AlfalfaGEDB | MS.gene52873

M. sativa cultivar XinJiangDaYe / MS.gene52873

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52873.t1	KEH25981.1	72.9	1153	178	5	1	1023	1	1149	7.10E-300	1040

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52873.t1	Q6JN46	40.3	1038	543	17	17	1022	17	1009	2.2e-55	219.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52873.t1	A0A072U9B3	72.9	1153	178	5	1	1023	1	1149	5.1e-300	1040.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051980	MS.gene52873	0.805054	1.61E-49	-1.69E-46
MS.gene053169	MS.gene52873	0.801222	9.97E-49	-1.69E-46
MS.gene054183	MS.gene52873	0.809553	1.79E-50	-1.69E-46
MS.gene054556	MS.gene52873	0.818511	1.89E-52	-1.69E-46
MS.gene056514	MS.gene52873	0.809909	1.50E-50	-1.69E-46
MS.gene057609	MS.gene52873	0.839221	1.80E-57	-1.69E-46
MS.gene057610	MS.gene52873	0.835321	1.80E-56	-1.69E-46
MS.gene058651	MS.gene52873	0.836627	8.38E-57	-1.69E-46
MS.gene058949	MS.gene52873	0.847243	1.31E-59	-1.69E-46
MS.gene059420	MS.gene52873	0.828127	1.07E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52873.t1	MTR_6g039110	72.727	1078	229	8	8	1022	8	1083	0.0	1483
MS.gene52873.t1	MTR_6g038670	69.231	1118	249	8	1	1023	1	1118	0.0	1477
MS.gene52873.t1	MTR_6g038730	68.194	1157	226	14	1	1023	1	1149	0.0	1458
MS.gene52873.t1	MTR_6g038940	68.504	1143	210	11	1	1023	4	1116	0.0	1431
MS.gene52873.t1	MTR_6g039180	71.774	992	220	10	90	1023	193	1182	0.0	1327
MS.gene52873.t1	MTR_6g039180	47.191	89	47	0	837	925	141	229	4.97e-13	74.3
MS.gene52873.t1	MTR_6g037750	67.258	1014	247	10	90	1023	193	1201	0.0	1249
MS.gene52873.t1	MTR_6g037750	36.029	136	75	1	802	925	118	253	9.46e-14	76.6
MS.gene52873.t1	MTR_6g038700	68.049	989	253	9	96	1023	246	1232	0.0	1248
MS.gene52873.t1	MTR_6g038700	48.315	89	46	0	837	925	164	252	9.08e-14	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52873.t1	AT2G34930	32.792	985	487	25	31	954	32	902	6.97e-121	392
MS.gene52873.t1	AT2G15080	31.138	1063	560	34	13	1008	10	967	6.12e-101	340
MS.gene52873.t1	AT2G15080	31.138	1063	560	34	13	1008	10	967	6.12e-101	340
MS.gene52873.t1	AT3G11010	31.267	1081	544	36	7	1022	6	952	2.69e-100	338
MS.gene52873.t1	AT3G11010	32.122	1018	513	34	50	1022	5	889	2.66e-99	333
MS.gene52873.t1	AT3G11010	30.769	1066	545	34	7	1022	6	928	1.45e-97	330
MS.gene52873.t1	AT3G11010	31.238	1002	519	31	50	1022	5	865	9.19e-97	326
MS.gene52873.t1	AT3G11010	30.206	1066	542	35	7	1022	6	919	2.42e-91	312
MS.gene52873.t1	AT3G11010	30.539	1002	517	32	50	1022	5	856	1.87e-90	308
MS.gene52873.t1	AT1G74170	29.677	1085	623	36	13	1022	10	1029	1.07e-87	305

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Find 177 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGAAAGAGACTCCAA+TGG	0.614587	6.1:+20678953	None:intergenic
AACTGCAAGCATTACTATTG+AGG	0.491975	6.1:-20677035	MS.gene52873:CDS
AAGATTATCTTCATAAAATG+AGG	0.530313	6.1:+20676300	None:intergenic
AATAACAATTTGAAAGATCA+AGG	0.486913	6.1:+20678996	None:intergenic
AATATAGATTGAATCACAAG+TGG	0.570598	6.1:+20679391	None:intergenic
AATCTACAAGAGCTTTATCT+TGG	0.365783	6.1:-20678719	MS.gene52873:CDS
AATGAGAATATTGAGAGATC+AGG	0.485114	6.1:+20677783	None:intergenic
AATGGCAAGTTGCTACCTTC+AGG	0.437093	6.1:+20678017	None:intergenic
AATGGTATAGATGTAATGTT+AGG	0.451971	6.1:-20677195	MS.gene52873:CDS
AATTCACTTCCAATCCAATA+AGG	0.243730	6.1:+20676916	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAGAATATTGAGAGATC+AGG	+	chr6.1:20677677-20677696	None:intergenic	30.0%
AATTCACTTCCAATCCAATA+AGG	+	chr6.1:20678544-20678563	None:intergenic	30.0%
ACATTGACATACCAGATAAT+TGG	+	chr6.1:20677826-20677845	None:intergenic	30.0%
ACTCAAAAATATTCACCAGA+TGG	-	chr6.1:20678718-20678737	MS.gene52873:CDS	30.0%
AGAAGTGGAAAAGTTGAAAT+TGG	+	chr6.1:20676991-20677010	None:intergenic	30.0%
ATATTCATGTGAAATGCAGA+TGG	-	chr6.1:20679403-20679422	MS.gene52873:CDS	30.0%
ATTCACTTCCAATCCAATAA+GGG	+	chr6.1:20678543-20678562	None:intergenic	30.0%
ATTCTTCACAATTTGTCTAG+TGG	-	chr6.1:20677287-20677306	MS.gene52873:CDS	30.0%
CATGATTATAATCACCATGA+AGG	+	chr6.1:20676299-20676318	None:intergenic	30.0%
CATTGAGATTTACTGAAAAC+TGG	-	chr6.1:20677879-20677898	MS.gene52873:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	20676051	20679428	20676051	ID=MS.gene52873
chr6.1	mRNA	20676051	20679428	20676051	ID=MS.gene52873.t1;Parent=MS.gene52873
chr6.1	exon	20678663	20679428	20678663	ID=MS.gene52873.t1.exon1;Parent=MS.gene52873.t1
chr6.1	CDS	20678663	20679428	20678663	ID=cds.MS.gene52873.t1;Parent=MS.gene52873.t1
chr6.1	exon	20676051	20678356	20676051	ID=MS.gene52873.t1.exon2;Parent=MS.gene52873.t1
chr6.1	CDS	20676051	20678356	20676051	ID=cds.MS.gene52873.t1;Parent=MS.gene52873.t1

Gene Sequence

>MS.gene52873

ATGTCAATTATAAATCCACTTGTGATTCAATCTATATTTCTCATTTGTTTGGTGTTGCAAGCAGACTTTGTTTGTTCAAAGGAGGTTGTTAGGTGCATTCAAAGTGAGAGGAAAGCACTTCTTCAATTCAAGGCTGGCCTTATTGATGAATCTGACAACATGTTCTCATCTTGGACGACAGAAGATTGCTGCCAATGGAAGGGAGTTGGTTGCAGCAACGTCACTGGTCATGTACTTATGCTCAACCTTCATGGTGATTATAATCATGATTATAATAATTACTATATCAGCGGTGATATCCACAAGTCATTGATGGAGTTGCAACAATTACAATACTTGAACCTCAGCGGAAATAATTTTAGAAAGAGTATTCTCCCAGGTTTCATTGGATCTGTAAGAAACCTAAGATACCTTGATCTTTCAAATTGTTATTTTGAAGGACAAATTCCTATTCCATTGGAGTCTCTTTCACATTTGAAATACTTGAATCTTTCCAACAATCGTCTAGATGGTGTGATTCCTCATCAACTTGGAGATCTCTCCAACTTGCAATTTCTTGATCTCAGCCACAATTATTTTGGAGGAAGTATTCCATCTCAACTTGGAAATCTTTCCAACTTGCAATTTCTTGATCTCAACAACAATTATTTGGAAGGAAGCATTCCATCTCAACTTGGAAAGCTTATGAATCTACAAGAGCTTTATCTTGGAATTAATGCATATTTAAGTACTGCTCTGACAATTGGCAGCAGGGATCATAATGGAGGTCAGTGGTTGTCTAATCTTACTTCTTTAACCCATCTTCACATGTGGTCGATATCTAATCTTAATAAATCTAATAGTTGGTTCCAAATGGTTGGTAAGTTGCCAAAATTGAGAGAACTTAGTTTAAGAATTTGTGACCTTTCTGATCATTTTATCCATTCTCTGAGTCAATCCAATTTCAACTTTTCCACTTCTCTTTCTATCCTTGATCTCTCTGAAAATAACTTTATGTCACCTTTGATATTTAAGTGGGTGTCAAACATAAGTTCCAACCTTGTTGAGCTTGACCTTTCTTTCAACTTTTTAGAGGCTCCTCCATCAAGTGACTATGCCATAGTGATGAAGTCTCTTGAGAGACTTGACCTATCAGGTAATAAATTAAAGGATGAGGTGTTTAAATCCTTCATGAATATATGCACCTTACGTTCTTTAAATCTGAATGGAAACAATTTTACAAAAGACCTTCAAACAATTCTTCACAATTTGTCTAGTGGTTGTGTTAGAAACTCACTTCAAGTGTTAGACCTCAATGTTAATGGAATCACTGGAACATTACCCGACCTTTCCGCATTCACATCATTGAAATCATTGGACCTTTTTGACAATAAGCTGAGTGGAAAGATTCCTGAAGGTAGCAACTTGCCATTTCAGTTGGAGAGTTTATCCATTGCATCAAACTCTCTAGAAGGAGTAATTCCTAAATCATTTTGGATTAATGCATGTAAGTTGAAATCATTGGACCTGTCCAATAACAGTTTCAGTGGTGAGCTTCAAGTATTAATTCACCACTTATCTAGATGTGCTAGATACTCACTTCAACAATTAGATCTAAGCAGTAATCAAATCAATGGCACACTACCTGATCTCTCAATATTCTCATTTTTGGAAATATTTGATATTTCTAAAAACAGACTAAACGGGAAGATATTTGAAGATATTCGATTTCCCACTACACTAAGGAAACTTAAAATGAATTTGAACTCTTTAAGTGGTGTGATCTCTGACTTCCAATTATCTGGTATGTCAATGTTAAGATATTTATATTTGTCTGACAACTCACTAGCATTGAGATTTACTGAAAACTGGGTACCACCATTTCAACTGGACACTATAGGATTGAGATCGTGCAAACTTGGACCTACATTTCCTAAATGGATTCAGACACAAAAACACATGCTGGATCTTGATATTTCGAATGCTGGAATTTCAGATAATGTTCCAGAGTGGTTTTGGGCTAAACTATCATCACAAGAGTGCAACAGCATCAACATTTCAAACAATAATCTCAAAGGATTAATTCCAAATCTTCAAGTAAAAAATTATTGTTCTATTTTATCTCTTTCCTCAAATGAATTTGAAGGTCCCATTCCTCCATTTATACAAGGTTCCCATGTTATTGACCTGTCCAAAAACAAATTCTCTGATTCTCTTCCATTCTTATGTGAAAATGGTATAGATGTAATGTTAGGCCAGTTTGACCTTTCGAATAATCAATTATCTGGACGAATTCCAGATTGTTGGTGCAATTTCAAGTCATTAGCTTATCTAGATTTGAGCCACAACAATTTTTCAGGGAAGATTCCTTCTTCAATGGGATCACTTGTTCAACTGCAAGCATTACTATTGAGGAACAACAGCTTAACAGAGGAGATCCCTTTCTCCTTAATGAACTGCATACAATTAGTAATGCTTGATATGAGAGAAAATAGATTAGAAGGACTCATCCCTTATTGGATTGGAAGTGAATTAAAAGATCTACAAATTTTAAGCTTACAAAGGAATCATTTCTTTGGAAGTTTACCATTTGAACTTTGCCATCTACAAAATATTCAACTCTTTGATCTCTCATTGAACAACCTCTCTGGGAAAATTCCTAAATGCATTAAAAGTTTCACTTCAATGACTCAAAAATATTCACCAGATGGTTTTATCAGTCATTCTTATTTTATCAACCAAGGATCTACGACCTTTGAAAATGGCTATGAATTGAGTGCATTTTTTACATGGAAAGGTGTAGAACAACTGTTCAACAACAATGGATTGTTACTTCTAAAAAGCATAGATCTCTCAAGCAATCACTTTTCAGGAGAGATTCCACCTGAAATAGCAAATTTGATTCAATTGATCTCATTGAATTTATCAAGAAACAACTTGACAGGGAAAATTCCTTCAAATATTGGAAAGCTAACATCACTTGACTTTCTTGATTTGTCCCGAAACAAGTTGCTTGGTTCAATTCCTTCTAGTCTTTCCCAAATAGATCGGCTTGGTGTGTTAGATTTGTCACATAATCAATTATCTGGAGAAATTCCAACGAGTACACAACTACAAAGTTTCAATGCCTCATTTTATGAAGATAATCTTGATCTTTGTGGTCCACCACTTGTAAAATTGTGTGCTCAGGGCGAGCCACCACATGAACCGAAAGTTGAAATTCAAGACGATGAAGATTTGCTTCTCAATCGTGGATTTTACATCAGTCTGACATTCGGATTTATTATAGGCTTCTGGGGAGTGTTTGGCTCAATCCTAATCAAGCGCTCTTGGAGACATGCTTACTTCAAGTTCATGAACAATGTAGCGGATAATATTCATGTGAAATGCAGATGGTAG

Protein sequence

>MS.gene52873.t1

MSIINPLVIQSIFLICLVLQADFVCSKEVVRCIQSERKALLQFKAGLIDESDNMFSSWTTEDCCQWKGVGCSNVTGHVLMLNLHGDYNHDYNNYYISGDIHKSLMELQQLQYLNLSGNNFRKSILPGFIGSVRNLRYLDLSNCYFEGQIPIPLESLSHLKYLNLSNNRLDGVIPHQLGDLSNLQFLDLSHNYFGGSIPSQLGNLSNLQFLDLNNNYLEGSIPSQLGKLMNLQELYLGINAYLSTALTIGSRDHNGEAPPSSDYAIVMKSLERLDLSGNKLKDEVFKSFMNICTLRSLNLNGNNFTKDLQTILHNLSSGCVRNSLQVLDLNVNGITGTLPDLSAFTSLKSLDLFDNKLSGKIPEGSNLPFQLESLSIASNSLEGVIPKSFWINACKLKSLDLSNNSFSGELQVLIHHLSRCARYSLQQLDLSSNQINGTLPDLSIFSFLEIFDISKNRLNGKIFEDIRFPTTLRKLKMNLNSLSGVISDFQLSGMSMLRYLYLSDNSLALRFTENWVPPFQLDTIGLRSCKLGPTFPKWIQTQKHMLDLDISNAGISDNVPEWFWAKLSSQECNSINISNNNLKGLIPNLQVKNYCSILSLSSNEFEGPIPPFIQGSHVIDLSKNKFSDSLPFLCENGIDVMLGQFDLSNNQLSGRIPDCWCNFKSLAYLDLSHNNFSGKIPSSMGSLVQLQALLLRNNSLTEEIPFSLMNCIQLVMLDMRENRLEGLIPYWIGSELKDLQILSLQRNHFFGSLPFELCHLQNIQLFDLSLNNLSGKIPKCIKSFTSMTQKYSPDGFISHSYFINQGSTTFENGYELSAFFTWKGVEQLFNNNGLLLLKSIDLSSNHFSGEIPPEIANLIQLISLNLSRNNLTGKIPSNIGKLTSLDFLDLSRNKLLGSIPSSLSQIDRLGVLDLSHNQLSGEIPTSTQLQSFNASFYEDNLDLCGPPLVKLCAQGEPPHEPKVEIQDDEDLLLNRGFYISLTFGFIIGFWGVFGSILIKRSWRHAYFKFMNNVADNIHVKCRW