CGG | 0.380947 | 3.3:+7127393 | None:intergenic |
| GAGGAATGGGAATGAGGATG+AGG | 0.389262 | 3.3:-7127235 | MS.gene52041:CDS |
| GATTTGGTTGTTGTTGTTGT+TGG | 0.390124 | 3.3:+7127863 | None:intergenic |
| CGGCGCGTTGCGCGTCGTGA+CGG | 0.410883 | 3.3:+7127613 | None:intergenic |
| AGAGATTGTTGGGGAGGAAT+GGG | 0.413656 | 3.3:-7127248 | MS.gene52041:CDS |
| GCGGTTTGAGGAAGATAATT+GGG | 0.423053 | 3.3:-7127298 | MS.gene52041:CDS |
| GGAGAAGAGAGTGTGGAGAT+CGG | 0.426897 | 3.3:+7127722 | None:intergenic |
| GGAGCTGATGAGAGATTGTT+GGG | 0.428858 | 3.3:-7127258 | MS.gene52041:CDS |
| GTTGTTGTTGGTGGTGGTGG+TGG | 0.432119 | 3.3:+7127875 | None:intergenic |
| GAGAGATTGTTGGGGAGGAA+TGG | 0.433014 | 3.3:-7127249 | MS.gene52041:CDS |
| AGAAGAGGAGGAAGAAGAAA+GGG | 0.435798 | 3.3:-7127200 | MS.gene52041:CDS |
| TTCGGCTGCGGCCTCGCCCT+CGG | 0.435938 | 3.3:+7127411 | None:intergenic |
| ATCAGTTGGGGCCGAGGGCG+AGG | 0.439183 | 3.3:-7127422 | MS.gene52041:CDS |
| AGAAGAAAGGGAAGAGAACT+GGG | 0.445138 | 3.3:-7127188 | MS.gene52041:intron |
| GTGGAGATCGGAGTTAGTTA+GGG | 0.445278 | 3.3:+7127734 | None:intergenic |
| GGCGCGTTGCGCGTCGTGAC+GGG | 0.452642 | 3.3:+7127614 | None:intergenic |
| CACACTCTCTTCTCCACCTT+CGG | 0.461917 | 3.3:-7127714 | MS.gene52041:CDS |
| AAGAAGAGGAGGAAGAAGAA+AGG | 0.467945 | 3.3:-7127201 | MS.gene52041:CDS |
| GAGTGTCCTAAGAATCAGTT+GGG | 0.469055 | 3.3:-7127435 | MS.gene52041:CDS |
| CGAGGCCGCAGCCGAAGAAG+CGG | 0.473554 | 3.3:-7127404 | MS.gene52041:CDS |
| GACCCGCTTCTTTATAAACT+CGG | 0.477110 | 3.3:+7127515 | None:intergenic |
| GGGGATTTGGTGGGTCTGGA+TGG | 0.477888 | 3.3:-7127380 | MS.gene52041:CDS |
| GATTGGTGCGGAGCGGTTTG+AGG | 0.481268 | 3.3:-7127310 | MS.gene52041:CDS |
| AAGAGAAGAGGAGGGTGATG+AGG | 0.487030 | 3.3:-7127349 | MS.gene52041:CDS |
| AAAGAAGCGGGTCTATAATA+CGG | 0.502016 | 3.3:-7127505 | MS.gene52041:CDS |
| GGCCGCAGCCGAAGAAGCGG+AGG | 0.505309 | 3.3:-7127401 | MS.gene52041:CDS |
| TGGAGCTGATGAGAGATTGT+TGG | 0.506357 | 3.3:-7127259 | MS.gene52041:CDS |
| TGGGCTTCTGTGGTGGATGA+TGG | 0.506642 | 3.3:-7127279 | MS.gene52041:CDS |
| CCCCTCCGCTTCTTCGGCTG+CGG | 0.507896 | 3.3:+7127399 | None:intergenic |
| GAGTAAAGAAAGAGAAGAGG+AGG | 0.509297 | 3.3:-7127358 | MS.gene52041:CDS |
| AGAAGAGGAGGGTGATGAGG+AGG | 0.511201 | 3.3:-7127346 | MS.gene52041:CDS |
| CTAAGAATCAGTTGGGGCCG+AGG | 0.513367 | 3.3:-7127428 | MS.gene52041:CDS |
| CGGGTCTATAATACGGAGAC+TGG | 0.513875 | 3.3:-7127498 | MS.gene52041:CDS |
| GTTGGGGAGGAATGGGAATG+AGG | 0.515444 | 3.3:-7127241 | MS.gene52041:CDS |
| AAGAAGCGGAGGGGATTTGG+TGG | 0.519949 | 3.3:-7127390 | MS.gene52041:CDS |
| GAGGAAGAGAATGATAGGAT+TGG | 0.536314 | 3.3:-7127327 | MS.gene52041:CDS |
| AGGAATGGGAATGAGGATGA+GGG | 0.539128 | 3.3:-7127234 | MS.gene52041:CDS |
| GTTTGGATGATAAGAAGAGG+AGG | 0.540664 | 3.3:-7127212 | MS.gene52041:CDS |
| TTGAGGATGAAGCGCAGAAA+CGG | 0.549990 | 3.3:+7127907 | None:intergenic |
| AGGGTTTGGATGATAAGAAG+AGG | 0.553135 | 3.3:-7127215 | MS.gene52041:CDS |
| CTGATGAGAGATTGTTGGGG+AGG | 0.555442 | 3.3:-7127254 | MS.gene52041:CDS |
| TCCCGAGTTTATAAAGAAGC+GGG | 0.556257 | 3.3:-7127517 | MS.gene52041:CDS |
| ACCCGCTTCTTTATAAACTC+GGG | 0.558099 | 3.3:+7127516 | None:intergenic |
| ACGCGCTATACGGCCGAAGG+TGG | 0.566676 | 3.3:+7127701 | None:intergenic |
| GCCGCAGCCGAAGAAGCGGA+GGG | 0.570976 | 3.3:-7127400 | MS.gene52041:CDS |
| CTCCCGAGTTTATAAAGAAG+CGG | 0.578728 | 3.3:-7127518 | MS.gene52041:CDS |
| TAAGAATCAGTTGGGGCCGA+GGG | 0.580052 | 3.3:-7127427 | MS.gene52041:CDS |
| ATGGAGTAAAGAAAGAGAAG+AGG | 0.580144 | 3.3:-7127361 | MS.gene52041:CDS |
| CTTCTTATTCATCTCAGTCA+CGG | 0.582423 | 3.3:+7127593 | None:intergenic |
| AGTAAAGAAAGAGAAGAGGA+GGG | 0.582542 | 3.3:-7127357 | MS.gene52041:CDS |
| TGAGTGTCCTAAGAATCAGT+TGG | 0.584639 | 3.3:-7127436 | MS.gene52041:CDS |
| GGAAGATAATTGGGCTTCTG+TGG | 0.587135 | 3.3:-7127289 | MS.gene52041:CDS |
| CGAAGGTGGAGAAGAGAGTG+TGG | 0.605302 | 3.3:+7127715 | None:intergenic |
| CTCGGCTTAAGCGCGTGTGA+CGG | 0.614525 | 3.3:+7127661 | None:intergenic |
| AGATAATTGGGCTTCTGTGG+TGG | 0.619293 | 3.3:-7127286 | MS.gene52041:CDS |
| AGAAGCGGAGGGGATTTGGT+GGG | 0.621026 | 3.3:-7127389 | MS.gene52041:CDS |
| CGTCACACGCGCTTAAGCCG+AGG | 0.628978 | 3.3:-7127660 | MS.gene52041:CDS |
| CACACGCGCTATACGGCCGA+AGG | 0.652439 | 3.3:+7127698 | None:intergenic |
| ATGATAGGATTGGTGCGGAG+CGG | 0.655795 | 3.3:-7127317 | MS.gene52041:CDS |
| AGAGAATGATAGGATTGGTG+CGG | 0.662791 | 3.3:-7127322 | MS.gene52041:CDS |
| ATTGAATAAAAGCTACACCT+CGG | 0.669611 | 3.3:+7127643 | None:intergenic |
| CCGCAGCCGAAGAAGCGGAG+GGG | 0.678407 | 3.3:-7127399 | MS.gene52041:CDS |
| GAGCTGATGAGAGATTGTTG+GGG | 0.710970 | 3.3:-7127257 | MS.gene52041:CDS |
| AGTGTCCTAAGAATCAGTTG+GGG | 0.789780 | 3.3:-7127434 | MS.gene52041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATGAAATTATATATA+TGG | - | chr3.3:7127810-7127829 | MS.gene52041:CDS | 10.0% |
| !! | ATGAAATTATATATATGGTT+TGG | - | chr3.3:7127815-7127834 | MS.gene52041:CDS | 15.0% |
| !! | TATGTGTAATTTATTAGTAA+CGG | - | chr3.3:7127660-7127679 | MS.gene52041:CDS | 15.0% |
| !! | AAAGTGATAATTAGTGATAA+TGG | - | chr3.3:7127921-7127940 | MS.gene52041:CDS | 20.0% |
| !! | TCATGTATTAAGATTAATGT+CGG | - | chr3.3:7127755-7127774 | MS.gene52041:CDS | 20.0% |
| !!! | ATGAATAAGAAGATTTTGAA+TGG | - | chr3.3:7127174-7127193 | MS.gene52041:intron | 20.0% |
| !! | ATAAGAAGATTTTGAATGGT+AGG | - | chr3.3:7127178-7127197 | MS.gene52041:intron | 25.0% |
| !! | ATCTAGATTTGAAACGTATA+TGG | + | chr3.3:7126998-7127017 | None:intergenic | 25.0% |
| !! | GGTTTCATAGGAAAATTTTA+TGG | - | chr3.3:7127836-7127855 | MS.gene52041:CDS | 25.0% |
| !!! | TATATATGGTTTGGTTTCAT+AGG | - | chr3.3:7127824-7127843 | MS.gene52041:CDS | 25.0% |
| ATTGAATAAAAGCTACACCT+CGG | + | chr3.3:7127116-7127135 | None:intergenic | 30.0% | |
| !! | ACGTATATGGTTGATTTTGA+TGG | + | chr3.3:7126985-7127004 | None:intergenic | 30.0% |
| !! | TGTTGTTTGATTTTGAGGAT+TGG | + | chr3.3:7126918-7126937 | None:intergenic | 30.0% |
| !! | TTGATTTTGAGGATTGGATT+TGG | + | chr3.3:7126912-7126931 | None:intergenic | 30.0% |
| !!! | GTTGTTGTTGTTTGATTTTG+AGG | + | chr3.3:7126923-7126942 | None:intergenic | 30.0% |
| !!! | TGATGGTGTTTTTTATATCG+AGG | - | chr3.3:7127637-7127656 | MS.gene52041:CDS | 30.0% |
| AAAGAAGCGGGTCTATAATA+CGG | - | chr3.3:7127251-7127270 | MS.gene52041:CDS | 35.0% | |
| AGTAAAGAAAGAGAAGAGGA+GGG | - | chr3.3:7127399-7127418 | MS.gene52041:CDS | 35.0% | |
| ATGGAGTAAAGAAAGAGAAG+AGG | - | chr3.3:7127395-7127414 | MS.gene52041:CDS | 35.0% | |
| CTTCTTATTCATCTCAGTCA+CGG | + | chr3.3:7127166-7127185 | None:intergenic | 35.0% | |
| GCATATGGTCACATTAATGT+TGG | - | chr3.3:7127730-7127749 | MS.gene52041:CDS | 35.0% | |
| GTTCATGAGCTATCAAACTA+TGG | + | chr3.3:7127976-7127995 | None:intergenic | 35.0% | |
| TGTAACAATATCGACGCATA+TGG | - | chr3.3:7127715-7127734 | MS.gene52041:CDS | 35.0% | |
| ! | CTTCTGATTGAAAGTGTGTT+CGG | - | chr3.3:7127686-7127705 | MS.gene52041:CDS | 35.0% |
| ! | GATTTGGTTGTTGTTGTTGT+TGG | + | chr3.3:7126896-7126915 | None:intergenic | 35.0% |
| AAGAAGAAAGGGAAGAGAAC+TGG | - | chr3.3:7127567-7127586 | MS.gene52041:CDS | 40.0% | |
| AAGAAGAGGAGGAAGAAGAA+AGG | - | chr3.3:7127555-7127574 | MS.gene52041:CDS | 40.0% | |
| ACCCGCTTCTTTATAAACTC+GGG | + | chr3.3:7127243-7127262 | None:intergenic | 40.0% | |
| AGAAGAAAGGGAAGAGAACT+GGG | - | chr3.3:7127568-7127587 | MS.gene52041:CDS | 40.0% | |
| AGAAGAGGAGGAAGAAGAAA+GGG | - | chr3.3:7127556-7127575 | MS.gene52041:CDS | 40.0% | |
| AGCGGTTTGAGGAAGATAAT+TGG | - | chr3.3:7127457-7127476 | MS.gene52041:CDS | 40.0% | |
| AGGGTTTGGATGATAAGAAG+AGG | - | chr3.3:7127541-7127560 | MS.gene52041:CDS | 40.0% | |
| AGTGTCCTAAGAATCAGTTG+GGG | - | chr3.3:7127322-7127341 | MS.gene52041:CDS | 40.0% | |
| ATGAGGAGGAAGAGAATGAT+AGG | - | chr3.3:7127424-7127443 | MS.gene52041:CDS | 40.0% | |
| CGATGATTGATCGTGAATGA+TGG | - | chr3.3:7127620-7127639 | MS.gene52041:CDS | 40.0% | |
| CTCCCGAGTTTATAAAGAAG+CGG | - | chr3.3:7127238-7127257 | MS.gene52041:CDS | 40.0% | |
| GACCCGCTTCTTTATAAACT+CGG | + | chr3.3:7127244-7127263 | None:intergenic | 40.0% | |
| GAGGAAGAGAATGATAGGAT+TGG | - | chr3.3:7127429-7127448 | MS.gene52041:CDS | 40.0% | |
| GAGTAAAGAAAGAGAAGAGG+AGG | - | chr3.3:7127398-7127417 | MS.gene52041:CDS | 40.0% | |
| GAGTGTCCTAAGAATCAGTT+GGG | - | chr3.3:7127321-7127340 | MS.gene52041:CDS | 40.0% | |
| GCGGTTTGAGGAAGATAATT+GGG | - | chr3.3:7127458-7127477 | MS.gene52041:CDS | 40.0% | |
| GCTTCTATTGCTGCTGATAA+TGG | - | chr3.3:7127210-7127229 | MS.gene52041:CDS | 40.0% | |
| GTTTGGATGATAAGAAGAGG+AGG | - | chr3.3:7127544-7127563 | MS.gene52041:CDS | 40.0% | |
| TAGTGATGAGAGTGATCATG+AGG | - | chr3.3:7127596-7127615 | MS.gene52041:CDS | 40.0% | |
| TCCCGAGTTTATAAAGAAGC+GGG | - | chr3.3:7127239-7127258 | MS.gene52041:CDS | 40.0% | |
| TGAGTGTCCTAAGAATCAGT+TGG | - | chr3.3:7127320-7127339 | MS.gene52041:CDS | 40.0% | |
| ! | AACAACAAAGCACCATCAAC+AGG | - | chr3.3:7126946-7126965 | MS.gene52041:intron | 40.0% |
| ! | AGAGAATGATAGGATTGGTG+CGG | - | chr3.3:7127434-7127453 | MS.gene52041:CDS | 40.0% |
| ! | TTGGTTGTTGTTGTTGTTGG+TGG | + | chr3.3:7126893-7126912 | None:intergenic | 40.0% |
| !! | GTTTGTGTTTTGAGTGTGGT+GGG | - | chr3.3:7127280-7127299 | MS.gene52041:CDS | 40.0% |
| !!! | ACTGGTTTGTGTTTTGAGTG+TGG | - | chr3.3:7127276-7127295 | MS.gene52041:CDS | 40.0% |
| !!! | GGTTGATTTTGATGGTGCTA+AGG | + | chr3.3:7126977-7126996 | None:intergenic | 40.0% |
| AAACAGTCACACGCGCTATA+CGG | + | chr3.3:7127068-7127087 | None:intergenic | 45.0% | |
| AGAGATTGTTGGGGAGGAAT+GGG | - | chr3.3:7127508-7127527 | MS.gene52041:CDS | 45.0% | |
| AGATAATTGGGCTTCTGTGG+TGG | - | chr3.3:7127470-7127489 | MS.gene52041:CDS | 45.0% | |
| AGGAATGGGAATGAGGATGA+GGG | - | chr3.3:7127522-7127541 | MS.gene52041:CDS | 45.0% | |
| GAGCTGATGAGAGATTGTTG+GGG | - | chr3.3:7127499-7127518 | MS.gene52041:CDS | 45.0% | |
| GCTAAGGTTTCTCCTGTTGA+TGG | + | chr3.3:7126961-7126980 | None:intergenic | 45.0% | |
| GGAAGATAATTGGGCTTCTG+TGG | - | chr3.3:7127467-7127486 | MS.gene52041:CDS | 45.0% | |
| GGAGCTGATGAGAGATTGTT+GGG | - | chr3.3:7127498-7127517 | MS.gene52041:CDS | 45.0% | |
| GTGGAGATCGGAGTTAGTTA+GGG | + | chr3.3:7127025-7127044 | None:intergenic | 45.0% | |
| TGGAGCTGATGAGAGATTGT+TGG | - | chr3.3:7127497-7127516 | MS.gene52041:CDS | 45.0% | |
| TGTGGAGATCGGAGTTAGTT+AGG | + | chr3.3:7127026-7127045 | None:intergenic | 45.0% | |
| TTGAGGATGAAGCGCAGAAA+CGG | + | chr3.3:7126852-7126871 | None:intergenic | 45.0% | |
| ! | CTGATTGAAAGTGTGTTCGG+AGG | - | chr3.3:7127689-7127708 | MS.gene52041:CDS | 45.0% |
| ! | GCATGCGTCAGAGCTTTATA+GGG | - | chr3.3:7127784-7127803 | MS.gene52041:CDS | 45.0% |
| ! | GTTGTTGTTGTTGTTGGTGG+TGG | + | chr3.3:7126890-7126909 | None:intergenic | 45.0% |
| ! | TGCATGCGTCAGAGCTTTAT+AGG | - | chr3.3:7127783-7127802 | MS.gene52041:CDS | 45.0% |
| !! | GGTTTGTGTTTTGAGTGTGG+TGG | - | chr3.3:7127279-7127298 | MS.gene52041:CDS | 45.0% |
| AAGAGAAGAGGAGGGTGATG+AGG | - | chr3.3:7127407-7127426 | MS.gene52041:CDS | 50.0% | |
| CACACTCTCTTCTCCACCTT+CGG | - | chr3.3:7127042-7127061 | MS.gene52041:intron | 50.0% | |
| CGGGTCTATAATACGGAGAC+TGG | - | chr3.3:7127258-7127277 | MS.gene52041:CDS | 50.0% | |
| CTGATGAGAGATTGTTGGGG+AGG | - | chr3.3:7127502-7127521 | MS.gene52041:CDS | 50.0% | |
| GAGAGATTGTTGGGGAGGAA+TGG | - | chr3.3:7127507-7127526 | MS.gene52041:CDS | 50.0% | |
| GAGGAATGGGAATGAGGATG+AGG | - | chr3.3:7127521-7127540 | MS.gene52041:CDS | 50.0% | |
| GTCGTCTTCTTCGTCGCTAT+TGG | + | chr3.3:7126815-7126834 | None:intergenic | 50.0% | |
| TAAGAATCAGTTGGGGCCGA+GGG | - | chr3.3:7127329-7127348 | MS.gene52041:CDS | 50.0% | |
| TGGGAATGAGGATGAGGGTT+TGG | - | chr3.3:7127527-7127546 | MS.gene52041:CDS | 50.0% | |
| ! | ATGATAGGATTGGTGCGGAG+CGG | - | chr3.3:7127439-7127458 | MS.gene52041:CDS | 50.0% |
| ! | GGAGAAGAGAGTGTGGAGAT+CGG | + | chr3.3:7127037-7127056 | None:intergenic | 50.0% |
| !! | GTTGTTGTTGTTGGTGGTGG+TGG | + | chr3.3:7126887-7126906 | None:intergenic | 50.0% |
| !! | GTTTTGAGTGTGGTGGGAGT+GGG | - | chr3.3:7127286-7127305 | MS.gene52041:CDS | 50.0% |
| !! | TGTTTTGAGTGTGGTGGGAG+TGG | - | chr3.3:7127285-7127304 | MS.gene52041:CDS | 50.0% |
| AAGAAGCGGAGGGGATTTGG+TGG | - | chr3.3:7127366-7127385 | MS.gene52041:CDS | 55.0% | |
| AGAAGAGGAGGGTGATGAGG+AGG | - | chr3.3:7127410-7127429 | MS.gene52041:CDS | 55.0% | |
| CCAAATCCCCTCCGCTTCTT+CGG | + | chr3.3:7127366-7127385 | None:intergenic | 55.0% | |
| CGAAGGTGGAGAAGAGAGTG+TGG | + | chr3.3:7127044-7127063 | None:intergenic | 55.0% | |
| CTAAGAATCAGTTGGGGCCG+AGG | - | chr3.3:7127328-7127347 | MS.gene52041:CDS | 55.0% | |
| GTTGGGGAGGAATGGGAATG+AGG | - | chr3.3:7127515-7127534 | MS.gene52041:CDS | 55.0% | |
| ! | AGAAGCGGAGGGGATTTGGT+GGG | - | chr3.3:7127367-7127386 | MS.gene52041:CDS | 55.0% |
| ! | CTCGGCCCCAACTGATTCTT+AGG | + | chr3.3:7127330-7127349 | None:intergenic | 55.0% |
| !! | GTTGTTGTTGGTGGTGGTGG+TGG | + | chr3.3:7126884-7126903 | None:intergenic | 55.0% |
| !! | TGGGCTTCTGTGGTGGATGA+TGG | - | chr3.3:7127477-7127496 | MS.gene52041:CDS | 55.0% |
| !! | TTGGTGGTGGTGGTGGTGTT+GGG | + | chr3.3:7126877-7126896 | None:intergenic | 55.0% |
| CCGAAGAAGCGGAGGGGATT+TGG | - | chr3.3:7127363-7127382 | MS.gene52041:CDS | 60.0% | |
| CTCGGCTTAAGCGCGTGTGA+CGG | + | chr3.3:7127098-7127117 | None:intergenic | 60.0% | |
| GATTGGTGCGGAGCGGTTTG+AGG | - | chr3.3:7127446-7127465 | MS.gene52041:CDS | 60.0% | |
| !! | GGGGATTTGGTGGGTCTGGA+TGG | - | chr3.3:7127376-7127395 | MS.gene52041:CDS | 60.0% |
| !! | GTTGGTGGTGGTGGTGGTGT+TGG | + | chr3.3:7126878-7126897 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGTGGTGTTG+GGG | + | chr3.3:7126876-7126895 | None:intergenic | 60.0% |
| ACGCGCTATACGGCCGAAGG+TGG | + | chr3.3:7127058-7127077 | None:intergenic | 65.0% | |
| CACACGCGCTATACGGCCGA+AGG | + | chr3.3:7127061-7127080 | None:intergenic | 65.0% | |
| CGTCACACGCGCTTAAGCCG+AGG | - | chr3.3:7127096-7127115 | MS.gene52041:intron | 65.0% | |
| ! | GGTGGTGGTGTTGGGGGTTG+AGG | + | chr3.3:7126869-7126888 | None:intergenic | 65.0% |
| !! | CGGAGGGGATTTGGTGGGTC+TGG | - | chr3.3:7127372-7127391 | MS.gene52041:CDS | 65.0% |
| !! | GGTGGTGGTGGTGGTGTTGG+GGG | + | chr3.3:7126875-7126894 | None:intergenic | 65.0% |
| ATCAGTTGGGGCCGAGGGCG+AGG | - | chr3.3:7127334-7127353 | MS.gene52041:CDS | 70.0% | |
| CCCCTCCGCTTCTTCGGCTG+CGG | + | chr3.3:7127360-7127379 | None:intergenic | 70.0% | |
| CCGCAGCCGAAGAAGCGGAG+GGG | - | chr3.3:7127357-7127376 | MS.gene52041:CDS | 70.0% | |
| CGAGGCCGCAGCCGAAGAAG+CGG | - | chr3.3:7127352-7127371 | MS.gene52041:CDS | 70.0% | |
| GCCGCAGCCGAAGAAGCGGA+GGG | - | chr3.3:7127356-7127375 | MS.gene52041:CDS | 70.0% | |
| CGGCGCGTTGCGCGTCGTGA+CGG | + | chr3.3:7127146-7127165 | None:intergenic | 75.0% | |
| GGCCGCAGCCGAAGAAGCGG+AGG | - | chr3.3:7127355-7127374 | MS.gene52041:CDS | 75.0% | |
| GGCGCGTTGCGCGTCGTGAC+GGG | + | chr3.3:7127145-7127164 | None:intergenic | 75.0% | |
| TTCGGCTGCGGCCTCGCCCT+CGG | + | chr3.3:7127348-7127367 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 7126778 | 7128000 | 7126778 | ID=MS.gene52041 |
| chr3.3 | mRNA | 7126778 | 7128000 | 7126778 | ID=MS.gene52041.t1;Parent=MS.gene52041 |
| chr3.3 | exon | 7127189 | 7128000 | 7127189 | ID=MS.gene52041.t1.exon1;Parent=MS.gene52041.t1 |
| chr3.3 | CDS | 7127189 | 7128000 | 7127189 | ID=cds.MS.gene52041.t1;Parent=MS.gene52041.t1 |
| chr3.3 | exon | 7126778 | 7126799 | 7126778 | ID=MS.gene52041.t1.exon2;Parent=MS.gene52041.t1 |
| chr3.3 | CDS | 7126778 | 7126799 | 7126778 | ID=cds.MS.gene52041.t1;Parent=MS.gene52041.t1 |
| Gene Sequence |
| Protein sequence |
