AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56616

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56616.t1 MTR_2g072240 78.968 504 50 2 1 504 1 448 0.0 798
MS.gene56616.t1 MTR_6g034190 62.257 514 181 6 1 504 1 511 0.0 611
MS.gene56616.t1 MTR_2g070780 50.427 351 136 6 1 329 1 335 8.05e-104 315
MS.gene56616.t1 MTR_2g071700 50.311 322 147 3 17 327 18 337 4.32e-99 302
MS.gene56616.t1 MTR_2g071720 60.428 187 52 2 334 504 1 181 4.09e-69 219
MS.gene56616.t1 MTR_2g070660 39.024 205 89 4 1 201 1 173 2.10e-35 130
MS.gene56616.t1 MTR_2g070820 56.757 111 39 2 277 378 1 111 3.61e-30 114
MS.gene56616.t1 MTR_0049s0110 22.955 440 273 13 17 451 8 386 2.83e-18 87.4
MS.gene56616.t1 MTR_2g091145 21.957 460 272 12 12 451 16 408 5.37e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56616.t1 AT1G80960 24.336 452 278 15 17 451 50 454 6.29e-17 84.0
MS.gene56616.t1 AT1G80960 24.336 452 278 15 17 451 50 454 6.29e-17 84.0
MS.gene56616.t1 AT1G80960 24.336 452 278 15 17 451 50 454 6.29e-17 84.0
MS.gene56616.t1 AT1G80960 24.236 458 283 15 11 451 5 415 6.59e-17 83.6
MS.gene56616.t1 AT1G80960 23.937 447 262 15 17 451 50 430 1.67e-15 79.3
MS.gene56616.t1 AT1G80960 27.891 294 170 9 17 303 50 308 1.31e-14 76.3
MS.gene56616.t1 AT3G58860 21.336 464 263 16 12 440 1 397 8.46e-12 67.8

Find 88 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCGTTGGAAAACAATT+TGG 0.181855 2.1:-26549361 MS.gene56616:CDS
AATGGTGATTGGACAAAATT+TGG 0.227687 2.1:-26548614 MS.gene56616:CDS
GAGGAGTATATTTGACAATT+TGG 0.237441 2.1:-26547855 MS.gene56616:CDS
TCAAAACATGGTGGGGATTA+GGG 0.259141 2.1:+26548507 None:intergenic
TACGGATAACATGGAGATTT+GGG 0.266624 2.1:+26548228 None:intergenic
TTCAAAACATGGTGGGGATT+AGG 0.267252 2.1:+26548506 None:intergenic
TTTGAAGATTCTTTAGTTGA+TGG 0.270378 2.1:+26547759 None:intergenic
AATGATCTACAAAATATTAA+TGG 0.277568 2.1:-26548632 MS.gene56616:CDS
CAATTTGTTCTAGGTCAATA+TGG 0.281608 2.1:-26547515 MS.gene56616:intron
ACGATTTCAACATTTCTCTT+TGG 0.320819 2.1:+26549312 None:intergenic
CGTACCCAGGAGTCTTGTTT+TGG 0.327329 2.1:-26547441 MS.gene56616:CDS
TTTGGATCCAATTGCAAAAT+CGG 0.332227 2.1:-26548813 MS.gene56616:CDS
GCAATGTATTCTAGAAAATA+TGG 0.333077 2.1:-26547178 MS.gene56616:CDS
AAACATCAAAAGGCATAAAA+AGG 0.342778 2.1:+26548585 None:intergenic
ATACGGATAACATGGAGATT+TGG 0.343036 2.1:+26548227 None:intergenic
GCTAGGAAGCTCTTCACCTT+AGG 0.344889 2.1:+26547128 None:intergenic
GGAGAAAGAAGTGAGAGATA+TGG 0.349881 2.1:-26549483 MS.gene56616:CDS
AGTTGCTACAACTTCATTCC+AGG 0.354639 2.1:+26547261 None:intergenic
GACAATTTAAAAGAACGCTT+TGG 0.366399 2.1:+26547220 None:intergenic
AGGGGTATTAAACGTTTCAT+TGG 0.368320 2.1:-26548666 MS.gene56616:CDS
AACATTGAAGTCATTGAGAT+TGG 0.370570 2.1:-26548290 MS.gene56616:CDS
AATGCATTCGCATATTTAAG+AGG 0.372128 2.1:+26548836 None:intergenic
GTTCTCACAGCATCGGTTGC+CGG 0.374488 2.1:+26549395 None:intergenic
ACAATTTAAAAGAACGCTTT+GGG 0.376169 2.1:+26547221 None:intergenic
GTCAAGTACTTAATATTAAA+CGG 0.383839 2.1:-26547328 MS.gene56616:CDS
TGCGAAGCATTGCCAATTCA+AGG 0.385381 2.1:+26549249 None:intergenic
CTAGGAAGCTCTTCACCTTA+GGG 0.401717 2.1:+26547129 None:intergenic
AACTAAAGTCTCTTTGCATA+AGG 0.403491 2.1:-26547384 MS.gene56616:CDS
ACTAAAGTCTCTTTGCATAA+GGG 0.406294 2.1:-26547383 MS.gene56616:CDS
TTCTATTATTTGTAAAATCT+AGG 0.408559 2.1:+26547816 None:intergenic
GAATCTTCAAATAAATAATC+AGG 0.416291 2.1:-26547747 MS.gene56616:intron
GTGCAAGCGGGGACGTTGTA+AGG 0.417346 2.1:-26548712 MS.gene56616:CDS
ATTGGCAATGCTTCGCAAAC+AGG 0.418348 2.1:-26549243 MS.gene56616:intron
AAATGTTATTTATTTGGAGA+TGG 0.420199 2.1:-26548392 MS.gene56616:CDS
TACAAAATATTAATGGTGAT+TGG 0.421056 2.1:-26548625 MS.gene56616:CDS
TTCTATAGTTTCTTTCCTAC+CGG 0.425606 2.1:-26549414 MS.gene56616:CDS
AGGGATATTGTTGAAATTTG+CGG 0.426435 2.1:-26548164 MS.gene56616:CDS
ATTTAAAATATTTGAGACTT+GGG 0.433261 2.1:+26548354 None:intergenic
AAGATTCTTTAGTTGATGGC+TGG 0.437082 2.1:+26547763 None:intergenic
AATGTTATTTATTTGGAGAT+GGG 0.440071 2.1:-26548391 MS.gene56616:CDS
AATTTAAAATATTTGAGACT+TGG 0.442943 2.1:+26548353 None:intergenic
TTATGCAAAGAGACTTTAGT+TGG 0.458307 2.1:+26547386 None:intergenic
AAACTAGTTAAAACATCAAA+AGG 0.466646 2.1:+26548575 None:intergenic
TTATAGAGAATATTACAATC+TGG 0.473251 2.1:-26547300 MS.gene56616:CDS
TTGTCCTTCGATCTTAAACC+TGG 0.479119 2.1:-26547202 MS.gene56616:CDS
TGAAGAAACTACTAGAGAAA+GGG 0.486851 2.1:-26548685 MS.gene56616:CDS
CTAGTGTGCTTTCCCATCGT+TGG 0.491334 2.1:-26549373 MS.gene56616:CDS
CTTTGCATAAGGGGATATAC+AGG 0.492384 2.1:-26547373 MS.gene56616:CDS
TTTCTAGAATACATTGCTCC+AGG 0.492568 2.1:+26547184 None:intergenic
GGTAGGAAAGAAACTATAGA+AGG 0.496493 2.1:+26549416 None:intergenic
TCAATTATTGATGATCATAT+CGG 0.508163 2.1:-26548776 MS.gene56616:CDS
ATGAAGAAACTACTAGAGAA+AGG 0.519391 2.1:-26548686 MS.gene56616:CDS
CATTGCAAATACGGATAACA+TGG 0.521568 2.1:+26548219 None:intergenic
CTAAAGTCTCTTTGCATAAG+GGG 0.527260 2.1:-26547382 MS.gene56616:CDS
TGTTAGAGAGTTGTGCAAGC+GGG 0.530974 2.1:-26548724 MS.gene56616:CDS
ATCTTCATTATTACATACAA+TGG 0.531091 2.1:+26548265 None:intergenic
ATGTTATTTATTTGGAGATG+GGG 0.532647 2.1:-26548390 MS.gene56616:CDS
TAAAATCTAGGTCGAGACAG+AGG 0.542160 2.1:+26547828 None:intergenic
TGCTCCAGGTTTAAGATCGA+AGG 0.542444 2.1:+26547198 None:intergenic
TTTGCCAAAACAAGACTCCT+GGG 0.556571 2.1:+26547437 None:intergenic
ATGGATTACATTTACAATGG+TGG 0.558749 2.1:-26547496 MS.gene56616:CDS
ATATACTCCTCATGCAACCT+CGG 0.564140 2.1:+26547867 None:intergenic
CAAAACATGGTGGGGATTAG+GGG 0.565200 2.1:+26548508 None:intergenic
ATAGAAGGTAGAAACACATC+AGG 0.568075 2.1:+26549431 None:intergenic
AAGAGTGTTCAAAACATGGT+GGG 0.569522 2.1:+26548499 None:intergenic
CAAAACAAGACTCCTGGGTA+CGG 0.587616 2.1:+26547442 None:intergenic
AGGTTCGCCGAGGTTGCATG+AGG 0.599881 2.1:-26547874 MS.gene56616:CDS
AGAGTGTTCAAAACATGGTG+GGG 0.602712 2.1:+26548500 None:intergenic
GAAGAAACTACTAGAGAAAG+GGG 0.605742 2.1:-26548684 MS.gene56616:CDS
ACAAGTGGGTAACAACCCTA+AGG 0.616412 2.1:-26547144 MS.gene56616:CDS
GAGTAAGAGTGTTCAAAACA+TGG 0.616962 2.1:+26548495 None:intergenic
AATATGGATTACATTTACAA+TGG 0.619659 2.1:-26547499 MS.gene56616:CDS
CACACTAGTTCTCACAGCAT+CGG 0.619870 2.1:+26549388 None:intergenic
GTTAGAGAGTTGTGCAAGCG+GGG 0.626391 2.1:-26548723 MS.gene56616:CDS
TCACAGCATCGGTTGCCGGT+AGG 0.628187 2.1:+26549399 None:intergenic
CGGGAGGCATTTAGCAACAA+GGG 0.628806 2.1:-26548183 MS.gene56616:CDS
GATATTGTTGAAATTTGCGG+TGG 0.630343 2.1:-26548161 MS.gene56616:CDS
AATAATTGATTTCATCAACA+AGG 0.634191 2.1:+26548790 None:intergenic
AAAATCTAGGTCGAGACAGA+GGG 0.634478 2.1:+26547829 None:intergenic
ATGTTAGAGAGTTGTGCAAG+CGG 0.639861 2.1:-26548725 MS.gene56616:CDS
TCGGGAGGCATTTAGCAACA+AGG 0.641215 2.1:-26548184 MS.gene56616:CDS
CAAGCGGGGACGTTGTAAGG+TGG 0.656244 2.1:-26548709 MS.gene56616:CDS
TAAGAGTGTTCAAAACATGG+TGG 0.660999 2.1:+26548498 None:intergenic
AATGCTTGTTTACCGTACCC+AGG 0.661784 2.1:-26547454 MS.gene56616:CDS
TGCATAAGGGGATATACAGG+TGG 0.667384 2.1:-26547370 MS.gene56616:CDS
TGGTAAGTGACACACCGACA+CGG 0.686268 2.1:+26547406 None:intergenic
ACGGATAACATGGAGATTTG+GGG 0.692120 2.1:+26548229 None:intergenic
ATGTATTCTAGAAAATATGG+TGG 0.699813 2.1:-26547175 MS.gene56616:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGAAAATTACAATA+GGG + chr2.1:26548694-26548713 None:intergenic 10.0%
!! TAAATTATGAAAATTACAAT+AGG + chr2.1:26548695-26548714 None:intergenic 10.0%
!!! AAATAAATAACATTTTTCAA+GGG + chr2.1:26548241-26548260 None:intergenic 10.0%
!!! TAAATATAGTTTTTAACATA+TGG + chr2.1:26548937-26548956 None:intergenic 10.0%
!! AAGTTATTGACATAAATTAT+TGG + chr2.1:26548668-26548687 None:intergenic 15.0%
!! AATGATCTACAAAATATTAA+TGG - chr2.1:26548006-26548025 MS.gene56616:intron 15.0%
!! AGTTATTGACATAAATTATT+GGG + chr2.1:26548667-26548686 None:intergenic 15.0%
!! TATTAATCTAATTGTAGTAT+TGG + chr2.1:26547584-26547603 None:intergenic 15.0%
!! TTCTATTATTTGTAAAATCT+AGG + chr2.1:26548825-26548844 None:intergenic 15.0%
!!! AATTTAAAATATTTGAGACT+TGG + chr2.1:26548288-26548307 None:intergenic 15.0%
!!! ATTAATATTTTGTAGATCAT+TGG + chr2.1:26548007-26548026 None:intergenic 15.0%
!!! ATTTAAAATATTTGAGACTT+GGG + chr2.1:26548287-26548306 None:intergenic 15.0%
!!! CAAATAAATAACATTTTTCA+AGG + chr2.1:26548242-26548261 None:intergenic 15.0%
!!! CATCTATTTTATTACAAAAA+GGG + chr2.1:26547718-26547737 None:intergenic 15.0%
!!! CTTGAAAAATGTTATTTATT+TGG - chr2.1:26548240-26548259 MS.gene56616:CDS 15.0%
!!! TCATCTATTTTATTACAAAA+AGG + chr2.1:26547719-26547738 None:intergenic 15.0%
!!! TTTTGATTTGATTTTTTTCT+TGG - chr2.1:26547525-26547544 MS.gene56616:intron 15.0%
!! AAACTAGTTAAAACATCAAA+AGG + chr2.1:26548066-26548085 None:intergenic 20.0%
!! ATCTTCATTATTACATACAA+TGG + chr2.1:26548376-26548395 None:intergenic 20.0%
!! GAATCTTCAAATAAATAATC+AGG - chr2.1:26548891-26548910 MS.gene56616:intron 20.0%
!! GTCAAGTACTTAATATTAAA+CGG - chr2.1:26549310-26549329 MS.gene56616:CDS 20.0%
!! TACAAAATATTAATGGTGAT+TGG - chr2.1:26548013-26548032 MS.gene56616:intron 20.0%
!! TTATAGAGAATATTACAATC+TGG - chr2.1:26549338-26549357 MS.gene56616:CDS 20.0%
!! TTGAAGAAAAAAACATTTCA+TGG + chr2.1:26549106-26549125 None:intergenic 20.0%
!! TTGATTAACTGGAATTAATA+AGG - chr2.1:26548590-26548609 MS.gene56616:CDS 20.0%
!!! AAATGTTATTTATTTGGAGA+TGG - chr2.1:26548246-26548265 MS.gene56616:CDS 20.0%
!!! AATAATTGATTTCATCAACA+AGG + chr2.1:26547851-26547870 None:intergenic 20.0%
!!! AATATGGATTACATTTACAA+TGG - chr2.1:26549139-26549158 MS.gene56616:intron 20.0%
!!! AATGTTATTTATTTGGAGAT+GGG - chr2.1:26548247-26548266 MS.gene56616:CDS 20.0%
!!! TCAATTATTGATGATCATAT+CGG - chr2.1:26547862-26547881 MS.gene56616:CDS 20.0%
!!! TGATGTTTTAACTAGTTTTA+AGG - chr2.1:26548068-26548087 MS.gene56616:intron 20.0%
!!! TTTAACTAGTTTTAAGGTTT+TGG - chr2.1:26548074-26548093 MS.gene56616:intron 20.0%
!!! TTTTTTCTTCAATTTGTTCT+AGG - chr2.1:26549114-26549133 MS.gene56616:intron 20.0%
! ACAAGAACAAATTACTTCAT+AGG + chr2.1:26548639-26548658 None:intergenic 25.0%
! ACAATTTAAAAGAACGCTTT+GGG + chr2.1:26549420-26549439 None:intergenic 25.0%
! CAATAGTTAGGTTAATCATT+TGG - chr2.1:26547628-26547647 MS.gene56616:intron 25.0%
! CATAGATACATTTGATTAAC+TGG - chr2.1:26548579-26548598 MS.gene56616:CDS 25.0%
! TTACATGTGTTAAATCATAC+AGG - chr2.1:26548964-26548983 MS.gene56616:intron 25.0%
! TTTGAAGATTCTTTAGTTGA+TGG + chr2.1:26548882-26548901 None:intergenic 25.0%
!! AAACATCAAAAGGCATAAAA+AGG + chr2.1:26548056-26548075 None:intergenic 25.0%
!! ATCTAATTGTAGTATTGGAA+AGG + chr2.1:26547579-26547598 None:intergenic 25.0%
!! ATGTATTCTAGAAAATATGG+TGG - chr2.1:26549463-26549482 MS.gene56616:CDS 25.0%
!! ATGTTATTTATTTGGAGATG+GGG - chr2.1:26548248-26548267 MS.gene56616:CDS 25.0%
!! GCAATGTATTCTAGAAAATA+TGG - chr2.1:26549460-26549479 MS.gene56616:CDS 25.0%
!! TAAATATGCGAATGCATTTT+TGG - chr2.1:26547807-26547826 MS.gene56616:CDS 25.0%
!! TTTTCACATCATTGCAAATA+CGG + chr2.1:26548431-26548450 None:intergenic 25.0%
!!! AAACTATTGACATTGATTCA+TGG + chr2.1:26548549-26548568 None:intergenic 25.0%
!!! AACTATTGACATTGATTCAT+GGG + chr2.1:26548548-26548567 None:intergenic 25.0%
!!! ATGAAGTAATTTGTTCTTGT+TGG - chr2.1:26548639-26548658 MS.gene56616:CDS 25.0%
!!! CAATATGTCCTTATTTTCTT+AGG - chr2.1:26548744-26548763 MS.gene56616:CDS 25.0%
!!! GAATATTACAATCTGGTTTT+TGG - chr2.1:26549345-26549364 MS.gene56616:CDS 25.0%
AACATTGAAGTCATTGAGAT+TGG - chr2.1:26548348-26548367 MS.gene56616:CDS 30.0%
AACTAAAGTCTCTTTGCATA+AGG - chr2.1:26549254-26549273 MS.gene56616:CDS 30.0%
AATGCATTCGCATATTTAAG+AGG + chr2.1:26547805-26547824 None:intergenic 30.0%
AATGGTGATTGGACAAAATT+TGG - chr2.1:26548024-26548043 MS.gene56616:intron 30.0%
ACGATTTCAACATTTCTCTT+TGG + chr2.1:26547329-26547348 None:intergenic 30.0%
ACTAAAGTCTCTTTGCATAA+GGG - chr2.1:26549255-26549274 MS.gene56616:CDS 30.0%
ACTTGGAATTAGATTCTCTA+TGG + chr2.1:26547687-26547706 None:intergenic 30.0%
AGGGATATTGTTGAAATTTG+CGG - chr2.1:26548474-26548493 MS.gene56616:CDS 30.0%
ATAAATAATCAGGTGCGTTT+AGG - chr2.1:26548901-26548920 MS.gene56616:intron 30.0%
ATGAAGAAACTACTAGAGAA+AGG - chr2.1:26547952-26547971 MS.gene56616:intron 30.0%
CAAAAAGGGAAGTAAAAACT+TGG + chr2.1:26547704-26547723 None:intergenic 30.0%
GACAATTTAAAAGAACGCTT+TGG + chr2.1:26549421-26549440 None:intergenic 30.0%
GCAGTGATATTTCAATAGTT+AGG - chr2.1:26547616-26547635 MS.gene56616:intron 30.0%
TAAAAATAAGCGCCTTGAAT+TGG - chr2.1:26547377-26547396 MS.gene56616:CDS 30.0%
TCATAGGCAAATCAAAACAT+TGG + chr2.1:26548623-26548642 None:intergenic 30.0%
TGAAGAAACTACTAGAGAAA+GGG - chr2.1:26547953-26547972 MS.gene56616:intron 30.0%
TGCAATGATGTGAAAAATCT+CGG - chr2.1:26548435-26548454 MS.gene56616:CDS 30.0%
TTATGCAAAGAGACTTTAGT+TGG + chr2.1:26549255-26549274 None:intergenic 30.0%
TTCTATAGTTTCTTTCCTAC+CGG - chr2.1:26547224-26547243 MS.gene56616:CDS 30.0%
TTTGGATCCAATTGCAAAAT+CGG - chr2.1:26547825-26547844 MS.gene56616:CDS 30.0%
! AATTGTAGTATTGGAAAGGA+TGG + chr2.1:26547575-26547594 None:intergenic 30.0%
! ATCTGTCATGCACAAATTTT+AGG + chr2.1:26547781-26547800 None:intergenic 30.0%
! ATGGATTACATTTACAATGG+TGG - chr2.1:26549142-26549161 MS.gene56616:intron 30.0%
! CAATTTGTTCTAGGTCAATA+TGG - chr2.1:26549123-26549142 MS.gene56616:intron 30.0%
! GAGGAGTATATTTGACAATT+TGG - chr2.1:26548783-26548802 MS.gene56616:CDS 30.0%
! TTTTTGATATGATCGTGCAT+AGG - chr2.1:26548307-26548326 MS.gene56616:CDS 30.0%
!!! AGTCTTGTTTTGGCAAAAAA+GGG - chr2.1:26549207-26549226 MS.gene56616:intron 30.0%
ATACGGATAACATGGAGATT+TGG + chr2.1:26548414-26548433 None:intergenic 35.0%
ATAGAAGGTAGAAACACATC+AGG + chr2.1:26547210-26547229 None:intergenic 35.0%
CATTGCAAATACGGATAACA+TGG + chr2.1:26548422-26548441 None:intergenic 35.0%
CTAAAGTCTCTTTGCATAAG+GGG - chr2.1:26549256-26549275 MS.gene56616:CDS 35.0%
GAAGAAACTACTAGAGAAAG+GGG - chr2.1:26547954-26547973 MS.gene56616:intron 35.0%
GATATTGTTGAAATTTGCGG+TGG - chr2.1:26548477-26548496 MS.gene56616:CDS 35.0%
GCAATGATGTGAAAAATCTC+GGG - chr2.1:26548436-26548455 MS.gene56616:CDS 35.0%
GGTAGGAAAGAAACTATAGA+AGG + chr2.1:26547225-26547244 None:intergenic 35.0%
TACGGATAACATGGAGATTT+GGG + chr2.1:26548413-26548432 None:intergenic 35.0%
! CCAAATTGTTTTCCAACGAT+GGG + chr2.1:26547280-26547299 None:intergenic 35.0%
! CTAATGCTGCAACTTTTCAA+AGG + chr2.1:26547889-26547908 None:intergenic 35.0%
! TCCAAATTGTTTTCCAACGA+TGG + chr2.1:26547281-26547300 None:intergenic 35.0%
!! AAGAGTGTTCAAAACATGGT+GGG + chr2.1:26548142-26548161 None:intergenic 35.0%
!! AAGATTCTTTAGTTGATGGC+TGG + chr2.1:26548878-26548897 None:intergenic 35.0%
!! AGGGGTATTAAACGTTTCAT+TGG - chr2.1:26547972-26547991 MS.gene56616:intron 35.0%
!! GAGTAAGAGTGTTCAAAACA+TGG + chr2.1:26548146-26548165 None:intergenic 35.0%
!! TAAGAGTGTTCAAAACATGG+TGG + chr2.1:26548143-26548162 None:intergenic 35.0%
!! TTTCTAGAATACATTGCTCC+AGG + chr2.1:26549457-26549476 None:intergenic 35.0%
!!! ATGGTGGTAGTTTTAACAAG+TGG - chr2.1:26549479-26549498 MS.gene56616:CDS 35.0%
!!! GAGTCTTGTTTTGGCAAAAA+AGG - chr2.1:26549206-26549225 MS.gene56616:intron 35.0%
!!! TGGTGGTAGTTTTAACAAGT+GGG - chr2.1:26549480-26549499 MS.gene56616:CDS 35.0%
AAAATCTAGGTCGAGACAGA+GGG + chr2.1:26548812-26548831 None:intergenic 40.0%
ACGGATAACATGGAGATTTG+GGG + chr2.1:26548412-26548431 None:intergenic 40.0%
AGTTGCTACAACTTCATTCC+AGG + chr2.1:26549380-26549399 None:intergenic 40.0%
ATATACTCCTCATGCAACCT+CGG + chr2.1:26548774-26548793 None:intergenic 40.0%
ATGATGTGAAAAATCTCGGG+AGG - chr2.1:26548439-26548458 MS.gene56616:CDS 40.0%
ATGTTAGAGAGTTGTGCAAG+CGG - chr2.1:26547913-26547932 MS.gene56616:intron 40.0%
CCCATCGTTGGAAAACAATT+TGG - chr2.1:26547277-26547296 MS.gene56616:CDS 40.0%
CTTTGCATAAGGGGATATAC+AGG - chr2.1:26549265-26549284 MS.gene56616:CDS 40.0%
GGAGAAAGAAGTGAGAGATA+TGG - chr2.1:26547155-26547174 MS.gene56616:CDS 40.0%
TAAAATCTAGGTCGAGACAG+AGG + chr2.1:26548813-26548832 None:intergenic 40.0%
TCGGCGAACCTAAGAAAATA+AGG + chr2.1:26548755-26548774 None:intergenic 40.0%
TTGTCCTTCGATCTTAAACC+TGG - chr2.1:26549436-26549455 MS.gene56616:CDS 40.0%
TTTGCCAAAACAAGACTCCT+GGG + chr2.1:26549204-26549223 None:intergenic 40.0%
! AGAGTGTTCAAAACATGGTG+GGG + chr2.1:26548141-26548160 None:intergenic 40.0%
! TCAAAACATGGTGGGGATTA+GGG + chr2.1:26548134-26548153 None:intergenic 40.0%
! TTATTTTCTTAGGTTCGCCG+AGG - chr2.1:26548754-26548773 MS.gene56616:CDS 40.0%
! TTCAAAACATGGTGGGGATT+AGG + chr2.1:26548135-26548154 None:intergenic 40.0%
! TTTTGCCAAAACAAGACTCC+TGG + chr2.1:26549205-26549224 None:intergenic 40.0%
!! AACAAGGCCGATTTTGCAAT+TGG + chr2.1:26547835-26547854 None:intergenic 40.0%
AATGCTTGTTTACCGTACCC+AGG - chr2.1:26549184-26549203 MS.gene56616:intron 45.0%
ACAAGTGGGTAACAACCCTA+AGG - chr2.1:26549494-26549513 MS.gene56616:CDS 45.0%
ATTGGCAATGCTTCGCAAAC+AGG - chr2.1:26547395-26547414 MS.gene56616:CDS 45.0%
CAAAACAAGACTCCTGGGTA+CGG + chr2.1:26549199-26549218 None:intergenic 45.0%
TGCATAAGGGGATATACAGG+TGG - chr2.1:26549268-26549287 MS.gene56616:CDS 45.0%
TGTTAGAGAGTTGTGCAAGC+GGG - chr2.1:26547914-26547933 MS.gene56616:intron 45.0%
! CAAAACATGGTGGGGATTAG+GGG + chr2.1:26548133-26548152 None:intergenic 45.0%
! CACACTAGTTCTCACAGCAT+CGG + chr2.1:26547253-26547272 None:intergenic 45.0%
! TGCTCCAGGTTTAAGATCGA+AGG + chr2.1:26549443-26549462 None:intergenic 45.0%
!! GGTTTTTGGATGATTGCTCC+TGG - chr2.1:26549359-26549378 MS.gene56616:CDS 45.0%
!! TGCGAAGCATTGCCAATTCA+AGG + chr2.1:26547392-26547411 None:intergenic 45.0%
CTAGTGTGCTTTCCCATCGT+TGG - chr2.1:26547265-26547284 MS.gene56616:CDS 50.0%
GTTAGAGAGTTGTGCAAGCG+GGG - chr2.1:26547915-26547934 MS.gene56616:intron 50.0%
TGGTAAGTGACACACCGACA+CGG + chr2.1:26549235-26549254 None:intergenic 50.0%
!! CGGGAGGCATTTAGCAACAA+GGG - chr2.1:26548455-26548474 MS.gene56616:CDS 50.0%
!! TCGGGAGGCATTTAGCAACA+AGG - chr2.1:26548454-26548473 MS.gene56616:CDS 50.0%
!!! CGTACCCAGGAGTCTTGTTT+TGG - chr2.1:26549197-26549216 MS.gene56616:intron 50.0%
GGCAAAAAAGGGAGCCGTGT+CGG - chr2.1:26549218-26549237 MS.gene56616:intron 55.0%
!! GTTCTCACAGCATCGGTTGC+CGG + chr2.1:26547246-26547265 None:intergenic 55.0%
AGGTTCGCCGAGGTTGCATG+AGG - chr2.1:26548764-26548783 MS.gene56616:CDS 60.0%
CAAGCGGGGACGTTGTAAGG+TGG - chr2.1:26547929-26547948 MS.gene56616:intron 60.0%
GTGCAAGCGGGGACGTTGTA+AGG - chr2.1:26547926-26547945 MS.gene56616:intron 60.0%
!! TCACAGCATCGGTTGCCGGT+AGG + chr2.1:26547242-26547261 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 26547141 26549519 26547141 ID=MS.gene56616
chr2.1 mRNA 26547141 26549519 26547141 ID=MS.gene56616.t1;Parent=MS.gene56616
chr2.1 exon 26549244 26549519 26549244 ID=MS.gene56616.t1.exon1;Parent=MS.gene56616.t1
chr2.1 CDS 26549244 26549519 26549244 ID=cds.MS.gene56616.t1;Parent=MS.gene56616.t1
chr2.1 exon 26548154 26548861 26548154 ID=MS.gene56616.t1.exon2;Parent=MS.gene56616.t1
chr2.1 CDS 26548154 26548861 26548154 ID=cds.MS.gene56616.t1;Parent=MS.gene56616.t1
chr2.1 exon 26547748 26547894 26547748 ID=MS.gene56616.t1.exon3;Parent=MS.gene56616.t1
chr2.1 CDS 26547748 26547894 26547748 ID=cds.MS.gene56616.t1;Parent=MS.gene56616.t1
chr2.1 exon 26547141 26547524 26547141 ID=MS.gene56616.t1.exon4;Parent=MS.gene56616.t1
chr2.1 CDS 26547141 26547524 26547141 ID=cds.MS.gene56616.t1;Parent=MS.gene56616.t1
Gene Sequence

>MS.gene56616

ATGGGGGAAGGAGTGGAGAAAGAAGTGAGAGATATGGATGAAGAAGAAGATCTGTTCAACAATCTTCCTGATGTGTTTCTACCTTCTATAGTTTCTTTCCTACCGGCAACCGATGCTGTGAGAACTAGTGTGCTTTCCCATCGTTGGAAAACAATTTGGAAGTACTCTTCGCAACTGAGTTTTAACCAAAGAGAAATGTTGAAATCGTTGATCAAAGTTTATATTGAAACTTATGATAAAAATAAGCGCCTTGAATTGGCAATGCTTCGCAAACAGGTACACTCTTAGAGAAATCATTTAATAGTATTTACAAATTTTTTCTTACATGTTTTACGATTGTAAGTTAATAAAATTTAATCAATCTCTTTACGTTGAAATAACGATTTTTGATTTGATTTTTTTCTTGGTTGACTTAATTCTCTCTAGTTCATCCATCCTTTCCAATACTACAATTAGATTAATAAAAAAGTATAGAGCAGTGATATTTCAATAGTTAGGTTAATCATTTGGTTCAAGCTTTGTTTGAGAGTTGTTTAGAAATGACCATAGAGAATCTAATTCCAAGTTTTTACTTCCCTTTTTGTAATAAAATAGATGAACTTTCAATTCTTAATTCTTTCGAAATATGATATAGATTCCTAAAATTTGTGCATGACAGATTCCTCTTAAATATGCGAATGCATTTTTGGATCCAATTGCAAAATCGGCCTTGTTGATGAAATCAATTATTGATGATCATATCGGTCCTTTGAAAAGTTGCAGCATTAGACATATGTTAGAGAGTTGTGCAAGCGGGGACGTTGTAAGGTGGATGAAGAAACTACTAGAGAAAGGGGTATTAAACGTTTCATTGGAACTTGAATCCAATGATCTACAAAATATTAATGGTGATTGGACAAAATTTGGTGAAATCCTTTTTATGCCTTTTGATGTTTTAACTAGTTTTAAGGTTTTGGAATTGAAGAACTATTATTTGAAAACTACATTTTCCCCTAATCCCCACCATGTTTTGAACACTCTTACTCTTAACAACGTTCGTGTTGAATCAAATGATTTTGAAGACATTCTCTCTCAATGTTTGTCACTTGAAAATCTCACCCTTGAAAAATGTTATTTATTTGGAGATGGGGTCAAGATTGATAGCCCAAGTCTCAAATATTTTAAATTTTTTGATATGATCGTGCATAGGATGTTGATTTCTGCAACTAACATTGAAGTCATTGAGATTGGAACCATTGTATGTAATAATGAAGATCTAATTTTCGAGACCCCAAATCTCCATGTTATCCGTATTTGCAATGATGTGAAAAATCTCGGGAGGCATTTAGCAACAAGGGATATTGTTGAAATTTGCGGTGGCATTTCAGTGAGTTTTTCTTCTCGTATCTACAATATTTCAGTTTGCCCATGAATCAATGTCAATAGTTTGTGCTTTTTGCATAGATACATTTGATTAACTGGAATTAATAAGGATATAATCCAATGTTTTGATTTGCCTATGAAGTAATTTGTTCTTGTTGGAACCCAATAATTTATGTCAATAACTTAAGCCCTATTGTAATTTTCATAATTTAACATTATATATTTATGTATATTATTATAACAATATGTCCTTATTTTCTTAGGTTCGCCGAGGTTGCATGAGGAGTATATTTGACAATTTGGTTACCCTCTGTCTCGACCTAGATTTTACAAATAATAGAAATTTAATAGCTCTTTCGTTTGCACTTAAGTCCAGCCATCAACTAAAGAATCTTCAAATAAATAATCAGGTGCGTTTAGGTTTACTTCAGCCATATGTTAAAAACTATATTTATTTTATGTTACATGTGTTAAATCATACAGGTCTTAGACTGAATATGCAATAAAAAAAATATTGTCATAATATGAAGATTATTTTTTCTGCGTGAAAAATGTTGTAGTCGAGTTAGTCATATTTTATTGCGAACTACTTAGCTATATCCATGAAATGTTTTTTTCTTCAATTTGTTCTAGGTCAATATGGATTACATTTACAATGGTGGCGTAACTGATCAGAATGACAATGCTTGTTTACCGTACCCAGGAGTCTTGTTTTGGCAAAAAAGGGAGCCGTGTCGGTGTGTCACTTACCAACTAAAGTCTCTTTGCATAAGGGGATATACAGGTGGAGAGTTTGAATATGAATTTGTCAAGTACTTAATATTAAACGGTGAAGTTATAGAGAATATTACAATCTGGTTTTTGGATGATTGCTCCTGGAATGAAGTTGTAGCAACTAATTGTCTGCTTTCATACCCAAAGCGTTCTTTTAAATTGTCCTTCGATCTTAAACCTGGAGCAATGTATTCTAGAAAATATGGTGGTAGTTTTAACAAGTGGGTAACAACCCTAAGGTGA
Protein sequence

>MS.gene56616.t1

MGEGVEKEVRDMDEEEDLFNNLPDVFLPSIVSFLPATDAVRTSVLSHRWKTIWKYSSQLSFNQREMLKSLIKVYIETYDKNKRLELAMLRKQIPLKYANAFLDPIAKSALLMKSIIDDHIGPLKSCSIRHMLESCASGDVVRWMKKLLEKGVLNVSLELESNDLQNINGDWTKFGEILFMPFDVLTSFKVLELKNYYLKTTFSPNPHHVLNTLTLNNVRVESNDFEDILSQCLSLENLTLEKCYLFGDGVKIDSPSLKYFKFFDMIVHRMLISATNIEVIEIGTIVCNNEDLIFETPNLHVIRICNDVKNLGRHLATRDIVEICGGISVRRGCMRSIFDNLVTLCLDLDFTNNRNLIALSFALKSSHQLKNLQINNQVNMDYIYNGGVTDQNDNACLPYPGVLFWQKREPCRCVTYQLKSLCIRGYTGGEFEYEFVKYLILNGEVIENITIWFLDDCSWNEVVATNCLLSYPKRSFKLSFDLKPGAMYSRKYGGSFNKWVTTLR