Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54596.t1 | XP_013456242.1 | 97.1 | 906 | 26 | 0 | 1 | 906 | 1 | 906 | 0.00E+00 | 1817 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54596.t1 | O24370 | 62.8 | 858 | 304 | 7 | 52 | 906 | 54 | 899 | 0.0e+00 | 1124.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54596.t1 | A0A072UMH4 | 97.1 | 906 | 26 | 0 | 1 | 906 | 1 | 906 | 0.0e+00 | 1817.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050502 | MS.gene54596 | 0.846232 | 2.47E-59 | -1.69E-46 |
MS.gene052346 | MS.gene54596 | 0.874332 | 7.34E-68 | -1.69E-46 |
MS.gene053169 | MS.gene54596 | 0.80456 | 2.04E-49 | -1.69E-46 |
MS.gene053318 | MS.gene54596 | 0.814495 | 1.50E-51 | -1.69E-46 |
MS.gene053436 | MS.gene54596 | 0.819257 | 1.28E-52 | -1.69E-46 |
MS.gene055369 | MS.gene54596 | 0.808274 | 3.36E-50 | -1.69E-46 |
MS.gene055909 | MS.gene54596 | 0.835792 | 1.36E-56 | -1.69E-46 |
MS.gene055911 | MS.gene54596 | 0.842578 | 2.37E-58 | -1.69E-46 |
MS.gene056346 | MS.gene54596 | 0.996791 | 2.82E-232 | -1.69E-46 |
MS.gene056514 | MS.gene54596 | 0.82462 | 7.31E-54 | -1.69E-46 |
MS.gene059303 | MS.gene54596 | 0.816631 | 5.01E-52 | -1.69E-46 |
MS.gene059517 | MS.gene54596 | 0.827503 | 1.51E-54 | -1.69E-46 |
MS.gene060372 | MS.gene54596 | 0.801337 | 9.44E-49 | -1.69E-46 |
MS.gene060485 | MS.gene54596 | 0.814599 | 1.42E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54596.t1 | MTR_4g066170 | 97.130 | 906 | 26 | 0 | 1 | 906 | 1 | 906 | 0.0 | 1835 |
MS.gene54596.t1 | MTR_3g479460 | 60.844 | 853 | 318 | 7 | 59 | 906 | 62 | 903 | 0.0 | 1114 |
MS.gene54596.t1 | MTR_3g079450 | 59.096 | 885 | 346 | 8 | 27 | 906 | 29 | 902 | 0.0 | 1092 |
MS.gene54596.t1 | MTR_3g079420 | 62.352 | 842 | 308 | 8 | 70 | 906 | 28 | 865 | 0.0 | 1063 |
MS.gene54596.t1 | MTR_8g020970 | 48.636 | 843 | 416 | 11 | 74 | 905 | 90 | 926 | 0.0 | 824 |
MS.gene54596.t1 | MTR_8g080230 | 47.580 | 847 | 425 | 11 | 72 | 906 | 77 | 916 | 0.0 | 820 |
MS.gene54596.t1 | MTR_3g079450 | 55.696 | 632 | 265 | 7 | 27 | 653 | 29 | 650 | 0.0 | 719 |
MS.gene54596.t1 | MTR_1g104650 | 44.245 | 834 | 432 | 17 | 98 | 906 | 31 | 856 | 0.0 | 691 |
MS.gene54596.t1 | MTR_8g018420 | 44.282 | 822 | 435 | 15 | 98 | 906 | 45 | 856 | 0.0 | 677 |
MS.gene54596.t1 | MTR_8g018690 | 44.135 | 827 | 424 | 15 | 98 | 906 | 59 | 865 | 0.0 | 674 |
MS.gene54596.t1 | MTR_8g020990 | 44.214 | 821 | 437 | 13 | 98 | 906 | 57 | 868 | 0.0 | 673 |
MS.gene54596.t1 | MTR_2g099560 | 42.580 | 876 | 460 | 18 | 52 | 906 | 10 | 863 | 0.0 | 667 |
MS.gene54596.t1 | MTR_8g018510 | 43.349 | 842 | 437 | 16 | 84 | 906 | 49 | 869 | 0.0 | 666 |
MS.gene54596.t1 | MTR_2g099570 | 41.705 | 868 | 477 | 15 | 52 | 906 | 10 | 861 | 0.0 | 665 |
MS.gene54596.t1 | MTR_8g018730 | 43.489 | 837 | 442 | 15 | 85 | 906 | 44 | 864 | 0.0 | 664 |
MS.gene54596.t1 | MTR_5g024020 | 42.063 | 882 | 470 | 19 | 48 | 906 | 4 | 867 | 0.0 | 661 |
MS.gene54596.t1 | MTR_8g018570 | 42.630 | 882 | 468 | 19 | 46 | 906 | 6 | 870 | 0.0 | 660 |
MS.gene54596.t1 | MTR_1g083020 | 44.178 | 833 | 426 | 15 | 98 | 906 | 41 | 858 | 0.0 | 659 |
MS.gene54596.t1 | MTR_8g018735 | 43.256 | 823 | 438 | 14 | 99 | 906 | 57 | 865 | 0.0 | 655 |
MS.gene54596.t1 | MTR_8g018520 | 42.389 | 854 | 455 | 16 | 74 | 906 | 31 | 868 | 0.0 | 651 |
MS.gene54596.t1 | MTR_4g088810 | 43.086 | 810 | 418 | 14 | 109 | 905 | 115 | 894 | 0.0 | 648 |
MS.gene54596.t1 | MTR_8g018430 | 42.271 | 828 | 443 | 15 | 98 | 906 | 50 | 861 | 0.0 | 648 |
MS.gene54596.t1 | MTR_8g018550 | 42.694 | 876 | 470 | 18 | 48 | 906 | 8 | 868 | 0.0 | 646 |
MS.gene54596.t1 | MTR_8g018730 | 42.926 | 834 | 421 | 15 | 85 | 906 | 44 | 834 | 0.0 | 644 |
MS.gene54596.t1 | MTR_7g113410 | 42.099 | 829 | 453 | 16 | 98 | 906 | 46 | 867 | 0.0 | 637 |
MS.gene54596.t1 | MTR_8g018690 | 42.563 | 827 | 417 | 16 | 98 | 906 | 59 | 845 | 0.0 | 636 |
MS.gene54596.t1 | MTR_8g018450 | 42.663 | 811 | 421 | 15 | 102 | 906 | 56 | 828 | 0.0 | 632 |
MS.gene54596.t1 | MTR_5g024020 | 40.363 | 882 | 449 | 19 | 48 | 906 | 4 | 831 | 0.0 | 623 |
MS.gene54596.t1 | MTR_3g081130 | 39.796 | 882 | 481 | 23 | 48 | 906 | 4 | 858 | 0.0 | 605 |
MS.gene54596.t1 | MTR_3g081130 | 42.487 | 772 | 420 | 16 | 145 | 906 | 29 | 786 | 0.0 | 597 |
MS.gene54596.t1 | MTR_8g018590 | 41.585 | 820 | 429 | 16 | 106 | 906 | 35 | 823 | 0.0 | 592 |
MS.gene54596.t1 | MTR_8g018650 | 43.158 | 760 | 377 | 13 | 152 | 906 | 98 | 807 | 0.0 | 581 |
MS.gene54596.t1 | MTR_8g018620 | 42.500 | 760 | 382 | 13 | 152 | 906 | 98 | 807 | 0.0 | 576 |
MS.gene54596.t1 | MTR_8g020970 | 47.458 | 590 | 297 | 8 | 74 | 653 | 90 | 676 | 0.0 | 556 |
MS.gene54596.t1 | MTR_8g011340 | 37.437 | 796 | 452 | 18 | 106 | 872 | 55 | 833 | 1.34e-169 | 514 |
MS.gene54596.t1 | MTR_8g018730 | 45.424 | 590 | 308 | 8 | 322 | 906 | 4 | 584 | 2.74e-169 | 505 |
MS.gene54596.t1 | MTR_8g018735 | 42.105 | 570 | 304 | 12 | 99 | 653 | 57 | 615 | 6.24e-136 | 421 |
MS.gene54596.t1 | MTR_6g452500 | 35.981 | 617 | 364 | 14 | 285 | 889 | 8 | 605 | 2.39e-122 | 384 |
MS.gene54596.t1 | MTR_8g021020 | 45.476 | 420 | 222 | 5 | 490 | 906 | 16 | 431 | 1.95e-116 | 362 |
MS.gene54596.t1 | MTR_7g012030 | 68.908 | 119 | 37 | 0 | 555 | 673 | 85 | 203 | 8.67e-54 | 186 |
MS.gene54596.t1 | MTR_8g463810 | 44.000 | 225 | 62 | 3 | 465 | 689 | 197 | 357 | 5.93e-50 | 182 |
MS.gene54596.t1 | MTR_6g046330 | 62.308 | 130 | 38 | 1 | 555 | 673 | 75 | 204 | 2.91e-48 | 174 |
MS.gene54596.t1 | MTR_4g088805 | 47.253 | 91 | 47 | 1 | 816 | 905 | 1 | 91 | 4.90e-18 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54596.t1 | AT3G45140 | 56.905 | 840 | 344 | 8 | 71 | 906 | 71 | 896 | 0.0 | 1003 |
MS.gene54596.t1 | AT3G45140 | 59.605 | 760 | 297 | 6 | 151 | 906 | 1 | 754 | 0.0 | 961 |
MS.gene54596.t1 | AT1G72520 | 48.815 | 844 | 413 | 12 | 74 | 906 | 91 | 926 | 0.0 | 833 |
MS.gene54596.t1 | AT1G17420 | 48.951 | 858 | 412 | 12 | 63 | 906 | 74 | 919 | 0.0 | 826 |
MS.gene54596.t1 | AT1G67560 | 46.416 | 851 | 428 | 14 | 72 | 906 | 79 | 917 | 0.0 | 784 |
MS.gene54596.t1 | AT1G55020 | 45.301 | 830 | 420 | 16 | 98 | 906 | 43 | 859 | 0.0 | 679 |
MS.gene54596.t1 | AT3G22400 | 43.578 | 872 | 448 | 18 | 70 | 906 | 24 | 886 | 0.0 | 677 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACTTGACCCTAAAATTTA+TGG | 0.171306 | 4.3:+37893090 | MS.gene54596:CDS |
CAAATGATGGTCTTATTCTT+TGG | 0.204203 | 4.3:+37906182 | MS.gene54596:CDS |
ACAACCTCCTTTGTTTCTTT+TGG | 0.222665 | 4.3:-37884335 | None:intergenic |
CATCATGCTGCGGTGAATTT+TGG | 0.226534 | 4.3:+37906418 | MS.gene54596:CDS |
GGATAATGATGAAACCTTAT+TGG | 0.262122 | 4.3:-37887687 | None:intergenic |
ATAAAGCAAATTGTTCTTGA+TGG | 0.271031 | 4.3:+37887578 | MS.gene54596:CDS |
CTGCTAGTCCTCTATGGATT+AGG | 0.276392 | 4.3:-37906102 | None:intergenic |
CTTGAAGGCACAACATTATA+TGG | 0.278755 | 4.3:+37905494 | MS.gene54596:CDS |
CGTGCAATGGCCGGTCTATT+AGG | 0.281859 | 4.3:-37906466 | None:intergenic |
TTTGAAGTACCAGGAAGTTT+TGG | 0.287906 | 4.3:+37887506 | MS.gene54596:CDS |
ACTAAGAGAGAGAGTTGTTT+AGG | 0.294778 | 4.3:-37906022 | None:intergenic |
TTTAGGCCATGTGGGGCATT+TGG | 0.297732 | 4.3:-37906133 | None:intergenic |
TGGTTTAGGGATGAAGAATT+TGG | 0.299482 | 4.3:+37890891 | MS.gene54596:CDS |
GTAAAGACTTGCCTCCATTC+TGG | 0.301347 | 4.3:-37905602 | None:intergenic |
AGAAACAAAGGAGGTTGTTT+AGG | 0.305076 | 4.3:+37884340 | MS.gene54596:CDS |
CATTCTGGCTTTCCGCCAAT+TGG | 0.310117 | 4.3:-37905587 | None:intergenic |
CTTGGCACTCAACTGGTGTT+TGG | 0.311025 | 4.3:+37905630 | MS.gene54596:CDS |
CTTAACCTTATCAATCCTTC+TGG | 0.318156 | 4.3:-37889990 | None:intergenic |
GTTCTACAACGCCTAGGATA+TGG | 0.322916 | 4.3:-37890161 | None:intergenic |
AAATGATGGTCTTATTCTTT+GGG | 0.323159 | 4.3:+37906183 | MS.gene54596:CDS |
ACTCAACTGGTGTTTGGCTT+TGG | 0.325509 | 4.3:+37905636 | MS.gene54596:CDS |
CACTTCAACAATGTCACTTC+CGG | 0.328499 | 4.3:-37906547 | None:intergenic |
ACATCAGAGCCTGGTGTAAC+AGG | 0.346010 | 4.3:+37906823 | MS.gene54596:CDS |
CAACTGGTGTTTGGCTTTGG+AGG | 0.346039 | 4.3:+37905639 | MS.gene54596:CDS |
TTTGGGATACTATCAAATCT+TGG | 0.346372 | 4.3:+37906200 | MS.gene54596:CDS |
GAACTTAAACGACCTGTTCT+TGG | 0.346682 | 4.3:+37890125 | MS.gene54596:CDS |
TTCATTGAAAAGGTCATCTA+TGG | 0.347003 | 4.3:-37890494 | None:intergenic |
TCAAAAGCAGCTTTAATCAT+TGG | 0.348931 | 4.3:-37906685 | None:intergenic |
TTGTTCAAGATGAGACAATT+TGG | 0.358818 | 4.3:-37884240 | None:intergenic |
CCTCTATGGATTAGGTCATT+TGG | 0.362847 | 4.3:-37906094 | None:intergenic |
TTAAGTTCGGGATCGCTGTC+TGG | 0.374623 | 4.3:-37890110 | None:intergenic |
AAATAGTGACGACCATTGTT+TGG | 0.375344 | 4.3:+37906383 | MS.gene54596:CDS |
CTGTTTGTTGCTATAATGTA+AGG | 0.375603 | 4.3:-37905872 | None:intergenic |
ATCCAACATGAAAACATGTT+TGG | 0.381038 | 4.3:-37884290 | None:intergenic |
TTGTGGAAAATGAGCATAGA+AGG | 0.384517 | 4.3:+37887546 | MS.gene54596:CDS |
ACCATTGTTTGGATTACATC+GGG | 0.389981 | 4.3:+37906394 | MS.gene54596:CDS |
TGGCAGAGGACAGATTCTTT+TGG | 0.392055 | 4.3:+37890871 | MS.gene54596:intron |
TGATGACATAACAGATTTGT+TGG | 0.393027 | 4.3:+37884506 | MS.gene54596:CDS |
TATCCTAGGCGTTGTAGAAC+TGG | 0.394768 | 4.3:+37890164 | MS.gene54596:CDS |
GGAATGCTAATATGAAGTTC+AGG | 0.395431 | 4.3:+37906755 | MS.gene54596:CDS |
TCTCAAATAGAGACACTATA+TGG | 0.403294 | 4.3:-37906856 | None:intergenic |
AAGAACAGGTCGTTTAAGTT+CGG | 0.403315 | 4.3:-37890123 | None:intergenic |
CCAATATCTCCAAAACTTCC+TGG | 0.404847 | 4.3:-37887515 | None:intergenic |
TTGGGATACTATCAAATCTT+GGG | 0.406679 | 4.3:+37906201 | MS.gene54596:CDS |
ACACCTACTTGGCACTCAAC+TGG | 0.407754 | 4.3:+37905623 | MS.gene54596:CDS |
GTTCTTGATGGCTTTCTCAC+TGG | 0.412239 | 4.3:+37887590 | MS.gene54596:CDS |
ATCATCAGGGTTGTCATGCT+TGG | 0.413714 | 4.3:-37887648 | None:intergenic |
CTGTGTTGCCAAGGTTGGTC+AGG | 0.418531 | 4.3:+37890560 | MS.gene54596:CDS |
GTTGGGTAAATCAATTCTCT+TGG | 0.421329 | 4.3:+37884524 | MS.gene54596:CDS |
AAAGTTTAAAGGGAGGTTGA+TGG | 0.425696 | 4.3:+37906708 | MS.gene54596:CDS |
GGAAGACCTCGTTGCGATAC+AGG | 0.429976 | 4.3:+37890185 | MS.gene54596:CDS |
ATAAGACCATCATTTGCATA+AGG | 0.432398 | 4.3:-37906175 | None:intergenic |
AAAATGACCCTCTTATCATC+AGG | 0.437774 | 4.3:-37887662 | None:intergenic |
TAATCCTTGTTGCATCCAAT+TGG | 0.438384 | 4.3:+37890935 | MS.gene54596:CDS |
GATGACATAACAGATTTGTT+GGG | 0.448090 | 4.3:+37884507 | MS.gene54596:CDS |
AAGCCATGTCTCCATGGTAT+TGG | 0.449477 | 4.3:+37884261 | MS.gene54596:CDS |
TGTTCTTTGCCACCAAGAAC+AGG | 0.450316 | 4.3:-37890137 | None:intergenic |
GAGTTAGCTCGGCCGCCAAT+TGG | 0.451009 | 4.3:+37905572 | MS.gene54596:CDS |
GGCAAGTCTTTACACCTACT+TGG | 0.451346 | 4.3:+37905612 | MS.gene54596:CDS |
AGAACAGGTCGTTTAAGTTC+GGG | 0.451858 | 4.3:-37890122 | None:intergenic |
GCTGTAGTGGACAAGAATCT+TGG | 0.452160 | 4.3:+37890454 | MS.gene54596:CDS |
ACCAGTGACTAACAAGTTGA+TGG | 0.456313 | 4.3:-37905700 | None:intergenic |
CATGTCCTTGCTCATGACTC+TGG | 0.457266 | 4.3:+37905674 | MS.gene54596:CDS |
GTTGGCTTCAAAAGCTCATA+AGG | 0.458492 | 4.3:-37906802 | None:intergenic |
AGTTAAATCCTTCATTGAAA+AGG | 0.459003 | 4.3:-37890504 | None:intergenic |
TTCAGCAAATACCTTACAAT+CGG | 0.459678 | 4.3:+37890399 | MS.gene54596:CDS |
AGTAGTATACCGTGACCAAT+TGG | 0.462083 | 4.3:-37890950 | None:intergenic |
GTGGTTATTGCTGATTCAGC+AGG | 0.464570 | 4.3:-37893114 | None:intergenic |
GTCAAGTCATTCGCCGGATG+AGG | 0.467476 | 4.3:+37906621 | MS.gene54596:CDS |
TCTGGCTTTCCGCCAATTGG+CGG | 0.468670 | 4.3:-37905584 | None:intergenic |
TCGCCGGATGAGGAATATCT+TGG | 0.470343 | 4.3:+37906631 | MS.gene54596:CDS |
ATGAAGTTCAGGAATAGAAA+TGG | 0.474519 | 4.3:+37906766 | MS.gene54596:CDS |
ATGAGCAAGGACATGAGCTT+TGG | 0.474874 | 4.3:-37905666 | None:intergenic |
AACAAAGGAGGTTGTTTAGG+AGG | 0.475654 | 4.3:+37884343 | MS.gene54596:CDS |
GGAAGTAATAGTTTGTAGAT+TGG | 0.475694 | 4.3:-37905914 | None:intergenic |
TTGCCTCCGCAAGCTGAGAA+AGG | 0.479865 | 4.3:+37890526 | MS.gene54596:CDS |
AAATTGCCAATGCTTATCAT+AGG | 0.480247 | 4.3:-37906056 | None:intergenic |
TCTCCAAGATATTCCTCATC+CGG | 0.481001 | 4.3:-37906634 | None:intergenic |
TGCGTCTGTGTTGCCAAGGT+TGG | 0.481745 | 4.3:+37890555 | MS.gene54596:CDS |
GTTACACCAGGCTCTGATGT+TGG | 0.481878 | 4.3:-37906820 | None:intergenic |
GAGCCTGGTGTAACAGGAAA+AGG | 0.483878 | 4.3:+37906829 | MS.gene54596:CDS |
GAGAAACGATTGAGCCGGCT+TGG | 0.485512 | 4.3:+37906653 | MS.gene54596:CDS |
TGCCTCCGCAAGCTGAGAAA+GGG | 0.489278 | 4.3:+37890527 | MS.gene54596:CDS |
CTTCCACTGATCTATGCGTC+TGG | 0.491600 | 4.3:-37887463 | None:intergenic |
GTTAGCTCCGAGCTAGATCC+CGG | 0.491907 | 4.3:+37884552 | MS.gene54596:CDS |
TGCGTGGAAAGCCGATTGTA+AGG | 0.492059 | 4.3:-37890410 | None:intergenic |
TAAGACCATCATTTGCATAA+GGG | 0.494543 | 4.3:-37906174 | None:intergenic |
ATGACAACCCTGATGATAAG+AGG | 0.495085 | 4.3:+37887654 | MS.gene54596:CDS |
GAGACAAAATTGGAGAAGGA+AGG | 0.497417 | 4.3:+37887422 | MS.gene54596:intron |
ATTGATAAGGTTAAGAGAAG+AGG | 0.497584 | 4.3:+37889998 | MS.gene54596:CDS |
GGGAGGTTGATGGAGCTTGA+AGG | 0.499581 | 4.3:+37906718 | MS.gene54596:CDS |
TCTGAGAAGGATTCGTCCCT+CGG | 0.504722 | 4.3:-37890358 | None:intergenic |
ACGGTCTCAATGTGCTATCA+TGG | 0.506109 | 4.3:-37905541 | None:intergenic |
TTCAGGAATAGAAATGGTGC+TGG | 0.509228 | 4.3:+37906772 | MS.gene54596:CDS |
AAGACCCTTCGGACAGCGAA+TGG | 0.509994 | 4.3:+37906506 | MS.gene54596:CDS |
TTGACTCATTGTTATAGTAG+TGG | 0.511572 | 4.3:-37906240 | None:intergenic |
ATGTTGTTTCGTGCAATGGC+CGG | 0.516262 | 4.3:-37906475 | None:intergenic |
TATGGATTAGGTCATTTGGA+AGG | 0.517217 | 4.3:-37906090 | None:intergenic |
TTCTTGCGTCTGTGTTGCCA+AGG | 0.521427 | 4.3:+37890551 | MS.gene54596:CDS |
ACTGTTCAACCAACAGTTGG+AGG | 0.522239 | 4.3:+37884450 | MS.gene54596:CDS |
TTGAAGCCAACATCAGAGCC+TGG | 0.522494 | 4.3:+37906814 | MS.gene54596:CDS |
TTTGGAAGACAGACTATAGC+AGG | 0.522688 | 4.3:+37890909 | MS.gene54596:CDS |
ATCTTACTGTCCATTGTGGC+GGG | 0.524956 | 4.3:-37890625 | None:intergenic |
AGGCATGTTGTTTCGTGCAA+TGG | 0.525554 | 4.3:-37906479 | None:intergenic |
GCAAAGAACATCCATATCCT+AGG | 0.527336 | 4.3:+37890150 | MS.gene54596:CDS |
AGACCCTTCGGACAGCGAAT+GGG | 0.527739 | 4.3:+37906507 | MS.gene54596:CDS |
GAGAAAAGCCCTCCAACTGT+TGG | 0.528736 | 4.3:-37884459 | None:intergenic |
ATTGGTTCCTCTTGCCAAGC+CGG | 0.531139 | 4.3:-37906667 | None:intergenic |
TCAGAAATGGCTATAGAAAG+AGG | 0.531378 | 4.3:+37884480 | MS.gene54596:CDS |
CTTAAACGACCTGTTCTTGG+TGG | 0.533575 | 4.3:+37890128 | MS.gene54596:CDS |
TTGACAAGCCTGACCAACCT+TGG | 0.535049 | 4.3:-37890568 | None:intergenic |
ACCATCAACTTGTTAGTCAC+TGG | 0.535909 | 4.3:+37905699 | MS.gene54596:CDS |
AATCCTTCTGGTGTTTCAGA+TGG | 0.536422 | 4.3:-37889978 | None:intergenic |
GCACAACATTATATGGATCA+AGG | 0.536766 | 4.3:+37905501 | MS.gene54596:CDS |
ATGGATTAGGTCATTTGGAA+GGG | 0.539773 | 4.3:-37906089 | None:intergenic |
TTAGCTCGGCCGCCAATTGG+CGG | 0.540332 | 4.3:+37905575 | MS.gene54596:CDS |
TCATCTATGGCTGAGAAAAG+AGG | 0.540800 | 4.3:-37890481 | None:intergenic |
GATTACCCTTATGCAAATGA+TGG | 0.542032 | 4.3:+37906169 | MS.gene54596:CDS |
AAACACCAGAAGGATTGATA+AGG | 0.546240 | 4.3:+37889985 | MS.gene54596:CDS |
CTGTCCGAAGGGTCTTCTGT+AGG | 0.547242 | 4.3:-37906499 | None:intergenic |
GAGGAAGTCAGAAAACTTGA+AGG | 0.554158 | 4.3:+37905479 | MS.gene54596:CDS |
TTTGGTTACTTCCAATACCA+TGG | 0.556225 | 4.3:-37884272 | None:intergenic |
CATCTATGGCTGAGAAAAGA+GGG | 0.557786 | 4.3:-37890480 | None:intergenic |
AGAAACCCTTTCTCAGCTTG+CGG | 0.559756 | 4.3:-37890532 | None:intergenic |
TTGGAGAAGGAAGGAATCAA+AGG | 0.560037 | 4.3:+37887431 | MS.gene54596:CDS |
CAATAGCCTATGATAAGCAT+TGG | 0.560181 | 4.3:+37906050 | MS.gene54596:CDS |
CTTCCAATACCATGGAGACA+TGG | 0.561407 | 4.3:-37884264 | None:intergenic |
TCTTGGAGAAACGATTGAGC+CGG | 0.561911 | 4.3:+37906648 | MS.gene54596:CDS |
AGATATTGGTGCAGTTCTTG+TGG | 0.562515 | 4.3:+37887529 | MS.gene54596:CDS |
AAAAGAGACAAAATTGGAGA+AGG | 0.563624 | 4.3:+37887418 | MS.gene54596:intron |
CTGAAAACTTTACGAGGCAA+TGG | 0.564230 | 4.3:+37890023 | MS.gene54596:CDS |
GAAGCACTTATAAATGCAGA+TGG | 0.564500 | 4.3:+37905977 | MS.gene54596:CDS |
TCCATTGTGTACCTAAAATG+TGG | 0.564722 | 4.3:-37905935 | None:intergenic |
GAGTTGCTTTAATTCTGAGA+AGG | 0.565436 | 4.3:-37890371 | None:intergenic |
CGTTGGCGATCGAGTTAGCT+CGG | 0.566042 | 4.3:+37905561 | MS.gene54596:CDS |
AACCCTTTCTCAGCTTGCGG+AGG | 0.566717 | 4.3:-37890529 | None:intergenic |
GTCATAGCTTGAATTTGCGA+AGG | 0.572643 | 4.3:-37906574 | None:intergenic |
AGTTCCCATTCGCTGTCCGA+AGG | 0.574184 | 4.3:-37906511 | None:intergenic |
CCAAATGACCTAATCCATAG+AGG | 0.574379 | 4.3:+37906094 | MS.gene54596:CDS |
GACCATTGTTTGGATTACAT+CGG | 0.574726 | 4.3:+37906393 | MS.gene54596:CDS |
TGACTTACCGGGATCTAGCT+CGG | 0.577812 | 4.3:-37884559 | None:intergenic |
TTTCTGACTTCCTCGACCAA+CGG | 0.578983 | 4.3:-37905470 | None:intergenic |
CAGAAATGGCTATAGAAAGA+GGG | 0.580132 | 4.3:+37884481 | MS.gene54596:CDS |
CAATTGGCGGAAAGCCAGAA+TGG | 0.580426 | 4.3:+37905588 | MS.gene54596:CDS |
TTGTTGCTCAATCATTTCAG+TGG | 0.580753 | 4.3:-37893133 | None:intergenic |
CTGTTCAACCAACAGTTGGA+GGG | 0.583789 | 4.3:+37884451 | MS.gene54596:CDS |
ACACCAGTTGAGTGCCAAGT+AGG | 0.585215 | 4.3:-37905626 | None:intergenic |
TTGAACAAGCCATGTCTCCA+TGG | 0.586444 | 4.3:+37884255 | MS.gene54596:CDS |
GTTACTGTTCAACCAACAGT+TGG | 0.586551 | 4.3:+37884447 | MS.gene54596:CDS |
GATTGAGCCGGCTTGGCAAG+AGG | 0.589180 | 4.3:+37906660 | MS.gene54596:CDS |
TATCTTACTGTCCATTGTGG+CGG | 0.591570 | 4.3:-37890626 | None:intergenic |
GGTTGTGAAAACAGCTGTAG+TGG | 0.595530 | 4.3:+37890441 | MS.gene54596:CDS |
GTTGGTCAGGCTTGTCAATG+AGG | 0.596030 | 4.3:+37890573 | MS.gene54596:CDS |
GTTCCCATTCGCTGTCCGAA+GGG | 0.597179 | 4.3:-37906510 | None:intergenic |
TTTGGTCAGTATACTTACGC+TGG | 0.598381 | 4.3:+37906436 | MS.gene54596:CDS |
TGCTATAATGTAAGGCTCTG+TGG | 0.599707 | 4.3:-37905864 | None:intergenic |
CATGCCTACAGAAGACCCTT+CGG | 0.600883 | 4.3:+37906495 | MS.gene54596:CDS |
CCACTGATCTATGCGTCTGG+TGG | 0.602891 | 4.3:-37887460 | None:intergenic |
TGGTATGAGATTAGAAATGT+TGG | 0.603834 | 4.3:+37906298 | MS.gene54596:CDS |
AAATGACCCTCTTATCATCA+GGG | 0.603935 | 4.3:-37887661 | None:intergenic |
TTGAAGGTATAATAGATGAG+AGG | 0.604595 | 4.3:+37906734 | MS.gene54596:CDS |
AAATATCTTACTGTCCATTG+TGG | 0.606843 | 4.3:-37890629 | None:intergenic |
TTCGCAAATTCAAGCTATGA+CGG | 0.607036 | 4.3:+37906576 | MS.gene54596:CDS |
CGAGCTAACTCGATCGCCAA+CGG | 0.607861 | 4.3:-37905560 | None:intergenic |
TCAGGCTTGTCAATGAGGCT+AGG | 0.608501 | 4.3:+37890578 | MS.gene54596:CDS |
TGTGGAAAATGAGCATAGAA+GGG | 0.608699 | 4.3:+37887547 | MS.gene54596:CDS |
TCACAACCGGTAAAAGTGCG+TGG | 0.609810 | 4.3:-37890426 | None:intergenic |
AGGACATGCTACAGTTGAAG+AGG | 0.610205 | 4.3:+37893161 | MS.gene54596:CDS |
GAAGCTGAATTTGAAGTACC+AGG | 0.611074 | 4.3:+37887497 | MS.gene54596:CDS |
CTTCCAGTTCTACAACGCCT+AGG | 0.613399 | 4.3:-37890167 | None:intergenic |
TTGTTGCATCCAATTGGTCA+CGG | 0.613442 | 4.3:+37890941 | MS.gene54596:CDS |
TGATAGCACATTGAGACCGT+TGG | 0.613528 | 4.3:+37905544 | MS.gene54596:CDS |
TCATAGCTTGAATTTGCGAA+GGG | 0.614455 | 4.3:-37906573 | None:intergenic |
GAGATTAGAAATGTTGGTCA+CGG | 0.614978 | 4.3:+37906304 | MS.gene54596:CDS |
CGGATAAAGAATTACAAGCA+TGG | 0.616013 | 4.3:+37906275 | MS.gene54596:CDS |
TTGTGGCGGGAGTCTCGAAA+CGG | 0.619459 | 4.3:-37890612 | None:intergenic |
ACTTTACGAGGCAATGGACA+AGG | 0.619463 | 4.3:+37890029 | MS.gene54596:CDS |
ATGATTGAGCAACAAATCAG+AGG | 0.621173 | 4.3:+37893141 | MS.gene54596:CDS |
TGACAACCCTGATGATAAGA+GGG | 0.622995 | 4.3:+37887655 | MS.gene54596:CDS |
AAAGATCCAAATGCCCCACA+TGG | 0.624536 | 4.3:+37906127 | MS.gene54596:CDS |
TTTCGAGACTCCCGCCACAA+TGG | 0.628813 | 4.3:+37890615 | MS.gene54596:CDS |
TCATAAACCAAAAGAAACAA+AGG | 0.629237 | 4.3:+37884328 | MS.gene54596:CDS |
CCCCGATGTAATCCAAACAA+TGG | 0.629499 | 4.3:-37906395 | None:intergenic |
TGAGTCAAGAACTGTTGAGT+CGG | 0.633371 | 4.3:+37906255 | MS.gene54596:CDS |
TACATCGGGGCATCATGCTG+CGG | 0.637437 | 4.3:+37906408 | MS.gene54596:CDS |
TACGATGTGTATAATGACCT+CGG | 0.643812 | 4.3:+37890083 | MS.gene54596:CDS |
GTAACAATGTCTATGTTCCG+AGG | 0.644422 | 4.3:+37890341 | MS.gene54596:CDS |
CCACCAGACGCATAGATCAG+TGG | 0.649521 | 4.3:+37887460 | MS.gene54596:CDS |
GTGACCAATTGGATGCAACA+AGG | 0.655202 | 4.3:-37890939 | None:intergenic |
CCATTGTTTGGATTACATCG+GGG | 0.657108 | 4.3:+37906395 | MS.gene54596:CDS |
TAACAATGTCTATGTTCCGA+GGG | 0.658588 | 4.3:+37890342 | MS.gene54596:CDS |
TTACCATCTGAAACACCAGA+AGG | 0.662031 | 4.3:+37889975 | MS.gene54596:CDS |
TTGGCGGAAAGCCAGAATGG+AGG | 0.667120 | 4.3:+37905591 | MS.gene54596:CDS |
GGTAGCCAGAGTCATGAGCA+AGG | 0.680144 | 4.3:-37905679 | None:intergenic |
TAAACCAAAAGAAACAAAGG+AGG | 0.689233 | 4.3:+37884331 | MS.gene54596:CDS |
GTGACAAGAAAGACGAACCA+TGG | 0.691218 | 4.3:+37906326 | MS.gene54596:CDS |
GGCCTACCTGTATCGCAACG+AGG | 0.706133 | 4.3:-37890191 | None:intergenic |
GTGCAGCAAAATCAAAGCTG+TGG | 0.713390 | 4.3:+37884371 | MS.gene54596:CDS |
ACTTGACAAAATATCCAACA+CGG | 0.724220 | 4.3:-37906605 | None:intergenic |
ATAAAGAATTACAAGCATGG+TGG | 0.729305 | 4.3:+37906278 | MS.gene54596:CDS |
ACAAGAAAGACGAACCATGG+TGG | 0.729803 | 4.3:+37906329 | MS.gene54596:CDS |
GAGGAACTGAAAACTTTACG+AGG | 0.731350 | 4.3:+37890017 | MS.gene54596:CDS |
TATGACGGTGATGACCGTGT+TGG | 0.742214 | 4.3:+37906591 | MS.gene54596:CDS |
TGTTGGTTGAACAGTAACTG+TGG | 0.746011 | 4.3:-37884442 | None:intergenic |
GATCGCTGTCTGGATCACCG+AGG | 0.820366 | 4.3:-37890100 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 37884213 | 37906876 | 37884213 | ID=MS.gene54596 |
chr4.3 | mRNA | 37884213 | 37906876 | 37884213 | ID=MS.gene54596.t1;Parent=MS.gene54596 |
chr4.3 | exon | 37884213 | 37884573 | 37884213 | ID=MS.gene54596.t1.exon1;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37884213 | 37884573 | 37884213 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
chr4.3 | exon | 37887423 | 37887694 | 37887423 | ID=MS.gene54596.t1.exon2;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37887423 | 37887694 | 37887423 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
chr4.3 | exon | 37889969 | 37890206 | 37889969 | ID=MS.gene54596.t1.exon3;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37889969 | 37890206 | 37889969 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
chr4.3 | exon | 37890320 | 37890640 | 37890320 | ID=MS.gene54596.t1.exon4;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37890320 | 37890640 | 37890320 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
chr4.3 | exon | 37890877 | 37890962 | 37890877 | ID=MS.gene54596.t1.exon5;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37890877 | 37890962 | 37890877 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
chr4.3 | exon | 37893072 | 37893182 | 37893072 | ID=MS.gene54596.t1.exon6;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37893072 | 37893182 | 37893072 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
chr4.3 | exon | 37905419 | 37905720 | 37905419 | ID=MS.gene54596.t1.exon7;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37905419 | 37905720 | 37905419 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
chr4.3 | exon | 37905847 | 37906876 | 37905847 | ID=MS.gene54596.t1.exon8;Parent=MS.gene54596.t1 |
chr4.3 | CDS | 37905847 | 37906876 | 37905847 | ID=cds.MS.gene54596.t1;Parent=MS.gene54596.t1 |
Gene Sequence |
Protein sequence |