AlfalfaGEDB | MS.gene53952

M. sativa cultivar XinJiangDaYe / MS.gene53952

KEGG: -
GO: -
PFAM: PF14966.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53952.t1	XP_013458796.1	96.6	204	7	0	1	204	1	204	3.00E-101	377.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53952.t1	A0A072UUU4	96.6	204	7	0	1	204	1	204	2.2e-101	377.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050438	MS.gene53952	0.80255	5.32E-49	-1.69E-46
MS.gene050719	MS.gene53952	0.849249	3.65E-60	-1.69E-46
MS.gene050721	MS.gene53952	0.847965	8.28E-60	-1.69E-46
MS.gene050724	MS.gene53952	0.852501	4.43E-61	-1.69E-46
MS.gene050815	MS.gene53952	0.801651	8.14E-49	-1.69E-46
MS.gene052176	MS.gene53952	0.814078	1.85E-51	-1.69E-46
MS.gene052286	MS.gene53952	0.802828	4.66E-49	-1.69E-46
MS.gene053216	MS.gene53952	0.816541	5.24E-52	-1.69E-46
MS.gene05795	MS.gene53952	0.803362	3.62E-49	-1.69E-46
MS.gene058906	MS.gene53952	0.815801	7.68E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53952.t1	MTR_3g006790	96.569	204	7	0	1	204	1	204	1.00e-146	406

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53952.t1	AT5G04910	69.231	182	56	0	23	204	41	222	2.02e-83	247

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Find 41 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTTATTCCAAACTCAAA+AGG	0.441845	3.2:-1520545	MS.gene53952:intron
AAGGAGATCACTGAAGCTTC+TGG	0.308239	3.2:-1517754	MS.gene53952:CDS
ACGAAGCAAAACAACGATTT+TGG	0.221401	3.2:+1520599	None:intergenic
AGATCAATGCGGCTATAGTC+AGG	0.401278	3.2:+1519131	None:intergenic
AGATTTGGAATTTGGGAAGA+AGG	0.436083	3.2:-1520661	MS.gene53952:CDS
AGCTGTTAAAGAAAGCGGGT+CGG	0.673250	3.2:-1517849	MS.gene53952:CDS
AGGAGATCACTGAAGCTTCT+GGG	0.504065	3.2:-1517753	MS.gene53952:CDS
AGGTGTCCAGGATGCTGTCA+TGG	0.560024	3.2:-1517674	MS.gene53952:CDS
ATCATGGCTTACCAGTCGTT+CGG	0.468178	3.2:+1517822	None:intergenic
ATGGAAGAAGATTTGGAATT+TGG	0.083112	3.2:-1520669	MS.gene53952:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAAAGGAACATCCTTG+AGG	+	chr3.2:1519617-1519636	None:intergenic	30.0%
AACTATGTGTGTTTGGTATT+AGG	-	chr3.2:1518054-1518073	MS.gene53952:intron	30.0%
AAGAAATGTGCTTAAACTAG+GGG	+	chr3.2:1519236-1519255	None:intergenic	30.0%
AAGAATAGCCGAAGATTTAA+TGG	+	chr3.2:1519454-1519473	None:intergenic	30.0%
AAGCTTATTCCAAACTCAAA+AGG	-	chr3.2:1517739-1517758	MS.gene53952:CDS	30.0%
AAGTAAGCAGAATAACTAAC+TGG	+	chr3.2:1520305-1520324	None:intergenic	30.0%
AATTAAAGGAACATCCTTGA+GGG	+	chr3.2:1519616-1519635	None:intergenic	30.0%
ACATAAATGTAGCATGTCTT+TGG	+	chr3.2:1519957-1519976	None:intergenic	30.0%
ACTATGTGTGTTTGGTATTA+GGG	-	chr3.2:1518055-1518074	MS.gene53952:intron	30.0%
AGAAGAAATGTGCTTAAACT+AGG	+	chr3.2:1519238-1519257	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	1517615	1520691	1517615	ID=MS.gene53952
chr3.2	mRNA	1517615	1520691	1517615	ID=MS.gene53952.t1;Parent=MS.gene53952
chr3.2	exon	1520546	1520691	1520546	ID=MS.gene53952.t1.exon1;Parent=MS.gene53952.t1
chr3.2	CDS	1520546	1520691	1520546	ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1
chr3.2	exon	1519296	1519389	1519296	ID=MS.gene53952.t1.exon2;Parent=MS.gene53952.t1
chr3.2	CDS	1519296	1519389	1519296	ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1
chr3.2	exon	1519079	1519183	1519079	ID=MS.gene53952.t1.exon3;Parent=MS.gene53952.t1
chr3.2	CDS	1519079	1519183	1519079	ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1
chr3.2	exon	1517615	1517884	1517615	ID=MS.gene53952.t1.exon4;Parent=MS.gene53952.t1
chr3.2	CDS	1517615	1517884	1517615	ID=cds.MS.gene53952.t1;Parent=MS.gene53952.t1

Gene Sequence

>MS.gene53952

ATGGAAGAAGATTTGGAATTTGGGAAGAAGGTTTCGATAAACGACAACACAATGGAAGTAGTTGATTCAACCAAAATCGTTGTTTTGCTTCGTAGTTTTCTCGATATTCAACAACGCAGAGCTCAAGCTTATTCCAAACTCAAAAGGTTCGTTACTTCGTTTTTGATTCCGCCAAATTGCGCAAAAATTCAACTTAATTTCTACTTTTTTCATCTTATTTTTACTTTATATTATATCTATTTTATAAGTATCTTTTGATCTGTAACCTATGGCAAAAAATGACTCAGTTATCAACCCCAGAGAGCAAGATGATTGTTATTTTGTAATGTTAGTAGTTATGTTAGTTTCCGGAGATAAACCCGAGACCTCCTCGTTTAATGTCGCTTAGCTCACCAACCGAGCTACCTACACGGGACTTTTATACAGTCAATCTAACTTAAACTATGTGTGTTTGGTATTAGGGTGGGTATGTCAGAATCACGGCGATCCATTGTGATTTTACAGAAGCTAAAAAGTGTAGCTTTTGGAAAATCACGATAGGTCGTTGTGATTCTGACATACTCGTCGTGATACTAAACATAGGCTATATCAATGTTGTCAAACGTGGAGTTGTTATTTGACAACACTGTGTAGTTTGTACTGAAAGCGTGTCGCGGAACAATAATAATTTGTTCAAATTCTGCTATGCAATAGTGACTATTCGAAAACATTGTATAGTAGATTCGTAATGCATAAAAACTCAGCAACTGCATATGACTATTTCTGAAAAATTATAGCAAGAATGAGACAGCGAGAGAAGCCTAACCGGTGTTACGGTATATTTAATTTGCGACATTCCTGAAACACCGAACTGAAAAGCCCAAACATGTAAATCTTGCCAGCATGTTTTTGGAATTTTGACCTAATTCTGAGATGTGGTACTATAGCGGTTGCAGAAGCCATTATTTTGACTGCTGCATCAGCCGCTATACTAGATGGTTCTGCCATTGTGTGCCATGTAGACGCCACAGACTGATTTACTCTGTTACACTGTTATAGCACACTATTGACAGCACTTTTTATATTATGTAATTAAAGTCTAAAATATATAATTAAATTTCTAGATTTATGTTGGTTGTTTTTTAAAAGGTTTTGTAAATTTATATTTTACTTGTAAGTTAACTTCAATCTTAGGGCGTAATGCTAGTGCGCATGTTTTTGTATTATGAAAATTCATACGGCGTAGCAATAGGGCTATTGGATCTCTGATAGTGTGTCAACGTTACTTGCCAAATGTTTCGTAATGACATTGAAATTTGGCAGTGGATTTTCTGACTACATGACTTCTGGAGGGGAATTGGCTTATCAGCAGCTTTGCGGTGGAATCACATCAGAGTTTAATGATTGCTCAAAAAAGGTTTGACACATAATCCTAACATTATTGTTTTCTTTTAATATAAAAAGATTTTGTTTAATCTTACTGCATTCTTTAACAATGTTTTTTTTTTATCTTTTCTGATTTAGCATAGGTCCGTGAAATGGAGTCGTTGTTTCAGAGCCCTGACTATAGCCGCATTGATCTAGCACAAATCCTTAGAGCTGTTCAAGAACAGGAAAAGCAGAAACTACATCTGGTAAGCCCCTAGTTTAAGCACATTTCTTCTACTAAATACAAACTTCATTTGTTTGCAATGATGCATAAAACCTATGATCATTCTGTATGAATGTTCTTTTTTGTACTGTTTTCTTTTTATATCTTCTATCTGGGTAATGTTAAAGTTCAAACTTAAACATGCTACAATTTATGTTTATGATGTTTTATGTGCATTATTGGTATATCGAGTGGGAACTCTTTGACCATTAAATCTTCGGCTATTCTTCTATTGTTAAATTATTGAAGTGTTTTGTTAAAGTTGTAAGCACAGAAAACCTGTTCCATTTAATCAACTATAATTAGTATTAGTGACATAGTAACTTGATCCTGTTGGAATGTTTAGTCAAATGTATTGAAGTTTCGTACCCTCAAGGATGTTCCTTTAATTTCATGTTTGTTCAATCTGTTAAGGCTCTCTTTGTTTGGTTAAAATATTAGTTAAACCTGGTGAATATCTAAATGTAGCCTTTTTTAAGTTAAATCAGCTTTTTACGAAAGTTCATCCTTGTTTATACCAAGATTAAGGCTTTTTCGTCCTTCTTTATGACATGCTACCTCAAATCACCTGTTTTCGGAAAAGAATTATGAACTGGGTAACACCCTTGGTTGGATTAGGGTAATTTCTCTTACTTAATTCAAAAACTTCAGTTCTGGTGCAAAATCAGACAACTTCTCTGTGGTCATCTGTTAACTTGGCCAGTGACCACCAAAGACATGCTACATTTATGTTTAAACCCTAATAGTATTACCTTAAGAAAAATCCCCAAAGGGTGGTCAATATATTGACATCTTTTGATATGTTTCACGGATTTCTCGTACGCTGGTTACATTTAATAAGCATTATATGCCTGATTGATTAGACTTAACACATTAAAAAACAGTTATATTTACTAAAAAAACAGTAATGATTTGAGGGTTATATTTACTTAACAGTAATGATTTTGTTGAATCACTTGAACGGAACGGTTATATTTACTTTGCTGTTCTTTCTCAAGTGGTGTGCTTGCAGTTGGTTGACCTTGAAAATTTTGCTCGGATAACATGATAACGGATACCAGTTAGTTATTCTGCTTACTTTTAATTGTGGACGTGATTGGAACTCTTGTTGCTTTTAATCCGCACTCACCTAAATTCAAGTGTTTTGTATTTTGCTGATAATTGCTTCACTTTAAAGACAGCTACCCTTCAGCTGTTAAAGAAAGCGGGTCGGCCATCCGAACGACTGGTAAGCCATGATAATTGCAAATTTACAAAGCCAACAGAGCATGAGTGTGTCCATGTTAAGGAGATCACTGAAGCTTCTGGGACTGAAGAAGCAGAAGCGGATGCCGAGTATGATAATGCTGTGAATGAAGCTATTAGAGGTGTCCAGGATGCTGTCATGGTCATCAATGAACATCTAGAAGAAGTCAGATATGAGATTGAAGCACTTGAAGCAGAGTAA

Protein sequence

>MS.gene53952.t1

MEEDLEFGKKVSINDNTMEVVDSTKIVVLLRSFLDIQQRRAQAYSKLKSGFSDYMTSGGELAYQQLCGGITSEFNDCSKKVREMESLFQSPDYSRIDLAQILRAVQEQEKQKLHLTATLQLLKKAGRPSERLVSHDNCKFTKPTEHECVHVKEITEASGTEEAEADAEYDNAVNEAIRGVQDAVMVINEHLEEVRYEIEALEAE