AlfalfaGEDB | MS.gene42899

M. sativa cultivar XinJiangDaYe / MS.gene42899

KEGG: K14270
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363
PFAM: PF00155.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42899.t1	XP_013452470.1	98.8	328	4	0	1	328	200	527	1.70E-186	661.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42899.t1	Q8GYY0	63.7	328	119	0	1	328	165	492	6.9e-128	458.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42899.t1	A0A072UBT9	98.8	328	4	0	1	328	200	527	1.2e-186	661.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050625	MS.gene42899	0.809744	1.63E-50	-1.69E-46
MS.gene052982	MS.gene42899	0.828944	6.78E-55	-1.69E-46
MS.gene053318	MS.gene42899	0.816923	4.31E-52	-1.69E-46
MS.gene055892	MS.gene42899	0.967925	5.92E-128	-1.69E-46
MS.gene055893	MS.gene42899	0.989419	4.84E-178	-1.69E-46
MS.gene055894	MS.gene42899	0.938326	8.10E-99	-1.69E-46
MS.gene055895	MS.gene42899	0.895452	9.46E-76	-1.69E-46
MS.gene059946	MS.gene42899	0.805332	1.40E-49	-1.69E-46
MS.gene060837	MS.gene42899	0.803268	3.78E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene89714	MS.gene42899	PPI
MS.gene06009	MS.gene42899	PPI
MS.gene55742	MS.gene42899	PPI
MS.gene42899	MS.gene048867	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42899.t1	MTR_6g463260	98.780	328	4	0	1	328	200	527	0.0	681
MS.gene42899.t1	MTR_5g011400	60.671	328	129	0	1	328	167	494	2.02e-155	445
MS.gene42899.t1	MTR_8g101750	48.457	324	166	1	1	323	100	423	7.85e-124	362
MS.gene42899.t1	MTR_6g091760	48.765	324	165	1	1	323	108	431	1.06e-122	360
MS.gene42899.t1	MTR_4g097540	47.198	339	168	4	1	328	99	437	1.69e-121	357
MS.gene42899.t1	MTR_3g103550	47.748	333	168	2	1	328	98	429	2.45e-117	347
MS.gene42899.t1	MTR_5g015020	45.373	335	174	4	1	326	99	433	8.07e-117	346
MS.gene42899.t1	MTR_8g098930	44.377	329	180	1	1	326	107	435	4.33e-111	332
MS.gene42899.t1	MTR_8g101820	43.731	327	170	3	1	326	100	413	2.47e-107	320
MS.gene42899.t1	MTR_8g028600	42.331	326	188	0	1	326	106	431	5.06e-104	313
MS.gene42899.t1	MTR_7g079080	42.202	327	188	1	1	326	1	327	2.89e-102	305
MS.gene42899.t1	MTR_7g079080	42.202	327	188	1	1	326	106	432	1.01e-100	305
MS.gene42899.t1	MTR_5g033230	25.215	349	211	12	12	324	129	463	3.74e-20	91.3
MS.gene42899.t1	MTR_5g033230	26.429	280	164	9	12	262	129	395	6.11e-18	84.7
MS.gene42899.t1	MTR_8g023140	21.257	334	238	11	12	322	180	511	1.10e-14	75.1
MS.gene42899.t1	MTR_2g090615	29.670	182	102	5	10	184	105	267	1.08e-12	68.9
MS.gene42899.t1	MTR_7g106830	21.148	331	229	12	9	326	153	464	1.81e-12	68.2
MS.gene42899.t1	MTR_8g091280	21.429	294	212	8	9	294	155	437	2.47e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42899.t1	AT5G51690	63.720	328	119	0	1	328	42	369	3.97e-166	467
MS.gene42899.t1	AT5G51690	63.720	328	119	0	1	328	165	492	1.40e-163	466
MS.gene42899.t1	AT1G62960	57.879	330	137	2	1	328	223	552	3.36e-147	426
MS.gene42899.t1	AT4G37770	48.640	331	166	1	1	327	99	429	1.98e-122	360
MS.gene42899.t1	AT2G22810	47.590	332	169	2	1	327	99	430	2.86e-119	352
MS.gene42899.t1	AT3G49700	48.494	332	167	1	1	328	99	430	1.73e-117	347
MS.gene42899.t1	AT5G65800	46.687	332	173	1	1	328	99	430	2.39e-115	342
MS.gene42899.t1	AT4G26200	47.734	331	167	2	1	327	114	442	3.33e-115	341
MS.gene42899.t1	AT4G08040	44.985	329	180	1	1	328	97	425	4.47e-113	336
MS.gene42899.t1	AT4G11280	45.062	324	177	1	1	323	110	433	1.80e-110	330
MS.gene42899.t1	AT1G01480	42.121	330	187	2	1	326	1	330	1.14e-102	306
MS.gene42899.t1	AT3G61510	41.284	327	188	2	1	326	106	429	4.10e-101	306
MS.gene42899.t1	AT1G01480	42.121	330	187	2	1	326	107	436	6.48e-101	306
MS.gene42899.t1	AT1G70580	26.176	340	219	14	12	324	129	463	2.84e-20	91.7
MS.gene42899.t1	AT1G70580	26.176	340	219	14	12	324	129	463	2.84e-20	91.7
MS.gene42899.t1	AT1G70580	26.176	340	219	14	12	324	129	463	2.84e-20	91.7
MS.gene42899.t1	AT1G70580	26.176	340	219	14	12	324	129	463	2.84e-20	91.7
MS.gene42899.t1	AT1G23310	25.294	340	222	13	12	324	129	463	3.50e-20	91.3
MS.gene42899.t1	AT1G23310	32.168	143	94	3	12	152	129	270	8.10e-19	87.0
MS.gene42899.t1	AT1G72330	22.000	350	228	12	12	328	196	533	8.42e-19	87.4
MS.gene42899.t1	AT1G72330	28.402	169	108	5	12	178	196	353	5.31e-18	84.7
MS.gene42899.t1	AT1G72330	21.569	357	222	12	12	322	196	540	2.71e-17	83.2
MS.gene42899.t1	AT1G17290	21.512	344	225	11	12	322	199	530	1.01e-16	81.3
MS.gene42899.t1	AT5G36160	29.444	180	101	5	8	180	102	262	1.51e-13	71.2
MS.gene42899.t1	AT2G22250	20.896	335	227	12	9	327	108	420	7.45e-12	66.2
MS.gene42899.t1	AT2G22250	20.896	335	227	12	9	327	155	467	1.03e-11	65.9
MS.gene42899.t1	AT2G22250	20.896	335	227	12	9	327	155	467	1.03e-11	65.9
MS.gene42899.t1	AT2G24850	22.876	306	208	8	15	309	116	404	3.31e-11	64.3

Find 74 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAGACTGAAAAGCATTTC+TGG	0.240255	6.2:-64259449	None:intergenic
AGAAAGGAGAACTTGAATTA+TGG	0.243969	6.2:+64259927	MS.gene42899:CDS
TTCACACAACAAAACTGTTT+TGG	0.255365	6.2:+64259664	MS.gene42899:CDS
TCAAAAGACCTTTCGATTGC+TGG	0.288659	6.2:+64259620	MS.gene42899:CDS
AGCACACTTGATTCCTAGTT+TGG	0.291076	6.2:-64259843	None:intergenic
TTCCGATAAACGATTCATTC+AGG	0.315188	6.2:+64259757	MS.gene42899:CDS
GTCGATTACCCTGGATAATA+AGG	0.320746	6.2:-64258993	None:intergenic
AGAATTTGACCCGTCAAATA+TGG	0.338798	6.2:+64258887	MS.gene42899:CDS
TTCCTGAATGAATCGTTTAT+CGG	0.368687	6.2:-64259759	None:intergenic
GAAAGGAGAACTTGAATTAT+GGG	0.372458	6.2:+64259928	MS.gene42899:CDS
AACGATAGTATCTCAATTGC+AGG	0.378929	6.2:-64258930	None:intergenic
AGTTCTCCTTTCTCGCTATA+AGG	0.388101	6.2:-64259917	None:intergenic
GCACCCGTCTTATTCTATTT+CGG	0.391124	6.2:-64259796	None:intergenic
AAATCCCTCTAGTTATTGAT+AGG	0.392176	6.2:+64260056	MS.gene42899:CDS
CTCTAGTTATTGATAGGATT+CGG	0.409149	6.2:+64260062	MS.gene42899:CDS
CTTGACTAAATGCTTGTTCA+AGG	0.411999	6.2:-64259352	None:intergenic
GTCCCTACACCTTATTATCC+AGG	0.416731	6.2:+64258984	MS.gene42899:CDS
ATTGCTGACGAAGTATTTGC+AGG	0.422387	6.2:+64259503	MS.gene42899:CDS
AGTGATTATGCAGCTTTGAC+AGG	0.425900	6.2:+64259249	MS.gene42899:intron
ATCAGACCTTATAGCGAGAA+AGG	0.438192	6.2:+64259911	MS.gene42899:CDS
GCAGCGCCGGTATGTTCTGT+TGG	0.448478	6.2:+64259870	MS.gene42899:CDS
CAGCGCCGGTATGTTCTGTT+GGG	0.459303	6.2:+64259871	MS.gene42899:CDS
ATGCAATGGCAAGCCGATCC+AGG	0.473529	6.2:-64259986	None:intergenic
GCTAAGATAAATATAACTCC+TGG	0.479435	6.2:+64259968	MS.gene42899:CDS
CCGTCTTATTCTATTTCGGT+TGG	0.485045	6.2:-64259792	None:intergenic
GGTGTCAGAATATTGCCAAC+AGG	0.485404	6.2:-64259428	None:intergenic
TCAGTACTTCGACAGTGAAC+AGG	0.488659	6.2:-64259305	None:intergenic
ATATTGCCAACAGGATTTGA+AGG	0.489937	6.2:-64259419	None:intergenic
ACGGGTGCACAATGAGTTTG+TGG	0.494025	6.2:+64259811	MS.gene42899:CDS
AGGGACGTAAGATGGCGTCC+AGG	0.510730	6.2:+64259269	MS.gene42899:CDS
GATGTTAGTACCATATTTGA+CGG	0.511266	6.2:-64258897	None:intergenic
TCAAATATGGTACTAACATC+GGG	0.513697	6.2:+64258900	MS.gene42899:CDS
TGAGATACTATCGTTCTGCT+TGG	0.519831	6.2:+64258938	MS.gene42899:CDS
GTGGATTGTTTAACCAAACT+AGG	0.523731	6.2:+64259830	MS.gene42899:CDS
GTATTTGCAGGCTCCACGTA+CGG	0.524369	6.2:+64259515	MS.gene42899:CDS
GCTTTGACAGGGACGTAAGA+TGG	0.539978	6.2:+64259261	MS.gene42899:intron
GATAAATATAACTCCTGGAT+CGG	0.540003	6.2:+64259973	MS.gene42899:CDS
TCGATTGCTGGATTTAGAGT+CGG	0.540691	6.2:+64259632	MS.gene42899:CDS
ACCATCCTGGTTCTATGCAA+TGG	0.546338	6.2:-64260000	None:intergenic
GATAATAAGGTGTAGGGACA+AGG	0.549163	6.2:-64258980	None:intergenic
CTCTAAATCCAGCAATCGAA+AGG	0.554066	6.2:-64259628	None:intergenic
TATTGCCAACAGGATTTGAA+GGG	0.556392	6.2:-64259418	None:intergenic
GTCAAATATGGTACTAACAT+CGG	0.563753	6.2:+64258899	MS.gene42899:CDS
ACAGGTATTAAGTCTATCCC+TGG	0.566102	6.2:-64259287	None:intergenic
TCCCTACACCTTATTATCCA+GGG	0.567075	6.2:+64258985	MS.gene42899:CDS
AAGTGTGCTAAGAGCAGCGC+CGG	0.573828	6.2:+64259857	MS.gene42899:CDS
GAAGTAACTAACCTCTGTGT+TGG	0.575820	6.2:-64259728	None:intergenic
GCCATTGCATAGAACCAGGA+TGG	0.576139	6.2:+64259999	MS.gene42899:CDS
ATATTCTGAATCGAGAACTT+CGG	0.576552	6.2:-64259561	None:intergenic
TTCTGTTGGGCTGATATGAG+TGG	0.577234	6.2:+64259884	MS.gene42899:CDS
GTGATTATGCAGCTTTGACA+GGG	0.578099	6.2:+64259250	MS.gene42899:intron
ATGTTAGTACCATATTTGAC+GGG	0.579929	6.2:-64258896	None:intergenic
AAACTCCTCGCTTCCGTACG+TGG	0.582162	6.2:-64259528	None:intergenic
ACCCTGGATAATAAGGTGTA+GGG	0.583042	6.2:-64258986	None:intergenic
CGAATCCTATCAATAACTAG+AGG	0.584201	6.2:-64260061	None:intergenic
TCGTTCTGCTTGGCAGACCA+TGG	0.585867	6.2:+64258948	MS.gene42899:CDS
AGCCGCGTTCATATAGTGTA+CGG	0.586505	6.2:+64259593	MS.gene42899:CDS
AAACGAGGAGTCAAAGTTCG+CGG	0.587306	6.2:+64259380	MS.gene42899:CDS
TACCCTGGATAATAAGGTGT+AGG	0.592046	6.2:-64258987	None:intergenic
CAACCGAAATAGAATAAGAC+GGG	0.592241	6.2:+64259793	MS.gene42899:CDS
AAACAAATACGAAACCATCC+TGG	0.595378	6.2:-64260013	None:intergenic
GGGACGTAAGATGGCGTCCA+GGG	0.596829	6.2:+64259270	MS.gene42899:CDS
TTGACTAAATGCTTGTTCAA+GGG	0.597175	6.2:-64259351	None:intergenic
TCGAACCCTTCAAATCCTGT+TGG	0.599882	6.2:+64259413	MS.gene42899:CDS
GGACAAGGAATGCATTTCCA+TGG	0.601989	6.2:-64258965	None:intergenic
GCTTGCCATTGCATAGAACC+AGG	0.608825	6.2:+64259995	MS.gene42899:CDS
TTTATGCATCAGGTTATGGG+AGG	0.621158	6.2:+64258858	None:intergenic
AGGCTCCACGTACGGAAGCG+AGG	0.623216	6.2:+64259523	MS.gene42899:CDS
CCAACCGAAATAGAATAAGA+CGG	0.633080	6.2:+64259792	MS.gene42899:CDS
ATCAGCCCAACAGAACATAC+CGG	0.634233	6.2:-64259876	None:intergenic
GAATCCTATCAATAACTAGA+GGG	0.646614	6.2:-64260060	None:intergenic
TTTAGTCAAGCAAGAAAACG+AGG	0.661177	6.2:+64259365	MS.gene42899:CDS
GGCCGTACACTATATGAACG+CGG	0.742883	6.2:-64259595	None:intergenic
CTATATCTGCACCAACACAG+AGG	0.756871	6.2:+64259717	MS.gene42899:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATGTATAAAAACTATTTATA+AGG	+	chr6.2:64259147-64259166	MS.gene42899:intron	10.0%
!!!	TAAACTATTGATTCCTATTT+GGG	+	chr6.2:64259026-64259045	MS.gene42899:intron	20.0%
!!!	TTAAACTATTGATTCCTATT+TGG	+	chr6.2:64259025-64259044	MS.gene42899:intron	20.0%
!	AGATCAAATAAAACCCAAAT+AGG	-	chr6.2:64259042-64259061	None:intergenic	25.0%
!	CATTTCTCTTAAAAGAAGTT+AGG	+	chr6.2:64259075-64259094	MS.gene42899:intron	25.0%
!!!	TGAAAATCTGCTCATTTTTT+TGG	-	chr6.2:64259696-64259715	None:intergenic	25.0%
	AAATCCCTCTAGTTATTGAT+AGG	+	chr6.2:64260056-64260075	MS.gene42899:CDS	30.0%
	AGAAAGGAGAACTTGAATTA+TGG	+	chr6.2:64259927-64259946	MS.gene42899:CDS	30.0%
	ATATTCTGAATCGAGAACTT+CGG	-	chr6.2:64259564-64259583	None:intergenic	30.0%
	ATGTTAGTACCATATTTGAC+GGG	-	chr6.2:64258899-64258918	None:intergenic	30.0%
	CTCTAGTTATTGATAGGATT+CGG	+	chr6.2:64260062-64260081	MS.gene42899:CDS	30.0%
	GAAAGGAGAACTTGAATTAT+GGG	+	chr6.2:64259928-64259947	MS.gene42899:CDS	30.0%
	GAATCCTATCAATAACTAGA+GGG	-	chr6.2:64260063-64260082	None:intergenic	30.0%
	GATAAATATAACTCCTGGAT+CGG	+	chr6.2:64259973-64259992	MS.gene42899:CDS	30.0%
	GATGTTAGTACCATATTTGA+CGG	-	chr6.2:64258900-64258919	None:intergenic	30.0%
	GCTAAGATAAATATAACTCC+TGG	+	chr6.2:64259968-64259987	MS.gene42899:CDS	30.0%
	GTCAAATATGGTACTAACAT+CGG	+	chr6.2:64258899-64258918	MS.gene42899:CDS	30.0%
	TCAAATATGGTACTAACATC+GGG	+	chr6.2:64258900-64258919	MS.gene42899:CDS	30.0%
	TTCCTGAATGAATCGTTTAT+CGG	-	chr6.2:64259762-64259781	None:intergenic	30.0%
	TTGACTAAATGCTTGTTCAA+GGG	-	chr6.2:64259354-64259373	None:intergenic	30.0%
!	TTCACACAACAAAACTGTTT+TGG	+	chr6.2:64259664-64259683	MS.gene42899:CDS	30.0%
!	TTTTACAACTATATCGTTCG+AGG	+	chr6.2:64260033-64260052	MS.gene42899:CDS	30.0%
	AAACAAATACGAAACCATCC+TGG	-	chr6.2:64260016-64260035	None:intergenic	35.0%
	AACGATAGTATCTCAATTGC+AGG	-	chr6.2:64258933-64258952	None:intergenic	35.0%
	AGAATTTGACCCGTCAAATA+TGG	+	chr6.2:64258887-64258906	MS.gene42899:CDS	35.0%
	ATATTGCCAACAGGATTTGA+AGG	-	chr6.2:64259422-64259441	None:intergenic	35.0%
	CAACCGAAATAGAATAAGAC+GGG	+	chr6.2:64259793-64259812	MS.gene42899:CDS	35.0%
	CCAACCGAAATAGAATAAGA+CGG	+	chr6.2:64259792-64259811	MS.gene42899:CDS	35.0%
	CGAATCCTATCAATAACTAG+AGG	-	chr6.2:64260064-64260083	None:intergenic	35.0%
	CTTGACTAAATGCTTGTTCA+AGG	-	chr6.2:64259355-64259374	None:intergenic	35.0%
	TATTGCCAACAGGATTTGAA+GGG	-	chr6.2:64259421-64259440	None:intergenic	35.0%
	TTATTATCCAGGGTAATCGA+CGG	+	chr6.2:64258995-64259014	MS.gene42899:intron	35.0%
	TTCCGATAAACGATTCATTC+AGG	+	chr6.2:64259757-64259776	MS.gene42899:CDS	35.0%
	TTTAGTCAAGCAAGAAAACG+AGG	+	chr6.2:64259365-64259384	MS.gene42899:CDS	35.0%
!	CAATCGAAAGGTCTTTTGAT+AGG	-	chr6.2:64259619-64259638	None:intergenic	35.0%
!	GTGGATTGTTTAACCAAACT+AGG	+	chr6.2:64259830-64259849	MS.gene42899:CDS	35.0%
!!	AGAAGACTGAAAAGCATTTC+TGG	-	chr6.2:64259452-64259471	None:intergenic	35.0%
	ACAGGTATTAAGTCTATCCC+TGG	-	chr6.2:64259290-64259309	None:intergenic	40.0%
	ACCCTGGATAATAAGGTGTA+GGG	-	chr6.2:64258989-64259008	None:intergenic	40.0%
	AGCACACTTGATTCCTAGTT+TGG	-	chr6.2:64259846-64259865	None:intergenic	40.0%
	AGTTCTCCTTTCTCGCTATA+AGG	-	chr6.2:64259920-64259939	None:intergenic	40.0%
	ATCAGACCTTATAGCGAGAA+AGG	+	chr6.2:64259911-64259930	MS.gene42899:CDS	40.0%
	CTCTAAATCCAGCAATCGAA+AGG	-	chr6.2:64259631-64259650	None:intergenic	40.0%
	GAAGTAACTAACCTCTGTGT+TGG	-	chr6.2:64259731-64259750	None:intergenic	40.0%
	GATAATAAGGTGTAGGGACA+AGG	-	chr6.2:64258983-64259002	None:intergenic	40.0%
	GTCGATTACCCTGGATAATA+AGG	-	chr6.2:64258996-64259015	None:intergenic	40.0%
	TACCCTGGATAATAAGGTGT+AGG	-	chr6.2:64258990-64259009	None:intergenic	40.0%
	TCAAAAGACCTTTCGATTGC+TGG	+	chr6.2:64259620-64259639	MS.gene42899:CDS	40.0%
	TCCCTACACCTTATTATCCA+GGG	+	chr6.2:64258985-64259004	MS.gene42899:CDS	40.0%
	TGAGATACTATCGTTCTGCT+TGG	+	chr6.2:64258938-64258957	MS.gene42899:CDS	40.0%
!	AGTGATTATGCAGCTTTGAC+AGG	+	chr6.2:64259249-64259268	MS.gene42899:intron	40.0%
!	ATTGCTGACGAAGTATTTGC+AGG	+	chr6.2:64259503-64259522	MS.gene42899:CDS	40.0%
!	CCGTCTTATTCTATTTCGGT+TGG	-	chr6.2:64259795-64259814	None:intergenic	40.0%
!	GCACCCGTCTTATTCTATTT+CGG	-	chr6.2:64259799-64259818	None:intergenic	40.0%
!	GTGATTATGCAGCTTTGACA+GGG	+	chr6.2:64259250-64259269	MS.gene42899:intron	40.0%
!	TCGATTGCTGGATTTAGAGT+CGG	+	chr6.2:64259632-64259651	MS.gene42899:CDS	40.0%
	AAACGAGGAGTCAAAGTTCG+CGG	+	chr6.2:64259380-64259399	MS.gene42899:CDS	45.0%
	AGCCGCGTTCATATAGTGTA+CGG	+	chr6.2:64259593-64259612	MS.gene42899:CDS	45.0%
	ATCAGCCCAACAGAACATAC+CGG	-	chr6.2:64259879-64259898	None:intergenic	45.0%
	CTATATCTGCACCAACACAG+AGG	+	chr6.2:64259717-64259736	MS.gene42899:CDS	45.0%
	GGACAAGGAATGCATTTCCA+TGG	-	chr6.2:64258968-64258987	None:intergenic	45.0%
	GGTGTCAGAATATTGCCAAC+AGG	-	chr6.2:64259431-64259450	None:intergenic	45.0%
	GTCCCTACACCTTATTATCC+AGG	+	chr6.2:64258984-64259003	MS.gene42899:CDS	45.0%
	TCAGTACTTCGACAGTGAAC+AGG	-	chr6.2:64259308-64259327	None:intergenic	45.0%
	TCGAACCCTTCAAATCCTGT+TGG	+	chr6.2:64259413-64259432	MS.gene42899:CDS	45.0%
	TTCTGTTGGGCTGATATGAG+TGG	+	chr6.2:64259884-64259903	MS.gene42899:CDS	45.0%
!!	ACCATCCTGGTTCTATGCAA+TGG	-	chr6.2:64260003-64260022	None:intergenic	45.0%
!!	TAAAAATATCTTAATTAAAA+AGG	+	chr6.2:64259112-64259131	MS.gene42899:intron	5.0%
	ACGGGTGCACAATGAGTTTG+TGG	+	chr6.2:64259811-64259830	MS.gene42899:CDS	50.0%
	GCCATTGCATAGAACCAGGA+TGG	+	chr6.2:64259999-64260018	MS.gene42899:CDS	50.0%
	GCTTGCCATTGCATAGAACC+AGG	+	chr6.2:64259995-64260014	MS.gene42899:CDS	50.0%
	GCTTTGACAGGGACGTAAGA+TGG	+	chr6.2:64259261-64259280	MS.gene42899:intron	50.0%
	GGCCGTACACTATATGAACG+CGG	-	chr6.2:64259598-64259617	None:intergenic	50.0%
	GTATTTGCAGGCTCCACGTA+CGG	+	chr6.2:64259515-64259534	MS.gene42899:CDS	50.0%
	AAACTCCTCGCTTCCGTACG+TGG	-	chr6.2:64259531-64259550	None:intergenic	55.0%
	AAGTGTGCTAAGAGCAGCGC+CGG	+	chr6.2:64259857-64259876	MS.gene42899:CDS	55.0%
	ATGCAATGGCAAGCCGATCC+AGG	-	chr6.2:64259989-64260008	None:intergenic	55.0%
	TCGTTCTGCTTGGCAGACCA+TGG	+	chr6.2:64258948-64258967	MS.gene42899:CDS	55.0%
!!	CAGCGCCGGTATGTTCTGTT+GGG	+	chr6.2:64259871-64259890	MS.gene42899:CDS	55.0%
!!	GAAAGTGCCGTCGATTACCC+TGG	-	chr6.2:64259005-64259024	None:intergenic	55.0%
	AGGGACGTAAGATGGCGTCC+AGG	+	chr6.2:64259269-64259288	MS.gene42899:CDS	60.0%
	GGGACGTAAGATGGCGTCCA+GGG	+	chr6.2:64259270-64259289	MS.gene42899:CDS	60.0%
!!	GCAGCGCCGGTATGTTCTGT+TGG	+	chr6.2:64259870-64259889	MS.gene42899:CDS	60.0%
	AGGCTCCACGTACGGAAGCG+AGG	+	chr6.2:64259523-64259542	MS.gene42899:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	64258861	64260100	64258861	ID=MS.gene42899
chr6.2	mRNA	64258861	64260100	64258861	ID=MS.gene42899.t1;Parent=MS.gene42899
chr6.2	exon	64258861	64259006	64258861	ID=MS.gene42899.t1.exon1;Parent=MS.gene42899.t1
chr6.2	CDS	64258861	64259006	64258861	ID=cds.MS.gene42899.t1;Parent=MS.gene42899.t1
chr6.2	exon	64259262	64260100	64259262	ID=MS.gene42899.t1.exon2;Parent=MS.gene42899.t1
chr6.2	CDS	64259262	64260100	64259262	ID=cds.MS.gene42899.t1;Parent=MS.gene42899.t1

Gene Sequence

>MS.gene42899

ATGCATCAGGTTATGGGAGGATCAGTAGAATTTGACCCGTCAAATATGGTACTAACATCGGGAGCAACTCCTGCAATTGAGATACTATCGTTCTGCTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCTTATTATCCAGGGTAATCGACGGCACTTTCTTAAACTATTGATTCCTATTTGGGTTTTATTTGATCTGACTTGTTTTTGTCATTTCTCTTAAAAGAAGTTAGGCTAAACAATATTTTTAAAAATATCTTAATTAAAAAGGAGATTATCTTTTATGTATAAAAACTATTTATAAGGAGTTTTTTTAAATCTATTTTTTTATTATTTAACTCAAATTCTATCGTTCTATAAAAAAAATTTAAAAGCTAATTAAAAAAGTGATTATGCAGCTTTGACAGGGACGTAAGATGGCGTCCAGGGATAGACTTAATACCTGTTCACTGTCGAAGTACTGACAATTTCAATCTAAACATCACTGCCCTTGAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGCGGAATTCTCATCTCGAACCCTTCAAATCCTGTTGGCAATATTCTGACACCAGAAATGCTTTTCAGTCTTCTAGACTTTGCTGAAGATAAAAACATTCATATCATTGCTGACGAAGTATTTGCAGGCTCCACGTACGGAAGCGAGGAGTTTGTGAGTATAGCCGAAGTTCTCGATTCAGAATATATAGATAAAAGCCGCGTTCATATAGTGTACGGCCTATCAAAAGACCTTTCGATTGCTGGATTTAGAGTCGGAGTTATACATTCACACAACAAAACTGTTTTGGATGCTGCCAAAAAAATGAGCAGATTTTCATCTATATCTGCACCAACACAGAGGTTAGTTACTTCAATGCTTTCCGATAAACGATTCATTCAGGAATACATTGAAACCAACCGAAATAGAATAAGACGGGTGCACAATGAGTTTGTGGATTGTTTAACCAAACTAGGAATCAAGTGTGCTAAGAGCAGCGCCGGTATGTTCTGTTGGGCTGATATGAGTGGTTTAATCAGACCTTATAGCGAGAAAGGAGAACTTGAATTATGGGAGAAGTTTATGAGTGTTGCTAAGATAAATATAACTCCTGGATCGGCTTGCCATTGCATAGAACCAGGATGGTTTCGTATTTGTTTTACAACTATATCGTTCGAGGAAATCCCTCTAGTTATTGATAGGATTCGGAAAGTTGTTGAAAGTT

Protein sequence

>MS.gene42899.t1

MHQVMGGSVEFDPSNMVLTSGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVRWRPGIDLIPVHCRSTDNFNLNITALEQAFSQARKRGVKVRGILISNPSNPVGNILTPEMLFSLLDFAEDKNIHIIADEVFAGSTYGSEEFVSIAEVLDSEYIDKSRVHIVYGLSKDLSIAGFRVGVIHSHNKTVLDAAKKMSRFSSISAPTQRLVTSMLSDKRFIQEYIETNRNRIRRVHNEFVDCLTKLGIKCAKSSAGMFCWADMSGLIRPYSEKGELELWEKFMSVAKINITPGSACHCIEPGWFRICFTTISFEEIPLVIDRIRKVVES