Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56803.t1 | XP_024636916.1 | 91.7 | 302 | 24 | 1 | 1 | 302 | 85 | 385 | 2.30E-153 | 551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56803.t1 | B1AZ99 | 27.3 | 194 | 122 | 3 | 2 | 194 | 109 | 284 | 9.1e-10 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56803.t1 | A0A072UQ38 | 91.4 | 302 | 24 | 2 | 1 | 302 | 85 | 384 | 1.2e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene56803 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene050300 | MS.gene56803 | -0.805608 | 1.23E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene56803 | 0.81273 | 3.66E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene56803 | 0.80651 | 7.94E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene56803 | 0.802586 | 5.23E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene56803 | 0.827183 | 1.80E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene56803 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene56803 | 0.822567 | 2.21E-53 | -1.69E-46 |
| MS.gene05517 | MS.gene56803 | 0.810596 | 1.07E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene56803 | 0.803211 | 3.88E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene56803 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene56803 | 0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene56803 | 0.82062 | 6.23E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene56803 | 0.819939 | 8.92E-53 | -1.69E-46 |
| MS.gene058159 | MS.gene56803 | 0.818014 | 2.44E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene56803 | 0.827568 | 1.46E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56803.t1 | MTR_4g094860 | 91.391 | 302 | 24 | 2 | 1 | 302 | 85 | 384 | 0.0 | 570 |
| MS.gene56803.t1 | MTR_4g094860 | 91.391 | 302 | 24 | 2 | 1 | 302 | 12 | 311 | 0.0 | 569 |
| MS.gene56803.t1 | MTR_4g094860 | 90.000 | 300 | 29 | 1 | 1 | 300 | 85 | 383 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56803.t1 | AT5G67170 | 54.516 | 310 | 118 | 6 | 1 | 302 | 1 | 295 | 2.95e-110 | 322 |
| MS.gene56803.t1 | AT5G67170 | 54.516 | 310 | 118 | 6 | 1 | 302 | 81 | 375 | 3.67e-109 | 322 |
| MS.gene56803.t1 | AT5G67170 | 54.516 | 310 | 118 | 6 | 1 | 302 | 81 | 375 | 3.67e-109 | 322 |
Find 63 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAGGTCAATTGTTATTA+AGG | 0.190097 | 8.2:-25388854 | MS.gene56803:intron |
| GGCTGGACATTGGAATTTGC+AGG | 0.305083 | 8.2:-25390407 | MS.gene56803:CDS |
| TGGGACTTCATCTTCAATAA+AGG | 0.320750 | 8.2:+25390471 | None:intergenic |
| CACAGAAGATTCCTAGAAAC+AGG | 0.321311 | 8.2:-25387919 | MS.gene56803:intron |
| TTATAATAGTGTGCGGTTAA+AGG | 0.329056 | 8.2:-25388896 | MS.gene56803:CDS |
| CGTCACATCAACCGAAAGAT+AGG | 0.331335 | 8.2:-25388713 | MS.gene56803:CDS |
| TTAATAACAATTGACCTTGC+AGG | 0.361790 | 8.2:+25388856 | None:intergenic |
| TTCTGATTGCCTTCCTAGTC+AGG | 0.376724 | 8.2:-25388407 | MS.gene56803:CDS |
| CACGGGCAGACCCTGTTTCT+AGG | 0.382042 | 8.2:+25387908 | None:intergenic |
| GCTTGTTGTGGAACTTCGTC+GGG | 0.385216 | 8.2:-25387863 | MS.gene56803:CDS |
| TGACTCAGTGACACGTGATA+TGG | 0.389388 | 8.2:-25387537 | MS.gene56803:CDS |
| CCATGGAAAATGATGGTACT+TGG | 0.393470 | 8.2:-25390429 | MS.gene56803:CDS |
| TTTCTAGGTCTTATCATGAT+GGG | 0.433888 | 8.2:-25388924 | MS.gene56803:intron |
| GGGACTTCATCTTCAATAAA+GGG | 0.442480 | 8.2:+25390472 | None:intergenic |
| TCCTTCTGGAGTCAGTGGCT+TGG | 0.449320 | 8.2:+25387615 | None:intergenic |
| CTATCTTTCGGTTGATGTGA+CGG | 0.468316 | 8.2:+25388714 | None:intergenic |
| CTTGTTGCAGATTCTAGAGC+AGG | 0.469779 | 8.2:-25388500 | MS.gene56803:intron |
| TCGGTAAAGGTGGTTATGGC+TGG | 0.470813 | 8.2:-25388642 | MS.gene56803:CDS |
| CCTAGTCAGGCTAGTACTAC+TGG | 0.471988 | 8.2:-25388394 | MS.gene56803:intron |
| TTCTTACTAGCTTCAGCATA+CGG | 0.478063 | 8.2:+25388681 | None:intergenic |
| GACTCCACAGTACTTACAAA+TGG | 0.479479 | 8.2:+25389956 | None:intergenic |
| CGGGTCGGTAAAGGTGGTTA+TGG | 0.480387 | 8.2:-25388646 | MS.gene56803:CDS |
| AAGGTGGTTATGGCTGGAAG+TGG | 0.486837 | 8.2:-25388636 | MS.gene56803:CDS |
| GAAAATGATGGTACTTGGGC+TGG | 0.488681 | 8.2:-25390424 | MS.gene56803:CDS |
| AGCTTGTTGTGGAACTTCGT+CGG | 0.499481 | 8.2:-25387864 | MS.gene56803:CDS |
| CTATGCAGAACATGTTTCCT+CGG | 0.502760 | 8.2:-25390019 | MS.gene56803:intron |
| TTTGTTCCTTCTGGAGTCAG+TGG | 0.509559 | 8.2:+25387610 | None:intergenic |
| AAAGGGATTTCTGCAAAAGC+TGG | 0.509942 | 8.2:-25387575 | MS.gene56803:CDS |
| TTCTAGGTCTTATCATGATG+GGG | 0.513921 | 8.2:-25388923 | MS.gene56803:intron |
| CAGATTCTAGAGCAGGTGAA+TGG | 0.521237 | 8.2:-25388493 | MS.gene56803:CDS |
| ATGGTACTTGGGCTGGACAT+TGG | 0.525336 | 8.2:-25390417 | MS.gene56803:CDS |
| GTCTGGCAATAATCATCGAA+TGG | 0.537170 | 8.2:+25390451 | None:intergenic |
| TAGTAACATATGCATCCATC+GGG | 0.537648 | 8.2:-25390365 | MS.gene56803:intron |
| TCTGGCAATAATCATCGAAT+GGG | 0.540543 | 8.2:+25390452 | None:intergenic |
| GCACAAAGAAAACATGGTAG+AGG | 0.542120 | 8.2:-25388186 | MS.gene56803:CDS |
| AAGAAATACAAAGCTTGTTG+TGG | 0.546374 | 8.2:-25387875 | MS.gene56803:CDS |
| CATAACCACCTTTACCGACC+CGG | 0.556866 | 8.2:+25388647 | None:intergenic |
| GACTCAGTGACACGTGATAT+GGG | 0.557217 | 8.2:-25387536 | MS.gene56803:CDS |
| CCAGTAGTACTAGCCTGACT+AGG | 0.558176 | 8.2:+25388394 | None:intergenic |
| TCAGCCCGGGTCGGTAAAGG+TGG | 0.561216 | 8.2:-25388652 | MS.gene56803:CDS |
| ATAACCACCTTTACCGACCC+GGG | 0.575556 | 8.2:+25388648 | None:intergenic |
| TGCCAGACCATGGAAAATGA+TGG | 0.577620 | 8.2:-25390436 | MS.gene56803:CDS |
| CGATGATTATTGCCAGACCA+TGG | 0.578237 | 8.2:-25390446 | MS.gene56803:CDS |
| ATAGTAACATATGCATCCAT+CGG | 0.583124 | 8.2:-25390366 | MS.gene56803:CDS |
| ATGTGACGGTGCTGAAAGAT+CGG | 0.584003 | 8.2:+25388728 | None:intergenic |
| TTAAAGGATGATCCTTGTGA+TGG | 0.588931 | 8.2:-25388880 | MS.gene56803:CDS |
| TAGTACTAGCCTGACTAGGA+AGG | 0.598351 | 8.2:+25388398 | None:intergenic |
| ATGGTAGAGGAGAGCAGTCA+CGG | 0.607473 | 8.2:-25388173 | MS.gene56803:CDS |
| ACCAAGCCACTGACTCCAGA+AGG | 0.611764 | 8.2:-25387616 | MS.gene56803:CDS |
| GACCTTGCAGGTCCATCACA+AGG | 0.613567 | 8.2:+25388868 | None:intergenic |
| GTCACATCAACCGAAAGATA+GGG | 0.613702 | 8.2:-25388712 | MS.gene56803:CDS |
| CACATCGCAACAAAATGACA+AGG | 0.622735 | 8.2:-25388102 | MS.gene56803:intron |
| CATGGAAAATGATGGTACTT+GGG | 0.629227 | 8.2:-25390428 | MS.gene56803:CDS |
| TGAGAAGCACAAAGAAAACA+TGG | 0.640546 | 8.2:-25388192 | MS.gene56803:CDS |
| TCGATGATCTCAAGTTCACA+TGG | 0.651083 | 8.2:-25389980 | MS.gene56803:CDS |
| TGCAGAACATGTTTCCTCGG+TGG | 0.667115 | 8.2:-25390016 | MS.gene56803:intron |
| AGAAACAGGGTCTGCCCGTG+CGG | 0.673016 | 8.2:-25387905 | MS.gene56803:CDS |
| GAGTTTCTAATAGCAGAACA+AGG | 0.677087 | 8.2:-25388451 | MS.gene56803:CDS |
| GGGAGCATTATAATAGTGTG+CGG | 0.690633 | 8.2:-25388903 | MS.gene56803:CDS |
| CTTGTTGTGGAACTTCGTCG+GGG | 0.699274 | 8.2:-25387862 | MS.gene56803:CDS |
| ACAGAAGATTCCTAGAAACA+GGG | 0.710528 | 8.2:-25387918 | MS.gene56803:intron |
| ATCCTTGTGATGGACCTGCA+AGG | 0.717426 | 8.2:-25388870 | MS.gene56803:CDS |
| AAATTTCTTATATACCACCG+AGG | 0.747420 | 8.2:+25390002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAACAAAATTTA+TGG | + | chr8.2:25387823-25387842 | None:intergenic | 10.0% |
| !! | AATAAATAAGGTTATATTAG+TGG | - | chr8.2:25388788-25388807 | MS.gene56803:intron | 15.0% |
| !! | TGTTTATGAATAATAATGAA+TGG | + | chr8.2:25388491-25388510 | None:intergenic | 15.0% |
| !!! | ACAATAATTAAATTTTGTCT+AGG | - | chr8.2:25388393-25388412 | MS.gene56803:intron | 15.0% |
| !!! | TTAACATTAATTTGAGAATT+AGG | + | chr8.2:25389192-25389211 | None:intergenic | 15.0% |
| !! | AATAATAATGAATGTTGCAT+TGG | - | chr8.2:25388813-25388832 | MS.gene56803:intron | 20.0% |
| !! | GTGCATATATATAACATTTA+AGG | - | chr8.2:25388962-25388981 | MS.gene56803:intron | 20.0% |
| !! | TGAATAGTTGAAATTAAAAC+AGG | + | chr8.2:25390220-25390239 | None:intergenic | 20.0% |
| !! | TGTTATATATATGCACAAAT+AGG | + | chr8.2:25388958-25388977 | None:intergenic | 20.0% |
| !! | TTAGCTGATATAATTTAGTT+AGG | - | chr8.2:25388425-25388444 | MS.gene56803:CDS | 20.0% |
| !! | TTCAAAAACTAGAATTAATC+AGG | + | chr8.2:25389244-25389263 | None:intergenic | 20.0% |
| !!! | ATACGACAATTAATTTGAAA+CGG | + | chr8.2:25388647-25388666 | None:intergenic | 20.0% |
| !!! | ATCAATTTTGATGCTTTATT+CGG | - | chr8.2:25389044-25389063 | MS.gene56803:intron | 20.0% |
| !!! | ATTTAGTTAGGTTATTTTGA+CGG | - | chr8.2:25388437-25388456 | MS.gene56803:CDS | 20.0% |
| !!! | GATATTATCATTAGTTTTTG+TGG | + | chr8.2:25389880-25389899 | None:intergenic | 20.0% |
| !!! | GATTAATTCTAGTTTTTGAA+AGG | - | chr8.2:25389244-25389263 | MS.gene56803:intron | 20.0% |
| !!! | TCAAATTAATTGTCGTATTT+TGG | - | chr8.2:25388649-25388668 | MS.gene56803:CDS | 20.0% |
| !!! | TCCAAAATAAATATTTTCAC+AGG | - | chr8.2:25389986-25390005 | MS.gene56803:CDS | 20.0% |
| ! | AACAAAAAAGATACGAAGAA+AGG | - | chr8.2:25390408-25390427 | MS.gene56803:CDS | 25.0% |
| ! | AAGTGACAATTATTATGAGA+CGG | - | chr8.2:25388879-25388898 | MS.gene56803:CDS | 25.0% |
| ! | ACAAAAAAGATACGAAGAAA+GGG | - | chr8.2:25390409-25390428 | MS.gene56803:CDS | 25.0% |
| ! | ACCCTATTAATTATAGTTAG+CGG | - | chr8.2:25388742-25388761 | MS.gene56803:intron | 25.0% |
| ! | CAGAAACAAATTACCAATTA+TGG | + | chr8.2:25389678-25389697 | None:intergenic | 25.0% |
| ! | GGAATGAACTTCAATAAATA+AGG | - | chr8.2:25388776-25388795 | MS.gene56803:intron | 25.0% |
| ! | TCCGCTAACTATAATTAATA+GGG | + | chr8.2:25388746-25388765 | None:intergenic | 25.0% |
| ! | TCTAATATTATGATCTCCTT+TGG | - | chr8.2:25390015-25390034 | MS.gene56803:intron | 25.0% |
| !! | ATGTTGTTTATTCTGATATG+AGG | - | chr8.2:25388362-25388381 | MS.gene56803:intron | 25.0% |
| !! | ATTGTTATTAAGGTTCTTGT+TGG | - | chr8.2:25389157-25389176 | MS.gene56803:intron | 25.0% |
| !! | GCCTGTGAAAATATTTATTT+TGG | + | chr8.2:25389990-25390009 | None:intergenic | 25.0% |
| !! | GTAACTATTAGTTTCTTATC+AGG | - | chr8.2:25388598-25388617 | MS.gene56803:intron | 25.0% |
| !! | TAGGTCTTCATTTTATGATT+TGG | - | chr8.2:25388260-25388279 | MS.gene56803:intron | 25.0% |
| !!! | TCAATTTTGATGCTTTATTC+GGG | - | chr8.2:25389045-25389064 | MS.gene56803:intron | 25.0% |
| !!! | TGTAGTGTAGTTGATTTTAA+TGG | - | chr8.2:25388694-25388713 | MS.gene56803:CDS | 25.0% |
| AAATTTCTTATATACCACCG+AGG | + | chr8.2:25388002-25388021 | None:intergenic | 30.0% | |
| AACAAAACCTAAAATCGAAG+GGG | + | chr8.2:25389934-25389953 | None:intergenic | 30.0% | |
| AACAATATGATCTGAATCCT+AGG | + | chr8.2:25388536-25388555 | None:intergenic | 30.0% | |
| ACAACAAACAAAAATGCCAA+AGG | + | chr8.2:25390034-25390053 | None:intergenic | 30.0% | |
| AGAAAATAATTGTGACCACT+CGG | + | chr8.2:25390254-25390273 | None:intergenic | 30.0% | |
| AGCATCAAAATTGATATGCA+AGG | + | chr8.2:25389039-25389058 | None:intergenic | 30.0% | |
| ATAGTAACATATGCATCCAT+CGG | - | chr8.2:25387635-25387654 | MS.gene56803:intron | 30.0% | |
| ATGTGAAAACAGAGAAAAAG+TGG | - | chr8.2:25389388-25389407 | MS.gene56803:intron | 30.0% | |
| CAACAAAACCTAAAATCGAA+GGG | + | chr8.2:25389935-25389954 | None:intergenic | 30.0% | |
| CAACAAAGTTAGAGAACATT+TGG | + | chr8.2:25390322-25390341 | None:intergenic | 30.0% | |
| CTACTTAAATATCTCCACTA+TGG | + | chr8.2:25387785-25387804 | None:intergenic | 30.0% | |
| CTATGTTAATGACAATTCCT+AGG | - | chr8.2:25388516-25388535 | MS.gene56803:intron | 30.0% | |
| CTCCGCTAACTATAATTAAT+AGG | + | chr8.2:25388747-25388766 | None:intergenic | 30.0% | |
| GAGGAATTAAACATGTTCAA+GGG | + | chr8.2:25387669-25387688 | None:intergenic | 30.0% | |
| GCCTAAAAAAATAGACAACA+CGG | + | chr8.2:25388152-25388171 | None:intergenic | 30.0% | |
| GTGAAATTTCACACAATTGA+AGG | + | chr8.2:25388130-25388149 | None:intergenic | 30.0% | |
| TCAAGACAATTATTCTGAAC+TGG | + | chr8.2:25389016-25389035 | None:intergenic | 30.0% | |
| TTAATAACAATTGACCTTGC+AGG | + | chr8.2:25389148-25389167 | None:intergenic | 30.0% | |
| TTATAATAGTGTGCGGTTAA+AGG | - | chr8.2:25389105-25389124 | MS.gene56803:intron | 30.0% | |
| ! | AATACTGCATTTGAAAGCAT+AGG | + | chr8.2:25388289-25388308 | None:intergenic | 30.0% |
| ! | AGTGGTCACAATTATTTTCT+AGG | - | chr8.2:25390254-25390273 | MS.gene56803:intron | 30.0% |
| ! | CTAAGTATGTTACTTACCTA+CGG | - | chr8.2:25388094-25388113 | MS.gene56803:intron | 30.0% |
| ! | GACAATTAATTTGAAACGGA+GGG | + | chr8.2:25388643-25388662 | None:intergenic | 30.0% |
| ! | GTGGTCACAATTATTTTCTA+GGG | - | chr8.2:25390255-25390274 | MS.gene56803:intron | 30.0% |
| ! | TGCAAGGTCAATTGTTATTA+AGG | - | chr8.2:25389147-25389166 | MS.gene56803:intron | 30.0% |
| ! | TTTCTAGGTCTTATCATGAT+GGG | - | chr8.2:25389077-25389096 | MS.gene56803:intron | 30.0% |
| !! | AAGAAATACAAAGCTTGTTG+TGG | - | chr8.2:25390126-25390145 | MS.gene56803:intron | 30.0% |
| !! | TTTTCTAGGTCTTATCATGA+TGG | - | chr8.2:25389076-25389095 | MS.gene56803:intron | 30.0% |
| !!! | ACCGTGTTGTCTATTTTTTT+AGG | - | chr8.2:25388148-25388167 | MS.gene56803:CDS | 30.0% |
| !!! | TATTTCTTTTTTGAACCGCA+CGG | + | chr8.2:25390114-25390133 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCCCTTCGATTTT+AGG | - | chr8.2:25389924-25389943 | MS.gene56803:intron | 30.0% |
| AAACAGAGAAAAAGTGGAAC+AGG | - | chr8.2:25389394-25389413 | MS.gene56803:intron | 35.0% | |
| AACTCTTATCTCGAATTCCT+GGG | - | chr8.2:25389756-25389775 | MS.gene56803:intron | 35.0% | |
| ACAGAAGATTCCTAGAAACA+GGG | - | chr8.2:25390083-25390102 | MS.gene56803:intron | 35.0% | |
| ACTTACACCAGAATGAAGAT+TGG | - | chr8.2:25387752-25387771 | MS.gene56803:intron | 35.0% | |
| AGATGTGACATGAGAATACA+AGG | + | chr8.2:25387694-25387713 | None:intergenic | 35.0% | |
| ATCTTCATTCTGGTGTAAGT+AGG | + | chr8.2:25387752-25387771 | None:intergenic | 35.0% | |
| ATGTGACATGAGAATACAAG+GGG | + | chr8.2:25387692-25387711 | None:intergenic | 35.0% | |
| ATTGAAATTCACGCGCTTAT+TGG | - | chr8.2:25387954-25387973 | MS.gene56803:intron | 35.0% | |
| CATGGAAAATGATGGTACTT+GGG | - | chr8.2:25387573-25387592 | MS.gene56803:CDS | 35.0% | |
| CCAACAAAACCTAAAATCGA+AGG | + | chr8.2:25389936-25389955 | None:intergenic | 35.0% | |
| CGTAGGTAAGTAACATACTT+AGG | + | chr8.2:25388096-25388115 | None:intergenic | 35.0% | |
| CTTACACCAGAATGAAGATT+GGG | - | chr8.2:25387753-25387772 | MS.gene56803:intron | 35.0% | |
| CTTTCTGAACTGTCCATAAT+TGG | - | chr8.2:25389662-25389681 | MS.gene56803:intron | 35.0% | |
| GAGTTTCTAATAGCAGAACA+AGG | - | chr8.2:25389550-25389569 | MS.gene56803:intron | 35.0% | |
| GATGTGACATGAGAATACAA+GGG | + | chr8.2:25387693-25387712 | None:intergenic | 35.0% | |
| GGAGGAATTAAACATGTTCA+AGG | + | chr8.2:25387670-25387689 | None:intergenic | 35.0% | |
| GGGACTTCATCTTCAATAAA+GGG | + | chr8.2:25387532-25387551 | None:intergenic | 35.0% | |
| GTTTATTCTGATATGAGGTG+TGG | - | chr8.2:25388367-25388386 | MS.gene56803:intron | 35.0% | |
| TAACTCTTATCTCGAATTCC+TGG | - | chr8.2:25389755-25389774 | MS.gene56803:intron | 35.0% | |
| TAGTAACATATGCATCCATC+GGG | - | chr8.2:25387636-25387655 | MS.gene56803:intron | 35.0% | |
| TCTGGCAATAATCATCGAAT+GGG | + | chr8.2:25387552-25387571 | None:intergenic | 35.0% | |
| TGACAATTATTATGAGACGG+AGG | - | chr8.2:25388882-25388901 | MS.gene56803:CDS | 35.0% | |
| TGGGACTTCATCTTCAATAA+AGG | + | chr8.2:25387533-25387552 | None:intergenic | 35.0% | |
| TGTTCATATCTTCAACTTGC+TGG | - | chr8.2:25388230-25388249 | MS.gene56803:intron | 35.0% | |
| TTAAAGGATGATCCTTGTGA+TGG | - | chr8.2:25389121-25389140 | MS.gene56803:intron | 35.0% | |
| TTACACCAGAATGAAGATTG+GGG | - | chr8.2:25387754-25387773 | MS.gene56803:intron | 35.0% | |
| TTCACACAATTGAAGGTCTT+AGG | + | chr8.2:25388123-25388142 | None:intergenic | 35.0% | |
| ! | AGTAAGAAAACTTTTCAGCC+CGG | - | chr8.2:25389335-25389354 | MS.gene56803:intron | 35.0% |
| ! | CGACAATTAATTTGAAACGG+AGG | + | chr8.2:25388644-25388663 | None:intergenic | 35.0% |
| ! | GTTGGTGTTTAGTTTCCTTT+GGG | - | chr8.2:25389951-25389970 | MS.gene56803:intron | 35.0% |
| ! | TGAGAAGCACAAAGAAAACA+TGG | - | chr8.2:25389809-25389828 | MS.gene56803:intron | 35.0% |
| ! | TGTTGGTGTTTAGTTTCCTT+TGG | - | chr8.2:25389950-25389969 | MS.gene56803:intron | 35.0% |
| ! | TGTTTAGTTTCCTTTGGGTT+GGG | - | chr8.2:25389956-25389975 | MS.gene56803:intron | 35.0% |
| ! | TTCTAGGTCTTATCATGATG+GGG | - | chr8.2:25389078-25389097 | MS.gene56803:intron | 35.0% |
| ! | TTCTTACTAGCTTCAGCATA+CGG | + | chr8.2:25389323-25389342 | None:intergenic | 35.0% |
| ! | TTTGATGCTTTATTCGGGTA+TGG | - | chr8.2:25389050-25389069 | MS.gene56803:intron | 35.0% |
| !! | CTAGAAATTTGAGAAGCACT+TGG | + | chr8.2:25387901-25387920 | None:intergenic | 35.0% |
| !!! | ATTTCTTTTTTGAACCGCAC+GGG | + | chr8.2:25390113-25390132 | None:intergenic | 35.0% |
| !!! | CCTTCGATTTTAGGTTTTGT+TGG | - | chr8.2:25389933-25389952 | MS.gene56803:intron | 35.0% |
| !!! | CGTATCTTTTTTGTTCCTTC+TGG | + | chr8.2:25390403-25390422 | None:intergenic | 35.0% |
| AAACTACTTGAGCCACATGT+TGG | + | chr8.2:25388578-25388597 | None:intergenic | 40.0% | |
| AAAGGGATTTCTGCAAAAGC+TGG | - | chr8.2:25390426-25390445 | MS.gene56803:CDS | 40.0% | |
| AGACGGAGGAAGATCATTTA+AGG | - | chr8.2:25388896-25388915 | MS.gene56803:CDS | 40.0% | |
| CACAGAAGATTCCTAGAAAC+AGG | - | chr8.2:25390082-25390101 | MS.gene56803:intron | 40.0% | |
| CACATCGCAACAAAATGACA+AGG | - | chr8.2:25389899-25389918 | MS.gene56803:intron | 40.0% | |
| CCATGGAAAATGATGGTACT+TGG | - | chr8.2:25387572-25387591 | MS.gene56803:CDS | 40.0% | |
| CTATGCAGAACATGTTTCCT+CGG | - | chr8.2:25387982-25388001 | MS.gene56803:intron | 40.0% | |
| CTTCAGATCTTACCAACATG+TGG | - | chr8.2:25388563-25388582 | MS.gene56803:intron | 40.0% | |
| GACGGAGGAAGATCATTTAA+GGG | - | chr8.2:25388897-25388916 | MS.gene56803:CDS | 40.0% | |
| GACTCCACAGTACTTACAAA+TGG | + | chr8.2:25388048-25388067 | None:intergenic | 40.0% | |
| GAGGAAGATCATTTAAGGGA+TGG | - | chr8.2:25388901-25388920 | MS.gene56803:CDS | 40.0% | |
| GCACAAAGAAAACATGGTAG+AGG | - | chr8.2:25389815-25389834 | MS.gene56803:intron | 40.0% | |
| GTCACATCAACCGAAAGATA+GGG | - | chr8.2:25389289-25389308 | MS.gene56803:intron | 40.0% | |
| GTCTGGCAATAATCATCGAA+TGG | + | chr8.2:25387553-25387572 | None:intergenic | 40.0% | |
| TACACCAGAATGAAGATTGG+GGG | - | chr8.2:25387755-25387774 | MS.gene56803:intron | 40.0% | |
| TAGTACTCTCTGCGATTCTA+TGG | + | chr8.2:25388330-25388349 | None:intergenic | 40.0% | |
| TAGTTAGCGGAGTAGTTAAG+TGG | - | chr8.2:25388755-25388774 | MS.gene56803:intron | 40.0% | |
| TCGATGATCTCAAGTTCACA+TGG | - | chr8.2:25388021-25388040 | MS.gene56803:intron | 40.0% | |
| TGTGACATGAGAATACAAGG+GGG | + | chr8.2:25387691-25387710 | None:intergenic | 40.0% | |
| TTGAAACGGAGGGAGTAAAA+TGG | + | chr8.2:25388633-25388652 | None:intergenic | 40.0% | |
| ! | AGAAGCACACAAACAGAAAG+AGG | + | chr8.2:25389437-25389456 | None:intergenic | 40.0% |
| ! | CCAAGTACCATCATTTTCCA+TGG | + | chr8.2:25387575-25387594 | None:intergenic | 40.0% |
| ! | CTATCTTTCGGTTGATGTGA+CGG | + | chr8.2:25389290-25389309 | None:intergenic | 40.0% |
| ! | GTAAGAAAACTTTTCAGCCC+GGG | - | chr8.2:25389336-25389355 | MS.gene56803:intron | 40.0% |
| ! | GTGTTTAGTTTCCTTTGGGT+TGG | - | chr8.2:25389955-25389974 | MS.gene56803:intron | 40.0% |
| ! | TACCATCATTTTCCATGGTC+TGG | + | chr8.2:25387570-25387589 | None:intergenic | 40.0% |
| ! | TGGTCCATTTGTAAGTACTG+TGG | - | chr8.2:25388041-25388060 | MS.gene56803:intron | 40.0% |
| ! | TTCGGGTATGGTGTTTTTCT+AGG | - | chr8.2:25389062-25389081 | MS.gene56803:intron | 40.0% |
| !! | CTGTTTCTAGGAATCTTCTG+TGG | + | chr8.2:25390084-25390103 | None:intergenic | 40.0% |
| !! | GGGAGCATTATAATAGTGTG+CGG | - | chr8.2:25389098-25389117 | MS.gene56803:intron | 40.0% |
| !! | GGTTTTCTAGCCCTATCTTT+CGG | + | chr8.2:25389302-25389321 | None:intergenic | 40.0% |
| !! | GTTTAGTTTCCTTTGGGTTG+GGG | - | chr8.2:25389957-25389976 | MS.gene56803:intron | 40.0% |
| CGAGGAAACATGTTCTGCAT+AGG | + | chr8.2:25387984-25388003 | None:intergenic | 45.0% | |
| CGATGATTATTGCCAGACCA+TGG | - | chr8.2:25387555-25387574 | MS.gene56803:CDS | 45.0% | |
| CGTCACATCAACCGAAAGAT+AGG | - | chr8.2:25389288-25389307 | MS.gene56803:intron | 45.0% | |
| CTGTGGTTAATCCCGATAGA+AGG | + | chr8.2:25390067-25390086 | None:intergenic | 45.0% | |
| GAAAATGATGGTACTTGGGC+TGG | - | chr8.2:25387577-25387596 | MS.gene56803:CDS | 45.0% | |
| GACTCAGTGACACGTGATAT+GGG | - | chr8.2:25390465-25390484 | MS.gene56803:CDS | 45.0% | |
| GTTAATCCCGATAGAAGGAG+CGG | + | chr8.2:25390062-25390081 | None:intergenic | 45.0% | |
| TACACCCCCAATCTTCATTC+TGG | + | chr8.2:25387762-25387781 | None:intergenic | 45.0% | |
| TGAAGGTCTTAGGATACCGT+AGG | + | chr8.2:25388113-25388132 | None:intergenic | 45.0% | |
| TGACTCAGTGACACGTGATA+TGG | - | chr8.2:25390464-25390483 | MS.gene56803:CDS | 45.0% | |
| TGCCAGACCATGGAAAATGA+TGG | - | chr8.2:25387565-25387584 | MS.gene56803:CDS | 45.0% | |
| TTCAGATAATGTCTGCCGAG+TGG | - | chr8.2:25390236-25390255 | MS.gene56803:intron | 45.0% | |
| TTCTGATTGCCTTCCTAGTC+AGG | - | chr8.2:25389594-25389613 | MS.gene56803:intron | 45.0% | |
| ! | ATGTGACGGTGCTGAAAGAT+CGG | + | chr8.2:25389276-25389295 | None:intergenic | 45.0% |
| ! | TAGTACTAGCCTGACTAGGA+AGG | + | chr8.2:25389606-25389625 | None:intergenic | 45.0% |
| !! | AGCTTGTTGTGGAACTTCGT+CGG | - | chr8.2:25390137-25390156 | MS.gene56803:intron | 45.0% |
| !! | CAGATTCTAGAGCAGGTGAA+TGG | - | chr8.2:25389508-25389527 | MS.gene56803:intron | 45.0% |
| !! | CTGCTCTAGAATCTGCAACA+AGG | + | chr8.2:25389503-25389522 | None:intergenic | 45.0% |
| !! | CTTGTTGCAGATTCTAGAGC+AGG | - | chr8.2:25389501-25389520 | MS.gene56803:intron | 45.0% |
| !! | TCAACTTGCTGGAAGACTCT+AGG | - | chr8.2:25388241-25388260 | MS.gene56803:intron | 45.0% |
| !! | TTTGTTCCTTCTGGAGTCAG+TGG | + | chr8.2:25390394-25390413 | None:intergenic | 45.0% |
| AAGGTGGTTATGGCTGGAAG+TGG | - | chr8.2:25389365-25389384 | MS.gene56803:intron | 50.0% | |
| ATAACCACCTTTACCGACCC+GGG | + | chr8.2:25389356-25389375 | None:intergenic | 50.0% | |
| ATGGTAGAGGAGAGCAGTCA+CGG | - | chr8.2:25389828-25389847 | MS.gene56803:intron | 50.0% | |
| CATAACCACCTTTACCGACC+CGG | + | chr8.2:25389357-25389376 | None:intergenic | 50.0% | |
| CCTAGTCAGGCTAGTACTAC+TGG | - | chr8.2:25389607-25389626 | MS.gene56803:intron | 50.0% | |
| CTCGAATTCCTGGGATCTTC+AGG | - | chr8.2:25389765-25389784 | MS.gene56803:intron | 50.0% | |
| GACATGAGAATACAAGGGGG+AGG | + | chr8.2:25387688-25387707 | None:intergenic | 50.0% | |
| GGCTGGACATTGGAATTTGC+AGG | - | chr8.2:25387594-25387613 | MS.gene56803:CDS | 50.0% | |
| GTTCTTGCCGCTCCTTCTAT+CGG | - | chr8.2:25390052-25390071 | MS.gene56803:intron | 50.0% | |
| TCGGTAAAGGTGGTTATGGC+TGG | - | chr8.2:25389359-25389378 | MS.gene56803:intron | 50.0% | |
| TGCAGAACATGTTTCCTCGG+TGG | - | chr8.2:25387985-25388004 | MS.gene56803:intron | 50.0% | |
| TTCTTGCCGCTCCTTCTATC+GGG | - | chr8.2:25390053-25390072 | MS.gene56803:intron | 50.0% | |
| ! | AGATTGGGGGTGTACCATAG+TGG | - | chr8.2:25387768-25387787 | MS.gene56803:intron | 50.0% |
| ! | ATGGTACTTGGGCTGGACAT+TGG | - | chr8.2:25387584-25387603 | MS.gene56803:CDS | 50.0% |
| ! | CCAGTAGTACTAGCCTGACT+AGG | + | chr8.2:25389610-25389629 | None:intergenic | 50.0% |
| ! | CTTGTTGTGGAACTTCGTCG+GGG | - | chr8.2:25390139-25390158 | MS.gene56803:intron | 50.0% |
| ! | GAAAACTTTTCAGCCCGGGT+CGG | - | chr8.2:25389340-25389359 | MS.gene56803:intron | 50.0% |
| !! | ATCCTTGTGATGGACCTGCA+AGG | - | chr8.2:25389131-25389150 | MS.gene56803:intron | 50.0% |
| !! | GCTTGTTGTGGAACTTCGTC+GGG | - | chr8.2:25390138-25390157 | MS.gene56803:intron | 50.0% |
| CATCGCAACCTGAAGATCCC+AGG | + | chr8.2:25389776-25389795 | None:intergenic | 55.0% | |
| CGGGTCGGTAAAGGTGGTTA+TGG | - | chr8.2:25389355-25389374 | MS.gene56803:intron | 55.0% | |
| GACCTTGCAGGTCCATCACA+AGG | + | chr8.2:25389136-25389155 | None:intergenic | 55.0% | |
| GGATCACTTCCCCAACCCAA+AGG | + | chr8.2:25389969-25389988 | None:intergenic | 55.0% | |
| TTCAAGGGCTACTCACCCGA+TGG | + | chr8.2:25387654-25387673 | None:intergenic | 55.0% | |
| ! | TTTTCAGCCCGGGTCGGTAA+AGG | - | chr8.2:25389346-25389365 | MS.gene56803:intron | 55.0% |
| !! | ACCAAGCCACTGACTCCAGA+AGG | - | chr8.2:25390385-25390404 | MS.gene56803:CDS | 55.0% |
| !! | TCCTTCTGGAGTCAGTGGCT+TGG | + | chr8.2:25390389-25390408 | None:intergenic | 55.0% |
| AGAAACAGGGTCTGCCCGTG+CGG | - | chr8.2:25390096-25390115 | MS.gene56803:intron | 60.0% | |
| ! | CACGGGCAGACCCTGTTTCT+AGG | + | chr8.2:25390096-25390115 | None:intergenic | 60.0% |
| TCAGCCCGGGTCGGTAAAGG+TGG | - | chr8.2:25389349-25389368 | MS.gene56803:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 25387520 | 25390503 | 25387520 | ID=MS.gene56803 |
| chr8.2 | mRNA | 25387520 | 25390503 | 25387520 | ID=MS.gene56803.t1;Parent=MS.gene56803 |
| chr8.2 | exon | 25390366 | 25390503 | 25390366 | ID=MS.gene56803.t1.exon1;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25390366 | 25390503 | 25390366 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| chr8.2 | exon | 25389969 | 25390033 | 25389969 | ID=MS.gene56803.t1.exon2;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25389969 | 25390033 | 25389969 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| chr8.2 | exon | 25388855 | 25388939 | 25388855 | ID=MS.gene56803.t1.exon3;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25388855 | 25388939 | 25388855 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| chr8.2 | exon | 25388608 | 25388757 | 25388608 | ID=MS.gene56803.t1.exon4;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25388608 | 25388757 | 25388608 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| chr8.2 | exon | 25388395 | 25388512 | 25388395 | ID=MS.gene56803.t1.exon5;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25388395 | 25388512 | 25388395 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| chr8.2 | exon | 25388103 | 25388236 | 25388103 | ID=MS.gene56803.t1.exon6;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25388103 | 25388236 | 25388103 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| chr8.2 | exon | 25387839 | 25387936 | 25387839 | ID=MS.gene56803.t1.exon7;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25387839 | 25387936 | 25387839 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| chr8.2 | exon | 25387520 | 25387640 | 25387520 | ID=MS.gene56803.t1.exon8;Parent=MS.gene56803.t1 |
| chr8.2 | CDS | 25387520 | 25387640 | 25387520 | ID=cds.MS.gene56803.t1;Parent=MS.gene56803.t1 |
| Gene Sequence |
| Protein sequence |
