AlfalfaGEDB | MS.gene56784

M. sativa cultivar XinJiangDaYe / MS.gene56784

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56784.t1	KEH16420.1	92	337	25	1	1	337	21	355	1.90E-180	641.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56784.t1	O80888	42.0	264	146	3	1	262	1	259	3.3e-53	210.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56784.t1	A0A072TSA7	92.0	337	25	1	1	337	21	355	1.3e-180	641.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene56784	MS.gene56256	PPI
MS.gene56784	MS.gene009458	PPI
MS.gene56784	MS.gene062821	PPI
MS.gene56784	MS.gene068659	PPI
MS.gene56784	MS.gene063452	PPI
MS.gene56784	MS.gene039215	PPI
MS.gene56784	MS.gene63514	PPI
MS.gene56784	MS.gene51627	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56784.t1	MTR_0189s0010	91.988	337	25	1	1	337	21	355	0.0	641
MS.gene56784.t1	MTR_0154s0020	91.395	337	27	1	1	337	1	335	0.0	634
MS.gene56784.t1	MTR_0154s0040	88.724	337	36	1	1	337	1	335	0.0	612
MS.gene56784.t1	MTR_5g017110	56.980	351	134	4	2	337	3	351	1.69e-137	394
MS.gene56784.t1	MTR_5g017140	59.926	272	103	3	1	269	1	269	7.00e-115	335
MS.gene56784.t1	MTR_2g023890	39.003	341	189	9	1	337	3	328	4.69e-70	222
MS.gene56784.t1	MTR_2g088020	39.931	288	157	7	1	282	3	280	2.87e-61	201
MS.gene56784.t1	MTR_4g049730	37.017	362	172	13	1	337	1	331	2.29e-57	191
MS.gene56784.t1	MTR_2g005290	36.877	301	156	9	2	273	9	304	4.71e-57	189
MS.gene56784.t1	MTR_5g071560	33.908	348	194	12	3	337	4	328	6.26e-47	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56784.t1	AT4G36950	52.023	346	147	5	1	337	1	336	1.69e-117	343
MS.gene56784.t1	AT5G67080	49.724	362	139	9	1	337	1	344	2.03e-111	328
MS.gene56784.t1	AT3G50310	49.162	358	145	6	1	337	1	342	1.13e-109	323
MS.gene56784.t1	AT5G55090	42.135	356	170	12	2	337	5	344	4.05e-74	236
MS.gene56784.t1	AT5G55090	42.135	356	170	12	2	337	67	406	1.28e-73	236
MS.gene56784.t1	AT2G32510	42.045	264	146	3	1	262	1	259	9.00e-64	207
MS.gene56784.t1	AT4G26890	38.701	354	184	10	1	337	3	340	1.50e-63	208
MS.gene56784.t1	AT1G07150	39.726	292	160	10	3	288	9	290	1.74e-60	201
MS.gene56784.t1	AT1G07150	39.726	292	160	10	3	288	23	304	1.78e-60	201
MS.gene56784.t1	AT1G05100	37.784	352	189	11	1	337	1	337	5.47e-59	193

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Find 73 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTTCTTCATCAACT+TGG	0.519233	8.2:-25676604	MS.gene56784:CDS
AACAACATAGTTCAATGGAT+TGG	0.429559	8.2:-25676765	None:intergenic
AACACATTCGCCATTACGCG+AGG	0.659700	8.2:-25676438	MS.gene56784:CDS
AACCGGAAGACTCAAATCAA+TGG	0.487828	8.2:-25675868	MS.gene56784:CDS
ACAACATAGTTCAATGGATT+GGG	0.474828	8.2:-25676764	None:intergenic
ACCATTGAGCTTCACCTGAT+CGG	0.544166	8.2:+25676477	None:intergenic
ACCGGAAGACTCAAATCAAT+GGG	0.495736	8.2:-25675867	MS.gene56784:CDS
AGACGGCGAGTATGAATCTC+CGG	0.538053	8.2:-25676224	MS.gene56784:CDS
AGGTGAAGCTCAATGGTGGC+CGG	0.576353	8.2:-25676471	MS.gene56784:CDS
AGTTCAATGGATTGGGTACG+AGG	0.609169	8.2:-25676757	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTTCTTCATCAACT+TGG	-	chr8.2:25675907-25675926	MS.gene56784:CDS	30.0%
CCAGAAGAATTATCAAAAGA+AGG	-	chr8.2:25676441-25676460	MS.gene56784:CDS	30.0%
GATAATTCTTCTGGTATCAA+TGG	+	chr8.2:25676435-25676454	None:intergenic	30.0%
TGAAAGATCCAAGAAAAAGA+TGG	-	chr8.2:25676490-25676509	MS.gene56784:CDS	30.0%
TGAAGAAAGATTCGAATATG+TGG	-	chr8.2:25676373-25676392	MS.gene56784:CDS	30.0%
AGATCCAAGAAAAAGATGGA+CGG	-	chr8.2:25676494-25676513	MS.gene56784:CDS	35.0%
CTTGATCATATTCATCGCAA+TGG	-	chr8.2:25676111-25676130	MS.gene56784:CDS	35.0%
TCTTTCTTCAAATTCCAAGC+TGG	+	chr8.2:25676363-25676382	None:intergenic	35.0%
AACCGGAAGACTCAAATCAA+TGG	-	chr8.2:25676643-25676662	MS.gene56784:CDS	40.0%
ACCGGAAGACTCAAATCAAT+GGG	-	chr8.2:25676644-25676663	MS.gene56784:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	25675760	25676773	25675760	ID=MS.gene56784
chr8.2	mRNA	25675760	25676773	25675760	ID=MS.gene56784.t1;Parent=MS.gene56784
chr8.2	exon	25675760	25676773	25675760	ID=MS.gene56784.t1.exon1;Parent=MS.gene56784.t1
chr8.2	CDS	25675760	25676773	25675760	ID=cds.MS.gene56784.t1;Parent=MS.gene56784.t1

Gene Sequence

>MS.gene56784

ATGGATTGGGTACGAGGAGAAACAGTTGGAAGAGGAAGCTTTGCAACTGTTAATTTAGTTATTCCCATTGGAAATTCAAATTCATATTCCACTCCGACAGCCGTCAAAACATCCGAGGTTTCAACCTCGTCTTCACTCAAAAACGAGAAACATGTTCTTCATCAACTTGGTTCTTGTCAAAGAATTATTCCTTGTTTCGGAGATGGTTACACTTTTGAGAATGGTAAAGAGTATTACAATTTATTTCTCGAATACGCCTCCGCTGGAACTCTCTCCGATCAGGTGAAGCTCAATGGTGGCCGGATACCGGAGCAACACATTCGCCATTACGCGAGGTCAATCGTCGAGGGACTTGATCATATTCATCGCAATGGATTCGTTCATTGTGATATAAAGCTTCAAAATATTTTAGTATTCAATGATGGTGATATCAAAATTGCTGATTTTGGTCTTGCCAAGAAAACAGGGGAAAAACAGAGTTTTGAATGCAGGGGAACTCCACTTTTTATGTCGCCGGAATCAGTGAAAGACGGCGAGTATGAATCTCCGGCGGATATATGGGCACTTGGGTGTGCAGTGGTGGAAATGGTAACAGGAAAACCAGCTTGGAATTTGAAGAAAGATTCGAATATGTGGTCGTTGTTGCTTCGAATTGGTGCCGGAGAAGAATCGCCATTGATACCAGAAGAATTATCAAAAGAAGGAAAAGATTTTGTTGAGAAGTGTTTTGTGAAAGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTTATTGAAGAAGTTAAGAATGTTAATGAATCATCACCAAGAAATCACTTTGATTTCAATGATTGGGTTTCTAGTGTGAGTGATTCTGTTCCGAATTCACCGGAACCGGAAGACTCAAATCAATGGGATTTTGATTCTAAATTTTGCTCGGTGGTGGACCGGCTCCGGCAGCTTGTGACTGATGAACGGTTGGTGAGTTCGTCGGAATTAGATAGTTGGATTAGTGTTAGATGA

Protein sequence

>MS.gene56784.t1

MDWVRGETVGRGSFATVNLVIPIGNSNSYSTPTAVKTSEVSTSSSLKNEKHVLHQLGSCQRIIPCFGDGYTFENGKEYYNLFLEYASAGTLSDQVKLNGGRIPEQHIRHYARSIVEGLDHIHRNGFVHCDIKLQNILVFNDGDIKIADFGLAKKTGEKQSFECRGTPLFMSPESVKDGEYESPADIWALGCAVVEMVTGKPAWNLKKDSNMWSLLLRIGAGEESPLIPEELSKEGKDFVEKCFVKDPRKRWTAEMLLNHPFIEEVKNVNESSPRNHFDFNDWVSSVSDSVPNSPEPEDSNQWDFDSKFCSVVDRLRQLVTDERLVSSSELDSWISVR