Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55005.t1 | GAU32770.1 | 94.5 | 439 | 24 | 0 | 1 | 439 | 1 | 439 | 2.40E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55005.t1 | P48724 | 77.9 | 444 | 92 | 2 | 1 | 439 | 1 | 443 | 5.6e-133 | 475.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55005.t1 | A0A2Z6N935 | 94.5 | 439 | 24 | 0 | 1 | 439 | 1 | 439 | 1.7e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049680 | MS.gene55005 | 0.808497 | 3.01E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene55005 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene051019 | MS.gene55005 | 0.808348 | 3.24E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene55005 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene55005 | -0.805088 | 1.58E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene55005 | 0.819258 | 1.28E-52 | -1.69E-46 |
| MS.gene056363 | MS.gene55005 | 0.816068 | 6.69E-52 | -1.69E-46 |
| MS.gene056677 | MS.gene55005 | 0.807575 | 4.73E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene55005 | 0.819679 | 1.02E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene55005 | 0.816198 | 6.26E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene55005 | -0.803112 | 4.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55005.t1 | MTR_7g082940 | 99.317 | 439 | 3 | 0 | 1 | 439 | 1 | 439 | 0.0 | 896 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55005.t1 | AT1G36730 | 65.708 | 452 | 129 | 9 | 1 | 439 | 1 | 439 | 0.0 | 529 |
| MS.gene55005.t1 | AT1G77840 | 62.700 | 437 | 150 | 7 | 1 | 432 | 1 | 429 | 1.88e-178 | 506 |
Find 102 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAACCCTTCTTACTTTC+TGG | 0.085543 | 7.2:+24379520 | None:intergenic |
| CCTCATGGCCTTCTTGTCTT+TGG | 0.144391 | 7.2:+24379501 | None:intergenic |
| GTAATTATGATCTCCGTTTC+AGG | 0.193424 | 7.2:+24379640 | None:intergenic |
| TCTTACACAACCAAATATTT+TGG | 0.197246 | 7.2:-24379802 | MS.gene55005:CDS |
| GTTACCTCTGCCCTCAATTT+TGG | 0.221238 | 7.2:+24379885 | None:intergenic |
| CTTCCAAATCTGAGCATTCT+TGG | 0.237570 | 7.2:+24378721 | None:intergenic |
| TCACAGCACTTAACTGTTCT+TGG | 0.242857 | 7.2:+24379221 | None:intergenic |
| CTTTCTCAATGTCACCAAAT+AGG | 0.248803 | 7.2:+24378969 | None:intergenic |
| TCAAAATTTGATGAGAAAAC+TGG | 0.270680 | 7.2:-24379760 | MS.gene55005:CDS |
| AAGTTCACAGCCAAAATATT+TGG | 0.271475 | 7.2:+24379792 | None:intergenic |
| TTTCTCAATGTCACCAAATA+GGG | 0.300713 | 7.2:+24378970 | None:intergenic |
| CCAATGGGCCACCAATTCTT+TGG | 0.325790 | 7.2:+24379042 | None:intergenic |
| GCTCTGTACGAAGCCCTATT+TGG | 0.327975 | 7.2:-24378983 | MS.gene55005:CDS |
| AAAATATTTGGTTGTGTAAG+AGG | 0.349180 | 7.2:+24379804 | None:intergenic |
| CATGATACTGCGAAACTTGC+TGG | 0.365090 | 7.2:-24379715 | MS.gene55005:CDS |
| GGTTGATATTGCAAAAGCTT+TGG | 0.398821 | 7.2:-24379836 | MS.gene55005:CDS |
| ACTCCAAGAATGCTCAGATT+TGG | 0.403080 | 7.2:-24378724 | MS.gene55005:CDS |
| AAGAAATACGTCCAGTGTTA+TGG | 0.403203 | 7.2:-24379673 | MS.gene55005:CDS |
| CAAAGAATTGGTGGCCCATT+GGG | 0.405782 | 7.2:-24379041 | MS.gene55005:CDS |
| ATGTGAAACCCTTCATTGAA+TGG | 0.406135 | 7.2:-24378697 | MS.gene55005:CDS |
| GCTGCTTTCTCCTCCTTCTC+AGG | 0.406400 | 7.2:+24379166 | None:intergenic |
| GACCAGAGTCTTGTAGTTCA+TGG | 0.417161 | 7.2:+24379102 | None:intergenic |
| TTCTTTGAGTGCATTGGAAG+TGG | 0.423902 | 7.2:+24378835 | None:intergenic |
| AAGTGCTGTGACAGCTGATA+TGG | 0.429318 | 7.2:-24379209 | MS.gene55005:CDS |
| CACAAGCAGCACATTTCATC+TGG | 0.435084 | 7.2:+24379602 | None:intergenic |
| GTAAGTGACAATCCTGCTAA+TGG | 0.439980 | 7.2:-24379136 | MS.gene55005:CDS |
| AGGCATCTTGTACCTGTAGA+AGG | 0.441993 | 7.2:+24379918 | None:intergenic |
| AGCAACTTCTTTGAGTGCAT+TGG | 0.447914 | 7.2:+24378829 | None:intergenic |
| CCAAAGAATTGGTGGCCCAT+TGG | 0.450316 | 7.2:-24379042 | MS.gene55005:CDS |
| GAGTTACCATTACCATTAGC+AGG | 0.455049 | 7.2:+24379124 | None:intergenic |
| CTATTTGGTGACATTGAGAA+AGG | 0.458675 | 7.2:-24378968 | MS.gene55005:CDS |
| AACCCTTCTTACTTTCTGGT+GGG | 0.458969 | 7.2:+24379524 | None:intergenic |
| CTCCTTCTCAGGTTCAGTTG+TGG | 0.464133 | 7.2:+24379177 | None:intergenic |
| AGGTGCTTCGGCCAAAGAAT+TGG | 0.467578 | 7.2:-24379053 | MS.gene55005:CDS |
| ATCAAAGCTGATTTGAAGAA+AGG | 0.469806 | 7.2:-24379073 | MS.gene55005:CDS |
| TGCACTCAAAGAAGTTGCTC+TGG | 0.471313 | 7.2:-24378825 | MS.gene55005:CDS |
| TGCTGCAGTTGCTGTGGAAG+AGG | 0.472780 | 7.2:-24378906 | MS.gene55005:CDS |
| CTCCTTCTCAGCTCTCCTCA+TGG | 0.475103 | 7.2:+24379486 | None:intergenic |
| GACAATCCTGCTAATGGTAA+TGG | 0.475544 | 7.2:-24379130 | MS.gene55005:CDS |
| GAACCCTTCTTACTTTCTGG+TGG | 0.476202 | 7.2:+24379523 | None:intergenic |
| GACAGGAAGTGATGCCCAAT+GGG | 0.489468 | 7.2:+24379027 | None:intergenic |
| GAAAGAGGCTGTCAAGAAGA+AGG | 0.489680 | 7.2:-24379416 | MS.gene55005:CDS |
| AGCTGAGAAGGAGAGACTTA+AGG | 0.490596 | 7.2:-24379476 | MS.gene55005:CDS |
| GGAGGAGAAAGCAGCCGCTA+AGG | 0.495057 | 7.2:-24379158 | MS.gene55005:CDS |
| TAGAATGATTACCAAAATTG+AGG | 0.497188 | 7.2:-24379896 | MS.gene55005:CDS |
| TGATTTGAAGAAAGGTGCTT+CGG | 0.497478 | 7.2:-24379065 | MS.gene55005:CDS |
| ACTGGGACTTCTCATGTTAA+CGG | 0.498264 | 7.2:-24379742 | MS.gene55005:CDS |
| GGCCATGAGGAGAGCTGAGA+AGG | 0.498883 | 7.2:-24379488 | MS.gene55005:CDS |
| ACTCTGAAGCCATTCAATGA+AGG | 0.504169 | 7.2:+24378688 | None:intergenic |
| TCTTGATGAAGTTCTCAAGA+AGG | 0.510016 | 7.2:+24379692 | None:intergenic |
| TATTTGGTTGTGTAAGAGGC+TGG | 0.513908 | 7.2:+24379808 | None:intergenic |
| AGAATGATTACCAAAATTGA+GGG | 0.514225 | 7.2:-24379895 | MS.gene55005:CDS |
| CAAAATTTGATGAGAAAACT+GGG | 0.516890 | 7.2:-24379759 | MS.gene55005:CDS |
| AAAATTGAGGGCAGAGGTAA+CGG | 0.522867 | 7.2:-24379883 | MS.gene55005:CDS |
| CTCTGAAGCCATTCAATGAA+GGG | 0.525212 | 7.2:+24378689 | None:intergenic |
| CCTTGCTGCTGCAGTTGCTG+TGG | 0.525923 | 7.2:-24378912 | MS.gene55005:CDS |
| TACGTCCAGTGTTATGGTTG+TGG | 0.528903 | 7.2:-24379667 | MS.gene55005:CDS |
| GCTGTTGCTGCGTGCAATTG+AGG | 0.530161 | 7.2:-24378873 | MS.gene55005:CDS |
| GGAAGGTGAAGCAGCTGATG+AGG | 0.533868 | 7.2:-24379455 | MS.gene55005:CDS |
| GAACCCACCAGAAAGTAAGA+AGG | 0.542111 | 7.2:-24379527 | MS.gene55005:CDS |
| ACAGCGATGATGCCTTCTAC+AGG | 0.542158 | 7.2:-24379930 | MS.gene55005:CDS |
| AGAAGTTGCTCTGGTTCTGA+AGG | 0.544499 | 7.2:-24378816 | MS.gene55005:CDS |
| TGCTTCGGCCAAAGAATTGG+TGG | 0.545928 | 7.2:-24379050 | MS.gene55005:CDS |
| GCTGCAGTTGCTGTGGAAGA+GGG | 0.548653 | 7.2:-24378905 | MS.gene55005:CDS |
| CTCCACAACTGAACCTGAGA+AGG | 0.551846 | 7.2:-24379179 | MS.gene55005:CDS |
| TGTCAAGAAGAAGGGAGCTA+AGG | 0.553508 | 7.2:-24379407 | MS.gene55005:CDS |
| GCGCTACAGAACATTGGTGC+TGG | 0.561917 | 7.2:-24379955 | MS.gene55005:CDS |
| ACTCTATGATGCTGATGCAC+TGG | 0.563051 | 7.2:-24378792 | MS.gene55005:CDS |
| TATTTGGTGACATTGAGAAA+GGG | 0.563328 | 7.2:-24378967 | MS.gene55005:CDS |
| GAGTGCAGAGTCAGAGTCGG+AGG | 0.563653 | 7.2:-24378669 | MS.gene55005:CDS |
| AATTGCACGCAGCAACAGCA+AGG | 0.564949 | 7.2:+24378877 | None:intergenic |
| ATACATCACTAGAGGCTGCT+CGG | 0.571789 | 7.2:-24379252 | MS.gene55005:CDS |
| AGGATTGTCACTTACCTTAG+CGG | 0.576783 | 7.2:+24379144 | None:intergenic |
| TCGAAGTCAAGTTGATGAGA+AGG | 0.577041 | 7.2:-24379314 | MS.gene55005:CDS |
| AGACAGGAAGTGATGCCCAA+TGG | 0.578154 | 7.2:+24379026 | None:intergenic |
| CTCCATGAACTACAAGACTC+TGG | 0.579014 | 7.2:-24379104 | MS.gene55005:CDS |
| TGGTATCAAGAAGGGCTGAA+AGG | 0.585394 | 7.2:-24378749 | MS.gene55005:CDS |
| TCATCAACTTGACTTCGAGT+AGG | 0.585932 | 7.2:+24379319 | None:intergenic |
| AAAGAGGCTGTCAAGAAGAA+GGG | 0.588018 | 7.2:-24379415 | MS.gene55005:CDS |
| GAAGGGTTCCAAAGACAAGA+AGG | 0.588354 | 7.2:-24379509 | MS.gene55005:CDS |
| TGGTTGTGGAAATCCTGAAA+CGG | 0.589012 | 7.2:-24379653 | MS.gene55005:CDS |
| ATTACCAAAATTGAGGGCAG+AGG | 0.589733 | 7.2:-24379889 | MS.gene55005:CDS |
| ATATTGCAAAAGCTTTGGCA+AGG | 0.590765 | 7.2:-24379831 | MS.gene55005:CDS |
| CACAACTGAACCTGAGAAGG+AGG | 0.594831 | 7.2:-24379176 | MS.gene55005:CDS |
| AACCCACCAGAAAGTAAGAA+GGG | 0.595225 | 7.2:-24379526 | MS.gene55005:CDS |
| TCAAGTTGATGAGAAGGATG+AGG | 0.595268 | 7.2:-24379308 | MS.gene55005:CDS |
| CAGATGAAATGTGCTGCTTG+TGG | 0.595832 | 7.2:-24379601 | MS.gene55005:CDS |
| TATTGCAGTGGTATCAAGAA+GGG | 0.597919 | 7.2:-24378757 | MS.gene55005:CDS |
| CAAAACGAATATTGTCAACA+TGG | 0.605759 | 7.2:-24379857 | MS.gene55005:CDS |
| CTATGATGCTGATGCACTGG+AGG | 0.606134 | 7.2:-24378789 | MS.gene55005:CDS |
| TCAGAGTGCAGAGTCAGAGT+CGG | 0.609346 | 7.2:-24378672 | MS.gene55005:CDS |
| ATATTGCAGTGGTATCAAGA+AGG | 0.611168 | 7.2:-24378758 | MS.gene55005:CDS |
| ATCATGGCGCTACAGAACAT+TGG | 0.617816 | 7.2:-24379961 | MS.gene55005:CDS |
| GATTTCCACAACCATAACAC+TGG | 0.620449 | 7.2:+24379662 | None:intergenic |
| GAGAAGGAGAGACTTAAGGA+AGG | 0.629155 | 7.2:-24379472 | MS.gene55005:CDS |
| ATTGCACGCAGCAACAGCAA+GGG | 0.634086 | 7.2:+24378878 | None:intergenic |
| CCACAGCAACTGCAGCAGCA+AGG | 0.636707 | 7.2:+24378912 | None:intergenic |
| ATGAACTACAAGACTCTGGT+CGG | 0.642011 | 7.2:-24379100 | MS.gene55005:CDS |
| GCAAACAGATACATCACTAG+AGG | 0.665816 | 7.2:-24379260 | MS.gene55005:CDS |
| AGGAAGAGCACATATTGCAG+TGG | 0.689599 | 7.2:-24378769 | MS.gene55005:CDS |
| CCAAAGACAAGAAGGCCATG+AGG | 0.693166 | 7.2:-24379501 | MS.gene55005:CDS |
| AAGATGAAGATGATGTACAG+TGG | 0.782595 | 7.2:-24379282 | MS.gene55005:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAATATTTGGTTGTGTAAG+AGG | + | chr7.2:24378818-24378837 | None:intergenic | 25.0% |
| ! | AGAATGATTACCAAAATTGA+GGG | - | chr7.2:24378724-24378743 | MS.gene55005:CDS | 25.0% |
| ! | CAAAATTTGATGAGAAAACT+GGG | - | chr7.2:24378860-24378879 | MS.gene55005:CDS | 25.0% |
| ! | TAGAATGATTACCAAAATTG+AGG | - | chr7.2:24378723-24378742 | MS.gene55005:CDS | 25.0% |
| ! | TCAAAATTTGATGAGAAAAC+TGG | - | chr7.2:24378859-24378878 | MS.gene55005:CDS | 25.0% |
| !! | TCTTACACAACCAAATATTT+TGG | - | chr7.2:24378817-24378836 | MS.gene55005:CDS | 25.0% |
| !!! | TCAATTTTGGTAATCATTCT+AGG | + | chr7.2:24378724-24378743 | None:intergenic | 25.0% |
| AAGTTCACAGCCAAAATATT+TGG | + | chr7.2:24378830-24378849 | None:intergenic | 30.0% | |
| CAAAACGAATATTGTCAACA+TGG | - | chr7.2:24378762-24378781 | MS.gene55005:CDS | 30.0% | |
| TCTTCAAGGAAAAAAGGAAA+TGG | - | chr7.2:24379255-24379274 | MS.gene55005:CDS | 30.0% | |
| TTTCTCAATGTCACCAAATA+GGG | + | chr7.2:24379652-24379671 | None:intergenic | 30.0% | |
| ! | TATTTGGTGACATTGAGAAA+GGG | - | chr7.2:24379652-24379671 | MS.gene55005:CDS | 30.0% |
| !! | ATCAAAGCTGATTTGAAGAA+AGG | - | chr7.2:24379546-24379565 | MS.gene55005:CDS | 30.0% |
| !!! | AAATATTTTGGCTGTGAACT+TGG | - | chr7.2:24378829-24378848 | MS.gene55005:CDS | 30.0% |
| AAGAAATACGTCCAGTGTTA+TGG | - | chr7.2:24378946-24378965 | MS.gene55005:CDS | 35.0% | |
| AAGATGAAGATGATGTACAG+TGG | - | chr7.2:24379337-24379356 | MS.gene55005:CDS | 35.0% | |
| ACAAGCTCTTCAAGGAAAAA+AGG | - | chr7.2:24379249-24379268 | MS.gene55005:CDS | 35.0% | |
| ATATTGCAGTGGTATCAAGA+AGG | - | chr7.2:24379861-24379880 | MS.gene55005:CDS | 35.0% | |
| ATGTGAAACCCTTCATTGAA+TGG | - | chr7.2:24379922-24379941 | MS.gene55005:CDS | 35.0% | |
| CTTTCTCAATGTCACCAAAT+AGG | + | chr7.2:24379653-24379672 | None:intergenic | 35.0% | |
| GTAATTATGATCTCCGTTTC+AGG | + | chr7.2:24378982-24379001 | None:intergenic | 35.0% | |
| TATTGCAGTGGTATCAAGAA+GGG | - | chr7.2:24379862-24379881 | MS.gene55005:CDS | 35.0% | |
| TCTTGATGAAGTTCTCAAGA+AGG | + | chr7.2:24378930-24378949 | None:intergenic | 35.0% | |
| ! | ATATTGCAAAAGCTTTGGCA+AGG | - | chr7.2:24378788-24378807 | MS.gene55005:CDS | 35.0% |
| ! | CTATTTGGTGACATTGAGAA+AGG | - | chr7.2:24379651-24379670 | MS.gene55005:CDS | 35.0% |
| ! | GGTTGATATTGCAAAAGCTT+TGG | - | chr7.2:24378783-24378802 | MS.gene55005:CDS | 35.0% |
| !! | TGATTTGAAGAAAGGTGCTT+CGG | - | chr7.2:24379554-24379573 | MS.gene55005:CDS | 35.0% |
| AAAATTGAGGGCAGAGGTAA+CGG | - | chr7.2:24378736-24378755 | MS.gene55005:CDS | 40.0% | |
| AAAGAGGCTGTCAAGAAGAA+GGG | - | chr7.2:24379204-24379223 | MS.gene55005:CDS | 40.0% | |
| AACCCACCAGAAAGTAAGAA+GGG | - | chr7.2:24379093-24379112 | MS.gene55005:CDS | 40.0% | |
| ACTCCAAGAATGCTCAGATT+TGG | - | chr7.2:24379895-24379914 | MS.gene55005:CDS | 40.0% | |
| ACTGGGACTTCTCATGTTAA+CGG | - | chr7.2:24378877-24378896 | MS.gene55005:CDS | 40.0% | |
| AGCAACTTCTTTGAGTGCAT+TGG | + | chr7.2:24379793-24379812 | None:intergenic | 40.0% | |
| ATGAACTACAAGACTCTGGT+CGG | - | chr7.2:24379519-24379538 | MS.gene55005:CDS | 40.0% | |
| ATTACCAAAATTGAGGGCAG+AGG | - | chr7.2:24378730-24378749 | MS.gene55005:CDS | 40.0% | |
| CTGCAAAAACAAGCTCTTCA+AGG | - | chr7.2:24379241-24379260 | MS.gene55005:CDS | 40.0% | |
| CTTCCAAATCTGAGCATTCT+TGG | + | chr7.2:24379901-24379920 | None:intergenic | 40.0% | |
| GACAATCCTGCTAATGGTAA+TGG | - | chr7.2:24379489-24379508 | MS.gene55005:CDS | 40.0% | |
| GAGTTACCATTACCATTAGC+AGG | + | chr7.2:24379498-24379517 | None:intergenic | 40.0% | |
| GATTTCCACAACCATAACAC+TGG | + | chr7.2:24378960-24378979 | None:intergenic | 40.0% | |
| GCAAACAGATACATCACTAG+AGG | - | chr7.2:24379359-24379378 | MS.gene55005:CDS | 40.0% | |
| GCTGAAAAAGCTGAAGAAAG+AGG | - | chr7.2:24379188-24379207 | MS.gene55005:CDS | 40.0% | |
| GTAAGTGACAATCCTGCTAA+TGG | - | chr7.2:24379483-24379502 | MS.gene55005:CDS | 40.0% | |
| TATTTGGTTGTGTAAGAGGC+TGG | + | chr7.2:24378814-24378833 | None:intergenic | 40.0% | |
| TCACAGCACTTAACTGTTCT+TGG | + | chr7.2:24379401-24379420 | None:intergenic | 40.0% | |
| TCATCAACTTGACTTCGAGT+AGG | + | chr7.2:24379303-24379322 | None:intergenic | 40.0% | |
| TGGTTGTGGAAATCCTGAAA+CGG | - | chr7.2:24378966-24378985 | MS.gene55005:CDS | 40.0% | |
| TTCTTTGAGTGCATTGGAAG+TGG | + | chr7.2:24379787-24379806 | None:intergenic | 40.0% | |
| TTGGAACCCTTCTTACTTTC+TGG | + | chr7.2:24379102-24379121 | None:intergenic | 40.0% | |
| ! | AACCCTTCTTACTTTCTGGT+GGG | + | chr7.2:24379098-24379117 | None:intergenic | 40.0% |
| ! | AGGATTGTCACTTACCTTAG+CGG | + | chr7.2:24379478-24379497 | None:intergenic | 40.0% |
| ! | ATCTTTTCTTGTGGAGAGAC+AGG | + | chr7.2:24379612-24379631 | None:intergenic | 40.0% |
| !! | ACTCTGAAGCCATTCAATGA+AGG | + | chr7.2:24379934-24379953 | None:intergenic | 40.0% |
| !! | AGAGCACTCATCTTTTCTTG+TGG | + | chr7.2:24379621-24379640 | None:intergenic | 40.0% |
| !! | CTCTGAAGCCATTCAATGAA+GGG | + | chr7.2:24379933-24379952 | None:intergenic | 40.0% |
| !! | TCAAGTTGATGAGAAGGATG+AGG | - | chr7.2:24379311-24379330 | MS.gene55005:CDS | 40.0% |
| !! | TCGAAGTCAAGTTGATGAGA+AGG | - | chr7.2:24379305-24379324 | MS.gene55005:CDS | 40.0% |
| ACTCTATGATGCTGATGCAC+TGG | - | chr7.2:24379827-24379846 | MS.gene55005:CDS | 45.0% | |
| AGCTGAGAAGGAGAGACTTA+AGG | - | chr7.2:24379143-24379162 | MS.gene55005:CDS | 45.0% | |
| AGGCATCTTGTACCTGTAGA+AGG | + | chr7.2:24378704-24378723 | None:intergenic | 45.0% | |
| ATACATCACTAGAGGCTGCT+CGG | - | chr7.2:24379367-24379386 | MS.gene55005:CDS | 45.0% | |
| CACAAGCAGCACATTTCATC+TGG | + | chr7.2:24379020-24379039 | None:intergenic | 45.0% | |
| CATGATACTGCGAAACTTGC+TGG | - | chr7.2:24378904-24378923 | MS.gene55005:CDS | 45.0% | |
| CTCCATGAACTACAAGACTC+TGG | - | chr7.2:24379515-24379534 | MS.gene55005:CDS | 45.0% | |
| GAAAGAGGCTGTCAAGAAGA+AGG | - | chr7.2:24379203-24379222 | MS.gene55005:CDS | 45.0% | |
| GAACCCACCAGAAAGTAAGA+AGG | - | chr7.2:24379092-24379111 | MS.gene55005:CDS | 45.0% | |
| GAACCCTTCTTACTTTCTGG+TGG | + | chr7.2:24379099-24379118 | None:intergenic | 45.0% | |
| GAAGGGTTCCAAAGACAAGA+AGG | - | chr7.2:24379110-24379129 | MS.gene55005:CDS | 45.0% | |
| GAGAAGGAGAGACTTAAGGA+AGG | - | chr7.2:24379147-24379166 | MS.gene55005:CDS | 45.0% | |
| TACGTCCAGTGTTATGGTTG+TGG | - | chr7.2:24378952-24378971 | MS.gene55005:CDS | 45.0% | |
| TGCACTCAAAGAAGTTGCTC+TGG | - | chr7.2:24379794-24379813 | MS.gene55005:CDS | 45.0% | |
| TGGTATCAAGAAGGGCTGAA+AGG | - | chr7.2:24379870-24379889 | MS.gene55005:CDS | 45.0% | |
| TGTCAAGAAGAAGGGAGCTA+AGG | - | chr7.2:24379212-24379231 | MS.gene55005:CDS | 45.0% | |
| ! | AAGTGCTGTGACAGCTGATA+TGG | - | chr7.2:24379410-24379429 | MS.gene55005:CDS | 45.0% |
| ! | AGGAAGAGCACATATTGCAG+TGG | - | chr7.2:24379850-24379869 | MS.gene55005:CDS | 45.0% |
| ! | CAAAGAATTGGTGGCCCATT+GGG | - | chr7.2:24379578-24379597 | MS.gene55005:CDS | 45.0% |
| ! | GACCAGAGTCTTGTAGTTCA+TGG | + | chr7.2:24379520-24379539 | None:intergenic | 45.0% |
| ! | GTTACCTCTGCCCTCAATTT+TGG | + | chr7.2:24378737-24378756 | None:intergenic | 45.0% |
| !! | AGAAGTTGCTCTGGTTCTGA+AGG | - | chr7.2:24379803-24379822 | MS.gene55005:CDS | 45.0% |
| !! | CAGATGAAATGTGCTGCTTG+TGG | - | chr7.2:24379018-24379037 | MS.gene55005:CDS | 45.0% |
| !!! | TTGTGGTTTTGTGTCTGACG+TGG | - | chr7.2:24379035-24379054 | MS.gene55005:CDS | 45.0% |
| AATTGCACGCAGCAACAGCA+AGG | + | chr7.2:24379745-24379764 | None:intergenic | 50.0% | |
| ACAGCGATGATGCCTTCTAC+AGG | - | chr7.2:24378689-24378708 | MS.gene55005:CDS | 50.0% | |
| AGACAGGAAGTGATGCCCAA+TGG | + | chr7.2:24379596-24379615 | None:intergenic | 50.0% | |
| AGGTGCTTCGGCCAAAGAAT+TGG | - | chr7.2:24379566-24379585 | MS.gene55005:CDS | 50.0% | |
| ATTGCACGCAGCAACAGCAA+GGG | + | chr7.2:24379744-24379763 | None:intergenic | 50.0% | |
| CACAACTGAACCTGAGAAGG+AGG | - | chr7.2:24379443-24379462 | MS.gene55005:CDS | 50.0% | |
| CCAAAGACAAGAAGGCCATG+AGG | - | chr7.2:24379118-24379137 | MS.gene55005:CDS | 50.0% | |
| CCAATGGGCCACCAATTCTT+TGG | + | chr7.2:24379580-24379599 | None:intergenic | 50.0% | |
| CCTCATGGCCTTCTTGTCTT+TGG | + | chr7.2:24379121-24379140 | None:intergenic | 50.0% | |
| CTATGATGCTGATGCACTGG+AGG | - | chr7.2:24379830-24379849 | MS.gene55005:CDS | 50.0% | |
| CTCCACAACTGAACCTGAGA+AGG | - | chr7.2:24379440-24379459 | MS.gene55005:CDS | 50.0% | |
| CTCCTTCTCAGGTTCAGTTG+TGG | + | chr7.2:24379445-24379464 | None:intergenic | 50.0% | |
| GACAGGAAGTGATGCCCAAT+GGG | + | chr7.2:24379595-24379614 | None:intergenic | 50.0% | |
| GCTCTGTACGAAGCCCTATT+TGG | - | chr7.2:24379636-24379655 | MS.gene55005:CDS | 50.0% | |
| TCAGAGTGCAGAGTCAGAGT+CGG | - | chr7.2:24379947-24379966 | MS.gene55005:CDS | 50.0% | |
| TGCTTCGGCCAAAGAATTGG+TGG | - | chr7.2:24379569-24379588 | MS.gene55005:CDS | 50.0% | |
| ! | CCAAAGAATTGGTGGCCCAT+TGG | - | chr7.2:24379577-24379596 | MS.gene55005:CDS | 50.0% |
| CTCCTTCTCAGCTCTCCTCA+TGG | + | chr7.2:24379136-24379155 | None:intergenic | 55.0% | |
| GCGCTACAGAACATTGGTGC+TGG | - | chr7.2:24378664-24378683 | MS.gene55005:CDS | 55.0% | |
| GCTGCAGTTGCTGTGGAAGA+GGG | - | chr7.2:24379714-24379733 | MS.gene55005:CDS | 55.0% | |
| GCTGTTGCTGCGTGCAATTG+AGG | - | chr7.2:24379746-24379765 | MS.gene55005:CDS | 55.0% | |
| GGAAGGTGAAGCAGCTGATG+AGG | - | chr7.2:24379164-24379183 | MS.gene55005:CDS | 55.0% | |
| TGCTGCAGTTGCTGTGGAAG+AGG | - | chr7.2:24379713-24379732 | MS.gene55005:CDS | 55.0% | |
| ! | GCTGCTTTCTCCTCCTTCTC+AGG | + | chr7.2:24379456-24379475 | None:intergenic | 55.0% |
| CCACAGCAACTGCAGCAGCA+AGG | + | chr7.2:24379710-24379729 | None:intergenic | 60.0% | |
| CCTTGCTGCTGCAGTTGCTG+TGG | - | chr7.2:24379707-24379726 | MS.gene55005:CDS | 60.0% | |
| GAGTGCAGAGTCAGAGTCGG+AGG | - | chr7.2:24379950-24379969 | MS.gene55005:CDS | 60.0% | |
| GGAGGAGAAAGCAGCCGCTA+AGG | - | chr7.2:24379461-24379480 | MS.gene55005:CDS | 60.0% | |
| GGCCATGAGGAGAGCTGAGA+AGG | - | chr7.2:24379131-24379150 | MS.gene55005:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 24378661 | 24379980 | 24378661 | ID=MS.gene55005 |
| chr7.2 | mRNA | 24378661 | 24379980 | 24378661 | ID=MS.gene55005.t1;Parent=MS.gene55005 |
| chr7.2 | exon | 24378661 | 24379980 | 24378661 | ID=MS.gene55005.t1.exon1;Parent=MS.gene55005.t1 |
| chr7.2 | CDS | 24378661 | 24379980 | 24378661 | ID=cds.MS.gene55005.t1;Parent=MS.gene55005.t1 |
| Gene Sequence |
| Protein sequence |
