Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52700.t1 | XP_003625319.1 | 96.8 | 218 | 7 | 0 | 1 | 218 | 1 | 218 | 2.30E-115 | 424.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52700.t1 | Q9SS03 | 42.3 | 194 | 105 | 3 | 1 | 192 | 1 | 189 | 1.7e-37 | 157.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52700.t1 | G7KWC7 | 96.8 | 218 | 7 | 0 | 1 | 218 | 1 | 218 | 1.7e-115 | 424.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050809 | MS.gene52700 | 0.808266 | 3.37E-50 | -1.69E-46 |
MS.gene051632 | MS.gene52700 | 0.813835 | 2.09E-51 | -1.69E-46 |
MS.gene052805 | MS.gene52700 | 0.800437 | 1.44E-48 | -1.69E-46 |
MS.gene054181 | MS.gene52700 | 0.80321 | 3.89E-49 | -1.69E-46 |
MS.gene054290 | MS.gene52700 | 0.834687 | 2.60E-56 | -1.69E-46 |
MS.gene055124 | MS.gene52700 | 0.815195 | 1.05E-51 | -1.69E-46 |
MS.gene055959 | MS.gene52700 | 0.911505 | 5.64E-83 | -1.69E-46 |
MS.gene057544 | MS.gene52700 | 0.838594 | 2.62E-57 | -1.69E-46 |
MS.gene058093 | MS.gene52700 | 0.865192 | 7.06E-65 | -1.69E-46 |
MS.gene058099 | MS.gene52700 | 0.837418 | 5.26E-57 | -1.69E-46 |
MS.gene058108 | MS.gene52700 | 0.80399 | 2.68E-49 | -1.69E-46 |
MS.gene058179 | MS.gene52700 | 0.861238 | 1.18E-63 | -1.69E-46 |
MS.gene059037 | MS.gene52700 | 0.850403 | 1.74E-60 | -1.69E-46 |
MS.gene059038 | MS.gene52700 | 0.862861 | 3.75E-64 | -1.69E-46 |
MS.gene059402 | MS.gene52700 | 0.824838 | 6.50E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52700.t1 | MTR_7g093870 | 96.789 | 218 | 7 | 0 | 1 | 218 | 1 | 218 | 1.10e-156 | 432 |
MS.gene52700.t1 | MTR_7g093820 | 57.219 | 187 | 72 | 4 | 8 | 193 | 15 | 194 | 7.79e-72 | 217 |
MS.gene52700.t1 | MTR_7g093850 | 56.150 | 187 | 74 | 4 | 8 | 193 | 15 | 194 | 3.97e-70 | 213 |
MS.gene52700.t1 | MTR_7g093790 | 51.531 | 196 | 87 | 4 | 1 | 193 | 1 | 191 | 1.44e-69 | 211 |
MS.gene52700.t1 | MTR_7g093830 | 54.545 | 187 | 77 | 4 | 8 | 193 | 14 | 193 | 1.95e-68 | 208 |
MS.gene52700.t1 | MTR_4g013335 | 52.727 | 165 | 70 | 3 | 30 | 193 | 39 | 196 | 6.49e-57 | 179 |
MS.gene52700.t1 | MTR_4g013320 | 55.128 | 156 | 65 | 2 | 38 | 193 | 49 | 199 | 6.51e-55 | 174 |
MS.gene52700.t1 | MTR_4g013330 | 51.923 | 156 | 72 | 1 | 38 | 193 | 47 | 199 | 1.79e-54 | 173 |
MS.gene52700.t1 | MTR_1g054525 | 50.588 | 170 | 76 | 4 | 25 | 193 | 30 | 192 | 4.37e-54 | 172 |
MS.gene52700.t1 | MTR_4g013325 | 54.667 | 150 | 63 | 2 | 44 | 193 | 55 | 199 | 5.60e-54 | 172 |
MS.gene52700.t1 | MTR_4g013350 | 53.503 | 157 | 66 | 3 | 38 | 193 | 47 | 197 | 8.23e-54 | 171 |
MS.gene52700.t1 | MTR_4g013345 | 50.909 | 165 | 75 | 3 | 30 | 193 | 37 | 196 | 7.02e-53 | 169 |
MS.gene52700.t1 | MTR_7g070390 | 46.114 | 193 | 93 | 4 | 6 | 193 | 6 | 192 | 1.93e-51 | 165 |
MS.gene52700.t1 | MTR_4g013310 | 49.704 | 169 | 77 | 4 | 26 | 193 | 36 | 197 | 2.50e-51 | 165 |
MS.gene52700.t1 | MTR_3g105640 | 47.093 | 172 | 87 | 3 | 22 | 193 | 21 | 188 | 3.25e-45 | 149 |
MS.gene52700.t1 | MTR_3g105630 | 45.026 | 191 | 100 | 4 | 4 | 193 | 3 | 189 | 4.69e-45 | 149 |
MS.gene52700.t1 | MTR_4g073950 | 43.030 | 165 | 90 | 2 | 29 | 193 | 32 | 192 | 2.37e-43 | 144 |
MS.gene52700.t1 | MTR_4g013770 | 42.857 | 168 | 91 | 3 | 26 | 193 | 29 | 191 | 2.16e-40 | 137 |
MS.gene52700.t1 | MTR_4g013385 | 44.231 | 156 | 81 | 3 | 38 | 193 | 41 | 190 | 2.93e-40 | 136 |
MS.gene52700.t1 | MTR_0433s0040 | 44.231 | 156 | 81 | 3 | 38 | 193 | 41 | 190 | 2.93e-40 | 136 |
MS.gene52700.t1 | MTR_1g056370 | 41.935 | 186 | 98 | 5 | 12 | 192 | 5 | 185 | 3.05e-40 | 136 |
MS.gene52700.t1 | MTR_5g096120 | 39.766 | 171 | 93 | 4 | 26 | 193 | 26 | 189 | 4.34e-36 | 125 |
MS.gene52700.t1 | MTR_4g078885 | 40.000 | 185 | 95 | 4 | 16 | 193 | 10 | 185 | 4.75e-36 | 125 |
MS.gene52700.t1 | MTR_3g034030 | 40.000 | 185 | 95 | 4 | 16 | 193 | 10 | 185 | 1.38e-35 | 124 |
MS.gene52700.t1 | MTR_4g013355 | 39.744 | 156 | 79 | 4 | 38 | 193 | 39 | 179 | 2.41e-34 | 121 |
MS.gene52700.t1 | MTR_4g122130 | 34.146 | 164 | 99 | 4 | 34 | 193 | 22 | 180 | 5.61e-22 | 89.0 |
MS.gene52700.t1 | MTR_4g122110 | 35.099 | 151 | 93 | 2 | 43 | 193 | 35 | 180 | 4.69e-21 | 86.7 |
MS.gene52700.t1 | MTR_4g049550 | 36.957 | 138 | 82 | 3 | 39 | 176 | 29 | 161 | 1.26e-20 | 85.5 |
MS.gene52700.t1 | MTR_4g049570 | 34.752 | 141 | 87 | 3 | 36 | 176 | 26 | 161 | 1.97e-18 | 79.7 |
MS.gene52700.t1 | MTR_8g099115 | 29.861 | 144 | 91 | 4 | 39 | 176 | 33 | 172 | 4.19e-13 | 65.9 |
MS.gene52700.t1 | MTR_1g046800 | 39.175 | 97 | 53 | 2 | 76 | 171 | 134 | 225 | 7.45e-12 | 63.2 |
MS.gene52700.t1 | MTR_1g046500 | 39.175 | 97 | 53 | 2 | 76 | 171 | 134 | 225 | 1.04e-11 | 62.8 |
MS.gene52700.t1 | MTR_1g046490 | 36.082 | 97 | 56 | 2 | 76 | 171 | 120 | 211 | 4.57e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52700.t1 | AT5G49040 | 41.538 | 195 | 104 | 5 | 4 | 193 | 2 | 191 | 7.06e-50 | 161 |
MS.gene52700.t1 | AT1G58170 | 45.783 | 166 | 85 | 3 | 28 | 193 | 25 | 185 | 8.71e-49 | 158 |
MS.gene52700.t1 | AT1G55210 | 48.718 | 156 | 72 | 3 | 38 | 193 | 40 | 187 | 1.89e-48 | 157 |
MS.gene52700.t1 | AT1G55210 | 48.718 | 156 | 72 | 3 | 38 | 193 | 40 | 187 | 1.89e-48 | 157 |
MS.gene52700.t1 | AT4G38700 | 42.328 | 189 | 101 | 4 | 10 | 193 | 5 | 190 | 4.63e-48 | 156 |
MS.gene52700.t1 | AT1G65870 | 47.239 | 163 | 81 | 2 | 30 | 192 | 32 | 189 | 7.56e-48 | 155 |
MS.gene52700.t1 | AT5G42500 | 48.734 | 158 | 72 | 4 | 36 | 192 | 36 | 185 | 3.49e-47 | 154 |
MS.gene52700.t1 | AT5G42510 | 45.349 | 172 | 84 | 5 | 22 | 192 | 20 | 182 | 5.36e-46 | 150 |
MS.gene52700.t1 | AT3G13650 | 40.659 | 182 | 96 | 4 | 16 | 193 | 13 | 186 | 1.37e-44 | 147 |
MS.gene52700.t1 | AT1G22900 | 46.386 | 166 | 81 | 5 | 27 | 192 | 36 | 193 | 3.92e-44 | 146 |
MS.gene52700.t1 | AT2G21110 | 43.915 | 189 | 88 | 5 | 8 | 193 | 13 | 186 | 1.29e-43 | 145 |
MS.gene52700.t1 | AT3G13662 | 42.208 | 154 | 80 | 4 | 28 | 180 | 27 | 172 | 5.57e-39 | 132 |
MS.gene52700.t1 | AT2G21100 | 43.506 | 154 | 82 | 3 | 39 | 192 | 39 | 187 | 6.64e-39 | 133 |
MS.gene52700.t1 | AT2G21100 | 43.506 | 154 | 82 | 3 | 39 | 192 | 39 | 187 | 6.64e-39 | 133 |
MS.gene52700.t1 | AT5G49030 | 40.223 | 179 | 97 | 5 | 4 | 177 | 2 | 175 | 2.27e-37 | 138 |
MS.gene52700.t1 | AT3G13660 | 48.361 | 122 | 60 | 1 | 72 | 193 | 7 | 125 | 2.34e-37 | 127 |
MS.gene52700.t1 | AT3G58090 | 39.655 | 174 | 81 | 3 | 19 | 192 | 122 | 271 | 8.88e-33 | 119 |
MS.gene52700.t1 | AT4G11190 | 23.392 | 171 | 111 | 4 | 1 | 166 | 1 | 156 | 1.85e-13 | 66.6 |
MS.gene52700.t1 | AT4G11210 | 24.432 | 176 | 123 | 4 | 1 | 176 | 1 | 166 | 3.16e-12 | 63.2 |
MS.gene52700.t1 | AT4G23690 | 28.571 | 133 | 83 | 4 | 38 | 166 | 36 | 160 | 7.85e-12 | 62.4 |
MS.gene52700.t1 | AT3G24020 | 36.449 | 107 | 58 | 3 | 76 | 176 | 127 | 229 | 1.47e-11 | 62.4 |
MS.gene52700.t1 | AT1G64160 | 25.197 | 127 | 91 | 2 | 48 | 174 | 41 | 163 | 2.51e-11 | 60.8 |
MS.gene52700.t1 | AT4G13580 | 37.383 | 107 | 57 | 3 | 76 | 176 | 128 | 230 | 3.68e-11 | 61.2 |
MS.gene52700.t1 | AT3G55230 | 32.258 | 124 | 78 | 3 | 76 | 193 | 181 | 304 | 4.88e-11 | 61.6 |
Find 71 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCTTGTGCTTTCCCAATT+TGG | 0.096700 | 7.2:-15647556 | None:intergenic |
TTCTTGCATGACATCGTTTC+TGG | 0.106804 | 7.2:+15647407 | MS.gene52700:CDS |
TCCCAATTTGGGTGGATTTA+AGG | 0.175039 | 7.2:-15647544 | None:intergenic |
GACCTTAAATCCACCCAAAT+TGG | 0.177007 | 7.2:+15647542 | MS.gene52700:CDS |
ACACAATTGGTGCCCCTATT+AGG | 0.182161 | 7.2:+15647693 | MS.gene52700:CDS |
GGATTTGGATTTACCGTTTA+AGG | 0.187128 | 7.2:-15647465 | None:intergenic |
ATAATTGGCATTTCCCTAAT+AGG | 0.189093 | 7.2:-15647707 | None:intergenic |
ATTTGGCTCCATAGTGGTTT+TGG | 0.224385 | 7.2:+15647496 | MS.gene52700:CDS |
TCCCCAGTTCCACCAATAAT+TGG | 0.240844 | 7.2:-15647722 | None:intergenic |
ATTAGGGAAATGCCAATTAT+TGG | 0.253601 | 7.2:+15647710 | MS.gene52700:CDS |
GGTATGATGGAGAAATATTT+TGG | 0.268450 | 7.2:-15647346 | None:intergenic |
TAATTGGCATTTCCCTAATA+GGG | 0.289357 | 7.2:-15647706 | None:intergenic |
ATTCGCACGTGGCTTTATTC+AGG | 0.291247 | 7.2:+15647751 | MS.gene52700:CDS |
GCTTGAATTGGAACTTGTTA+TGG | 0.298192 | 7.2:+15647607 | MS.gene52700:CDS |
GGTTAGGCATAATACGGTTT+TGG | 0.298877 | 7.2:-15647276 | None:intergenic |
ACCTTGTGCTTTCCCAATTT+GGG | 0.301649 | 7.2:-15647555 | None:intergenic |
GGTAGCACGCTTAGCGTGTT+AGG | 0.309608 | 7.2:+15647665 | MS.gene52700:CDS |
ATGCCAATTATTGGTGGAAC+TGG | 0.330971 | 7.2:+15647719 | MS.gene52700:CDS |
CACAATTGGTGCCCCTATTA+GGG | 0.332459 | 7.2:+15647694 | MS.gene52700:CDS |
CAGCTTCTTGAGACACTGTT+AGG | 0.362337 | 7.2:-15647583 | None:intergenic |
GATTTGGATTTACCGTTTAA+GGG | 0.381395 | 7.2:-15647464 | None:intergenic |
TAAGGGTGACTCAACTGATA+TGG | 0.387201 | 7.2:-15647447 | None:intergenic |
CTTGAATTGGAACTTGTTAT+GGG | 0.390234 | 7.2:+15647608 | MS.gene52700:CDS |
TCAAGAAGCTGTGCTTGAAT+TGG | 0.392492 | 7.2:+15647595 | MS.gene52700:CDS |
CACTCGGTTGATTTACATAT+AGG | 0.397244 | 7.2:+15647782 | MS.gene52700:CDS |
AAAGAGAAAGGTTGTGAAGA+AGG | 0.402614 | 7.2:-15647297 | None:intergenic |
GATATGGCTACGGTAGGCTT+TGG | 0.411837 | 7.2:-15647431 | None:intergenic |
GAAAGGTTGTGAAGAAGGTT+AGG | 0.438982 | 7.2:-15647292 | None:intergenic |
ACCTTAAATCCACCCAAATT+GGG | 0.442859 | 7.2:+15647543 | MS.gene52700:CDS |
CACTATGGAGCCAAATGGTA+AGG | 0.456004 | 7.2:-15647489 | None:intergenic |
ATTTGGGTGGATTTAAGGTC+AGG | 0.457298 | 7.2:-15647539 | None:intergenic |
ATATGGCTACGGTAGGCTTT+GGG | 0.459104 | 7.2:-15647430 | None:intergenic |
CTTACCATTTGGCTCCATAG+TGG | 0.460030 | 7.2:+15647490 | MS.gene52700:CDS |
TTCATGACTGAACCTTTGCT+TGG | 0.460351 | 7.2:+15647890 | MS.gene52700:CDS |
AGGTCAGGTCCAACGGTTAG+TGG | 0.461186 | 7.2:-15647524 | None:intergenic |
GAAGAAGGTTAGGCATAATA+CGG | 0.468865 | 7.2:-15647282 | None:intergenic |
TGTTTGAAACCAAGGTATGA+TGG | 0.477684 | 7.2:-15647359 | None:intergenic |
TGCCAATTATTGGTGGAACT+GGG | 0.479481 | 7.2:+15647720 | MS.gene52700:CDS |
GTGTTAGGGCGCAACACAAT+TGG | 0.490208 | 7.2:+15647680 | MS.gene52700:CDS |
TCAGTTGAGTCACCCTTAAA+CGG | 0.493781 | 7.2:+15647452 | MS.gene52700:CDS |
AGGGAAATGCCAATTATTGG+TGG | 0.506239 | 7.2:+15647713 | MS.gene52700:CDS |
TTGTGCTTTCCCAATTTGGG+TGG | 0.511217 | 7.2:-15647552 | None:intergenic |
AATATTTCTCCATCATACCT+TGG | 0.511675 | 7.2:+15647350 | MS.gene52700:CDS |
ATGACCTTTGCGTTTACAGA+AGG | 0.515477 | 7.2:+15647632 | MS.gene52700:CDS |
TGGGTCCTCCAAAACCACTA+TGG | 0.522548 | 7.2:-15647504 | None:intergenic |
TCTTCAGATGCTGACGTGGA+AGG | 0.525579 | 7.2:-15647845 | None:intergenic |
GTAGCACGCTTAGCGTGTTA+GGG | 0.528717 | 7.2:+15647666 | MS.gene52700:CDS |
AAAACCACTATGGAGCCAAA+TGG | 0.537854 | 7.2:-15647494 | None:intergenic |
CTTCAGATGCTGACGTGGAA+GGG | 0.538461 | 7.2:-15647844 | None:intergenic |
GTTTCTCTTGTTTGAAACCA+AGG | 0.539113 | 7.2:-15647367 | None:intergenic |
TTGGAGGACCCACTAACCGT+TGG | 0.539953 | 7.2:+15647515 | MS.gene52700:CDS |
GGATTTAAGGTCAGGTCCAA+CGG | 0.547162 | 7.2:-15647531 | None:intergenic |
ACTATGGAGCCAAATGGTAA+GGG | 0.549270 | 7.2:-15647488 | None:intergenic |
AACAAAGGAAGAAAAGAGAA+AGG | 0.563669 | 7.2:-15647309 | None:intergenic |
AACCTCTTCAGATGCTGACG+TGG | 0.568063 | 7.2:-15647849 | None:intergenic |
AATTGGCATTTCCCTAATAG+GGG | 0.570393 | 7.2:-15647705 | None:intergenic |
GCCAATTATTGGTGGAACTG+GGG | 0.575863 | 7.2:+15647721 | MS.gene52700:CDS |
GGTCAGGTCCAACGGTTAGT+GGG | 0.578675 | 7.2:-15647523 | None:intergenic |
GTAGTAAGTGGCGTTAACAA+AGG | 0.578840 | 7.2:-15647324 | None:intergenic |
TGACCTTTGCGTTTACAGAA+GGG | 0.580314 | 7.2:+15647633 | MS.gene52700:CDS |
AGTCATGAATCGACTTCCAT+CGG | 0.581651 | 7.2:-15647876 | None:intergenic |
ACCCAAATTGGGAAAGCACA+AGG | 0.589688 | 7.2:+15647554 | MS.gene52700:CDS |
TTCCACGTCAGCATCTGAAG+AGG | 0.600223 | 7.2:+15647847 | MS.gene52700:CDS |
TTTCCCTTCTGTAAACGCAA+AGG | 0.602749 | 7.2:-15647636 | None:intergenic |
CTATGGAGCCAAATGGTAAG+GGG | 0.605116 | 7.2:-15647487 | None:intergenic |
TGACTCAACTGATATGGCTA+CGG | 0.620936 | 7.2:-15647441 | None:intergenic |
TTTACAGAAGGGAAATTCAA+CGG | 0.628659 | 7.2:+15647644 | MS.gene52700:CDS |
TCAACTGATATGGCTACGGT+AGG | 0.661914 | 7.2:-15647437 | None:intergenic |
ACATATAGGTGATGCTCACG+TGG | 0.665288 | 7.2:+15647796 | MS.gene52700:CDS |
TATGGAGCCAAATGGTAAGG+GGG | 0.675031 | 7.2:-15647486 | None:intergenic |
GGGGAATTTAGATTCGCACG+TGG | 0.710990 | 7.2:+15647740 | MS.gene52700:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGAAATATTTTGGTAGTAAG+TGG | - | chr7.2:15647339-15647358 | None:intergenic | 25.0% |
AACAAAGGAAGAAAAGAGAA+AGG | - | chr7.2:15647312-15647331 | None:intergenic | 30.0% | |
AATATTTCTCCATCATACCT+TGG | + | chr7.2:15647350-15647369 | MS.gene52700:CDS | 30.0% | |
ATAATTGGCATTTCCCTAAT+AGG | - | chr7.2:15647710-15647729 | None:intergenic | 30.0% | |
ATTAGGGAAATGCCAATTAT+TGG | + | chr7.2:15647710-15647729 | MS.gene52700:CDS | 30.0% | |
GATTTGGATTTACCGTTTAA+GGG | - | chr7.2:15647467-15647486 | None:intergenic | 30.0% | |
TAATTGGCATTTCCCTAATA+GGG | - | chr7.2:15647709-15647728 | None:intergenic | 30.0% | |
TTTACAGAAGGGAAATTCAA+CGG | + | chr7.2:15647644-15647663 | MS.gene52700:CDS | 30.0% | |
!! | CTTGAATTGGAACTTGTTAT+GGG | + | chr7.2:15647608-15647627 | MS.gene52700:CDS | 30.0% |
!! | GGTATGATGGAGAAATATTT+TGG | - | chr7.2:15647349-15647368 | None:intergenic | 30.0% |
AAAGAGAAAGGTTGTGAAGA+AGG | - | chr7.2:15647300-15647319 | None:intergenic | 35.0% | |
AATTGGCATTTCCCTAATAG+GGG | - | chr7.2:15647708-15647727 | None:intergenic | 35.0% | |
ACCTTAAATCCACCCAAATT+GGG | + | chr7.2:15647543-15647562 | MS.gene52700:CDS | 35.0% | |
GAAGAAGGTTAGGCATAATA+CGG | - | chr7.2:15647285-15647304 | None:intergenic | 35.0% | |
GGATTTGGATTTACCGTTTA+AGG | - | chr7.2:15647468-15647487 | None:intergenic | 35.0% | |
TATTCAGGCAAAAACTCACT+CGG | + | chr7.2:15647766-15647785 | MS.gene52700:CDS | 35.0% | |
! | CACTCGGTTGATTTACATAT+AGG | + | chr7.2:15647782-15647801 | MS.gene52700:CDS | 35.0% |
! | GTTTCTCTTGTTTGAAACCA+AGG | - | chr7.2:15647370-15647389 | None:intergenic | 35.0% |
! | TGTTTGAAACCAAGGTATGA+TGG | - | chr7.2:15647362-15647381 | None:intergenic | 35.0% |
!! | GCTTGAATTGGAACTTGTTA+TGG | + | chr7.2:15647607-15647626 | MS.gene52700:CDS | 35.0% |
AAAACCACTATGGAGCCAAA+TGG | - | chr7.2:15647497-15647516 | None:intergenic | 40.0% | |
AACCTTGTGCTTTCCCAATT+TGG | - | chr7.2:15647559-15647578 | None:intergenic | 40.0% | |
ACCTTGTGCTTTCCCAATTT+GGG | - | chr7.2:15647558-15647577 | None:intergenic | 40.0% | |
ACTATGGAGCCAAATGGTAA+GGG | - | chr7.2:15647491-15647510 | None:intergenic | 40.0% | |
AGGGAAATGCCAATTATTGG+TGG | + | chr7.2:15647713-15647732 | MS.gene52700:CDS | 40.0% | |
ATGACCTTTGCGTTTACAGA+AGG | + | chr7.2:15647632-15647651 | MS.gene52700:CDS | 40.0% | |
ATGCCAATTATTGGTGGAAC+TGG | + | chr7.2:15647719-15647738 | MS.gene52700:CDS | 40.0% | |
CGATGTCATGCAAGAAAAAG+TGG | - | chr7.2:15647403-15647422 | None:intergenic | 40.0% | |
GAAAGGTTGTGAAGAAGGTT+AGG | - | chr7.2:15647295-15647314 | None:intergenic | 40.0% | |
GACCTTAAATCCACCCAAAT+TGG | + | chr7.2:15647542-15647561 | MS.gene52700:CDS | 40.0% | |
GTAGTAAGTGGCGTTAACAA+AGG | - | chr7.2:15647327-15647346 | None:intergenic | 40.0% | |
TAAGGGTGACTCAACTGATA+TGG | - | chr7.2:15647450-15647469 | None:intergenic | 40.0% | |
TCAAGAAGCTGTGCTTGAAT+TGG | + | chr7.2:15647595-15647614 | MS.gene52700:CDS | 40.0% | |
TCAGTTGAGTCACCCTTAAA+CGG | + | chr7.2:15647452-15647471 | MS.gene52700:CDS | 40.0% | |
TGACCTTTGCGTTTACAGAA+GGG | + | chr7.2:15647633-15647652 | MS.gene52700:CDS | 40.0% | |
TGACTCAACTGATATGGCTA+CGG | - | chr7.2:15647444-15647463 | None:intergenic | 40.0% | |
TGCCAATTATTGGTGGAACT+GGG | + | chr7.2:15647720-15647739 | MS.gene52700:CDS | 40.0% | |
TTCATGACTGAACCTTTGCT+TGG | + | chr7.2:15647890-15647909 | MS.gene52700:CDS | 40.0% | |
TTCTTGCATGACATCGTTTC+TGG | + | chr7.2:15647407-15647426 | MS.gene52700:CDS | 40.0% | |
TTTCCCTTCTGTAAACGCAA+AGG | - | chr7.2:15647639-15647658 | None:intergenic | 40.0% | |
! | AGTCATGAATCGACTTCCAT+CGG | - | chr7.2:15647879-15647898 | None:intergenic | 40.0% |
! | ATTTGGGTGGATTTAAGGTC+AGG | - | chr7.2:15647542-15647561 | None:intergenic | 40.0% |
! | GGTTAGGCATAATACGGTTT+TGG | - | chr7.2:15647279-15647298 | None:intergenic | 40.0% |
! | TCCCAATTTGGGTGGATTTA+AGG | - | chr7.2:15647547-15647566 | None:intergenic | 40.0% |
!! | ATTTGGCTCCATAGTGGTTT+TGG | + | chr7.2:15647496-15647515 | MS.gene52700:CDS | 40.0% |
ACATATAGGTGATGCTCACG+TGG | + | chr7.2:15647796-15647815 | MS.gene52700:CDS | 45.0% | |
ATATGGCTACGGTAGGCTTT+GGG | - | chr7.2:15647433-15647452 | None:intergenic | 45.0% | |
CACTATGGAGCCAAATGGTA+AGG | - | chr7.2:15647492-15647511 | None:intergenic | 45.0% | |
CAGCTTCTTGAGACACTGTT+AGG | - | chr7.2:15647586-15647605 | None:intergenic | 45.0% | |
CTATGGAGCCAAATGGTAAG+GGG | - | chr7.2:15647490-15647509 | None:intergenic | 45.0% | |
GCCAATTATTGGTGGAACTG+GGG | + | chr7.2:15647721-15647740 | MS.gene52700:CDS | 45.0% | |
TATGGAGCCAAATGGTAAGG+GGG | - | chr7.2:15647489-15647508 | None:intergenic | 45.0% | |
TCAACTGATATGGCTACGGT+AGG | - | chr7.2:15647440-15647459 | None:intergenic | 45.0% | |
TCCAAATCCCCCTTACCATT+TGG | + | chr7.2:15647479-15647498 | MS.gene52700:CDS | 45.0% | |
TCCCCAGTTCCACCAATAAT+TGG | - | chr7.2:15647725-15647744 | None:intergenic | 45.0% | |
TTGTGCTTTCCCAATTTGGG+TGG | - | chr7.2:15647555-15647574 | None:intergenic | 45.0% | |
! | ACACAATTGGTGCCCCTATT+AGG | + | chr7.2:15647693-15647712 | MS.gene52700:CDS | 45.0% |
! | ACCCAAATTGGGAAAGCACA+AGG | + | chr7.2:15647554-15647573 | MS.gene52700:CDS | 45.0% |
! | CACAATTGGTGCCCCTATTA+GGG | + | chr7.2:15647694-15647713 | MS.gene52700:CDS | 45.0% |
! | CTTACCATTTGGCTCCATAG+TGG | + | chr7.2:15647490-15647509 | MS.gene52700:CDS | 45.0% |
! | GGATTTAAGGTCAGGTCCAA+CGG | - | chr7.2:15647534-15647553 | None:intergenic | 45.0% |
! | TCTGAAGAGGTTTTTGCCGA+TGG | + | chr7.2:15647860-15647879 | MS.gene52700:CDS | 45.0% |
!! | ATTCGCACGTGGCTTTATTC+AGG | + | chr7.2:15647751-15647770 | MS.gene52700:CDS | 45.0% |
AACCTCTTCAGATGCTGACG+TGG | - | chr7.2:15647852-15647871 | None:intergenic | 50.0% | |
CTTCAGATGCTGACGTGGAA+GGG | - | chr7.2:15647847-15647866 | None:intergenic | 50.0% | |
GATATGGCTACGGTAGGCTT+TGG | - | chr7.2:15647434-15647453 | None:intergenic | 50.0% | |
GCCAAATGGTAAGGGGGATT+TGG | - | chr7.2:15647483-15647502 | None:intergenic | 50.0% | |
GGGGAATTTAGATTCGCACG+TGG | + | chr7.2:15647740-15647759 | MS.gene52700:CDS | 50.0% | |
GTAGCACGCTTAGCGTGTTA+GGG | + | chr7.2:15647666-15647685 | MS.gene52700:CDS | 50.0% | |
GTGTTAGGGCGCAACACAAT+TGG | + | chr7.2:15647680-15647699 | MS.gene52700:CDS | 50.0% | |
TCTTCAGATGCTGACGTGGA+AGG | - | chr7.2:15647848-15647867 | None:intergenic | 50.0% | |
TGGGTCCTCCAAAACCACTA+TGG | - | chr7.2:15647507-15647526 | None:intergenic | 50.0% | |
TTCCACGTCAGCATCTGAAG+AGG | + | chr7.2:15647847-15647866 | MS.gene52700:CDS | 50.0% | |
!!! | TGGCTCCATAGTGGTTTTGG+AGG | + | chr7.2:15647499-15647518 | MS.gene52700:CDS | 50.0% |
AGGTCAGGTCCAACGGTTAG+TGG | - | chr7.2:15647527-15647546 | None:intergenic | 55.0% | |
GGTAGCACGCTTAGCGTGTT+AGG | + | chr7.2:15647665-15647684 | MS.gene52700:CDS | 55.0% | |
GGTCAGGTCCAACGGTTAGT+GGG | - | chr7.2:15647526-15647545 | None:intergenic | 55.0% | |
TTGGAGGACCCACTAACCGT+TGG | + | chr7.2:15647515-15647534 | MS.gene52700:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 15647266 | 15647922 | 15647266 | ID=MS.gene52700 |
chr7.2 | mRNA | 15647266 | 15647922 | 15647266 | ID=MS.gene52700.t1;Parent=MS.gene52700 |
chr7.2 | exon | 15647266 | 15647922 | 15647266 | ID=MS.gene52700.t1.exon1;Parent=MS.gene52700.t1 |
chr7.2 | CDS | 15647266 | 15647922 | 15647266 | ID=cds.MS.gene52700.t1;Parent=MS.gene52700.t1 |
Gene Sequence |
Protein sequence |