Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55199.t1 | XP_003613728.2 | 83.2 | 309 | 36 | 2 | 1 | 309 | 54 | 346 | 7.10E-110 | 407.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55199.t1 | Q8RWD7 | 43.0 | 79 | 43 | 1 | 1 | 79 | 95 | 171 | 2.5e-10 | 67.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55199.t1 | G7KDV8 | 83.2 | 309 | 36 | 2 | 1 | 309 | 54 | 346 | 5.1e-110 | 407.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene55199.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene55199 | 0.839386 | 1.63E-57 | -1.69E-46 |
| MS.gene050201 | MS.gene55199 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene55199 | 0.811535 | 6.67E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene55199 | 0.801038 | 1.09E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene55199 | 0.814003 | 1.92E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene55199 | 0.801242 | 9.88E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene55199 | 0.813003 | 3.19E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene55199 | 0.82594 | 3.56E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene55199 | 0.812438 | 4.24E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene55199 | 0.803493 | 3.40E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene55199 | -0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene55199 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene55199 | 0.805485 | 1.30E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene55199 | 0.819176 | 1.33E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene55199 | 0.815277 | 1.00E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene55199 | 0.814389 | 1.58E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene55199 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene55199 | 0.801553 | 8.53E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene55199 | 0.808253 | 3.39E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene55199 | 0.827226 | 1.76E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene55199 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene55199 | -0.806727 | 7.15E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55199.t1 | MTR_7g039520 | 83.495 | 309 | 35 | 2 | 1 | 309 | 54 | 346 | 0.0 | 512 |
| MS.gene55199.t1 | MTR_5g040080 | 83.495 | 309 | 35 | 2 | 1 | 309 | 54 | 346 | 3.76e-178 | 496 |
| MS.gene55199.t1 | MTR_2g014410 | 73.962 | 265 | 38 | 3 | 43 | 307 | 42 | 275 | 3.33e-125 | 361 |
| MS.gene55199.t1 | MTR_1g069015 | 38.272 | 81 | 47 | 2 | 1 | 79 | 59 | 138 | 1.49e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55199.t1 | AT1G58210 | 44.304 | 79 | 42 | 1 | 1 | 79 | 95 | 171 | 1.17e-14 | 73.2 |
Find 58 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTCTACACTCTTCTTCT+TGG | 0.200839 | 5.2:-30185249 | None:intergenic |
| GTGATTTATAATGGTGAAAA+TGG | 0.244926 | 5.2:+30184861 | MS.gene55199:CDS |
| ATCCTCTACAATCTTCTTCT+TGG | 0.277613 | 5.2:-30185282 | None:intergenic |
| AGTGAAGATCTAACACTATT+TGG | 0.293956 | 5.2:-30185167 | None:intergenic |
| GTGATTTCTAATGGTGAAAA+TGG | 0.304848 | 5.2:+30185071 | MS.gene55199:CDS |
| ACAGGTATGTCGCCGTTTCT+CGG | 0.307703 | 5.2:+30184647 | MS.gene55199:intron |
| CGGTTGGATTTCCACACAAT+TGG | 0.311637 | 5.2:+30184667 | MS.gene55199:CDS |
| GAAAATGTGGATAAAGTTAC+TGG | 0.316089 | 5.2:+30184726 | MS.gene55199:CDS |
| AATTATTCAGCTCATGGTTC+GGG | 0.340243 | 5.2:+30184693 | MS.gene55199:CDS |
| AAGTCACACGATGCTTAAAA+AGG | 0.345125 | 5.2:+30185355 | MS.gene55199:CDS |
| GCCTCACGTACGTCTCAAAA+TGG | 0.354055 | 5.2:+30183683 | MS.gene55199:CDS |
| CAAGTTGGTGTGATTTATAA+TGG | 0.397054 | 5.2:+30184852 | MS.gene55199:CDS |
| TCCTGCGAAGTTTCATCAGC+TGG | 0.402006 | 5.2:-30184927 | None:intergenic |
| TGAAACTTCGCAGGAAGATA+TGG | 0.405006 | 5.2:+30184935 | MS.gene55199:CDS |
| TGAAGGTAATGACAACATTC+CGG | 0.406283 | 5.2:+30184962 | MS.gene55199:CDS |
| AAATTATTCAGCTCATGGTT+CGG | 0.408856 | 5.2:+30184692 | MS.gene55199:CDS |
| GAAGGTAATGACAACATTCC+GGG | 0.414777 | 5.2:+30184963 | MS.gene55199:CDS |
| GCAATGTTGTCATTGCCTTC+CGG | 0.415008 | 5.2:-30185017 | None:intergenic |
| CTGGTAACTTGTGTAGTAGT+AGG | 0.423638 | 5.2:+30185306 | MS.gene55199:CDS |
| CAGGTTGACGTGATTTCTAA+TGG | 0.433158 | 5.2:+30185062 | MS.gene55199:CDS |
| GTTGTCTCAACCGGAAGATA+TGG | 0.435950 | 5.2:+30184992 | MS.gene55199:CDS |
| AAGAAGATTGTAGAGGATAC+TGG | 0.442437 | 5.2:+30185287 | MS.gene55199:CDS |
| CCTTCCGGTTCCATATCTTC+CGG | 0.446681 | 5.2:-30185002 | None:intergenic |
| GGGTCTTAAGTTGTCTCAAC+CGG | 0.446838 | 5.2:+30184983 | MS.gene55199:CDS |
| ATCTTGAGTCTCTACAACAT+TGG | 0.448912 | 5.2:-30183627 | None:intergenic |
| GGAATGTTGTCATTACCTTC+AGG | 0.449864 | 5.2:-30184960 | None:intergenic |
| TCTTGAGTCTCTACAACATT+GGG | 0.460912 | 5.2:-30183626 | None:intergenic |
| AGCCTGGTAGATCTTCTAAC+AGG | 0.463228 | 5.2:-30185410 | None:intergenic |
| GTATGTCGCCGTTTCTCGGT+TGG | 0.465222 | 5.2:+30184651 | MS.gene55199:CDS |
| ACAACAATATTGCGAGTGTA+AGG | 0.490252 | 5.2:+30184817 | MS.gene55199:CDS |
| TCATGGTTCGGGAAATGAAT+GGG | 0.496759 | 5.2:+30184704 | MS.gene55199:CDS |
| ATCTAACACTATTTGGCTCA+TGG | 0.496988 | 5.2:-30185160 | None:intergenic |
| GTGGAAATCCAACCGAGAAA+CGG | 0.509162 | 5.2:-30184659 | None:intergenic |
| CTCATGGTTCGGGAAATGAA+TGG | 0.521512 | 5.2:+30184703 | MS.gene55199:CDS |
| TCTAACACTATTTGGCTCAT+GGG | 0.544732 | 5.2:-30185159 | None:intergenic |
| TGGTAACTTGTGTAGTAGTA+GGG | 0.548652 | 5.2:+30185307 | MS.gene55199:CDS |
| TCAACCGGAAGATATGGAAC+CGG | 0.553131 | 5.2:+30184998 | MS.gene55199:CDS |
| GGGAAATGAATGGGAAAATG+TGG | 0.555111 | 5.2:+30184713 | MS.gene55199:CDS |
| AGGAGAAGTGAAACATTTCA+CGG | 0.569635 | 5.2:-30185390 | None:intergenic |
| ACCAGCTGATGAAACTTCGC+AGG | 0.571677 | 5.2:+30184926 | MS.gene55199:CDS |
| CTCCTGTTAGAAGATCTACC+AGG | 0.582686 | 5.2:+30185408 | MS.gene55199:CDS |
| ACACTATTTGGCTCATGGGT+AGG | 0.583997 | 5.2:-30185155 | None:intergenic |
| TTATAAATCACACCAACTTG+TGG | 0.584975 | 5.2:-30184849 | None:intergenic |
| CGAATTATCAAGTGACCGCA+AGG | 0.593011 | 5.2:+30185214 | MS.gene55199:CDS |
| AACAGTCGATGAGACTTCAC+AGG | 0.601831 | 5.2:+30184782 | MS.gene55199:CDS |
| TGGTACGTTTCTTATCCTTG+CGG | 0.610799 | 5.2:-30185229 | None:intergenic |
| GGCATCACTGTAATCTTCCG+CGG | 0.614423 | 5.2:+30183650 | MS.gene55199:CDS |
| GGTTGAGACAACTTAAGACC+CGG | 0.620339 | 5.2:-30184981 | None:intergenic |
| CAGGAAGATATGGAACCTGA+AGG | 0.637635 | 5.2:+30184945 | MS.gene55199:CDS |
| GAGACTTCACAGGAAGCTGA+AGG | 0.645447 | 5.2:+30184792 | MS.gene55199:CDS |
| TACCAAGAAGAAGAGTGTAG+AGG | 0.653381 | 5.2:+30185247 | MS.gene55199:CDS |
| AATGTTGTAGAGACTCAAGA+TGG | 0.656225 | 5.2:+30183629 | MS.gene55199:CDS |
| CCGGAAGATATGGAACCGGA+AGG | 0.657836 | 5.2:+30185002 | MS.gene55199:CDS |
| TGGAGTCTCAAGTGTTGCTG+CGG | 0.662528 | 5.2:+30185091 | MS.gene55199:CDS |
| AGGTTGTCTCAACCACAAGT+TGG | 0.664848 | 5.2:+30184837 | MS.gene55199:CDS |
| TACCAAGAAGAAGATTGTAG+AGG | 0.672640 | 5.2:+30185280 | MS.gene55199:CDS |
| TTAGAAATCACGTCAACCTG+CGG | 0.710726 | 5.2:-30185059 | None:intergenic |
| GTGAGGCGTTAATCAAACCG+CGG | 0.757884 | 5.2:-30183667 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTAGAATTAGTTT+TGG | + | chr5.2:30184112-30184131 | MS.gene55199:intron | 10.0% |
| !! | AAAATACTCATAATCTTCAA+TGG | + | chr5.2:30184547-30184566 | MS.gene55199:intron | 20.0% |
| !! | TTGAATATAATTAGTGTGTT+TGG | + | chr5.2:30183801-30183820 | MS.gene55199:intron | 20.0% |
| !!! | ATCAATCATTCAGTTTTATT+TGG | + | chr5.2:30184380-30184399 | MS.gene55199:intron | 20.0% |
| !!! | TGTCAAAAAGTATAGATTTT+GGG | - | chr5.2:30184505-30184524 | None:intergenic | 20.0% |
| !!! | TTGTCAAAAAGTATAGATTT+TGG | - | chr5.2:30184506-30184525 | None:intergenic | 20.0% |
| !!! | TTTTTGTATCAAACTTTCTT+TGG | - | chr5.2:30184187-30184206 | None:intergenic | 20.0% |
| !!! | TTTTTTATAATTTAGTAGCC+TGG | - | chr5.2:30185429-30185448 | None:intergenic | 20.0% |
| ! | AACAAAGCTAGCAAAAATAT+AGG | - | chr5.2:30184419-30184438 | None:intergenic | 25.0% |
| ! | AAGAGGAATGAAAAAGAAAA+AGG | - | chr5.2:30183731-30183750 | None:intergenic | 25.0% |
| ! | AATATTCAATGTCTTTCTAC+AGG | + | chr5.2:30184629-30184648 | MS.gene55199:intron | 25.0% |
| ! | AGAGGAATGAAAAAGAAAAA+GGG | - | chr5.2:30183730-30183749 | None:intergenic | 25.0% |
| ! | GTGATTTATAATGGTGAAAA+TGG | + | chr5.2:30184861-30184880 | MS.gene55199:CDS | 25.0% |
| ! | TGATTGATAAACCTCAATTA+TGG | - | chr5.2:30184368-30184387 | None:intergenic | 25.0% |
| !! | GAATAATTTTTCCAATTGTG+TGG | - | chr5.2:30184681-30184700 | None:intergenic | 25.0% |
| !! | TTGAGAGTACAAATCAAATT+TGG | + | chr5.2:30183944-30183963 | MS.gene55199:intron | 25.0% |
| !!! | ATATTTTTGCTAGCTTTGTT+AGG | + | chr5.2:30184419-30184438 | MS.gene55199:intron | 25.0% |
| !!! | TTAGATTTCACTTTTAAGAG+AGG | - | chr5.2:30184084-30184103 | None:intergenic | 25.0% |
| AAATTATTCAGCTCATGGTT+CGG | + | chr5.2:30184692-30184711 | MS.gene55199:CDS | 30.0% | |
| AACATGTCAACATTAGTGTA+TGG | + | chr5.2:30184045-30184064 | MS.gene55199:intron | 30.0% | |
| AGTGAAGATCTAACACTATT+TGG | - | chr5.2:30185170-30185189 | None:intergenic | 30.0% | |
| GAAAATGTGGATAAAGTTAC+TGG | + | chr5.2:30184726-30184745 | MS.gene55199:CDS | 30.0% | |
| GTGATTTCTAATGGTGAAAA+TGG | + | chr5.2:30185071-30185090 | MS.gene55199:CDS | 30.0% | |
| TGAAGTAAACACACACAAAA+AGG | - | chr5.2:30184257-30184276 | None:intergenic | 30.0% | |
| TGGAAAAATTATTCAGCTCA+TGG | + | chr5.2:30184687-30184706 | MS.gene55199:CDS | 30.0% | |
| TGTGTTTACTTCATGTTCAT+GGG | + | chr5.2:30184264-30184283 | MS.gene55199:intron | 30.0% | |
| TTATAAATCACACCAACTTG+TGG | - | chr5.2:30184852-30184871 | None:intergenic | 30.0% | |
| ! | TCAAAATGGTTTTTCTTCTG+AGG | + | chr5.2:30183697-30183716 | MS.gene55199:CDS | 30.0% |
| !! | CAAGTTGGTGTGATTTATAA+TGG | + | chr5.2:30184852-30184871 | MS.gene55199:CDS | 30.0% |
| !! | CGAGTTAGAATTCATTTTTG+TGG | + | chr5.2:30183992-30184011 | MS.gene55199:intron | 30.0% |
| !! | TAGTGTATGGAATCACTTTT+AGG | + | chr5.2:30184058-30184077 | MS.gene55199:intron | 30.0% |
| !! | TATTGGCGCATTTAATTTTC+TGG | + | chr5.2:30184605-30184624 | MS.gene55199:intron | 30.0% |
| !! | TGAACTTTGAAACTATCACT+TGG | - | chr5.2:30184324-30184343 | None:intergenic | 30.0% |
| AAGAAGATTGTAGAGGATAC+TGG | + | chr5.2:30185287-30185306 | MS.gene55199:CDS | 35.0% | |
| AAGTCACACGATGCTTAAAA+AGG | + | chr5.2:30185355-30185374 | MS.gene55199:CDS | 35.0% | |
| AATGTTGTAGAGACTCAAGA+TGG | + | chr5.2:30183629-30183648 | MS.gene55199:CDS | 35.0% | |
| AATTATTCAGCTCATGGTTC+GGG | + | chr5.2:30184693-30184712 | MS.gene55199:CDS | 35.0% | |
| ACAACAATATTGCGAGTGTA+AGG | + | chr5.2:30184817-30184836 | MS.gene55199:CDS | 35.0% | |
| ACACGATGCTTAAAAAGGAT+GGG | + | chr5.2:30185360-30185379 | MS.gene55199:CDS | 35.0% | |
| AGGAGAAGTGAAACATTTCA+CGG | - | chr5.2:30185393-30185412 | None:intergenic | 35.0% | |
| ATCCTCTACAATCTTCTTCT+TGG | - | chr5.2:30185285-30185304 | None:intergenic | 35.0% | |
| ATCTTGAGTCTCTACAACAT+TGG | - | chr5.2:30183630-30183649 | None:intergenic | 35.0% | |
| GTGTGTTTACTTCATGTTCA+TGG | + | chr5.2:30184263-30184282 | MS.gene55199:intron | 35.0% | |
| TACCAAGAAGAAGATTGTAG+AGG | + | chr5.2:30185280-30185299 | MS.gene55199:CDS | 35.0% | |
| TCTTGAGTCTCTACAACATT+GGG | - | chr5.2:30183629-30183648 | None:intergenic | 35.0% | |
| TGAAGGTAATGACAACATTC+CGG | + | chr5.2:30184962-30184981 | MS.gene55199:CDS | 35.0% | |
| ! | AACCTCAATTATGGATTGTG+TGG | - | chr5.2:30184359-30184378 | None:intergenic | 35.0% |
| ! | ATCTAACACTATTTGGCTCA+TGG | - | chr5.2:30185163-30185182 | None:intergenic | 35.0% |
| ! | TCTAACACTATTTGGCTCAT+GGG | - | chr5.2:30185162-30185181 | None:intergenic | 35.0% |
| ! | TGGTAACTTGTGTAGTAGTA+GGG | + | chr5.2:30185307-30185326 | MS.gene55199:CDS | 35.0% |
| !! | AAATGGTTTTTCTTCTGAGG+TGG | + | chr5.2:30183700-30183719 | MS.gene55199:intron | 35.0% |
| !!! | AATGGTTTTTCTTCTGAGGT+GGG | + | chr5.2:30183701-30183720 | MS.gene55199:intron | 35.0% |
| !!! | CTCATCGACTGTTTTTTTGT+GGG | - | chr5.2:30184775-30184794 | None:intergenic | 35.0% |
| !!! | TCTCATCGACTGTTTTTTTG+TGG | - | chr5.2:30184776-30184795 | None:intergenic | 35.0% |
| !!! | TTCATCAGCTGGTTTTTTGA+GGG | - | chr5.2:30184919-30184938 | None:intergenic | 35.0% |
| !!! | TTTCATCAGCTGGTTTTTTG+AGG | - | chr5.2:30184920-30184939 | None:intergenic | 35.0% |
| AAACTATCACTTGGAGCTTC+AGG | - | chr5.2:30184315-30184334 | None:intergenic | 40.0% | |
| AAATACCACGAGCCTAGATA+AGG | - | chr5.2:30183757-30183776 | None:intergenic | 40.0% | |
| AATACCACGAGCCTAGATAA+GGG | - | chr5.2:30183756-30183775 | None:intergenic | 40.0% | |
| AATACCCTTGTGTGTGATTG+TGG | + | chr5.2:30184578-30184597 | MS.gene55199:intron | 40.0% | |
| ATCCTCTACACTCTTCTTCT+TGG | - | chr5.2:30185252-30185271 | None:intergenic | 40.0% | |
| ATTCCTCTTGACCCTTATCT+AGG | + | chr5.2:30183742-30183761 | MS.gene55199:intron | 40.0% | |
| CACACGATGCTTAAAAAGGA+TGG | + | chr5.2:30185359-30185378 | MS.gene55199:CDS | 40.0% | |
| CTCCACACAATCCATAATTG+AGG | + | chr5.2:30184354-30184373 | MS.gene55199:intron | 40.0% | |
| GAAGGTAATGACAACATTCC+GGG | + | chr5.2:30184963-30184982 | MS.gene55199:CDS | 40.0% | |
| GGAATGTTGTCATTACCTTC+AGG | - | chr5.2:30184963-30184982 | None:intergenic | 40.0% | |
| GGGAAATGAATGGGAAAATG+TGG | + | chr5.2:30184713-30184732 | MS.gene55199:CDS | 40.0% | |
| TGAAACTTCGCAGGAAGATA+TGG | + | chr5.2:30184935-30184954 | MS.gene55199:CDS | 40.0% | |
| TGGTACGTTTCTTATCCTTG+CGG | - | chr5.2:30185232-30185251 | None:intergenic | 40.0% | |
| TGTGTGATTGTGGCTGTTAT+TGG | + | chr5.2:30184588-30184607 | MS.gene55199:intron | 40.0% | |
| TTAGAAATCACGTCAACCTG+CGG | - | chr5.2:30185062-30185081 | None:intergenic | 40.0% | |
| ! | CAGACATGAGATTTAGAGTC+TGG | + | chr5.2:30184460-30184479 | MS.gene55199:intron | 40.0% |
| ! | CAGGTTGACGTGATTTCTAA+TGG | + | chr5.2:30185062-30185081 | MS.gene55199:CDS | 40.0% |
| ! | CTGGTAACTTGTGTAGTAGT+AGG | + | chr5.2:30185306-30185325 | MS.gene55199:CDS | 40.0% |
| ! | TACCAAGAAGAAGAGTGTAG+AGG | + | chr5.2:30185247-30185266 | MS.gene55199:CDS | 40.0% |
| ! | TCATGGTTCGGGAAATGAAT+GGG | + | chr5.2:30184704-30184723 | MS.gene55199:CDS | 40.0% |
| !! | AAGCATCGTGTGACTTTTCT+TGG | - | chr5.2:30185351-30185370 | None:intergenic | 40.0% |
| !!! | TTTTGATTTGTCTCAACCGC+AGG | + | chr5.2:30185043-30185062 | MS.gene55199:CDS | 40.0% |
| AACAGCCACAATCACACACA+AGG | - | chr5.2:30184586-30184605 | None:intergenic | 45.0% | |
| AACAGTCGATGAGACTTCAC+AGG | + | chr5.2:30184782-30184801 | MS.gene55199:CDS | 45.0% | |
| ACAGCCACAATCACACACAA+GGG | - | chr5.2:30184585-30184604 | None:intergenic | 45.0% | |
| AGCCTGGTAGATCTTCTAAC+AGG | - | chr5.2:30185413-30185432 | None:intergenic | 45.0% | |
| AGGTTGTCTCAACCACAAGT+TGG | + | chr5.2:30184837-30184856 | MS.gene55199:CDS | 45.0% | |
| CAGGAAGATATGGAACCTGA+AGG | + | chr5.2:30184945-30184964 | MS.gene55199:CDS | 45.0% | |
| CGAATTATCAAGTGACCGCA+AGG | + | chr5.2:30185214-30185233 | MS.gene55199:CDS | 45.0% | |
| CGGTTGGATTTCCACACAAT+TGG | + | chr5.2:30184667-30184686 | MS.gene55199:CDS | 45.0% | |
| CTCCTGTTAGAAGATCTACC+AGG | + | chr5.2:30185408-30185427 | MS.gene55199:CDS | 45.0% | |
| GCAATGTTGTCATTGCCTTC+CGG | - | chr5.2:30185020-30185039 | None:intergenic | 45.0% | |
| GGTTGAGACAACTTAAGACC+CGG | - | chr5.2:30184984-30185003 | None:intergenic | 45.0% | |
| GTGGAAATCCAACCGAGAAA+CGG | - | chr5.2:30184662-30184681 | None:intergenic | 45.0% | |
| GTTGTCTCAACCGGAAGATA+TGG | + | chr5.2:30184992-30185011 | MS.gene55199:CDS | 45.0% | |
| TCAACCGGAAGATATGGAAC+CGG | + | chr5.2:30184998-30185017 | MS.gene55199:CDS | 45.0% | |
| ! | ACACTATTTGGCTCATGGGT+AGG | - | chr5.2:30185158-30185177 | None:intergenic | 45.0% |
| ! | CTCATGGTTCGGGAAATGAA+TGG | + | chr5.2:30184703-30184722 | MS.gene55199:CDS | 45.0% |
| ! | GGGTCTTAAGTTGTCTCAAC+CGG | + | chr5.2:30184983-30185002 | MS.gene55199:CDS | 45.0% |
| ! | GTCTGGCAATTTTGTCTGAC+AGG | + | chr5.2:30184477-30184496 | MS.gene55199:intron | 45.0% |
| !!! | ACCATTTTGAGACGTACGTG+AGG | - | chr5.2:30183687-30183706 | None:intergenic | 45.0% |
| !!! | AATTTATTTAAAATCAATTT+TGG | - | chr5.2:30183847-30183866 | None:intergenic | 5.0% |
| ACAGGTATGTCGCCGTTTCT+CGG | + | chr5.2:30184647-30184666 | MS.gene55199:intron | 50.0% | |
| ACCAGCTGATGAAACTTCGC+AGG | + | chr5.2:30184926-30184945 | MS.gene55199:CDS | 50.0% | |
| CCTTCCGGTTCCATATCTTC+CGG | - | chr5.2:30185005-30185024 | None:intergenic | 50.0% | |
| GAGACTTCACAGGAAGCTGA+AGG | + | chr5.2:30184792-30184811 | MS.gene55199:CDS | 50.0% | |
| GAGCCTAGATAAGGGTCAAG+AGG | - | chr5.2:30183748-30183767 | None:intergenic | 50.0% | |
| GCCTCACGTACGTCTCAAAA+TGG | + | chr5.2:30183683-30183702 | MS.gene55199:CDS | 50.0% | |
| GGCATCACTGTAATCTTCCG+CGG | + | chr5.2:30183650-30183669 | MS.gene55199:CDS | 50.0% | |
| GTTCATGGGTCATCCACAGT+GGG | + | chr5.2:30184278-30184297 | MS.gene55199:intron | 50.0% | |
| TCCTGCGAAGTTTCATCAGC+TGG | - | chr5.2:30184930-30184949 | None:intergenic | 50.0% | |
| TGTTCATGGGTCATCCACAG+TGG | + | chr5.2:30184277-30184296 | MS.gene55199:intron | 50.0% | |
| TTGACCCTTATCTAGGCTCG+TGG | + | chr5.2:30183749-30183768 | MS.gene55199:intron | 50.0% | |
| ! | GGTTCAAGTTCAACCCACTG+TGG | - | chr5.2:30184294-30184313 | None:intergenic | 50.0% |
| ! | GTGAGGCGTTAATCAAACCG+CGG | - | chr5.2:30183670-30183689 | None:intergenic | 50.0% |
| ! | TGGAGTCTCAAGTGTTGCTG+CGG | + | chr5.2:30185091-30185110 | MS.gene55199:CDS | 50.0% |
| CCGGAAGATATGGAACCGGA+AGG | + | chr5.2:30185002-30185021 | MS.gene55199:CDS | 55.0% | |
| GTATGTCGCCGTTTCTCGGT+TGG | + | chr5.2:30184651-30184670 | MS.gene55199:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30183590 | 30185451 | 30183590 | ID=MS.gene55199 |
| chr5.2 | mRNA | 30183590 | 30185451 | 30183590 | ID=MS.gene55199.t1;Parent=MS.gene55199 |
| chr5.2 | exon | 30183590 | 30183718 | 30183590 | ID=MS.gene55199.t1.exon1;Parent=MS.gene55199.t1 |
| chr5.2 | CDS | 30183590 | 30183718 | 30183590 | ID=cds.MS.gene55199.t1;Parent=MS.gene55199.t1 |
| chr5.2 | exon | 30184651 | 30185451 | 30184651 | ID=MS.gene55199.t1.exon2;Parent=MS.gene55199.t1 |
| chr5.2 | CDS | 30184651 | 30185451 | 30184651 | ID=cds.MS.gene55199.t1;Parent=MS.gene55199.t1 |
| Gene Sequence |
| Protein sequence |
