Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56232.t1 | XP_003598216.2 | 95.3 | 507 | 23 | 1 | 1 | 506 | 126 | 632 | 1.30E-289 | 1005 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56232.t1 | P80065 | 69.7 | 508 | 150 | 2 | 1 | 504 | 153 | 660 | 1.6e-216 | 753.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56232.t1 | G7IYH0 | 95.3 | 507 | 23 | 1 | 1 | 506 | 126 | 632 | 9.1e-290 | 1005.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050298 | MS.gene56232 | 0.821919 | 3.12E-53 | -1.69E-46 |
MS.gene050584 | MS.gene56232 | 0.832479 | 9.23E-56 | -1.69E-46 |
MS.gene050585 | MS.gene56232 | 0.845988 | 2.88E-59 | -1.69E-46 |
MS.gene050587 | MS.gene56232 | 0.844996 | 5.35E-59 | -1.69E-46 |
MS.gene05143 | MS.gene56232 | 0.82233 | 2.51E-53 | -1.69E-46 |
MS.gene051789 | MS.gene56232 | 0.821703 | 3.51E-53 | -1.69E-46 |
MS.gene052142 | MS.gene56232 | 0.866683 | 2.38E-65 | -1.69E-46 |
MS.gene052187 | MS.gene56232 | 0.816475 | 5.43E-52 | -1.69E-46 |
MS.gene053074 | MS.gene56232 | 0.816138 | 6.45E-52 | -1.69E-46 |
MS.gene053383 | MS.gene56232 | 0.8311 | 2.02E-55 | -1.69E-46 |
MS.gene05456 | MS.gene56232 | 0.810868 | 9.30E-51 | -1.69E-46 |
MS.gene055359 | MS.gene56232 | 0.82723 | 1.75E-54 | -1.69E-46 |
MS.gene058168 | MS.gene56232 | 0.800774 | 1.23E-48 | -1.69E-46 |
MS.gene059006 | MS.gene56232 | 0.813335 | 2.70E-51 | -1.69E-46 |
MS.gene059632 | MS.gene56232 | 0.800238 | 1.58E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56232.t1 | MTR_3g008530 | 95.266 | 507 | 23 | 1 | 1 | 506 | 126 | 632 | 0.0 | 991 |
MS.gene56232.t1 | MTR_4g101630 | 62.525 | 507 | 186 | 3 | 2 | 504 | 23 | 529 | 0.0 | 650 |
MS.gene56232.t1 | MTR_4g101630 | 62.525 | 507 | 186 | 3 | 2 | 504 | 135 | 641 | 0.0 | 649 |
MS.gene56232.t1 | MTR_8g017410 | 45.545 | 505 | 261 | 10 | 2 | 495 | 25 | 526 | 6.34e-147 | 432 |
MS.gene56232.t1 | MTR_8g017410 | 45.545 | 505 | 261 | 10 | 2 | 495 | 71 | 572 | 3.58e-146 | 431 |
MS.gene56232.t1 | MTR_2g099950 | 45.168 | 507 | 264 | 9 | 2 | 497 | 5 | 508 | 1.36e-143 | 422 |
MS.gene56232.t1 | MTR_1g059700 | 45.669 | 508 | 256 | 8 | 2 | 495 | 64 | 565 | 1.03e-142 | 422 |
MS.gene56232.t1 | MTR_2g099950 | 45.168 | 507 | 264 | 9 | 2 | 497 | 68 | 571 | 1.27e-142 | 422 |
MS.gene56232.t1 | MTR_7g105050 | 44.970 | 507 | 260 | 8 | 2 | 495 | 71 | 571 | 1.42e-142 | 422 |
MS.gene56232.t1 | MTR_1g015910 | 42.353 | 510 | 273 | 9 | 2 | 497 | 26 | 528 | 1.10e-135 | 403 |
MS.gene56232.t1 | MTR_1g015910 | 42.690 | 513 | 267 | 10 | 2 | 497 | 69 | 571 | 3.11e-135 | 403 |
MS.gene56232.t1 | MTR_1g015970 | 41.897 | 506 | 277 | 8 | 2 | 495 | 43 | 543 | 9.06e-126 | 378 |
MS.gene56232.t1 | MTR_5g066380 | 40.613 | 522 | 277 | 14 | 2 | 497 | 59 | 573 | 3.50e-121 | 367 |
MS.gene56232.t1 | MTR_1g015980 | 40.856 | 514 | 277 | 14 | 2 | 495 | 43 | 549 | 3.03e-119 | 362 |
MS.gene56232.t1 | MTR_8g017410 | 50.737 | 339 | 161 | 4 | 2 | 335 | 71 | 408 | 6.26e-114 | 343 |
MS.gene56232.t1 | MTR_1g015940 | 37.360 | 447 | 236 | 10 | 8 | 440 | 54 | 470 | 2.68e-88 | 279 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56232.t1 | AT1G62660 | 60.938 | 512 | 190 | 3 | 2 | 503 | 31 | 542 | 0.0 | 656 |
MS.gene56232.t1 | AT1G62660 | 60.938 | 512 | 190 | 3 | 2 | 503 | 129 | 640 | 0.0 | 656 |
MS.gene56232.t1 | AT1G12240 | 60.392 | 510 | 191 | 3 | 2 | 500 | 144 | 653 | 0.0 | 645 |
MS.gene56232.t1 | AT1G62660 | 59.283 | 474 | 183 | 3 | 40 | 503 | 1 | 474 | 0.0 | 583 |
MS.gene56232.t1 | AT1G62660 | 59.283 | 474 | 183 | 3 | 40 | 503 | 1 | 474 | 0.0 | 583 |
MS.gene56232.t1 | AT3G13790 | 44.706 | 510 | 267 | 7 | 2 | 497 | 5 | 513 | 1.42e-143 | 422 |
MS.gene56232.t1 | AT3G13790 | 44.706 | 510 | 267 | 7 | 2 | 497 | 5 | 513 | 1.42e-143 | 422 |
MS.gene56232.t1 | AT3G13790 | 44.706 | 510 | 267 | 7 | 2 | 497 | 5 | 513 | 1.42e-143 | 422 |
MS.gene56232.t1 | AT3G13790 | 44.706 | 510 | 267 | 7 | 2 | 497 | 72 | 580 | 1.02e-142 | 422 |
MS.gene56232.t1 | AT3G13790 | 44.706 | 510 | 267 | 7 | 2 | 497 | 75 | 583 | 1.33e-142 | 422 |
MS.gene56232.t1 | AT1G55120 | 44.250 | 513 | 268 | 11 | 2 | 497 | 23 | 534 | 8.74e-138 | 409 |
MS.gene56232.t1 | AT1G55120 | 44.250 | 513 | 268 | 11 | 2 | 497 | 22 | 533 | 9.65e-138 | 409 |
MS.gene56232.t1 | AT1G55120 | 44.250 | 513 | 268 | 11 | 2 | 497 | 47 | 558 | 2.30e-137 | 409 |
MS.gene56232.t1 | AT3G52600 | 42.830 | 530 | 263 | 11 | 2 | 504 | 17 | 533 | 2.53e-137 | 407 |
MS.gene56232.t1 | AT1G55120 | 44.250 | 513 | 268 | 11 | 2 | 497 | 62 | 573 | 2.72e-137 | 409 |
MS.gene56232.t1 | AT3G52600 | 42.830 | 530 | 263 | 11 | 2 | 504 | 5 | 521 | 2.82e-137 | 407 |
MS.gene56232.t1 | AT3G52600 | 42.830 | 530 | 263 | 11 | 2 | 504 | 71 | 587 | 1.29e-136 | 407 |
MS.gene56232.t1 | AT5G11920 | 43.883 | 515 | 268 | 11 | 2 | 501 | 5 | 513 | 1.84e-133 | 397 |
MS.gene56232.t1 | AT5G11920 | 43.883 | 515 | 268 | 11 | 2 | 501 | 40 | 548 | 3.92e-133 | 397 |
MS.gene56232.t1 | AT2G36190 | 42.690 | 513 | 269 | 10 | 2 | 493 | 73 | 581 | 3.32e-132 | 396 |
MS.gene56232.t1 | AT3G13784 | 40.784 | 510 | 284 | 11 | 2 | 496 | 13 | 519 | 2.78e-126 | 378 |
MS.gene56232.t1 | AT3G13784 | 40.784 | 510 | 284 | 11 | 2 | 496 | 63 | 569 | 2.16e-125 | 378 |
MS.gene56232.t1 | AT3G13784 | 40.784 | 510 | 284 | 11 | 2 | 496 | 66 | 572 | 3.06e-125 | 377 |
MS.gene56232.t1 | AT3G13784 | 40.784 | 510 | 284 | 11 | 2 | 496 | 66 | 572 | 3.41e-125 | 377 |
MS.gene56232.t1 | AT5G11920 | 46.111 | 360 | 180 | 7 | 2 | 352 | 40 | 394 | 2.21e-99 | 306 |
Find 126 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTGATAGAAGTGATTT+TGG | 0.169640 | 3.3:+4276312 | MS.gene56232:CDS |
CTGATCCCCTTCTCCTTGAT+TGG | 0.204499 | 3.3:+4270907 | MS.gene56232:CDS |
TTGTCAAACAACACTGTTCT+TGG | 0.243482 | 3.3:-4271923 | None:intergenic |
TGTAGGTATTGGGTTGCTTT+TGG | 0.245427 | 3.3:+4271337 | MS.gene56232:CDS |
GAAAGTGATGACTTGGAAAA+AGG | 0.261302 | 3.3:+4271449 | MS.gene56232:CDS |
GATTGTATTGGTAAAATAAA+TGG | 0.262959 | 3.3:-4270656 | None:intergenic |
CGAAATCATAATGCTTTATA+CGG | 0.273667 | 3.3:+4270830 | MS.gene56232:CDS |
ACATGTACTAAAGGCTAGTT+TGG | 0.293411 | 3.3:+4271232 | MS.gene56232:CDS |
TTAGAAAGGCGGAAATAAAT+TGG | 0.297460 | 3.3:-4276384 | None:intergenic |
AAAAGGTTGGGCATCTCTTC+AGG | 0.298356 | 3.3:+4271466 | MS.gene56232:CDS |
ACATCCTCAAGTGGGTTATC+AGG | 0.330864 | 3.3:-4271317 | None:intergenic |
GTTCTTTCTTTGATCCAATT+AGG | 0.331089 | 3.3:-4271037 | None:intergenic |
TAACTACTTACATGCGGTTC+CGG | 0.333605 | 3.3:+4271118 | MS.gene56232:CDS |
GGTTTGGACACATCAGTAAA+TGG | 0.337370 | 3.3:+4271197 | MS.gene56232:CDS |
GGAAAATGGAGAGTCCTAAT+TGG | 0.342963 | 3.3:+4271023 | MS.gene56232:CDS |
AATAAACGGGTCAAATGGTT+TGG | 0.347159 | 3.3:+4271181 | MS.gene56232:CDS |
GGATCGGGCCAGATGGAAAA+TGG | 0.363734 | 3.3:+4271009 | MS.gene56232:CDS |
CTGTATGGGGCAACATTTCA+TGG | 0.366572 | 3.3:+4270688 | MS.gene56232:CDS |
TGATCCCCTTCTCCTTGATT+GGG | 0.368754 | 3.3:+4270908 | MS.gene56232:CDS |
TGAATTTGAGATTGAATCAT+TGG | 0.373575 | 3.3:+4276242 | MS.gene56232:CDS |
CCACTTGAGGATGTAGGTAT+TGG | 0.373705 | 3.3:+4271326 | MS.gene56232:CDS |
TACCCAACAGAAGCAATATA+TGG | 0.376551 | 3.3:+4277583 | MS.gene56232:CDS |
GTTCAAATGCCAAATCTTGA+TGG | 0.377231 | 3.3:-4277659 | None:intergenic |
TCAAAGTCTCCATCAAGATT+TGG | 0.384584 | 3.3:+4277650 | MS.gene56232:CDS |
TTTGACCCGTTTATTGAAAC+CGG | 0.387366 | 3.3:-4271173 | None:intergenic |
CTGGAACTAATTTGCTTCAA+TGG | 0.388558 | 3.3:+4271951 | MS.gene56232:CDS |
ACAATCCTGATTCAGCTGTA+TGG | 0.390579 | 3.3:+4270673 | MS.gene56232:CDS |
CACTTGAGGATGTAGGTATT+GGG | 0.396137 | 3.3:+4271327 | MS.gene56232:CDS |
AACTACTTACATGCGGTTCC+GGG | 0.398556 | 3.3:+4271119 | MS.gene56232:CDS |
GGAACTTTGCTACCACAAAC+TGG | 0.402156 | 3.3:-4277094 | None:intergenic |
AGCATTATGATTTCGCCATC+TGG | 0.408188 | 3.3:-4270822 | None:intergenic |
TTGCCCCATACAGCTGAATC+AGG | 0.421776 | 3.3:-4270678 | None:intergenic |
TATCAATGGACATGATTCAT+TGG | 0.425810 | 3.3:+4270721 | MS.gene56232:CDS |
CGGTTCCGGGTACGGGTATG+TGG | 0.425826 | 3.3:+4271132 | MS.gene56232:CDS |
TTACATGCGGTTCCGGGTAC+GGG | 0.426530 | 3.3:+4271125 | MS.gene56232:CDS |
CGCCTTTCTAATACTAGTCT+TGG | 0.432810 | 3.3:+4276396 | MS.gene56232:CDS |
CTTACATGCGGTTCCGGGTA+CGG | 0.432880 | 3.3:+4271124 | MS.gene56232:CDS |
CAATCCTGATTCAGCTGTAT+GGG | 0.436296 | 3.3:+4270674 | MS.gene56232:CDS |
GCTCCATATATTGCTTCTGT+TGG | 0.438108 | 3.3:-4277586 | None:intergenic |
AGAGTGGATAGTTATGCAAT+TGG | 0.438871 | 3.3:+4271263 | MS.gene56232:CDS |
TTTACCCGGTTTCAATAAAC+GGG | 0.441993 | 3.3:+4271168 | MS.gene56232:CDS |
ATCCAACCACTGGTTGGATC+GGG | 0.444877 | 3.3:+4270994 | MS.gene56232:CDS |
CCCACCTGCCATTGGTTCAA+AGG | 0.446762 | 3.3:+4270962 | MS.gene56232:CDS |
TTGCACTTGCACGTAGTTGT+CGG | 0.448664 | 3.3:-4270859 | None:intergenic |
GGTTCGATATCAACGGTGTA+TGG | 0.454622 | 3.3:+4270778 | MS.gene56232:CDS |
GACAATATAGATTGTGGAAG+AGG | 0.455337 | 3.3:+4276288 | MS.gene56232:CDS |
AAAATTATCAATGAGGGTCT+TGG | 0.456340 | 3.3:+4277132 | MS.gene56232:CDS |
TGTCATTGACTTTGATCAAA+CGG | 0.457983 | 3.3:-4277703 | None:intergenic |
GTTTCAATAAACGGGTCAAA+TGG | 0.458831 | 3.3:+4271176 | MS.gene56232:CDS |
GATCCAACCACTGGTTGGAT+CGG | 0.459335 | 3.3:+4270993 | MS.gene56232:CDS |
AAGCTCTCTACTTCTTCTAC+TGG | 0.461924 | 3.3:-4271974 | None:intergenic |
CTCCATATATTGCTTCTGTT+GGG | 0.471332 | 3.3:-4277585 | None:intergenic |
TGACTTTGATCAAACGGAAA+GGG | 0.472829 | 3.3:-4277697 | None:intergenic |
CTGCATATTTAACCCAATCA+AGG | 0.474527 | 3.3:-4270920 | None:intergenic |
TTGTCGGGTTCCATGGCAAT+GGG | 0.475652 | 3.3:-4270753 | None:intergenic |
ATTGAATCATTGGCATCTAA+AGG | 0.477413 | 3.3:+4276252 | MS.gene56232:CDS |
TGGCAAAAGCGTGGCGGACC+CGG | 0.478386 | 3.3:-4270802 | None:intergenic |
GAGAAGGGGATCAGATAAGT+TGG | 0.488463 | 3.3:-4270898 | None:intergenic |
TTCAATGGAACAACAGAGCC+AGG | 0.497214 | 3.3:-4272034 | None:intergenic |
CTTTGAACCAATGGCAGGTG+GGG | 0.497315 | 3.3:-4270961 | None:intergenic |
ATGGGGTCATGCTGTATCAA+TGG | 0.499202 | 3.3:+4270707 | MS.gene56232:CDS |
TTGATATCGAACCATTTGTC+GGG | 0.500043 | 3.3:-4270768 | None:intergenic |
GAACCATTTGTCGGGTTCCA+TGG | 0.501181 | 3.3:-4270760 | None:intergenic |
CAAAGCTCTCAATAATTGAA+TGG | 0.505751 | 3.3:-4277525 | None:intergenic |
GAGTGGATAGTTATGCAATT+GGG | 0.507560 | 3.3:+4271264 | MS.gene56232:CDS |
GATATCAACGGTGTATGGAC+CGG | 0.513825 | 3.3:+4270783 | MS.gene56232:CDS |
TTGCCATGGAACCCGACAAA+TGG | 0.514782 | 3.3:+4270757 | MS.gene56232:CDS |
ACAAGTTAAACATGTACTAA+AGG | 0.514996 | 3.3:+4271223 | MS.gene56232:CDS |
GTGTTGTTTGACAAGAAGAC+TGG | 0.516483 | 3.3:+4271932 | MS.gene56232:CDS |
GGATCAAAGAAAGAACAAAC+AGG | 0.522777 | 3.3:+4271044 | MS.gene56232:CDS |
ATATGCAGATAACCCAATCA+TGG | 0.523909 | 3.3:+4270935 | MS.gene56232:CDS |
GTTGATATCGAACCATTTGT+CGG | 0.528343 | 3.3:-4270769 | None:intergenic |
TTTAGTACATGTTTAACTTG+TGG | 0.529509 | 3.3:-4271221 | None:intergenic |
TACGGGTATGTGGGAATGTG+TGG | 0.530308 | 3.3:+4271142 | MS.gene56232:CDS |
TGATTCCGAAAGTGATGACT+TGG | 0.533518 | 3.3:+4271442 | MS.gene56232:CDS |
TACCAAGACTAGTATTAGAA+AGG | 0.534851 | 3.3:-4276398 | None:intergenic |
CAGCTGAATCAGGATTGTAT+TGG | 0.537964 | 3.3:-4270668 | None:intergenic |
TTTGTCGGGTTCCATGGCAA+TGG | 0.539498 | 3.3:-4270754 | None:intergenic |
ATTTAACCCAATCAAGGAGA+AGG | 0.540671 | 3.3:-4270914 | None:intergenic |
TTTAACCCAATCAAGGAGAA+GGG | 0.543585 | 3.3:-4270913 | None:intergenic |
TTCAAAATTTATGAAGTCTG+TGG | 0.544236 | 3.3:-4271087 | None:intergenic |
GCAATTGCTAGAATACCAAA+TGG | 0.545874 | 3.3:-4276336 | None:intergenic |
TGTATGGGGCAACATTTCAT+GGG | 0.549693 | 3.3:+4270689 | MS.gene56232:CDS |
TCCGTGATCCAACCACTGGT+TGG | 0.551226 | 3.3:+4270988 | MS.gene56232:CDS |
GGCCCGATCCAACCAGTGGT+TGG | 0.551925 | 3.3:-4270996 | None:intergenic |
CCTTTGAACCAATGGCAGGT+GGG | 0.552079 | 3.3:-4270962 | None:intergenic |
TCCTTTGAACCAATGGCAGG+TGG | 0.554708 | 3.3:-4270963 | None:intergenic |
GACTTTGATCAAACGGAAAG+GGG | 0.554915 | 3.3:-4277696 | None:intergenic |
GATTTCCGTGATCCAACCAC+TGG | 0.560137 | 3.3:+4270984 | MS.gene56232:CDS |
AGGGGATCAGATAAGTTGGC+AGG | 0.560256 | 3.3:-4270894 | None:intergenic |
TGTTTGGTGCAGATCATCAA+AGG | 0.560317 | 3.3:+4277054 | MS.gene56232:intron |
GCTCTACCTTCCCATTGCCA+TGG | 0.560952 | 3.3:+4270743 | MS.gene56232:CDS |
GTCCATTATTTCACATGGGA+TGG | 0.561319 | 3.3:+4270631 | None:intergenic |
TTTGAACCAATGGCAGGTGG+GGG | 0.562739 | 3.3:-4270960 | None:intergenic |
ACGGAAATCCTTTGAACCAA+TGG | 0.563727 | 3.3:-4270970 | None:intergenic |
AGCAATGACAATATAGATTG+TGG | 0.569767 | 3.3:+4276282 | MS.gene56232:CDS |
ACTGGTTGGATCGGGCCAGA+TGG | 0.571309 | 3.3:+4271002 | MS.gene56232:CDS |
GAAATCATAATGCTTTATAC+GGG | 0.576553 | 3.3:+4270831 | MS.gene56232:CDS |
TTGACCCGTTTATTGAAACC+GGG | 0.578552 | 3.3:-4271172 | None:intergenic |
TCCAACCAGTGGTTGGATCA+CGG | 0.579181 | 3.3:-4270989 | None:intergenic |
AAATCCTTTGAACCAATGGC+AGG | 0.580312 | 3.3:-4270966 | None:intergenic |
CATTCCCACATACCCGTACC+CGG | 0.580324 | 3.3:-4271137 | None:intergenic |
GGTTCCGGGTACGGGTATGT+GGG | 0.580945 | 3.3:+4271133 | MS.gene56232:CDS |
GATAACCCACTTGAGGATGT+AGG | 0.593078 | 3.3:+4271320 | MS.gene56232:CDS |
ATATCAACGGTGTATGGACC+GGG | 0.597914 | 3.3:+4270784 | MS.gene56232:CDS |
CCAATACCTACATCCTCAAG+TGG | 0.599703 | 3.3:-4271326 | None:intergenic |
ATTATTGAGAGCTTTGCTCA+AGG | 0.599784 | 3.3:+4277532 | MS.gene56232:CDS |
GTTGCGTGACTAATGTTCAA+TGG | 0.599849 | 3.3:-4272049 | None:intergenic |
TTGACTTTGATCAAACGGAA+AGG | 0.605339 | 3.3:-4277698 | None:intergenic |
ATCTGGCCCGATCCAACCAG+TGG | 0.607994 | 3.3:-4271000 | None:intergenic |
CAGTGATGAATATGAAGTAG+TGG | 0.608418 | 3.3:+4272006 | MS.gene56232:CDS |
TTCGCCATCTGGCAAAAGCG+TGG | 0.616147 | 3.3:-4270811 | None:intergenic |
CGGGTTCCATGGCAATGGGA+AGG | 0.622703 | 3.3:-4270749 | None:intergenic |
TTAACCCAATCAAGGAGAAG+GGG | 0.624987 | 3.3:-4270912 | None:intergenic |
GATTCCTGATAACCCACTTG+AGG | 0.636617 | 3.3:+4271313 | MS.gene56232:CDS |
CAAGACTAGTATTAGAAAGG+CGG | 0.645701 | 3.3:-4276395 | None:intergenic |
AATCCTGATTCAGCTGTATG+GGG | 0.647899 | 3.3:+4270675 | MS.gene56232:CDS |
GACAAATGGTTCGATATCAA+CGG | 0.658649 | 3.3:+4270771 | MS.gene56232:CDS |
AAATGATAACTACTTACATG+CGG | 0.658777 | 3.3:+4271112 | MS.gene56232:CDS |
TATGAAGTAGTGGTTACACC+TGG | 0.670256 | 3.3:+4272016 | MS.gene56232:CDS |
GAACATTAGTCACGCAACAC+AGG | 0.670928 | 3.3:+4272054 | MS.gene56232:CDS |
ATTGAGAGCTTTGCTCAAGG+AGG | 0.675715 | 3.3:+4277535 | MS.gene56232:CDS |
GCCATCTGGCAAAAGCGTGG+CGG | 0.676719 | 3.3:-4270808 | None:intergenic |
TAGTTTGGATGATACAAGAG+TGG | 0.691956 | 3.3:+4271247 | MS.gene56232:CDS |
GTATGGGGCAACATTTCATG+GGG | 0.697118 | 3.3:+4270690 | MS.gene56232:CDS |
CAATACCTACATCCTCAAGT+GGG | 0.706008 | 3.3:-4271325 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 4270645 | 4277723 | 4270645 | ID=MS.gene56232 |
chr3.3 | mRNA | 4270645 | 4277723 | 4270645 | ID=MS.gene56232.t1;Parent=MS.gene56232 |
chr3.3 | exon | 4270645 | 4271487 | 4270645 | ID=MS.gene56232.t1.exon1;Parent=MS.gene56232.t1 |
chr3.3 | CDS | 4270645 | 4271487 | 4270645 | ID=cds.MS.gene56232.t1;Parent=MS.gene56232.t1 |
chr3.3 | exon | 4271917 | 4272075 | 4271917 | ID=MS.gene56232.t1.exon2;Parent=MS.gene56232.t1 |
chr3.3 | CDS | 4271917 | 4272075 | 4271917 | ID=cds.MS.gene56232.t1;Parent=MS.gene56232.t1 |
chr3.3 | exon | 4276228 | 4276454 | 4276228 | ID=MS.gene56232.t1.exon3;Parent=MS.gene56232.t1 |
chr3.3 | CDS | 4276228 | 4276454 | 4276228 | ID=cds.MS.gene56232.t1;Parent=MS.gene56232.t1 |
chr3.3 | exon | 4277066 | 4277153 | 4277066 | ID=MS.gene56232.t1.exon4;Parent=MS.gene56232.t1 |
chr3.3 | CDS | 4277066 | 4277153 | 4277066 | ID=cds.MS.gene56232.t1;Parent=MS.gene56232.t1 |
chr3.3 | exon | 4277520 | 4277723 | 4277520 | ID=MS.gene56232.t1.exon5;Parent=MS.gene56232.t1 |
chr3.3 | CDS | 4277520 | 4277723 | 4277520 | ID=cds.MS.gene56232.t1;Parent=MS.gene56232.t1 |
Gene Sequence |
Protein sequence |