AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56036

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56036.t1 MTR_2g034960 95.797 571 23 1 1 571 12 581 0.0 1100
MS.gene56036.t1 MTR_4g121020 61.941 649 164 11 3 571 16 661 0.0 730
MS.gene56036.t1 MTR_4g121020 62.074 646 162 11 3 568 16 658 0.0 728
MS.gene56036.t1 MTR_4g121020 57.658 555 152 11 97 571 6 557 0.0 558
MS.gene56036.t1 MTR_1g032570 59.091 308 117 3 15 315 8 313 1.40e-115 357
MS.gene56036.t1 MTR_3g106220 48.352 364 143 9 16 346 6 357 8.75e-102 322
MS.gene56036.t1 MTR_3g086100 58.687 259 91 3 18 266 13 265 1.62e-95 303
MS.gene56036.t1 MTR_8g079940 58.103 253 104 1 16 266 23 275 8.99e-93 295
MS.gene56036.t1 MTR_1g013170 44.444 378 174 9 14 375 1 358 4.68e-92 291
MS.gene56036.t1 MTR_7g117705 52.174 276 120 4 14 281 1 272 1.29e-87 279
MS.gene56036.t1 MTR_1g032570 57.724 246 95 3 77 315 1 244 1.33e-85 276
MS.gene56036.t1 MTR_2g450070 53.307 257 107 1 14 257 14 270 4.27e-84 276
MS.gene56036.t1 MTR_2g450070 53.307 257 107 1 14 257 14 270 8.59e-84 275
MS.gene56036.t1 MTR_1g013180 55.000 260 113 2 12 267 150 409 9.90e-83 272
MS.gene56036.t1 MTR_4g131570 42.703 370 172 6 7 358 6 353 7.74e-82 268
MS.gene56036.t1 MTR_4g131600 51.737 259 102 3 12 259 14 260 1.34e-81 267
MS.gene56036.t1 MTR_4g131580 44.706 340 149 8 12 336 11 326 4.96e-78 258
MS.gene56036.t1 MTR_3g102590 46.484 256 86 3 15 267 5 212 3.79e-65 213
MS.gene56036.t1 MTR_3g086100 54.500 200 75 3 77 266 1 194 5.15e-64 218
MS.gene56036.t1 MTR_3g102600 43.284 268 92 3 14 281 4 211 2.04e-63 208
MS.gene56036.t1 MTR_3g102590 47.034 236 76 2 15 249 5 192 4.38e-59 195
MS.gene56036.t1 MTR_3g102600 43.882 237 75 2 15 251 5 183 7.78e-57 189
MS.gene56036.t1 MTR_4g021760 43.096 239 112 5 18 256 11 225 1.49e-56 192
MS.gene56036.t1 MTR_4g021855 40.357 280 135 5 18 294 10 260 1.30e-55 190
MS.gene56036.t1 MTR_4g021790 42.917 240 113 4 18 257 10 225 1.59e-55 189
MS.gene56036.t1 MTR_4g021845 41.810 232 111 2 18 249 10 217 8.04e-52 177
MS.gene56036.t1 MTR_0450s0040 37.770 278 138 7 20 288 6 257 3.68e-48 171
MS.gene56036.t1 MTR_3g102600 40.541 222 72 3 60 281 1 162 5.80e-48 165
MS.gene56036.t1 MTR_6g045327 38.843 242 120 6 17 256 13 228 3.92e-45 164
MS.gene56036.t1 MTR_8g105600 38.306 248 133 5 18 257 9 244 2.95e-42 160
MS.gene56036.t1 MTR_3g102600 40.625 192 56 2 60 251 1 134 4.12e-42 148
MS.gene56036.t1 MTR_7g026400 36.792 212 122 1 48 259 17 216 6.33e-41 157
MS.gene56036.t1 MTR_5g055260 37.083 240 100 6 18 257 10 198 1.07e-37 140
MS.gene56036.t1 MTR_1g013160 47.097 155 64 3 80 223 1 148 3.72e-35 130
MS.gene56036.t1 MTR_8g093040 34.167 240 119 5 17 256 13 213 9.68e-29 115
MS.gene56036.t1 MTR_8g032710 29.630 270 166 5 20 267 19 286 1.31e-27 116
MS.gene56036.t1 MTR_4g023980 35.220 159 80 3 68 226 39 174 7.31e-27 107
MS.gene56036.t1 MTR_4g064730 50.909 110 45 3 176 276 99 208 3.46e-24 103
MS.gene56036.t1 MTR_3g092780 36.250 160 96 3 22 176 56 214 5.12e-23 103
MS.gene56036.t1 MTR_3g092780 36.875 160 94 4 22 176 56 213 4.19e-22 100
MS.gene56036.t1 MTR_3g092780 26.341 410 263 11 22 405 56 452 6.07e-22 100
MS.gene56036.t1 MTR_6g016850 36.220 127 78 2 16 140 7 132 1.45e-21 92.4
MS.gene56036.t1 MTR_7g118260 38.971 136 74 2 19 148 11 143 1.85e-21 99.0
MS.gene56036.t1 MTR_3g092780 26.585 410 261 12 22 405 56 451 4.27e-21 97.8
MS.gene56036.t1 MTR_7g089010 57.971 69 29 0 193 261 84 152 5.07e-21 94.4
MS.gene56036.t1 MTR_4g061360 39.024 123 70 2 22 140 89 210 6.38e-21 97.4
MS.gene56036.t1 MTR_7g118260 39.844 128 68 2 19 140 11 135 6.93e-21 97.1
MS.gene56036.t1 MTR_1g067110 39.344 122 71 1 22 140 85 206 1.38e-20 96.7
MS.gene56036.t1 MTR_1g067110 39.344 122 71 1 22 140 85 206 1.52e-20 96.3
MS.gene56036.t1 MTR_3g037390 35.971 139 84 2 9 142 9 147 2.26e-20 95.5
MS.gene56036.t1 MTR_4g108880 35.507 138 84 2 8 142 21 156 7.74e-19 90.5
MS.gene56036.t1 MTR_8g024260 39.344 122 67 3 24 140 38 157 1.44e-18 89.7
MS.gene56036.t1 MTR_5g014040 37.903 124 68 2 135 258 255 369 7.25e-17 84.3
MS.gene56036.t1 MTR_5g014040 37.008 127 76 2 18 143 14 137 7.68e-14 74.7
MS.gene56036.t1 MTR_1g093080 37.692 130 74 4 188 315 199 323 5.16e-16 80.5
MS.gene56036.t1 MTR_5g014040 36.434 129 68 3 135 258 215 334 5.49e-15 78.2
MS.gene56036.t1 MTR_5g041350 55.714 70 24 2 196 264 11 74 5.74e-15 77.0
MS.gene56036.t1 MTR_5g014040 36.434 129 68 3 135 258 255 374 6.84e-15 78.2
MS.gene56036.t1 MTR_5g014040 37.008 127 76 2 18 143 14 137 8.62e-14 74.7
MS.gene56036.t1 MTR_4g098870 47.887 71 37 0 199 269 309 379 9.20e-15 77.8
MS.gene56036.t1 MTR_4g098870 36.220 127 77 2 18 143 14 137 1.97e-13 73.6
MS.gene56036.t1 MTR_4g098870 47.887 71 37 0 199 269 329 399 9.50e-15 77.8
MS.gene56036.t1 MTR_4g098870 36.220 127 77 2 18 143 34 157 2.25e-13 73.2
MS.gene56036.t1 MTR_4g098870 47.887 71 37 0 199 269 309 379 9.97e-15 77.4
MS.gene56036.t1 MTR_4g098870 36.220 127 77 2 18 143 14 137 3.49e-13 72.8
MS.gene56036.t1 MTR_4g098870 47.887 71 37 0 199 269 348 418 1.00e-14 77.8
MS.gene56036.t1 MTR_4g098870 36.220 127 77 2 18 143 53 176 3.05e-13 72.8
MS.gene56036.t1 MTR_4g098870 47.887 71 37 0 199 269 329 399 1.02e-14 77.4
MS.gene56036.t1 MTR_4g098870 36.220 127 77 2 18 143 34 157 4.26e-13 72.4
MS.gene56036.t1 MTR_4g078810 41.379 87 46 1 199 285 157 238 1.11e-14 76.6
MS.gene56036.t1 MTR_6g088950 35.632 87 56 0 57 143 43 129 5.02e-14 71.6
MS.gene56036.t1 MTR_5g017980 50.704 71 35 0 197 267 189 259 5.56e-14 73.6
MS.gene56036.t1 MTR_5g017980 50.704 71 35 0 197 267 190 260 5.62e-14 73.6
MS.gene56036.t1 MTR_2g090675 53.333 60 28 0 199 258 160 219 9.58e-14 73.9
MS.gene56036.t1 MTR_4g081710 55.932 59 25 1 196 253 13 71 1.07e-13 73.2
MS.gene56036.t1 MTR_2g086450 55.932 59 25 1 196 253 41 99 1.10e-13 73.6
MS.gene56036.t1 MTR_4g086835 51.515 66 32 0 197 262 271 336 1.20e-13 73.6
MS.gene56036.t1 MTR_6g453220 63.462 52 19 0 217 268 380 431 2.62e-13 72.8
MS.gene56036.t1 MTR_6g032990 51.667 60 28 1 195 253 37 96 2.64e-13 72.4
MS.gene56036.t1 MTR_5g054300 30.220 182 115 5 141 315 133 309 4.50e-13 71.2
MS.gene56036.t1 MTR_5g017980 50.000 72 35 1 197 267 190 261 7.00e-13 70.5
MS.gene56036.t1 MTR_6g444980 54.237 59 26 1 196 253 31 89 3.22e-12 68.6
MS.gene56036.t1 MTR_4g086835 50.746 67 32 1 197 262 271 337 3.66e-12 68.9
MS.gene56036.t1 MTR_6g444980 54.237 59 26 1 196 253 31 89 3.79e-12 68.6
MS.gene56036.t1 MTR_7g115530 59.259 54 21 1 200 252 218 271 6.73e-12 67.0
MS.gene56036.t1 MTR_7g115530 59.259 54 21 1 200 252 218 271 1.02e-11 67.0
MS.gene56036.t1 MTR_1g090670 52.308 65 27 2 193 253 34 98 1.09e-11 66.2
MS.gene56036.t1 MTR_7g115530 59.259 54 21 1 200 252 218 271 1.45e-11 67.0
MS.gene56036.t1 MTR_7g115530 59.259 54 21 1 200 252 218 271 1.48e-11 66.6
MS.gene56036.t1 MTR_4g113140 36.283 113 66 3 156 263 188 299 2.06e-11 66.6
MS.gene56036.t1 MTR_7g098250 49.206 63 31 1 196 257 258 320 2.83e-11 66.2
MS.gene56036.t1 MTR_1g080330 50.847 59 28 1 195 252 170 228 5.81e-11 63.9
MS.gene56036.t1 MTR_1g080330 50.847 59 28 1 195 252 170 228 7.43e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56036.t1 AT3G16857 46.353 658 240 19 11 569 26 669 1.68e-164 484
MS.gene56036.t1 AT3G16857 46.423 657 239 19 11 568 26 668 3.82e-164 484
MS.gene56036.t1 AT3G16857 43.954 612 230 19 56 568 1 598 3.10e-133 402
MS.gene56036.t1 AT2G25180 59.924 262 93 3 16 271 11 266 2.12e-96 306
MS.gene56036.t1 AT2G01760 45.263 380 162 8 14 363 3 366 8.75e-96 298
MS.gene56036.t1 AT2G01760 42.157 408 162 9 14 363 3 394 2.06e-89 282
MS.gene56036.t1 AT4G31920 55.000 260 93 2 14 267 9 250 1.53e-87 281
MS.gene56036.t1 AT1G67710 49.702 336 128 9 19 323 8 333 3.32e-86 277
MS.gene56036.t1 AT5G58080 46.875 320 128 7 16 314 12 310 8.65e-79 261
MS.gene56036.t1 AT2G01760 42.271 317 137 9 77 363 1 301 4.13e-62 207
MS.gene56036.t1 AT1G67710 45.683 278 110 9 77 323 1 268 1.14e-56 197
MS.gene56036.t1 AT5G49240 42.915 247 134 3 8 249 28 272 5.52e-54 185
MS.gene56036.t1 AT1G49190 36.364 275 134 6 17 267 29 286 4.55e-46 167
MS.gene56036.t1 AT3G62670 39.407 236 128 5 23 252 42 268 1.18e-45 167
MS.gene56036.t1 AT1G67710 41.473 258 110 9 97 323 12 259 1.16e-40 153
MS.gene56036.t1 AT5G07210 33.955 268 145 6 22 259 16 281 5.64e-39 151
MS.gene56036.t1 AT5G07210 32.971 276 145 7 22 259 16 289 2.01e-36 144
MS.gene56036.t1 AT2G27070 32.103 271 147 7 22 258 16 283 2.76e-33 134
MS.gene56036.t1 AT1G49190 44.800 125 69 0 17 141 29 153 1.89e-29 123
MS.gene56036.t1 AT5G59570 52.083 96 43 1 184 276 125 220 3.94e-25 106
MS.gene56036.t1 AT5G59570 52.083 96 43 1 184 276 125 220 3.94e-25 106
MS.gene56036.t1 AT3G46640 51.064 94 45 1 184 276 128 221 1.74e-23 102
MS.gene56036.t1 AT3G46640 51.064 94 45 1 184 276 128 221 1.74e-23 102
MS.gene56036.t1 AT3G46640 51.064 94 45 1 184 276 128 221 2.40e-23 101
MS.gene56036.t1 AT2G46790 40.650 123 68 2 22 140 37 158 4.79e-23 102
MS.gene56036.t1 AT2G46790 40.650 123 68 2 22 140 37 158 5.05e-23 102
MS.gene56036.t1 AT5G24470 39.200 125 71 2 21 141 49 172 5.84e-21 97.1
MS.gene56036.t1 AT5G60100 39.837 123 69 2 22 140 64 185 5.97e-21 95.9
MS.gene56036.t1 AT5G60100 39.837 123 69 2 22 140 64 185 5.97e-21 95.9
MS.gene56036.t1 AT5G60100 39.837 123 69 2 22 140 64 185 5.97e-21 95.9
MS.gene56036.t1 AT5G60100 39.837 123 69 2 22 140 64 185 8.54e-21 96.3
MS.gene56036.t1 AT5G60100 39.837 123 69 2 22 140 64 185 8.54e-21 96.3
MS.gene56036.t1 AT5G60100 39.837 123 69 2 22 140 64 185 8.54e-21 96.3
MS.gene56036.t1 AT2G40970 60.606 66 26 0 193 258 98 163 8.58e-21 92.4
MS.gene56036.t1 AT5G60100 39.837 123 69 2 22 140 64 185 1.73e-20 95.5
MS.gene56036.t1 AT5G05090 59.091 66 27 0 193 258 74 139 2.54e-20 91.7
MS.gene56036.t1 AT5G61380 38.710 124 73 1 22 142 19 142 4.10e-20 94.7
MS.gene56036.t1 AT3G10760 59.091 66 27 0 193 258 98 163 4.15e-20 92.4
MS.gene56036.t1 AT5G02810 40.164 122 70 1 22 140 78 199 5.20e-20 94.7
MS.gene56036.t1 AT5G44190 50.649 77 38 0 193 269 140 216 7.10e-18 85.9
MS.gene56036.t1 AT5G44190 50.649 77 38 0 193 269 140 216 9.55e-18 85.9
MS.gene56036.t1 AT2G20570 39.823 113 63 2 160 267 108 220 3.83e-16 81.3
MS.gene56036.t1 AT2G20570 38.060 134 77 2 135 267 108 236 1.85e-14 76.3
MS.gene56036.t1 AT3G04030 51.282 78 30 3 196 272 41 111 2.91e-14 75.1
MS.gene56036.t1 AT3G04030 51.282 78 30 3 196 272 41 111 3.40e-14 75.1
MS.gene56036.t1 AT5G18240 50.000 82 37 3 195 275 40 118 5.11e-14 74.7
MS.gene56036.t1 AT5G18240 50.000 82 37 3 195 275 40 118 5.11e-14 74.7
MS.gene56036.t1 AT5G18240 50.000 82 37 3 195 275 40 118 5.37e-14 74.7
MS.gene56036.t1 AT5G18240 50.000 82 37 3 195 275 40 118 5.73e-14 74.3
MS.gene56036.t1 AT5G18240 50.000 82 37 3 195 275 40 118 5.73e-14 74.3
MS.gene56036.t1 AT3G04030 48.052 77 33 2 196 272 41 110 4.39e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 5.15e-13 72.0
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 6.31e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 5.15e-13 72.0
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 6.31e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 5.15e-13 72.0
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 6.31e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 5.15e-13 72.0
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 6.31e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 5.15e-13 72.0
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 6.31e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 5.15e-13 72.0
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 6.31e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 6.77e-13 71.6
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 7.19e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 6.77e-13 71.6
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 7.19e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 6.77e-13 71.6
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 7.19e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 6.77e-13 71.6
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 7.19e-13 71.6
MS.gene56036.t1 AT4G18020 36.029 136 78 3 16 144 12 145 6.77e-13 71.6
MS.gene56036.t1 AT4G18020 51.613 62 29 1 197 258 294 354 7.19e-13 71.6
MS.gene56036.t1 AT1G69580 54.237 59 26 1 196 253 30 88 7.08e-13 70.5
MS.gene56036.t1 AT1G69580 54.237 59 26 1 196 253 30 88 7.15e-13 70.5
MS.gene56036.t1 AT3G24120 52.308 65 27 2 193 253 31 95 3.19e-12 68.2
MS.gene56036.t1 AT3G24120 52.308 65 27 2 193 253 31 95 3.29e-12 68.2
MS.gene56036.t1 AT1G79430 53.333 60 27 1 195 253 29 88 3.99e-12 68.6
MS.gene56036.t1 AT3G25790 38.655 119 61 4 204 320 200 308 6.92e-12 67.8
MS.gene56036.t1 AT4G13640 52.308 65 27 2 193 253 27 91 7.20e-12 67.0
MS.gene56036.t1 AT4G13640 52.308 65 27 2 193 253 27 91 7.22e-12 67.0
MS.gene56036.t1 AT1G49560 36.283 113 64 2 199 303 191 303 2.27e-11 65.9
MS.gene56036.t1 AT3G12730 49.275 69 28 2 192 253 9 77 2.81e-11 64.3
MS.gene56036.t1 AT1G25550 45.070 71 38 1 188 257 197 267 3.62e-11 65.5
MS.gene56036.t1 AT1G68670 45.679 81 42 2 184 262 198 278 5.77e-11 64.7
MS.gene56036.t1 AT5G29000 45.714 70 35 2 186 252 215 284 6.02e-11 64.3
MS.gene56036.t1 AT2G03500 47.059 68 35 1 197 263 230 297 7.97e-11 64.7

Find 131 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCTTCATCAACAGTTTA+TGG 0.134096 2.3:+55870637 MS.gene56036:CDS
CTTCAAACCCTTTCAGCTTC+TGG 0.197138 2.3:+55871522 MS.gene56036:CDS
CCTTATCTCCGACCAGTTTC+CGG 0.220153 2.3:+55869585 MS.gene56036:CDS
GAAGCTACTTCGGGAATTAA+AGG 0.286940 2.3:+55871975 MS.gene56036:CDS
TATGGATGGATTCAAACTTT+TGG 0.295920 2.3:+55870145 MS.gene56036:CDS
AGTACGCCAGAGTCAATATT+TGG 0.308653 2.3:+55871474 MS.gene56036:CDS
CACCAGTCTGCTCAATCCTT+TGG 0.321223 2.3:+55871717 MS.gene56036:CDS
TTGAAGATCAATTTCATTTA+CGG 0.326626 2.3:-55871505 None:intergenic
GAGAACTCAAAACTAAGATT+TGG 0.328580 2.3:+55871600 MS.gene56036:CDS
TTCAGCTTCTGGCCAGTTCT+CGG 0.333161 2.3:+55871533 MS.gene56036:CDS
ACTTCGGGAATTAAAGGATT+AGG 0.335057 2.3:+55871981 MS.gene56036:CDS
AAGAAGATGAAGCAGATGAT+AGG 0.337750 2.3:+55870570 MS.gene56036:CDS
TGCTTTGGCTCAATGTTGAT+AGG 0.342601 2.3:-55871681 None:intergenic
TTGAGCAGACTGGTGAAAAT+TGG 0.352834 2.3:-55871709 None:intergenic
TGAGGTGTTGACCAACATTA+TGG 0.359965 2.3:-55872211 None:intergenic
TGAAAATTGGCAAACTGCTT+TGG 0.368522 2.3:-55871696 None:intergenic
CGACGTGCATATGCCTGATA+TGG 0.368808 2.3:+55870127 MS.gene56036:CDS
TCGAGGCTTTGAAGAATATA+TGG 0.369544 2.3:+55870396 MS.gene56036:CDS
CTTCGGGAATTAAAGGATTA+GGG 0.371380 2.3:+55871982 MS.gene56036:CDS
AAACAATGCTTACTAATAAC+AGG 0.383212 2.3:-55870194 None:intergenic
CTATTGACTGATATTCCATT+TGG 0.387671 2.3:-55871891 None:intergenic
CACGGAGACCCGCCGGAAAC+TGG 0.388410 2.3:-55869597 None:intergenic
TTCGGAAGAGAAAGAATAAC+TGG 0.397525 2.3:+55870429 MS.gene56036:CDS
TCATTTAGCATCTGACCTCT+TGG 0.399993 2.3:-55871813 None:intergenic
CTAGACTTTGCACCGAGAAC+TGG 0.401730 2.3:-55871545 None:intergenic
AAACGTTGCCAGTCATCTTC+AGG 0.403511 2.3:+55871011 MS.gene56036:CDS
AACCTCAGCTCTCTTGCATT+TGG 0.403620 2.3:-55870054 None:intergenic
ATTTGCTAATCCCCAATCAT+TGG 0.406561 2.3:-55872045 None:intergenic
CAAAGAAGCCTCGAGTTGTT+TGG 0.412556 2.3:+55870609 MS.gene56036:CDS
TTTCATGCGGAAGCTACTTC+GGG 0.416515 2.3:+55871966 MS.gene56036:CDS
CCATCAGAAGTCCAATGATT+GGG 0.416956 2.3:+55872034 MS.gene56036:CDS
TATTCAAGTTACTTTGCTGC+TGG 0.418842 2.3:-55871440 None:intergenic
ATGGAAATGATGAATGTTCC+TGG 0.426157 2.3:+55870976 MS.gene56036:CDS
AGTTTGAATCCATCCATATC+AGG 0.428415 2.3:-55870140 None:intergenic
GTTTCATGCGGAAGCTACTT+CGG 0.458202 2.3:+55871965 MS.gene56036:CDS
ATAAGGTTGCCGGAGTTTGA+TGG 0.460200 2.3:-55869568 None:intergenic
TATGGCTGTTGTGAATCAAT+TGG 0.460490 2.3:+55870655 MS.gene56036:CDS
TCCATCAGAAGTCCAATGAT+TGG 0.463174 2.3:+55872033 MS.gene56036:CDS
TGGAAAGATCTGAAGCAATC+TGG 0.465336 2.3:+55870449 MS.gene56036:CDS
CCGGAAACTGGTCGGAGATA+AGG 0.470882 2.3:-55869585 None:intergenic
CCCAATCATTGGACTTCTGA+TGG 0.470889 2.3:-55872034 None:intergenic
TTGTCGAGTCTGTTGGATAG+AGG 0.472904 2.3:-55872159 None:intergenic
ATGGCTGTTGTGAATCAATT+GGG 0.473696 2.3:+55870656 MS.gene56036:CDS
ATGCAACCTACAGGACCAAA+TGG 0.473881 2.3:+55871876 MS.gene56036:CDS
ACATATGAGCAGCAGTAAAC+CGG 0.474063 2.3:+55871638 MS.gene56036:CDS
CTAGCCAAGCTTCAAGCAGC+AGG 0.477941 2.3:+55871564 MS.gene56036:CDS
GGAACATATTGGATTGGAGA+TGG 0.480393 2.3:+55870166 MS.gene56036:CDS
AGAAGATGAAGCAGATGATA+GGG 0.481453 2.3:+55870571 MS.gene56036:CDS
AGATCAATGTTGCCTTGTAA+AGG 0.489412 2.3:-55872104 None:intergenic
TTCCCTCTTAGATGCACTCC+GGG 0.489466 2.3:+55871915 MS.gene56036:CDS
GTAGGTTGCATTAAAGATGA+TGG 0.494028 2.3:-55871864 None:intergenic
CAACATGCAAATCCTTTACA+AGG 0.495519 2.3:+55872092 MS.gene56036:CDS
TACTCATCTTCAACGAATGA+AGG 0.499328 2.3:+55870521 MS.gene56036:CDS
GATATTCCATTTGGTCCTGT+AGG 0.499380 2.3:-55871882 None:intergenic
GCTTTGGCTCAATGTTGATA+GGG 0.500235 2.3:-55871680 None:intergenic
CAAAACTAAGATTTGGAGAT+GGG 0.507173 2.3:+55871607 MS.gene56036:CDS
CAAGGATCATGAGGCAAGTA+GGG 0.508406 2.3:-55869639 None:intergenic
CTGGTCGGAGATAAGGTTGC+CGG 0.509887 2.3:-55869578 None:intergenic
ATTCAAGTTACTTTGCTGCT+GGG 0.515195 2.3:-55871439 None:intergenic
GTTGAGAAGCATCATATGTC+AGG 0.515544 2.3:-55872073 None:intergenic
CATGAGCGTATTTCTGAACC+AGG 0.515894 2.3:+55872337 MS.gene56036:CDS
GATTGGGGATTAGCAAATAC+AGG 0.520281 2.3:+55872050 MS.gene56036:CDS
TTCAAAGCCTCGATTCGCAC+AGG 0.523205 2.3:-55870386 None:intergenic
ATATATGGCAGCATGTGGTT+CGG 0.524503 2.3:+55870411 MS.gene56036:CDS
TCAAGGATCATGAGGCAAGT+AGG 0.525643 2.3:-55869640 None:intergenic
ATATCCAGTAGCAGTACAAA+AGG 0.527621 2.3:+55871939 MS.gene56036:CDS
TGACTGACTTGATCAGAGAA+GGG 0.534175 2.3:-55872305 None:intergenic
AAACCGGTGAACTTTCTTCA+CGG 0.535622 2.3:+55871654 MS.gene56036:CDS
ATACAAATTCTCATGCTACA+AGG 0.536556 2.3:+55871838 MS.gene56036:CDS
TCAAAACTAAGATTTGGAGA+TGG 0.536886 2.3:+55871606 MS.gene56036:CDS
TTGACTGACTTGATCAGAGA+AGG 0.537467 2.3:-55872306 None:intergenic
TTGTATCTTCGAAGGTTGAG+TGG 0.537963 2.3:+55871411 MS.gene56036:CDS
TGTCGACAAAAGTTGTATTG+AGG 0.539424 2.3:-55872229 None:intergenic
GAACTGGCCAGAAGCTGAAA+GGG 0.541735 2.3:-55871529 None:intergenic
ATCTCCGACCAGTTTCCGGC+GGG 0.544362 2.3:+55869589 MS.gene56036:CDS
TCGCATATTTGCGCTGCCAA+AGG 0.548078 2.3:-55871733 None:intergenic
AATACCGTTTGTATCTTCGA+AGG 0.548651 2.3:+55871403 MS.gene56036:CDS
AGAACTGGCCAGAAGCTGAA+AGG 0.554761 2.3:-55871530 None:intergenic
TCATCTTTAATGCAACCTAC+AGG 0.556863 2.3:+55871867 MS.gene56036:CDS
TTAGTGATGTCGGCTGATGA+TGG 0.559693 2.3:+55870308 MS.gene56036:intron
ATACCCGGAGTGCATCTAAG+AGG 0.561462 2.3:-55871918 None:intergenic
ATATCGTACCTGAAGATGAC+TGG 0.562314 2.3:-55871019 None:intergenic
AAGCCCTTGGTTGATGCAGA+TGG 0.564484 2.3:+55871779 MS.gene56036:CDS
CTCTGATCAAGTCAGTCAAG+AGG 0.573459 2.3:+55872310 MS.gene56036:CDS
TTTGTCGACAATTCATTAAG+GGG 0.574449 2.3:+55872242 MS.gene56036:CDS
TTGATCTCAATGTTTGTACT+CGG 0.576687 2.3:-55872281 None:intergenic
ATTCCGTGAAGAAAGTTCAC+CGG 0.576781 2.3:-55871657 None:intergenic
GTTCCTCCAAATATTGACTC+TGG 0.578483 2.3:-55871480 None:intergenic
TGCCAAAGGATTGAGCAGAC+TGG 0.579512 2.3:-55871719 None:intergenic
TTTCCCTCTTAGATGCACTC+CGG 0.583189 2.3:+55871914 MS.gene56036:CDS
TGACTCTGGCGTACTCATGA+AGG 0.583909 2.3:-55871466 None:intergenic
GCAAGAGCTCAAAGAAGAGG+AGG 0.587165 2.3:+55870543 MS.gene56036:CDS
GACTGACTTGATCAGAGAAG+GGG 0.587939 2.3:-55872304 None:intergenic
ACAAGTACACGGAGACCCGC+CGG 0.589774 2.3:-55869604 None:intergenic
CAAGGTGATCACCATAATGT+TGG 0.591086 2.3:+55872200 MS.gene56036:CDS
AAGTCCTGCTGCTTGAAGCT+TGG 0.592461 2.3:-55871568 None:intergenic
AGATGAGTAATTAGCATCAG+TGG 0.594629 2.3:-55870507 None:intergenic
CTGCTGCAAAGAGAAGCCCT+TGG 0.595593 2.3:+55871766 MS.gene56036:CDS
TGGTGAAGTTGAGGTTGACA+TGG 0.599570 2.3:-55869548 None:intergenic
AAGATCAATTTCATTTACGG+AGG 0.607064 2.3:-55871502 None:intergenic
GAGCCATCTGCATCAACCAA+GGG 0.609724 2.3:-55871782 None:intergenic
TGAGCCATCTGCATCAACCA+AGG 0.610874 2.3:-55871783 None:intergenic
AATAGAGATGGTATGAGTCA+AGG 0.612883 2.3:+55872182 MS.gene56036:CDS
TCAACCTTCGAAGATACAAA+CGG 0.613662 2.3:-55871407 None:intergenic
AATCAAACCTGTGCGAATCG+AGG 0.614923 2.3:+55870379 MS.gene56036:CDS
TCAACTTCACCATCAAACTC+CGG 0.617812 2.3:+55869559 MS.gene56036:CDS
TACCCGGAGTGCATCTAAGA+GGG 0.617885 2.3:-55871917 None:intergenic
GTGCATATGCCTGATATGGA+TGG 0.621582 2.3:+55870131 MS.gene56036:CDS
CAGACTCGACAAAATAGAGA+TGG 0.622886 2.3:+55872170 MS.gene56036:CDS
CATCAGAAGTCCAATGATTG+GGG 0.623338 2.3:+55872035 MS.gene56036:CDS
AAGATTGAAGACCTTCATAG+AGG 0.625198 2.3:-55869681 None:intergenic
GCATTCTTTCAAGGATCATG+AGG 0.625199 2.3:-55869648 None:intergenic
TGGAAATGATGAATGTTCCT+GGG 0.628797 2.3:+55870977 MS.gene56036:CDS
AAAGATCTGAAGCAATCTGG+TGG 0.628824 2.3:+55870452 MS.gene56036:CDS
TATCTCCGACCAGTTTCCGG+CGG 0.629363 2.3:+55869588 MS.gene56036:CDS
GAAGAATATATGGCAGCATG+TGG 0.629609 2.3:+55870406 MS.gene56036:CDS
TACAAAAGGCGTGTTTCATG+CGG 0.631885 2.3:+55871953 MS.gene56036:CDS
TTCGGGAATTAAAGGATTAG+GGG 0.632056 2.3:+55871983 MS.gene56036:CDS
CCACGATGGCCTAAAATCGA+CGG 0.634519 2.3:-55872131 None:intergenic
AAGGCAAGAGCTCAAAGAAG+AGG 0.635070 2.3:+55870540 MS.gene56036:CDS
TCGGGAATTAAAGGATTAGG+GGG 0.636049 2.3:+55871984 MS.gene56036:CDS
ACGCCAGAGTCAATATTTGG+AGG 0.638077 2.3:+55871477 MS.gene56036:CDS
TCAATAGACCAAACAACTCG+AGG 0.639848 2.3:-55870617 None:intergenic
GGAGTTTGATGGTGAAGTTG+AGG 0.651951 2.3:-55869557 None:intergenic
CATCATCAACAACAAGTACA+CGG 0.653506 2.3:-55869615 None:intergenic
GAGACCCGCCGGAAACTGGT+CGG 0.661705 2.3:-55869593 None:intergenic
CAAGAGCTCAAAGAAGAGGA+GGG 0.663100 2.3:+55870544 MS.gene56036:CDS
TACCAAATGCAAGAGAGCTG+AGG 0.664673 2.3:+55870052 MS.gene56036:CDS
GTACTGCTACTGGATATACC+CGG 0.685345 2.3:-55871933 None:intergenic
ATGGCTCAGTCTCAACCAAG+AGG 0.702081 2.3:+55871798 MS.gene56036:CDS
GTAATGAAAGGTGTGACACA+CGG 0.719143 2.3:+55870341 MS.gene56036:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTGAACTAAAAATAAAAA+TGG - chr2.3:55869841-55869860 None:intergenic 15.0%
!! TAAGGAAACATAAATATTTA+GGG - chr2.3:55872384-55872403 None:intergenic 15.0%
!! TCTGAACTAAAAATAAAAAT+GGG - chr2.3:55869840-55869859 None:intergenic 15.0%
!! TTAGTTTATGTAAAAATTTC+AGG + chr2.3:55872663-55872682 MS.gene56036:intron 15.0%
!!! AATAAATGATTTGTCTATAA+AGG - chr2.3:55872412-55872431 None:intergenic 15.0%
!!! AGAAATATTTAAGATTCTAT+GGG - chr2.3:55870858-55870877 None:intergenic 15.0%
!! AAAAAACTCAATCAAACAAA+AGG - chr2.3:55869809-55869828 None:intergenic 20.0%
!! AAAAACTCAATCAAACAAAA+GGG - chr2.3:55869808-55869827 None:intergenic 20.0%
!! CAAGGATATAACATAATTAA+GGG - chr2.3:55870698-55870717 None:intergenic 20.0%
!! CTTAACAATAACAAAAATAG+AGG - chr2.3:55871063-55871082 None:intergenic 20.0%
!! CTTCTAAACTAACTTATTAT+AGG - chr2.3:55871110-55871129 None:intergenic 20.0%
!! GTAAGGAAACATAAATATTT+AGG - chr2.3:55872385-55872404 None:intergenic 20.0%
!! TTGAAGATCAATTTCATTTA+CGG - chr2.3:55871508-55871527 None:intergenic 20.0%
!!! AAATATTTAAGATTCTATGG+GGG - chr2.3:55870856-55870875 None:intergenic 20.0%
!!! ATAATAAGTTAGTTTAGAAG+TGG + chr2.3:55871110-55871129 MS.gene56036:intron 20.0%
!!! ATCATTTCCATAATCTTTTT+AGG - chr2.3:55870967-55870986 None:intergenic 20.0%
!!! CAGAAATATTTAAGATTCTA+TGG - chr2.3:55870859-55870878 None:intergenic 20.0%
!!! GAAATATTTAAGATTCTATG+GGG - chr2.3:55870857-55870876 None:intergenic 20.0%
!!! GCTTTTGATATGATTTAATA+TGG + chr2.3:55869893-55869912 MS.gene56036:intron 20.0%
!!! TAAGTGTTTTTTTCAACTAT+TGG + chr2.3:55869929-55869948 MS.gene56036:intron 20.0%
!!! TTATTTTTAGTTCAGATTCT+TGG + chr2.3:55869844-55869863 MS.gene56036:intron 20.0%
!!! TTTTAACACTAATTCATGAT+GGG - chr2.3:55869726-55869745 None:intergenic 20.0%
!!! TTTTTAACACTAATTCATGA+TGG - chr2.3:55869727-55869746 None:intergenic 20.0%
! AAACAATGCTTACTAATAAC+AGG - chr2.3:55870197-55870216 None:intergenic 25.0%
! AAATTGATATTGATATGCAG+AGG + chr2.3:55870936-55870955 MS.gene56036:intron 25.0%
! AGCATAATTCAAAAGAAAGA+TGG - chr2.3:55869876-55869895 None:intergenic 25.0%
! ATATCTCGGAAAAACTTTAA+GGG - chr2.3:55870784-55870803 None:intergenic 25.0%
! CTTCTTAGAGAGAATAAAAA+CGG + chr2.3:55870086-55870105 MS.gene56036:CDS 25.0%
! GCAAGGATATAACATAATTA+AGG - chr2.3:55870699-55870718 None:intergenic 25.0%
! TATATCTCGGAAAAACTTTA+AGG - chr2.3:55870785-55870804 None:intergenic 25.0%
! TTCTTAGAGAGAATAAAAAC+GGG + chr2.3:55870087-55870106 MS.gene56036:CDS 25.0%
! TTGTCTATAAAGGAAAAGTA+AGG - chr2.3:55872402-55872421 None:intergenic 25.0%
!! AAAGTCTCAAACTTTAACTT+TGG - chr2.3:55869963-55869982 None:intergenic 25.0%
!! TTTTGTCGACAATTCATTAA+GGG + chr2.3:55872241-55872260 MS.gene56036:CDS 25.0%
!!! TTCAAACTTTTGGAACATAT+TGG + chr2.3:55870155-55870174 MS.gene56036:CDS 25.0%
AACAATCTTGTAGAATCACA+AGG - chr2.3:55870810-55870829 None:intergenic 30.0%
AAGATCAATTTCATTTACGG+AGG - chr2.3:55871505-55871524 None:intergenic 30.0%
ACAAGCAAAACAGAATCAAA+TGG - chr2.3:55870013-55870032 None:intergenic 30.0%
ACTGTAACTCTTAACATTCA+AGG - chr2.3:55871321-55871340 None:intergenic 30.0%
ATACAAATTCTCATGCTACA+AGG + chr2.3:55871838-55871857 MS.gene56036:CDS 30.0%
ATGTAAAAATTTCAGGCTTC+AGG + chr2.3:55872670-55872689 MS.gene56036:intron 30.0%
CAAAACTAAGATTTGGAGAT+GGG + chr2.3:55871607-55871626 MS.gene56036:CDS 30.0%
GAATCACAAGGATTATATCT+CGG - chr2.3:55870798-55870817 None:intergenic 30.0%
GAGAACTCAAAACTAAGATT+TGG + chr2.3:55871600-55871619 MS.gene56036:CDS 30.0%
TAACAGGATCTGTTATAAAC+TGG - chr2.3:55872528-55872547 None:intergenic 30.0%
TAGTTGCCAATGTAAATAGT+TGG + chr2.3:55872564-55872583 MS.gene56036:intron 30.0%
TCAAAACTAAGATTTGGAGA+TGG + chr2.3:55871606-55871625 MS.gene56036:CDS 30.0%
TGTAAAAATTTCAGGCTTCA+GGG + chr2.3:55872671-55872690 MS.gene56036:intron 30.0%
TTGATCTCAATGTTTGTACT+CGG - chr2.3:55872284-55872303 None:intergenic 30.0%
TTTGTCGACAATTCATTAAG+GGG + chr2.3:55872242-55872261 MS.gene56036:CDS 30.0%
! AATATTTAGGGTCAACAGAA+AGG - chr2.3:55872372-55872391 None:intergenic 30.0%
! ATAAGTTAGTTTAGAAGTGG+TGG + chr2.3:55871113-55871132 MS.gene56036:intron 30.0%
! CTATTGACTGATATTCCATT+TGG - chr2.3:55871894-55871913 None:intergenic 30.0%
! CTTTTGTCGACAATTCATTA+AGG + chr2.3:55872240-55872259 MS.gene56036:CDS 30.0%
! GATAATGAGTTTGACTTTGA+TGG + chr2.3:55872483-55872502 MS.gene56036:intron 30.0%
! TGAAAGAGAACATTTTTGCA+AGG - chr2.3:55870716-55870735 None:intergenic 30.0%
! TTGATTCTGTTTTGCTTGTT+GGG + chr2.3:55870014-55870033 MS.gene56036:intron 30.0%
! TTTGATTCTGTTTTGCTTGT+TGG + chr2.3:55870013-55870032 MS.gene56036:intron 30.0%
!! CGTACAAACTGATTTTGTAA+GGG + chr2.3:55871147-55871166 MS.gene56036:intron 30.0%
!! TATGGATGGATTCAAACTTT+TGG + chr2.3:55870145-55870164 MS.gene56036:CDS 30.0%
!! TCATCTTTGTTTGTTTTCCA+CGG + chr2.3:55870733-55870752 MS.gene56036:intron 30.0%
!! TCGTACAAACTGATTTTGTA+AGG + chr2.3:55871146-55871165 MS.gene56036:intron 30.0%
!!! AATCTTAGTTTTGAGTTCTC+AGG - chr2.3:55871600-55871619 None:intergenic 30.0%
!!! ACTTTTGGAACATATTGGAT+TGG + chr2.3:55870160-55870179 MS.gene56036:CDS 30.0%
!!! TGAATGTGTTTTAGTGATGT+CGG + chr2.3:55870298-55870317 MS.gene56036:intron 30.0%
AAGAAGATGAAGCAGATGAT+AGG + chr2.3:55870570-55870589 MS.gene56036:CDS 35.0%
AAGATTGAAGACCTTCATAG+AGG - chr2.3:55869684-55869703 None:intergenic 35.0%
AATACCGTTTGTATCTTCGA+AGG + chr2.3:55871403-55871422 MS.gene56036:CDS 35.0%
AATAGAGATGGTATGAGTCA+AGG + chr2.3:55872182-55872201 MS.gene56036:CDS 35.0%
ACTTCGGGAATTAAAGGATT+AGG + chr2.3:55871981-55872000 MS.gene56036:CDS 35.0%
AGAAGATGAAGCAGATGATA+GGG + chr2.3:55870571-55870590 MS.gene56036:CDS 35.0%
AGAGCCTATATAAGATCTCA+TGG + chr2.3:55871198-55871217 MS.gene56036:intron 35.0%
AGATCAATGTTGCCTTGTAA+AGG - chr2.3:55872107-55872126 None:intergenic 35.0%
AGATGAGTAATTAGCATCAG+TGG - chr2.3:55870510-55870529 None:intergenic 35.0%
AGTTTGAATCCATCCATATC+AGG - chr2.3:55870143-55870162 None:intergenic 35.0%
ATAAACTGGAATGTTGTCTG+CGG - chr2.3:55872514-55872533 None:intergenic 35.0%
ATATCCAGTAGCAGTACAAA+AGG + chr2.3:55871939-55871958 MS.gene56036:CDS 35.0%
ATGGAAATGATGAATGTTCC+TGG + chr2.3:55870976-55870995 MS.gene56036:CDS 35.0%
ATGGCTGTTGTGAATCAATT+GGG + chr2.3:55870656-55870675 MS.gene56036:CDS 35.0%
CAAAATCAGTTTGTACGATG+AGG - chr2.3:55871144-55871163 None:intergenic 35.0%
CAACATGCAAATCCTTTACA+AGG + chr2.3:55872092-55872111 MS.gene56036:CDS 35.0%
CATCATCAACAACAAGTACA+CGG - chr2.3:55869618-55869637 None:intergenic 35.0%
CTTCGGGAATTAAAGGATTA+GGG + chr2.3:55871982-55872001 MS.gene56036:CDS 35.0%
GAGCCTATATAAGATCTCAT+GGG + chr2.3:55871199-55871218 MS.gene56036:intron 35.0%
GAGTGATGATTAGATTCATG+TGG - chr2.3:55872594-55872613 None:intergenic 35.0%
GGAACACCAACTATTTACAT+TGG - chr2.3:55872573-55872592 None:intergenic 35.0%
GGCTGTTCCTAAAAAGATTA+TGG + chr2.3:55870957-55870976 MS.gene56036:CDS 35.0%
GTAACTCTTAACATTCAAGG+TGG - chr2.3:55871318-55871337 None:intergenic 35.0%
GTAGGTTGCATTAAAGATGA+TGG - chr2.3:55871867-55871886 None:intergenic 35.0%
TAAGATTCTATGGGGGAAAA+GGG - chr2.3:55870849-55870868 None:intergenic 35.0%
TACTCATCTTCAACGAATGA+AGG + chr2.3:55870521-55870540 MS.gene56036:CDS 35.0%
TATGGCTGTTGTGAATCAAT+TGG + chr2.3:55870655-55870674 MS.gene56036:CDS 35.0%
TCAACCTTCGAAGATACAAA+CGG - chr2.3:55871410-55871429 None:intergenic 35.0%
TCATCTTTAATGCAACCTAC+AGG + chr2.3:55871867-55871886 MS.gene56036:CDS 35.0%
TGAAAATTGGCAAACTGCTT+TGG - chr2.3:55871699-55871718 None:intergenic 35.0%
TGAGCTTCATCAACAGTTTA+TGG + chr2.3:55870637-55870656 MS.gene56036:CDS 35.0%
TGATTAGAAAGAGAGCTAAC+AGG - chr2.3:55872544-55872563 None:intergenic 35.0%
TGGAAATGATGAATGTTCCT+GGG + chr2.3:55870977-55870996 MS.gene56036:CDS 35.0%
TGTCGACAAAAGTTGTATTG+AGG - chr2.3:55872232-55872251 None:intergenic 35.0%
TTAAGATTCTATGGGGGAAA+AGG - chr2.3:55870850-55870869 None:intergenic 35.0%
TTCGGAAGAGAAAGAATAAC+TGG + chr2.3:55870429-55870448 MS.gene56036:CDS 35.0%
TTCGGGAATTAAAGGATTAG+GGG + chr2.3:55871983-55872002 MS.gene56036:CDS 35.0%
! AAAAACGGAGCATTCTTTCA+AGG - chr2.3:55869660-55869679 None:intergenic 35.0%
! ATTCAAGTTACTTTGCTGCT+GGG - chr2.3:55871442-55871461 None:intergenic 35.0%
! ATTTGCTAATCCCCAATCAT+TGG - chr2.3:55872048-55872067 None:intergenic 35.0%
! GGAAAAAACGTGGTAATGAA+AGG + chr2.3:55870329-55870348 MS.gene56036:CDS 35.0%
! TATTCAAGTTACTTTGCTGC+TGG - chr2.3:55871443-55871462 None:intergenic 35.0%
! TCGGAAAAACTTTAAGGGAA+TGG - chr2.3:55870779-55870798 None:intergenic 35.0%
!! TCGAGGCTTTGAAGAATATA+TGG + chr2.3:55870396-55870415 MS.gene56036:CDS 35.0%
AAACCGGTGAACTTTCTTCA+CGG + chr2.3:55871654-55871673 MS.gene56036:CDS 40.0%
ACATATGAGCAGCAGTAAAC+CGG + chr2.3:55871638-55871657 MS.gene56036:CDS 40.0%
AGGTCATATCTCATCTAACG+TGG - chr2.3:55871090-55871109 None:intergenic 40.0%
AGTACGCCAGAGTCAATATT+TGG + chr2.3:55871474-55871493 MS.gene56036:CDS 40.0%
ATATATGGCAGCATGTGGTT+CGG + chr2.3:55870411-55870430 MS.gene56036:CDS 40.0%
ATATCGTACCTGAAGATGAC+TGG - chr2.3:55871022-55871041 None:intergenic 40.0%
ATGTCCACTTATCAGTGTGA+GGG + chr2.3:55871271-55871290 MS.gene56036:intron 40.0%
ATTCCGTGAAGAAAGTTCAC+CGG - chr2.3:55871660-55871679 None:intergenic 40.0%
CAAGGTGATCACCATAATGT+TGG + chr2.3:55872200-55872219 MS.gene56036:CDS 40.0%
CAGACTCGACAAAATAGAGA+TGG + chr2.3:55872170-55872189 MS.gene56036:CDS 40.0%
CATCAGAAGTCCAATGATTG+GGG + chr2.3:55872035-55872054 MS.gene56036:CDS 40.0%
CCATCAGAAGTCCAATGATT+GGG + chr2.3:55872034-55872053 MS.gene56036:CDS 40.0%
GAAGAATATATGGCAGCATG+TGG + chr2.3:55870406-55870425 MS.gene56036:CDS 40.0%
GAAGCTACTTCGGGAATTAA+AGG + chr2.3:55871975-55871994 MS.gene56036:CDS 40.0%
GACCTTCATAGAGGCAAAAA+CGG - chr2.3:55869675-55869694 None:intergenic 40.0%
GATATTCCATTTGGTCCTGT+AGG - chr2.3:55871885-55871904 None:intergenic 40.0%
GCATTCTTTCAAGGATCATG+AGG - chr2.3:55869651-55869670 None:intergenic 40.0%
GGTCATATCTCATCTAACGT+GGG - chr2.3:55871089-55871108 None:intergenic 40.0%
TCAACTTCACCATCAAACTC+CGG + chr2.3:55869559-55869578 MS.gene56036:CDS 40.0%
TCAATAGACCAAACAACTCG+AGG - chr2.3:55870620-55870639 None:intergenic 40.0%
TCATTTAGCATCTGACCTCT+TGG - chr2.3:55871816-55871835 None:intergenic 40.0%
TCCATCAGAAGTCCAATGAT+TGG + chr2.3:55872033-55872052 MS.gene56036:CDS 40.0%
TCGGGAATTAAAGGATTAGG+GGG + chr2.3:55871984-55872003 MS.gene56036:CDS 40.0%
TGGCCCATGAGATCTTATAT+AGG - chr2.3:55871205-55871224 None:intergenic 40.0%
TTGAGCAGACTGGTGAAAAT+TGG - chr2.3:55871712-55871731 None:intergenic 40.0%
TTGTATCTTCGAAGGTTGAG+TGG + chr2.3:55871411-55871430 MS.gene56036:CDS 40.0%
TTGTATTTCTCGCAGCACAA+AGG + chr2.3:55872447-55872466 MS.gene56036:intron 40.0%
! AAAGATCTGAAGCAATCTGG+TGG + chr2.3:55870452-55870471 MS.gene56036:CDS 40.0%
! CTCTATTTTGTCGAGTCTGT+TGG - chr2.3:55872169-55872188 None:intergenic 40.0%
! GATTGGGGATTAGCAAATAC+AGG + chr2.3:55872050-55872069 MS.gene56036:CDS 40.0%
! GCTTTGGCTCAATGTTGATA+GGG - chr2.3:55871683-55871702 None:intergenic 40.0%
! GGAACATATTGGATTGGAGA+TGG + chr2.3:55870166-55870185 MS.gene56036:CDS 40.0%
! GTAATGAAAGGTGTGACACA+CGG + chr2.3:55870341-55870360 MS.gene56036:CDS 40.0%
! TACAAAAGGCGTGTTTCATG+CGG + chr2.3:55871953-55871972 MS.gene56036:CDS 40.0%
! TGCTTTGGCTCAATGTTGAT+AGG - chr2.3:55871684-55871703 None:intergenic 40.0%
! TGGAAAGATCTGAAGCAATC+TGG + chr2.3:55870449-55870468 MS.gene56036:CDS 40.0%
!! GTTCCTCCAAATATTGACTC+TGG - chr2.3:55871483-55871502 None:intergenic 40.0%
!! GTTGAGAAGCATCATATGTC+AGG - chr2.3:55872076-55872095 None:intergenic 40.0%
!! TGACTGACTTGATCAGAGAA+GGG - chr2.3:55872308-55872327 None:intergenic 40.0%
!! TGAGGTGTTGACCAACATTA+TGG - chr2.3:55872214-55872233 None:intergenic 40.0%
!! TTGACTGACTTGATCAGAGA+AGG - chr2.3:55872309-55872328 None:intergenic 40.0%
AAACGTTGCCAGTCATCTTC+AGG + chr2.3:55871011-55871030 MS.gene56036:CDS 45.0%
AACCTCAGCTCTCTTGCATT+TGG - chr2.3:55870057-55870076 None:intergenic 45.0%
AAGGCAAGAGCTCAAAGAAG+AGG + chr2.3:55870540-55870559 MS.gene56036:CDS 45.0%
AATCAAACCTGTGCGAATCG+AGG + chr2.3:55870379-55870398 MS.gene56036:CDS 45.0%
ACAGAAAGGAAGAACCAACC+TGG - chr2.3:55872358-55872377 None:intergenic 45.0%
ACGCCAGAGTCAATATTTGG+AGG + chr2.3:55871477-55871496 MS.gene56036:CDS 45.0%
ATAAGGTTGCCGGAGTTTGA+TGG - chr2.3:55869571-55869590 None:intergenic 45.0%
ATGCAACCTACAGGACCAAA+TGG + chr2.3:55871876-55871895 MS.gene56036:CDS 45.0%
CAAGAGCTCAAAGAAGAGGA+GGG + chr2.3:55870544-55870563 MS.gene56036:CDS 45.0%
CAAGGATCATGAGGCAAGTA+GGG - chr2.3:55869642-55869661 None:intergenic 45.0%
CACACTGATAAGTGGACATC+TGG - chr2.3:55871270-55871289 None:intergenic 45.0%
CCCAATCATTGGACTTCTGA+TGG - chr2.3:55872037-55872056 None:intergenic 45.0%
CTCTGATCAAGTCAGTCAAG+AGG + chr2.3:55872310-55872329 MS.gene56036:CDS 45.0%
CTTCAAACCCTTTCAGCTTC+TGG + chr2.3:55871522-55871541 MS.gene56036:CDS 45.0%
GATGTCCACTTATCAGTGTG+AGG + chr2.3:55871270-55871289 MS.gene56036:intron 45.0%
GGATAGAGGAAAAACCACGA+TGG - chr2.3:55872148-55872167 None:intergenic 45.0%
GTACGTTAGATGAGATACCG+TGG - chr2.3:55870753-55870772 None:intergenic 45.0%
GTACTGCTACTGGATATACC+CGG - chr2.3:55871936-55871955 None:intergenic 45.0%
GTGCATATGCCTGATATGGA+TGG + chr2.3:55870131-55870150 MS.gene56036:CDS 45.0%
GTTTCATGCGGAAGCTACTT+CGG + chr2.3:55871965-55871984 MS.gene56036:CDS 45.0%
TACCAAATGCAAGAGAGCTG+AGG + chr2.3:55870052-55870071 MS.gene56036:CDS 45.0%
TATAAGATCTCATGGGCCAC+TGG + chr2.3:55871206-55871225 MS.gene56036:intron 45.0%
TCAAGGATCATGAGGCAAGT+AGG - chr2.3:55869643-55869662 None:intergenic 45.0%
TGTCCACTTATCAGTGTGAG+GGG + chr2.3:55871272-55871291 MS.gene56036:intron 45.0%
TTGTCGAGTCTGTTGGATAG+AGG - chr2.3:55872162-55872181 None:intergenic 45.0%
TTTCATGCGGAAGCTACTTC+GGG + chr2.3:55871966-55871985 MS.gene56036:CDS 45.0%
TTTCCCTCTTAGATGCACTC+CGG + chr2.3:55871914-55871933 MS.gene56036:CDS 45.0%
! AGCGTATTTCTGAACCAGGT+TGG + chr2.3:55872341-55872360 MS.gene56036:intron 45.0%
! CAAAGAAGCCTCGAGTTGTT+TGG + chr2.3:55870609-55870628 MS.gene56036:CDS 45.0%
! CATGAGCGTATTTCTGAACC+AGG + chr2.3:55872337-55872356 MS.gene56036:CDS 45.0%
! TTAGTGATGTCGGCTGATGA+TGG + chr2.3:55870308-55870327 MS.gene56036:intron 45.0%
!! CTCCGTTTTTGCCTCTATGA+AGG + chr2.3:55869670-55869689 MS.gene56036:CDS 45.0%
!! GACTGACTTGATCAGAGAAG+GGG - chr2.3:55872307-55872326 None:intergenic 45.0%
!! GGAGTTTGATGGTGAAGTTG+AGG - chr2.3:55869560-55869579 None:intergenic 45.0%
!! GGCTGATGATGGAAAAAACG+TGG + chr2.3:55870319-55870338 MS.gene56036:CDS 45.0%
!!! TTTTTTTTTTTTTATTGATT+TGG + chr2.3:55870216-55870235 MS.gene56036:intron 5.0%
AGAACTGGCCAGAAGCTGAA+AGG - chr2.3:55871533-55871552 None:intergenic 50.0%
ATACCCGGAGTGCATCTAAG+AGG - chr2.3:55871921-55871940 None:intergenic 50.0%
ATGGCTCAGTCTCAACCAAG+AGG + chr2.3:55871798-55871817 MS.gene56036:CDS 50.0%
CACCAGTCTGCTCAATCCTT+TGG + chr2.3:55871717-55871736 MS.gene56036:CDS 50.0%
CCACGATGGCCTAAAATCGA+CGG - chr2.3:55872134-55872153 None:intergenic 50.0%
CCTTATCTCCGACCAGTTTC+CGG + chr2.3:55869585-55869604 MS.gene56036:CDS 50.0%
CGACGTGCATATGCCTGATA+TGG + chr2.3:55870127-55870146 MS.gene56036:CDS 50.0%
CTAGACTTTGCACCGAGAAC+TGG - chr2.3:55871548-55871567 None:intergenic 50.0%
GAACTGGCCAGAAGCTGAAA+GGG - chr2.3:55871532-55871551 None:intergenic 50.0%
GAGCCATCTGCATCAACCAA+GGG - chr2.3:55871785-55871804 None:intergenic 50.0%
GCAAGAGCTCAAAGAAGAGG+AGG + chr2.3:55870543-55870562 MS.gene56036:CDS 50.0%
GGCTATCAAGTCACCGCTAT+TGG + chr2.3:55871227-55871246 MS.gene56036:intron 50.0%
GTCCACTTATCAGTGTGAGG+GGG + chr2.3:55871273-55871292 MS.gene56036:intron 50.0%
TACCCGGAGTGCATCTAAGA+GGG - chr2.3:55871920-55871939 None:intergenic 50.0%
TCGCATATTTGCGCTGCCAA+AGG - chr2.3:55871736-55871755 None:intergenic 50.0%
TGACTCTGGCGTACTCATGA+AGG - chr2.3:55871469-55871488 None:intergenic 50.0%
TGAGCCATCTGCATCAACCA+AGG - chr2.3:55871786-55871805 None:intergenic 50.0%
TGCCAAAGGATTGAGCAGAC+TGG - chr2.3:55871722-55871741 None:intergenic 50.0%
TTCAGCTTCTGGCCAGTTCT+CGG + chr2.3:55871533-55871552 MS.gene56036:CDS 50.0%
TTCCCTCTTAGATGCACTCC+GGG + chr2.3:55871915-55871934 MS.gene56036:CDS 50.0%
! AAGCCCTTGGTTGATGCAGA+TGG + chr2.3:55871779-55871798 MS.gene56036:CDS 50.0%
! AAGTCCTGCTGCTTGAAGCT+TGG - chr2.3:55871571-55871590 None:intergenic 50.0%
! ACGTTTTCTCTAGTGAGCCC+AGG - chr2.3:55870997-55871016 None:intergenic 50.0%
! CACGCCTTTTGTACTGCTAC+TGG - chr2.3:55871946-55871965 None:intergenic 50.0%
! TTCAAAGCCTCGATTCGCAC+AGG - chr2.3:55870389-55870408 None:intergenic 50.0%
!!! GATCTCTCGCCGTCGATTTT+AGG + chr2.3:55872122-55872141 MS.gene56036:CDS 50.0%
CACCCCCTCACACTGATAAG+TGG - chr2.3:55871278-55871297 None:intergenic 55.0%
CCGGAAACTGGTCGGAGATA+AGG - chr2.3:55869588-55869607 None:intergenic 55.0%
CTAGCCAAGCTTCAAGCAGC+AGG + chr2.3:55871564-55871583 MS.gene56036:CDS 55.0%
CTGCTGCAAAGAGAAGCCCT+TGG + chr2.3:55871766-55871785 MS.gene56036:CDS 55.0%
CTGGTCGGAGATAAGGTTGC+CGG - chr2.3:55869581-55869600 None:intergenic 55.0%
TATCTCCGACCAGTTTCCGG+CGG + chr2.3:55869588-55869607 MS.gene56036:CDS 55.0%
! AGCGGTGACTTGATAGCCAG+TGG - chr2.3:55871225-55871244 None:intergenic 55.0%
! ATCTGGAGTGTGACTCGAGC+GGG - chr2.3:55871253-55871272 None:intergenic 55.0%
! CATCTGGAGTGTGACTCGAG+CGG - chr2.3:55871254-55871273 None:intergenic 55.0%
! TTCTCGCAGCACAAAGGCGT+TGG + chr2.3:55872453-55872472 MS.gene56036:intron 55.0%
!!! CCGTCGATTTTAGGCCATCG+TGG + chr2.3:55872131-55872150 MS.gene56036:CDS 55.0%
ACAAGTACACGGAGACCCGC+CGG - chr2.3:55869607-55869626 None:intergenic 60.0%
ATCTCCGACCAGTTTCCGGC+GGG + chr2.3:55869589-55869608 MS.gene56036:CDS 60.0%
TGACTCGAGCGGGCCAATAG+CGG - chr2.3:55871243-55871262 None:intergenic 60.0%
GAGACCCGCCGGAAACTGGT+CGG - chr2.3:55869596-55869615 None:intergenic 65.0%
CACGGAGACCCGCCGGAAAC+TGG - chr2.3:55869600-55869619 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 55869550 55872711 55869550 ID=MS.gene56036
chr2.3 mRNA 55869550 55872711 55869550 ID=MS.gene56036.t1;Parent=MS.gene56036
chr2.3 exon 55869550 55869691 55869550 ID=MS.gene56036.t1.exon1;Parent=MS.gene56036.t1
chr2.3 CDS 55869550 55869691 55869550 ID=cds.MS.gene56036.t1;Parent=MS.gene56036.t1
chr2.3 exon 55870051 55870203 55870051 ID=MS.gene56036.t1.exon2;Parent=MS.gene56036.t1
chr2.3 CDS 55870051 55870203 55870051 ID=cds.MS.gene56036.t1;Parent=MS.gene56036.t1
chr2.3 exon 55870312 55870686 55870312 ID=MS.gene56036.t1.exon3;Parent=MS.gene56036.t1
chr2.3 CDS 55870312 55870686 55870312 ID=cds.MS.gene56036.t1;Parent=MS.gene56036.t1
chr2.3 exon 55870956 55871032 55870956 ID=MS.gene56036.t1.exon4;Parent=MS.gene56036.t1
chr2.3 CDS 55870956 55871032 55870956 ID=cds.MS.gene56036.t1;Parent=MS.gene56036.t1
chr2.3 exon 55871402 55872358 55871402 ID=MS.gene56036.t1.exon5;Parent=MS.gene56036.t1
chr2.3 CDS 55871402 55872358 55871402 ID=cds.MS.gene56036.t1;Parent=MS.gene56036.t1
chr2.3 exon 55872685 55872711 55872685 ID=MS.gene56036.t1.exon6;Parent=MS.gene56036.t1
chr2.3 CDS 55872685 55872711 55872685 ID=cds.MS.gene56036.t1;Parent=MS.gene56036.t1
Gene Sequence

>MS.gene56036

ATGTCAACCTCAACTTCACCATCAAACTCCGGCAACCTTATCTCCGACCAGTTTCCGGCGGGTCTCCGTGTACTTGTTGTTGATGATGACCCTACTTGCCTCATGATCCTTGAAAGAATGCTCCGTTTTTGCCTCTATGAAGGTCTTCAATCTTCATCTTTGTTTCACTATTGCCCATCATGAATTAGTGTTAAAAATCTTAACTTTACATCATTTTTTCAACGTTTATGTGCTTATAGATGCAAATTAGTAATACCCTTTTGTTTGATTGAGTTTTTTTATTCAGACCCATTTTTATTTTTAGTTCAGATTCTTGGTTGCAACCATCTTTCTTTTGAATTATGCTTTTGATATGATTTAATATGGTAGATTTGTTTGATAAGTGTTTTTTTCAACTATTGGAATTTATTCCAAAGTTAAAGTTTGAGACTTTAGTATATTGTGTAAGTTTTGTTGTTCACCATTTGATTCTGTTTTGCTTGTTGGGTATGTTTGTTTCAGTTACCAAATGCAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAATAAAAACGGGTTCGACATTGTTTTAAGCGACGTGCATATGCCTGATATGGATGGATTCAAACTTTTGGAACATATTGGATTGGAGATGGATCTTCCTGTTATTAGTAAGCATTGTTTTTTTTTTTTTTTATTGATTTGGATCAGTTGATGCAATATGCAATGACATGAGTTGACATATTTTGTGTGTGCGTGTTTGTGTGAATGTGTTTTAGTGATGTCGGCTGATGATGGAAAAAACGTGGTAATGAAAGGTGTGACACACGGTGCTTGTGATTATCTAATCAAACCTGTGCGAATCGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAATAACTGGAAAGATCTGAAGCAATCTGGTGGATTAGATGAAAGAGATCGAGAAAAAATTGTGTCCACTGATGCTAATTACTCATCTTCAACGAATGAAGGCAAGAGCTCAAAGAAGAGGAGGGATGAAGAAGATGAAGCAGATGATAGGGATGATTGTTCGACGTCAAAGAAGCCTCGAGTTGTTTGGTCTATTGAGCTTCATCAACAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAGTATGTGTCCCTTAATTATGTTATATCCTTGCAAAAATGTTCTCTTTCATCTTTGTTTGTTTTCCACGGTATCTCATCTAACGTACAAACCATTCCCTTAAAGTTTTTCCGAGATATAATCCTTGTGATTCTACAAGATTGTTTTTATCTCTAAATTAGCCCTTTTCCCCCATAGAATCTTAAATATTTCTGCTTGTCTAATTGATTTTTATATGTAATGTTAAGTAAAGTCGTCATCTTATGTTTTCAAAATTGATATTGATATGCAGAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCCAGTCATCTTCAGGTACGATATACTAAAAAGATTATACTTCCTCTATTTTTGTTATTGTTAAGAGTCCCACGTTAGATGAGATATGACCTATAATAAGTTAGTTTAGAAGTGGTGGACGATCCTCATCGTACAAACTGATTTTGTAAGGGTTGAGCAACTGATATTCTAGATGTTATTAGAGCCTATATAAGATCTCATGGGCCACTGGCTATCAAGTCACCGCTATTGGCCCGCTCGAGTCACACTCCAGATGTCCACTTATCAGTGTGAGGGGGTGTGTAAAGTCTAAAGAATCCACCTTGAATGTTAAGAGTTACAGTCATCAACGATATTGCTTGAAGAAGCTAACTTTCTTCATCTGTTTTTTATTTTCTTATACAGAAATACCGTTTGTATCTTCGAAGGTTGAGTGGAGTTTCCCAGCAGCAAAGTAACTTGAATAACTCCTTCATGAGTACGCCAGAGTCAATATTTGGAGGAACCTCCGTAAATGAAATTGATCTTCAAACCCTTTCAGCTTCTGGCCAGTTCTCGGTGCAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTTACAGTCCTGAGAACTCAAAACTAAGATTTGGAGATGGGCAACTGCAACATATGAGCAGCAGTAAACCGGTGAACTTTCTTCACGGAATCCCTATCAACATTGAGCCAAAGCAGTTTGCCAATTTTCACCAGTCTGCTCAATCCTTTGGCAGCGCAAATATGCGAGTCAATGCTTCTGCTGCAAAGAGAAGCCCTTGGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAATGAGAATACAAATTCTCATGCTACAAGGTTTCCATCATCTTTAATGCAACCTACAGGACCAAATGGAATATCAGTCAATAGTTTCCCTCTTAGATGCACTCCGGGTATATCCAGTAGCAGTACAAAAGGCGTGTTTCATGCGGAAGCTACTTCGGGAATTAAAGGATTAGGGGGATTTAGTTATGATGTTTATAATGAACTCCATCAGAAGTCCAATGATTGGGGATTAGCAAATACAGGCCTGACATATGATGCTTCTCAACATGCAAATCCTTTACAAGGCAACATTGATCTCTCGCCGTCGATTTTAGGCCATCGTGGTTTTTCCTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGTCAAGGTGATCACCATAATGTTGGTCAACACCTCAATACAACTTTTGTCGACAATTCATTAAGGGGTAAGAGTGAAAGAATTCCGAGTACAAACATTGAGATCAACCCCTTCTCTGATCAAGTCAGTCAAGAGGATCTCATGAGCGTATTTCTGAACCAGGTTGGTTCTTCCTTTCTGTTGACCCTAAATATTTATGTTTCCTTACTTTTCCTTTATAGACAAATCATTTATTTTCATTTTTTTTTTTTTGTATTTCTCGCAGCACAAAGGCGTTGGACAAGTTGATAATGAGTTTGACTTTGATGGATATTCCGCAGACAACATTCCAGTTTATAACAGATCCTGTTAGCTCTCTTTCTAATCATAGTTGCCAATGTAAATAGTTGGTGTTCCACATGAATCTAATCATCACTCTGCAATTAGCTAGCTCATACACGAGTTTAAATTGTTCAAAATATAGAAATTAGTTTATGTAAAAATTTCAGGCTTCAGGGAGTAGTGTTTATCGTTAA
Protein sequence

>MS.gene56036.t1

MSTSTSPSNSGNLISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNNWKDLKQSGGLDERDREKIVSTDANYSSSTNEGKSSKKRRDEEDEADDRDDCSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNSFMSTPESIFGGTSVNEIDLQTLSASGQFSVQSLAKLQAAGLYSPENSKLRFGDGQLQHMSSSKPVNFLHGIPINIEPKQFANFHQSAQSFGSANMRVNASAAKRSPWLMQMAQSQPRGQMLNENTNSHATRFPSSLMQPTGPNGISVNSFPLRCTPGISSSSTKGVFHAEATSGIKGLGGFSYDVYNELHQKSNDWGLANTGLTYDASQHANPLQGNIDLSPSILGHRGFSSIQQTRQNRDGMSQGDHHNVGQHLNTTFVDNSLRGKSERIPSTNIEINPFSDQVSQEDLMSVFLNQASGSSVYR