AlfalfaGEDB | MS.gene55199

M. sativa cultivar XinJiangDaYe / MS.gene55199

KEGG: -
GO: -
PFAM: PF09133.13

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55199.t1	XP_003613728.2	83.2	309	36	2	1	309	54	346	7.10E-110	407.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55199.t1	Q8RWD7	43.0	79	43	1	1	79	95	171	2.5e-10	67.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55199.t1	G7KDV8	83.2	309	36	2	1	309	54	346	5.1e-110	407.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene55199.t1	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene55199	0.839386	1.63E-57	-1.69E-46
MS.gene050201	MS.gene55199	0.803551	3.30E-49	-1.69E-46
MS.gene051594	MS.gene55199	0.811535	6.67E-51	-1.69E-46
MS.gene051719	MS.gene55199	0.801038	1.09E-48	-1.69E-46
MS.gene051744	MS.gene55199	0.814003	1.92E-51	-1.69E-46
MS.gene052519	MS.gene55199	0.801242	9.88E-49	-1.69E-46
MS.gene052582	MS.gene55199	0.813003	3.19E-51	-1.69E-46
MS.gene052584	MS.gene55199	0.82594	3.56E-54	-1.69E-46
MS.gene053226	MS.gene55199	0.812438	4.24E-51	-1.69E-46
MS.gene05423	MS.gene55199	0.803493	3.40E-49	-1.69E-46

Showing 1 to 10 of 22 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55199.t1	MTR_7g039520	83.495	309	35	2	1	309	54	346	0.0	512
MS.gene55199.t1	MTR_5g040080	83.495	309	35	2	1	309	54	346	3.76e-178	496
MS.gene55199.t1	MTR_2g014410	73.962	265	38	3	43	307	42	275	3.33e-125	361
MS.gene55199.t1	MTR_1g069015	38.272	81	47	2	1	79	59	138	1.49e-11	65.1

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55199.t1	AT1G58210	44.304	79	42	1	1	79	95	171	1.17e-14	73.2

Showing 1 to 1 of 1 entries

Previous1Next

Find 58 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTATTCAGCTCATGGTT+CGG	0.408856	5.2:+30184692	MS.gene55199:CDS
AACAGTCGATGAGACTTCAC+AGG	0.601831	5.2:+30184782	MS.gene55199:CDS
AAGAAGATTGTAGAGGATAC+TGG	0.442437	5.2:+30185287	MS.gene55199:CDS
AAGTCACACGATGCTTAAAA+AGG	0.345125	5.2:+30185355	MS.gene55199:CDS
AATGTTGTAGAGACTCAAGA+TGG	0.656225	5.2:+30183629	MS.gene55199:CDS
AATTATTCAGCTCATGGTTC+GGG	0.340243	5.2:+30184693	MS.gene55199:CDS
ACAACAATATTGCGAGTGTA+AGG	0.490252	5.2:+30184817	MS.gene55199:CDS
ACACTATTTGGCTCATGGGT+AGG	0.583997	5.2:-30185155	None:intergenic
ACAGGTATGTCGCCGTTTCT+CGG	0.307703	5.2:+30184647	MS.gene55199:intron
ACCAGCTGATGAAACTTCGC+AGG	0.571677	5.2:+30184926	MS.gene55199:CDS

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTATTCAGCTCATGGTT+CGG	+	chr5.2:30184692-30184711	MS.gene55199:CDS	30.0%
AACATGTCAACATTAGTGTA+TGG	+	chr5.2:30184045-30184064	MS.gene55199:intron	30.0%
AGTGAAGATCTAACACTATT+TGG	-	chr5.2:30185170-30185189	None:intergenic	30.0%
GAAAATGTGGATAAAGTTAC+TGG	+	chr5.2:30184726-30184745	MS.gene55199:CDS	30.0%
GTGATTTCTAATGGTGAAAA+TGG	+	chr5.2:30185071-30185090	MS.gene55199:CDS	30.0%
TGAAGTAAACACACACAAAA+AGG	-	chr5.2:30184257-30184276	None:intergenic	30.0%
TGGAAAAATTATTCAGCTCA+TGG	+	chr5.2:30184687-30184706	MS.gene55199:CDS	30.0%
TGTGTTTACTTCATGTTCAT+GGG	+	chr5.2:30184264-30184283	MS.gene55199:intron	30.0%
TTATAAATCACACCAACTTG+TGG	-	chr5.2:30184852-30184871	None:intergenic	30.0%
AAGAAGATTGTAGAGGATAC+TGG	+	chr5.2:30185287-30185306	MS.gene55199:CDS	35.0%

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	30183590	30185451	30183590	ID=MS.gene55199
chr5.2	mRNA	30183590	30185451	30183590	ID=MS.gene55199.t1;Parent=MS.gene55199
chr5.2	exon	30183590	30183718	30183590	ID=MS.gene55199.t1.exon1;Parent=MS.gene55199.t1
chr5.2	CDS	30183590	30183718	30183590	ID=cds.MS.gene55199.t1;Parent=MS.gene55199.t1
chr5.2	exon	30184651	30185451	30184651	ID=MS.gene55199.t1.exon2;Parent=MS.gene55199.t1
chr5.2	CDS	30184651	30185451	30184651	ID=cds.MS.gene55199.t1;Parent=MS.gene55199.t1

Gene Sequence

>MS.gene55199

ATGTTTTTTTCTTCAGTGATTGTAGAGAGACATGAACCCAATGTTGTAGAGACTCAAGATGGCATCACTGTAATCTTCCGCGGTTTGATTAACGCCTCACGTACGTCTCAAAATGGTTTTTCTTCTGAGGTGGGTTACCCTTTTTCTTTTTCATTCCTCTTGACCCTTATCTAGGCTCGTGGTATTTTACTAGCTGCTAATAGAGTTGATTTTGAATATAATTAGTGTGTTTGGTTATGCTGTGAGTTCTGTGACCAAAATTGATTTTAAATAAATTCATTTTTTATTGAAATTGAGTTGTATGTAAAACGTTGTGTTTTGATACATTCGAGTAAAACTGAATTGAATAATAATTTGAGAGTACAAATCAAATTTGGATGCATAAGCTACAAATTTCAGCTTCGAGTTAGAATTCATTTTTGTGGCAAAAAGTGATTCTACATAAGAATATTTTAAACATGTCAACATTAGTGTATGGAATCACTTTTAGGCCTCTCTTAAAAGTGAAATCTAAACATACACTTAAATTTTAGAATTAGTTTTGGTTTAATTGAGTTTGAAGTTAATTTCATTTATGTTCACATGTTTTTACTTCCAAAGAAAGTTTGATACAAAAAGTAGTGTTAAATTTTTAATTCTTCACAAAATTTGCTGTTTATCAATACCTTTTTGTGTGTGTTTACTTCATGTTCATGGGTCATCCACAGTGGGTTGAACTTGAACCTGAAGCTCCAAGTGATAGTTTCAAAGTTCAAACACTCTGACTCCACACAATCCATAATTGAGGTTTATCAATCATTCAGTTTTATTTGGTAGAAATCAAACTCCTATATTTTTGCTAGCTTTGTTAGGTGAAACTAGACACACGCACAGACATGAGATTTAGAGTCTGGCAATTTTGTCTGACAGGAACCCAAAATCTATACTTTTTGACAAAATCAATTCTGTTAGTGAAACAAAATACTCATAATCTTCAATGGATTGAATAAATACCCTTGTGTGTGATTGTGGCTGTTATTGGCGCATTTAATTTTCTGGAAATATTCAATGTCTTTCTACAGGTATGTCGCCGTTTCTCGGTTGGATTTCCACACAATTGGAAAAATTATTCAGCTCATGGTTCGGGAAATGAATGGGAAAATGTGGATAAAGTTACTGGTTTTGACGACTCAAATACTTCTTCCCACAAAAAAACAGTCGATGAGACTTCACAGGAAGCTGAAGGTAACAACAATATTGCGAGTGTAAGGTTGTCTCAACCACAAGTTGGTGTGATTTATAATGGTGAAAATGGATTCTCAAATGTTGACAACTCAAATGTTTCATCCCTCAAAAAACCAGCTGATGAAACTTCGCAGGAAGATATGGAACCTGAAGGTAATGACAACATTCCGGGTCTTAAGTTGTCTCAACCGGAAGATATGGAACCGGAAGGCAATGACAACATTGCGAGTTTTGATTTGTCTCAACCGCAGGTTGACGTGATTTCTAATGGTGAAAATGGAGTCTCAAGTGTTGCTGCGGCTGAAAATAGTCAATCTTTGATGAGTGTATTTGAATTTGATCCTACCCATGAGCCAAATAGTGTTAGATCTTCACTTTACGCAAAGAAATTGAAGTTTGACGAATTATCAAGTGACCGCAAGGATAAGAAACGTACCAAGAAGAAGAGTGTAGAGGATAAGAAACGTACCAAGAAGAAGATTGTAGAGGATACTGGTAACTTGTGTAGTAGTAGGGTGCTGACAAGAAGCATTGCCAAGAAAAGTCACACGATGCTTAAAAAGGATGGGAAAACTGCCGTGAAATGTTTCACTTCTCCTGTTAGAAGATCTACCAGGCTACTAAATTATAAAAAATGA

Protein sequence

>MS.gene55199.t1

MFFSSVIVERHEPNVVETQDGITVIFRGLINASRTSQNGFSSEVCRRFSVGFPHNWKNYSAHGSGNEWENVDKVTGFDDSNTSSHKKTVDETSQEAEGNNNIASVRLSQPQVGVIYNGENGFSNVDNSNVSSLKKPADETSQEDMEPEGNDNIPGLKLSQPEDMEPEGNDNIASFDLSQPQVDVISNGENGVSSVAAAENSQSLMSVFEFDPTHEPNSVRSSLYAKKLKFDELSSDRKDKKRTKKKSVEDKKRTKKKIVEDTGNLCSSRVLTRSIAKKSHTMLKKDGKTAVKCFTSPVRRSTRLLNYKK