Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53952.t1 | XP_013458796.1 | 96.6 | 204 | 7 | 0 | 1 | 204 | 1 | 204 | 3.00E-101 | 377.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53952.t1 | A0A072UUU4 | 96.6 | 204 | 7 | 0 | 1 | 204 | 1 | 204 | 2.2e-101 | 377.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050438 | MS.gene53952 | 0.80255 | 5.32E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene53952 | 0.849249 | 3.65E-60 | -1.69E-46 |
| MS.gene050721 | MS.gene53952 | 0.847965 | 8.28E-60 | -1.69E-46 |
| MS.gene050724 | MS.gene53952 | 0.852501 | 4.43E-61 | -1.69E-46 |
| MS.gene050815 | MS.gene53952 | 0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene53952 | 0.814078 | 1.85E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene53952 | 0.802828 | 4.66E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene53952 | 0.816541 | 5.24E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene53952 | 0.803362 | 3.62E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene53952 | 0.815801 | 7.68E-52 | -1.69E-46 |
| MS.gene059317 | MS.gene53952 | 0.80545 | 1.33E-49 | -1.69E-46 |
| MS.gene060165 | MS.gene53952 | 0.817564 | 3.09E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene53952 | 0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene060619 | MS.gene53952 | 0.810887 | 9.22E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53952.t1 | MTR_3g006790 | 96.569 | 204 | 7 | 0 | 1 | 204 | 1 | 204 | 1.00e-146 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53952.t1 | AT5G04910 | 69.231 | 182 | 56 | 0 | 23 | 204 | 41 | 222 | 2.02e-83 | 247 |
Find 41 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAGAAGATTTGGAATT+TGG | 0.083112 | 3.2:-1520669 | MS.gene53952:CDS |
| ACGAAGCAAAACAACGATTT+TGG | 0.221401 | 3.2:+1520599 | None:intergenic |
| CGGAGTGATGGAAGAAGATT+TGG | 0.282022 | 3.2:-1520676 | None:intergenic |
| AAGGAGATCACTGAAGCTTC+TGG | 0.308239 | 3.2:-1517754 | MS.gene53952:CDS |
| CATGACTTCTGGAGGGGAAT+TGG | 0.328109 | 3.2:-1519352 | MS.gene53952:CDS |
| TGGAAGAAGATTTGGAATTT+GGG | 0.347258 | 3.2:-1520668 | MS.gene53952:CDS |
| CCTGTTCTTGAACAGCTCTA+AGG | 0.384342 | 3.2:+1519099 | None:intergenic |
| AGATCAATGCGGCTATAGTC+AGG | 0.401278 | 3.2:+1519131 | None:intergenic |
| TTGTAAATTTGCAATTATCA+TGG | 0.426145 | 3.2:+1517806 | None:intergenic |
| CCTTAGAGCTGTTCAAGAAC+AGG | 0.429245 | 3.2:-1519099 | MS.gene53952:CDS |
| AGATTTGGAATTTGGGAAGA+AGG | 0.436083 | 3.2:-1520661 | MS.gene53952:CDS |
| AAGCTTATTCCAAACTCAAA+AGG | 0.441845 | 3.2:-1520545 | MS.gene53952:intron |
| GCATGAGTGTGTCCATGTTA+AGG | 0.447012 | 3.2:-1517773 | MS.gene53952:CDS |
| CCGCTTTCTTTAACAGCTGA+AGG | 0.459259 | 3.2:+1517854 | None:intergenic |
| ATCATGGCTTACCAGTCGTT+CGG | 0.468178 | 3.2:+1517822 | None:intergenic |
| TTGGCTTATCAGCAGCTTTG+CGG | 0.476285 | 3.2:-1519333 | MS.gene53952:CDS |
| GAAACAACGACTCCATTTCA+CGG | 0.488812 | 3.2:+1519159 | None:intergenic |
| TGAAGCTATTAGAGGTGTCC+AGG | 0.497762 | 3.2:-1517686 | MS.gene53952:CDS |
| TGGACACACTCATGCTCTGT+TGG | 0.499630 | 3.2:+1517781 | None:intergenic |
| TTTAGCATAGGTCCGTGAAA+TGG | 0.500168 | 3.2:-1519171 | MS.gene53952:intron |
| AGGAGATCACTGAAGCTTCT+GGG | 0.504065 | 3.2:-1517753 | MS.gene53952:CDS |
| GGAAAAGCAGAAACTACATC+TGG | 0.524115 | 3.2:-1519078 | MS.gene53952:intron |
| TGATGACCATGACAGCATCC+TGG | 0.539396 | 3.2:+1517668 | None:intergenic |
| GGGTCGGCCATCCGAACGAC+TGG | 0.546391 | 3.2:-1517833 | MS.gene53952:CDS |
| AGGTGTCCAGGATGCTGTCA+TGG | 0.560024 | 3.2:-1517674 | MS.gene53952:CDS |
| CTTCAGCTGTTAAAGAAAGC+GGG | 0.562359 | 3.2:-1517853 | MS.gene53952:CDS |
| CTTCAGTGATCTCCTTAACA+TGG | 0.563538 | 3.2:+1517761 | None:intergenic |
| GCTGTGAATGAAGCTATTAG+AGG | 0.564398 | 3.2:-1517694 | MS.gene53952:CDS |
| GCTTATCAGCAGCTTTGCGG+TGG | 0.567237 | 3.2:-1519330 | MS.gene53952:CDS |
| CCTTCAGCTGTTAAAGAAAG+CGG | 0.588320 | 3.2:-1517854 | MS.gene53952:CDS |
| TGGGACTGAAGAAGCAGAAG+CGG | 0.588338 | 3.2:-1517734 | MS.gene53952:CDS |
| ATTCACAGCATTATCATACT+CGG | 0.588368 | 3.2:+1517708 | None:intergenic |
| CGCTTTCTTTAACAGCTGAA+GGG | 0.591750 | 3.2:+1517855 | None:intergenic |
| CTGACTACATGACTTCTGGA+GGG | 0.596770 | 3.2:-1519359 | MS.gene53952:CDS |
| TCTGACTACATGACTTCTGG+AGG | 0.598390 | 3.2:-1519360 | MS.gene53952:CDS |
| TGGCTTACCAGTCGTTCGGA+TGG | 0.598843 | 3.2:+1517826 | None:intergenic |
| TGACTACATGACTTCTGGAG+GGG | 0.607829 | 3.2:-1519358 | MS.gene53952:CDS |
| GATCAATGCGGCTATAGTCA+GGG | 0.644027 | 3.2:+1519132 | None:intergenic |
| TTCGATAAACGACAACACAA+TGG | 0.647345 | 3.2:-1520637 | MS.gene53952:CDS |
| AGCTGTTAAAGAAAGCGGGT+CGG | 0.673250 | 3.2:-1517849 | MS.gene53952:CDS |
| GGATTTGTGCTAGATCAATG+CGG | 0.738873 | 3.2:+1519120 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATTATAGTTGATTAAA+TGG | + | chr3.2:1519532-1519551 | None:intergenic | 15.0% |
| !! | TAAAAGAAAACAATAATGTT+AGG | + | chr3.2:1519028-1519047 | None:intergenic | 15.0% |
| !! | TTGTATTATGAAAATTCATA+CGG | - | chr3.2:1518812-1518831 | MS.gene53952:intron | 15.0% |
| !!! | TTAAATTTCTAGATTTATGT+TGG | - | chr3.2:1518706-1518725 | MS.gene53952:intron | 15.0% |
| !! | AAAAAAACAGTAATGATTTG+AGG | - | chr3.2:1520140-1520159 | MS.gene53952:intron | 20.0% |
| !! | AAAAAACAGTAATGATTTGA+GGG | - | chr3.2:1520141-1520160 | MS.gene53952:intron | 20.0% |
| !! | AATACAAAACACTTGAATTT+AGG | + | chr3.2:1520376-1520395 | None:intergenic | 20.0% |
| !! | GTTAAAATATTAGTTAAACC+TGG | - | chr3.2:1519673-1519692 | MS.gene53952:intron | 20.0% |
| !! | TTCTTAAGGTAATACTATTA+GGG | + | chr3.2:1519985-1520004 | None:intergenic | 20.0% |
| !! | TTGAACAAACATGAAATTAA+AGG | + | chr3.2:1519630-1519649 | None:intergenic | 20.0% |
| !! | TTGTAAATTTGCAATTATCA+TGG | + | chr3.2:1520481-1520500 | None:intergenic | 20.0% |
| !! | TTTCTTAAGGTAATACTATT+AGG | + | chr3.2:1519986-1520005 | None:intergenic | 20.0% |
| !!! | AAGCTGATTTAACTTAAAAA+AGG | + | chr3.2:1519716-1519735 | None:intergenic | 20.0% |
| !!! | TATGTTGGTTGTTTTTTAAA+AGG | - | chr3.2:1518721-1518740 | MS.gene53952:intron | 20.0% |
| !!! | TCTTTTTATATCTTCTATCT+GGG | - | chr3.2:1519339-1519358 | MS.gene53952:CDS | 20.0% |
| !!! | TTCTTTTTATATCTTCTATC+TGG | - | chr3.2:1519338-1519357 | MS.gene53952:CDS | 20.0% |
| ! | AATTAAATATACCGTAACAC+CGG | + | chr3.2:1518422-1518441 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTTCAATCTTA+GGG | - | chr3.2:1518767-1518786 | MS.gene53952:intron | 25.0% |
| ! | GTTTAATGATTGCTCAAAAA+AGG | - | chr3.2:1518989-1519008 | MS.gene53952:intron | 25.0% |
| ! | TAACTTAAACTATGTGTGTT+TGG | - | chr3.2:1518047-1518066 | MS.gene53952:intron | 25.0% |
| ! | TAATTCAAAAACTTCAGTTC+TGG | - | chr3.2:1519879-1519898 | MS.gene53952:intron | 25.0% |
| ! | TATAGTTGATTAAATGGAAC+AGG | + | chr3.2:1519526-1519545 | None:intergenic | 25.0% |
| ! | TGTAAGTTAACTTCAATCTT+AGG | - | chr3.2:1518766-1518785 | MS.gene53952:intron | 25.0% |
| ! | TTCGTAATGACATTGAAATT+TGG | - | chr3.2:1518891-1518910 | MS.gene53952:intron | 25.0% |
| !! | ACATCTTTTGATATGTTTCA+CGG | - | chr3.2:1520033-1520052 | MS.gene53952:intron | 25.0% |
| !! | ATTTTGTTGAATCACTTGAA+CGG | - | chr3.2:1520186-1520205 | MS.gene53952:intron | 25.0% |
| !! | TATCTTTTCTGATTTAGCAT+AGG | - | chr3.2:1519101-1519120 | MS.gene53952:CDS | 25.0% |
| !! | TGATGTTTTATGTGCATTAT+TGG | - | chr3.2:1519405-1519424 | MS.gene53952:intron | 25.0% |
| !! | TTAGTAGTTATGTTAGTTTC+CGG | - | chr3.2:1517943-1517962 | MS.gene53952:intron | 25.0% |
| !!! | ATTCTGCTTACTTTTAATTG+TGG | - | chr3.2:1520312-1520331 | MS.gene53952:intron | 25.0% |
| AAATTAAAGGAACATCCTTG+AGG | + | chr3.2:1519617-1519636 | None:intergenic | 30.0% | |
| AACTATGTGTGTTTGGTATT+AGG | - | chr3.2:1518054-1518073 | MS.gene53952:intron | 30.0% | |
| AAGAAATGTGCTTAAACTAG+GGG | + | chr3.2:1519236-1519255 | None:intergenic | 30.0% | |
| AAGAATAGCCGAAGATTTAA+TGG | + | chr3.2:1519454-1519473 | None:intergenic | 30.0% | |
| AAGCTTATTCCAAACTCAAA+AGG | - | chr3.2:1517739-1517758 | MS.gene53952:CDS | 30.0% | |
| AAGTAAGCAGAATAACTAAC+TGG | + | chr3.2:1520305-1520324 | None:intergenic | 30.0% | |
| AATTAAAGGAACATCCTTGA+GGG | + | chr3.2:1519616-1519635 | None:intergenic | 30.0% | |
| ACATAAATGTAGCATGTCTT+TGG | + | chr3.2:1519957-1519976 | None:intergenic | 30.0% | |
| ACTATGTGTGTTTGGTATTA+GGG | - | chr3.2:1518055-1518074 | MS.gene53952:intron | 30.0% | |
| AGAAGAAATGTGCTTAAACT+AGG | + | chr3.2:1519238-1519257 | None:intergenic | 30.0% | |
| ATTCACAGCATTATCATACT+CGG | + | chr3.2:1520579-1520598 | None:intergenic | 30.0% | |
| ATTTGACTAAACATTCCAAC+AGG | + | chr3.2:1519577-1519596 | None:intergenic | 30.0% | |
| CAATGTCATTACGAAACATT+TGG | + | chr3.2:1518886-1518905 | None:intergenic | 30.0% | |
| CATGTTTGTTCAATCTGTTA+AGG | - | chr3.2:1519637-1519656 | MS.gene53952:intron | 30.0% | |
| CATTCATACAGAATGATCAT+AGG | + | chr3.2:1519301-1519320 | None:intergenic | 30.0% | |
| CCTTAATCTTGGTATAAACA+AGG | + | chr3.2:1519754-1519773 | None:intergenic | 30.0% | |
| CTCTTTGACCATTAAATCTT+CGG | - | chr3.2:1519443-1519462 | MS.gene53952:intron | 30.0% | |
| GAAGAAATGTGCTTAAACTA+GGG | + | chr3.2:1519237-1519256 | None:intergenic | 30.0% | |
| TAGCTTCTGTAAAATCACAA+TGG | + | chr3.2:1518105-1518124 | None:intergenic | 30.0% | |
| TATATCAATGTTGTCAAACG+TGG | - | chr3.2:1518199-1518218 | MS.gene53952:intron | 30.0% | |
| TCAAAATTCCAAAAACATGC+TGG | + | chr3.2:1518495-1518514 | None:intergenic | 30.0% | |
| TCGGAAAAGAATTATGAACT+GGG | - | chr3.2:1519819-1519838 | MS.gene53952:intron | 30.0% | |
| TGTGTTAAGTCTAATCAATC+AGG | + | chr3.2:1520098-1520117 | None:intergenic | 30.0% | |
| TTCGGAAAAGAATTATGAAC+TGG | - | chr3.2:1519818-1519837 | MS.gene53952:intron | 30.0% | |
| ! | AGTTGAATTTTTGCGCAATT+TGG | + | chr3.2:1517789-1517808 | None:intergenic | 30.0% |
| ! | ATCTTTTGATCTGTAACCTA+TGG | - | chr3.2:1517864-1517883 | MS.gene53952:CDS | 30.0% |
| ! | ATGGAAGAAGATTTGGAATT+TGG | - | chr3.2:1517615-1517634 | MS.gene53952:CDS | 30.0% |
| ! | CATAATTCTTTTCCGAAAAC+AGG | + | chr3.2:1519815-1519834 | None:intergenic | 30.0% |
| ! | CCTTGTTTATACCAAGATTA+AGG | - | chr3.2:1519751-1519770 | MS.gene53952:intron | 30.0% |
| ! | TGGAAGAAGATTTGGAATTT+GGG | - | chr3.2:1517616-1517635 | MS.gene53952:CDS | 30.0% |
| ! | TTATCCGAGCAAAATTTTCA+AGG | + | chr3.2:1520268-1520287 | None:intergenic | 30.0% |
| ! | TTGACCTTGAAAATTTTGCT+CGG | - | chr3.2:1520261-1520280 | MS.gene53952:intron | 30.0% |
| !! | AAGCTAAAAAGTGTAGCTTT+TGG | - | chr3.2:1518119-1518138 | MS.gene53952:intron | 30.0% |
| AAAATCAGACAACTTCTCTG+TGG | - | chr3.2:1519905-1519924 | MS.gene53952:intron | 35.0% | |
| AAATTACCCTAATCCAACCA+AGG | + | chr3.2:1519851-1519870 | None:intergenic | 35.0% | |
| AATATATTGACCACCCTTTG+GGG | + | chr3.2:1520012-1520031 | None:intergenic | 35.0% | |
| AATTACCCTAATCCAACCAA+GGG | + | chr3.2:1519850-1519869 | None:intergenic | 35.0% | |
| ACATAGTAACTTGATCCTGT+TGG | - | chr3.2:1519559-1519578 | MS.gene53952:intron | 35.0% | |
| ACCTTAAGAAAAATCCCCAA+AGG | - | chr3.2:1519995-1520014 | MS.gene53952:intron | 35.0% | |
| ATAACAATCATCTTGCTCTC+TGG | + | chr3.2:1517914-1517933 | None:intergenic | 35.0% | |
| ATGACATTGAAATTTGGCAG+TGG | - | chr3.2:1518897-1518916 | MS.gene53952:intron | 35.0% | |
| CAATATATTGACCACCCTTT+GGG | + | chr3.2:1520013-1520032 | None:intergenic | 35.0% | |
| CCTTAAGAAAAATCCCCAAA+GGG | - | chr3.2:1519996-1520015 | MS.gene53952:intron | 35.0% | |
| CTGGCAAGATTTACATGTTT+GGG | + | chr3.2:1518476-1518495 | None:intergenic | 35.0% | |
| GCATTATTGGTATATCGAGT+GGG | - | chr3.2:1519418-1519437 | MS.gene53952:intron | 35.0% | |
| GCTACATTTAGATATTCACC+AGG | + | chr3.2:1519694-1519713 | None:intergenic | 35.0% | |
| TAAATGTAGCATGTCTTTGG+TGG | + | chr3.2:1519954-1519973 | None:intergenic | 35.0% | |
| TAACAATCATCTTGCTCTCT+GGG | + | chr3.2:1517913-1517932 | None:intergenic | 35.0% | |
| TAACAGAGTAAATCAGTCTG+TGG | + | chr3.2:1518622-1518641 | None:intergenic | 35.0% | |
| TAGTACCACATCTCAGAATT+AGG | + | chr3.2:1518518-1518537 | None:intergenic | 35.0% | |
| TCAATATATTGACCACCCTT+TGG | + | chr3.2:1520014-1520033 | None:intergenic | 35.0% | |
| TGATGCAGCAGTCAAAATAA+TGG | + | chr3.2:1518556-1518575 | None:intergenic | 35.0% | |
| TGCATTATTGGTATATCGAG+TGG | - | chr3.2:1519417-1519436 | MS.gene53952:intron | 35.0% | |
| TTCGATAAACGACAACACAA+TGG | - | chr3.2:1517647-1517666 | MS.gene53952:CDS | 35.0% | |
| TTGCTCGGATAACATGATAA+CGG | - | chr3.2:1520276-1520295 | MS.gene53952:intron | 35.0% | |
| ! | AAATCTTGCCAGCATGTTTT+TGG | - | chr3.2:1518484-1518503 | MS.gene53952:intron | 35.0% |
| ! | ACGAAGCAAAACAACGATTT+TGG | + | chr3.2:1517688-1517707 | None:intergenic | 35.0% |
| ! | AGATTTGGAATTTGGGAAGA+AGG | - | chr3.2:1517623-1517642 | MS.gene53952:CDS | 35.0% |
| ! | TACCTCAAATCACCTGTTTT+CGG | - | chr3.2:1519800-1519819 | MS.gene53952:intron | 35.0% |
| ! | TGAATTTTTGCGCAATTTGG+CGG | + | chr3.2:1517786-1517805 | None:intergenic | 35.0% |
| ! | TTTTCTGACTACATGACTTC+TGG | - | chr3.2:1518921-1518940 | MS.gene53952:intron | 35.0% |
| !! | AGCTTTTGGAAAATCACGAT+AGG | - | chr3.2:1518133-1518152 | MS.gene53952:intron | 35.0% |
| !! | CTTTTAATTGTGGACGTGAT+TGG | - | chr3.2:1520322-1520341 | MS.gene53952:intron | 35.0% |
| !! | TTTGACCTAATTCTGAGATG+TGG | - | chr3.2:1518510-1518529 | MS.gene53952:intron | 35.0% |
| !!! | ACTGAGTCATTTTTTGCCAT+AGG | + | chr3.2:1517883-1517902 | None:intergenic | 35.0% |
| !!! | AGTAACGAACCTTTTGAGTT+TGG | + | chr3.2:1517751-1517770 | None:intergenic | 35.0% |
| AACAATCATCTTGCTCTCTG+GGG | + | chr3.2:1517912-1517931 | None:intergenic | 40.0% | |
| AATTCATACGGCGTAGCAAT+AGG | - | chr3.2:1518824-1518843 | MS.gene53952:intron | 40.0% | |
| ACTGTATAAAAGTCCCGTGT+AGG | + | chr3.2:1518022-1518041 | None:intergenic | 40.0% | |
| ATGTGTGTTTGGTATTAGGG+TGG | - | chr3.2:1518058-1518077 | MS.gene53952:intron | 40.0% | |
| ATTCATACGGCGTAGCAATA+GGG | - | chr3.2:1518825-1518844 | MS.gene53952:intron | 40.0% | |
| ATTGAAGTTTCGTACCCTCA+AGG | - | chr3.2:1519599-1519618 | MS.gene53952:intron | 40.0% | |
| CACTTGAATTTAGGTGAGTG+CGG | + | chr3.2:1520367-1520386 | None:intergenic | 40.0% | |
| CCTTCAGCTGTTAAAGAAAG+CGG | - | chr3.2:1520430-1520449 | MS.gene53952:intron | 40.0% | |
| CGCTTTCTTTAACAGCTGAA+GGG | + | chr3.2:1520432-1520451 | None:intergenic | 40.0% | |
| CTCGTCGTGATACTAAACAT+AGG | - | chr3.2:1518175-1518194 | MS.gene53952:intron | 40.0% | |
| CTGTTAAGGCTCTCTTTGTT+TGG | - | chr3.2:1519651-1519670 | MS.gene53952:intron | 40.0% | |
| CTTCAGCTGTTAAAGAAAGC+GGG | - | chr3.2:1520431-1520450 | MS.gene53952:intron | 40.0% | |
| CTTCAGTGATCTCCTTAACA+TGG | + | chr3.2:1520526-1520545 | None:intergenic | 40.0% | |
| GAAACAACGACTCCATTTCA+CGG | + | chr3.2:1519128-1519147 | None:intergenic | 40.0% | |
| GAGGTAGCATGTCATAAAGA+AGG | + | chr3.2:1519786-1519805 | None:intergenic | 40.0% | |
| GCTGGCAAGATTTACATGTT+TGG | + | chr3.2:1518477-1518496 | None:intergenic | 40.0% | |
| GCTGTGAATGAAGCTATTAG+AGG | - | chr3.2:1520590-1520609 | MS.gene53952:CDS | 40.0% | |
| GGAAAAGCAGAAACTACATC+TGG | - | chr3.2:1519206-1519225 | MS.gene53952:intron | 40.0% | |
| GGACGAAAAAGCCTTAATCT+TGG | + | chr3.2:1519765-1519784 | None:intergenic | 40.0% | |
| GGATTTGTGCTAGATCAATG+CGG | + | chr3.2:1519167-1519186 | None:intergenic | 40.0% | |
| GTTGAATCACTTGAACGGAA+CGG | - | chr3.2:1520191-1520210 | MS.gene53952:intron | 40.0% | |
| TAACACCCTTGGTTGGATTA+GGG | - | chr3.2:1519842-1519861 | MS.gene53952:intron | 40.0% | |
| TAAGAAAAATCCCCAAAGGG+TGG | - | chr3.2:1519999-1520018 | MS.gene53952:intron | 40.0% | |
| TCTGTGGTCATCTGTTAACT+TGG | - | chr3.2:1519921-1519940 | MS.gene53952:intron | 40.0% | |
| TGTGTGTTTGGTATTAGGGT+GGG | - | chr3.2:1518059-1518078 | MS.gene53952:intron | 40.0% | |
| TTCCGAAAACAGGTGATTTG+AGG | + | chr3.2:1519805-1519824 | None:intergenic | 40.0% | |
| TTTAGCATAGGTCCGTGAAA+TGG | - | chr3.2:1519113-1519132 | MS.gene53952:CDS | 40.0% | |
| ! | AATATACCGTAACACCGGTT+AGG | + | chr3.2:1518417-1518436 | None:intergenic | 40.0% |
| ! | CATGTTTGGGCTTTTCAGTT+CGG | + | chr3.2:1518463-1518482 | None:intergenic | 40.0% |
| ! | TCTGAGATGTGGTACTATAG+CGG | - | chr3.2:1518521-1518540 | MS.gene53952:intron | 40.0% |
| !! | CCCTTTGGGGATTTTTCTTA+AGG | + | chr3.2:1519999-1520018 | None:intergenic | 40.0% |
| !! | CTTTGCTGTTCTTTCTCAAG+TGG | - | chr3.2:1520223-1520242 | MS.gene53952:intron | 40.0% |
| AAGGAGATCACTGAAGCTTC+TGG | - | chr3.2:1520530-1520549 | MS.gene53952:intron | 45.0% | |
| ACATTAAACGAGGAGGTCTC+GGG | + | chr3.2:1517976-1517995 | None:intergenic | 45.0% | |
| AGATCAATGCGGCTATAGTC+AGG | + | chr3.2:1519156-1519175 | None:intergenic | 45.0% | |
| AGCTGTTAAAGAAAGCGGGT+CGG | - | chr3.2:1520435-1520454 | MS.gene53952:intron | 45.0% | |
| AGGAGATCACTGAAGCTTCT+GGG | - | chr3.2:1520531-1520550 | MS.gene53952:intron | 45.0% | |
| ATCATGGCTTACCAGTCGTT+CGG | + | chr3.2:1520465-1520484 | None:intergenic | 45.0% | |
| CCGCTTTCTTTAACAGCTGA+AGG | + | chr3.2:1520433-1520452 | None:intergenic | 45.0% | |
| CCTGTTCTTGAACAGCTCTA+AGG | + | chr3.2:1519188-1519207 | None:intergenic | 45.0% | |
| CCTTAGAGCTGTTCAAGAAC+AGG | - | chr3.2:1519185-1519204 | MS.gene53952:intron | 45.0% | |
| CTAAGCGACATTAAACGAGG+AGG | + | chr3.2:1517983-1518002 | None:intergenic | 45.0% | |
| CTGACTACATGACTTCTGGA+GGG | - | chr3.2:1518925-1518944 | MS.gene53952:intron | 45.0% | |
| GACATTAAACGAGGAGGTCT+CGG | + | chr3.2:1517977-1517996 | None:intergenic | 45.0% | |
| GAGCTAAGCGACATTAAACG+AGG | + | chr3.2:1517986-1518005 | None:intergenic | 45.0% | |
| GATCAATGCGGCTATAGTCA+GGG | + | chr3.2:1519155-1519174 | None:intergenic | 45.0% | |
| GCATGAGTGTGTCCATGTTA+AGG | - | chr3.2:1520511-1520530 | MS.gene53952:intron | 45.0% | |
| GGCAGAACCATCTAGTATAG+CGG | + | chr3.2:1518580-1518599 | None:intergenic | 45.0% | |
| GTAACACCCTTGGTTGGATT+AGG | - | chr3.2:1519841-1519860 | MS.gene53952:intron | 45.0% | |
| TATGAACTGGGTAACACCCT+TGG | - | chr3.2:1519831-1519850 | MS.gene53952:intron | 45.0% | |
| TCTGACTACATGACTTCTGG+AGG | - | chr3.2:1518924-1518943 | MS.gene53952:intron | 45.0% | |
| TTGGCTTATCAGCAGCTTTG+CGG | - | chr3.2:1518951-1518970 | MS.gene53952:intron | 45.0% | |
| ! | TGACTACATGACTTCTGGAG+GGG | - | chr3.2:1518926-1518945 | MS.gene53952:intron | 45.0% |
| ! | TTTGTACTGAAAGCGTGTCG+CGG | - | chr3.2:1518248-1518267 | MS.gene53952:intron | 45.0% |
| !! | TGAAGCTATTAGAGGTGTCC+AGG | - | chr3.2:1520598-1520617 | MS.gene53952:CDS | 45.0% |
| !!! | GCTTTTCAGTTCGGTGTTTC+AGG | + | chr3.2:1518454-1518473 | None:intergenic | 45.0% |
| AAAGTCCCGTGTAGGTAGCT+CGG | + | chr3.2:1518014-1518033 | None:intergenic | 50.0% | |
| AACTGGGTAACACCCTTGGT+TGG | - | chr3.2:1519835-1519854 | MS.gene53952:intron | 50.0% | |
| ATCAGTCTGTGGCGTCTACA+TGG | + | chr3.2:1518611-1518630 | None:intergenic | 50.0% | |
| GCATCAGCCGCTATACTAGA+TGG | - | chr3.2:1518570-1518589 | MS.gene53952:intron | 50.0% | |
| GGGTGGGTATGTCAGAATCA+CGG | - | chr3.2:1518075-1518094 | MS.gene53952:intron | 50.0% | |
| TCAAGTGGTGTGCTTGCAGT+TGG | - | chr3.2:1520238-1520257 | MS.gene53952:intron | 50.0% | |
| TGATGACCATGACAGCATCC+TGG | + | chr3.2:1520619-1520638 | None:intergenic | 50.0% | |
| TGGACACACTCATGCTCTGT+TGG | + | chr3.2:1520506-1520525 | None:intergenic | 50.0% | |
| TGGGACTGAAGAAGCAGAAG+CGG | - | chr3.2:1520550-1520569 | MS.gene53952:CDS | 50.0% | |
| TTCACGGATTTCTCGTACGC+TGG | - | chr3.2:1520049-1520068 | MS.gene53952:intron | 50.0% | |
| ! | AGCATGTCTTTGGTGGTCAC+TGG | + | chr3.2:1519947-1519966 | None:intergenic | 50.0% |
| ! | CATGACTTCTGGAGGGGAAT+TGG | - | chr3.2:1518932-1518951 | MS.gene53952:intron | 50.0% |
| ! | GAGAAGCCTAACCGGTGTTA+CGG | - | chr3.2:1518408-1518427 | MS.gene53952:intron | 50.0% |
| ACCAACCGAGCTACCTACAC+GGG | - | chr3.2:1518006-1518025 | MS.gene53952:intron | 55.0% | |
| AGGTGTCCAGGATGCTGTCA+TGG | - | chr3.2:1520610-1520629 | MS.gene53952:CDS | 55.0% | |
| CACCAACCGAGCTACCTACA+CGG | - | chr3.2:1518005-1518024 | MS.gene53952:intron | 55.0% | |
| CGGCGTAGCAATAGGGCTAT+TGG | - | chr3.2:1518832-1518851 | MS.gene53952:intron | 55.0% | |
| GACAGCGAGAGAAGCCTAAC+CGG | - | chr3.2:1518400-1518419 | MS.gene53952:intron | 55.0% | |
| GCTTATCAGCAGCTTTGCGG+TGG | - | chr3.2:1518954-1518973 | MS.gene53952:intron | 55.0% | |
| GGAGGTCTCGGGTTTATCTC+CGG | + | chr3.2:1517965-1517984 | None:intergenic | 55.0% | |
| GGCGTCTACATGGCACACAA+TGG | + | chr3.2:1518601-1518620 | None:intergenic | 55.0% | |
| TGGCTTACCAGTCGTTCGGA+TGG | + | chr3.2:1520461-1520480 | None:intergenic | 55.0% | |
| TCCCGTGTAGGTAGCTCGGT+TGG | + | chr3.2:1518010-1518029 | None:intergenic | 60.0% | |
| GGGTCGGCCATCCGAACGAC+TGG | - | chr3.2:1520451-1520470 | MS.gene53952:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 1517615 | 1520691 | 1517615 | ID=MS.gene53952 |
| chr3.2 | mRNA | 1517615 | 1520691 | 1517615 | ID=MS.gene53952.t1;Parent=MS.gene53952 |
| chr3.2 | exon | 1520546 | 1520691 | 1520546 | ID=MS.gene53952.t1.exon1;Parent=MS.gene53952.t1 |
| chr3.2 | CDS | 1520546 | 1520691 | 1520546 | ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1 |
| chr3.2 | exon | 1519296 | 1519389 | 1519296 | ID=MS.gene53952.t1.exon2;Parent=MS.gene53952.t1 |
| chr3.2 | CDS | 1519296 | 1519389 | 1519296 | ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1 |
| chr3.2 | exon | 1519079 | 1519183 | 1519079 | ID=MS.gene53952.t1.exon3;Parent=MS.gene53952.t1 |
| chr3.2 | CDS | 1519079 | 1519183 | 1519079 | ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1 |
| chr3.2 | exon | 1517615 | 1517884 | 1517615 | ID=MS.gene53952.t1.exon4;Parent=MS.gene53952.t1 |
| chr3.2 | CDS | 1517615 | 1517884 | 1517615 | ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1 |
| Gene Sequence |
| Protein sequence |
