Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56980.t1 | XP_013453511.1 | 97 | 164 | 5 | 0 | 1 | 164 | 6 | 169 | 1.50E-87 | 332 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56980.t1 | Q9SE93 | 53.0 | 166 | 74 | 1 | 3 | 164 | 8 | 173 | 2.4e-49 | 196.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56980.t1 | A0A072UEL6 | 97.0 | 164 | 5 | 0 | 1 | 164 | 6 | 169 | 1.1e-87 | 332.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene56980 | 0.814835 | 1.26E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene56980 | 0.802828 | 4.66E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene56980 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene56980 | 0.806459 | 8.14E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene56980 | 0.810767 | 9.79E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene56980 | 0.809569 | 1.77E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene56980 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene057451 | MS.gene56980 | -0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene56980 | 0.821803 | 3.32E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene56980 | 0.805668 | 1.19E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene56980 | 0.825113 | 5.59E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56980.t1 | MTR_5g018365 | 96.951 | 164 | 5 | 0 | 1 | 164 | 6 | 169 | 4.66e-117 | 332 |
| MS.gene56980.t1 | MTR_5g018350 | 74.390 | 164 | 42 | 0 | 1 | 164 | 1 | 164 | 9.30e-86 | 252 |
| MS.gene56980.t1 | MTR_8g079120 | 61.875 | 160 | 61 | 0 | 5 | 164 | 51 | 210 | 2.40e-71 | 214 |
| MS.gene56980.t1 | MTR_8g079120 | 61.875 | 160 | 61 | 0 | 5 | 164 | 9 | 168 | 1.85e-70 | 213 |
| MS.gene56980.t1 | MTR_8g007675 | 46.296 | 162 | 81 | 3 | 7 | 164 | 32 | 191 | 1.70e-44 | 148 |
| MS.gene56980.t1 | MTR_5g018320 | 43.558 | 163 | 85 | 2 | 7 | 164 | 5 | 165 | 9.69e-41 | 137 |
| MS.gene56980.t1 | MTR_5g018300 | 41.615 | 161 | 87 | 2 | 5 | 160 | 6 | 164 | 2.00e-39 | 134 |
| MS.gene56980.t1 | MTR_8g008505 | 42.857 | 161 | 89 | 2 | 6 | 164 | 27 | 186 | 9.08e-39 | 133 |
| MS.gene56980.t1 | MTR_3g464040 | 41.975 | 162 | 87 | 2 | 6 | 164 | 18 | 175 | 1.60e-38 | 132 |
| MS.gene56980.t1 | MTR_8g008500 | 43.293 | 164 | 88 | 3 | 6 | 164 | 26 | 189 | 3.46e-38 | 132 |
| MS.gene56980.t1 | MTR_8g007670 | 43.373 | 166 | 84 | 5 | 1 | 160 | 1 | 162 | 1.07e-37 | 130 |
| MS.gene56980.t1 | MTR_8g007670 | 52.294 | 109 | 52 | 0 | 1 | 109 | 1 | 109 | 3.79e-37 | 127 |
| MS.gene56980.t1 | MTR_8g008660 | 52.885 | 104 | 49 | 0 | 6 | 109 | 26 | 129 | 1.09e-36 | 127 |
| MS.gene56980.t1 | MTR_5g018280 | 50.943 | 106 | 52 | 0 | 5 | 110 | 6 | 111 | 2.06e-35 | 124 |
| MS.gene56980.t1 | MTR_3g093730 | 47.115 | 104 | 55 | 0 | 4 | 107 | 33 | 136 | 3.44e-32 | 115 |
| MS.gene56980.t1 | MTR_3g093730 | 47.115 | 104 | 55 | 0 | 4 | 107 | 33 | 136 | 1.49e-31 | 114 |
| MS.gene56980.t1 | MTR_5g068100 | 47.573 | 103 | 54 | 0 | 5 | 107 | 28 | 130 | 2.13e-30 | 111 |
| MS.gene56980.t1 | MTR_7g015220 | 47.619 | 105 | 55 | 0 | 6 | 110 | 123 | 227 | 5.47e-28 | 107 |
| MS.gene56980.t1 | MTR_3g005410 | 46.552 | 116 | 62 | 0 | 1 | 116 | 88 | 203 | 9.62e-28 | 105 |
| MS.gene56980.t1 | MTR_1g034410 | 53.165 | 79 | 17 | 3 | 28 | 93 | 39 | 110 | 5.39e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56980.t1 | AT2G23600 | 47.904 | 167 | 83 | 3 | 2 | 164 | 19 | 185 | 3.81e-55 | 172 |
| MS.gene56980.t1 | AT2G23620 | 53.750 | 160 | 69 | 3 | 3 | 160 | 5 | 161 | 3.88e-55 | 174 |
| MS.gene56980.t1 | AT2G23600 | 48.193 | 166 | 82 | 3 | 3 | 164 | 20 | 185 | 6.17e-54 | 172 |
| MS.gene56980.t1 | AT2G23600 | 48.193 | 166 | 82 | 3 | 3 | 164 | 5 | 170 | 6.45e-54 | 171 |
| MS.gene56980.t1 | AT5G10300 | 52.410 | 166 | 73 | 2 | 3 | 164 | 2 | 165 | 7.80e-52 | 164 |
| MS.gene56980.t1 | AT5G10300 | 52.410 | 166 | 73 | 2 | 3 | 164 | 2 | 165 | 4.49e-51 | 164 |
| MS.gene56980.t1 | AT2G23590 | 46.250 | 160 | 81 | 1 | 5 | 164 | 25 | 179 | 2.76e-50 | 162 |
| MS.gene56980.t1 | AT2G23580 | 47.904 | 167 | 82 | 3 | 3 | 164 | 4 | 170 | 3.86e-49 | 157 |
| MS.gene56980.t1 | AT2G23610 | 44.910 | 167 | 88 | 2 | 2 | 164 | 4 | 170 | 6.62e-49 | 159 |
| MS.gene56980.t1 | AT2G23580 | 47.904 | 167 | 82 | 3 | 3 | 164 | 4 | 170 | 9.27e-49 | 158 |
| MS.gene56980.t1 | AT2G23550 | 49.080 | 163 | 78 | 3 | 2 | 159 | 10 | 172 | 2.05e-48 | 155 |
| MS.gene56980.t1 | AT2G23550 | 49.080 | 163 | 78 | 3 | 2 | 159 | 10 | 172 | 1.31e-47 | 155 |
| MS.gene56980.t1 | AT2G23550 | 49.080 | 163 | 78 | 3 | 2 | 159 | 3 | 165 | 1.50e-47 | 155 |
| MS.gene56980.t1 | AT2G23610 | 53.600 | 125 | 57 | 1 | 2 | 125 | 4 | 128 | 6.15e-47 | 152 |
| MS.gene56980.t1 | AT2G23560 | 42.683 | 164 | 92 | 2 | 3 | 164 | 4 | 167 | 1.84e-44 | 147 |
| MS.gene56980.t1 | AT3G50440 | 42.857 | 161 | 88 | 1 | 8 | 164 | 22 | 182 | 8.49e-43 | 143 |
| MS.gene56980.t1 | AT4G37150 | 52.941 | 119 | 56 | 0 | 6 | 124 | 2 | 120 | 1.74e-42 | 142 |
| MS.gene56980.t1 | AT4G37140 | 53.636 | 110 | 51 | 0 | 5 | 114 | 1 | 110 | 1.89e-40 | 133 |
| MS.gene56980.t1 | AT4G37140 | 56.044 | 91 | 40 | 0 | 6 | 96 | 2 | 92 | 1.79e-33 | 114 |
| MS.gene56980.t1 | AT3G10870 | 45.283 | 106 | 58 | 0 | 2 | 107 | 15 | 120 | 1.98e-31 | 114 |
| MS.gene56980.t1 | AT2G23550 | 40.123 | 162 | 65 | 3 | 2 | 159 | 3 | 136 | 1.02e-30 | 111 |
| MS.gene56980.t1 | AT3G29770 | 53.922 | 102 | 47 | 0 | 6 | 107 | 137 | 238 | 1.72e-29 | 111 |
| MS.gene56980.t1 | AT1G33990 | 47.748 | 111 | 58 | 0 | 6 | 116 | 96 | 206 | 1.99e-28 | 107 |
| MS.gene56980.t1 | AT4G09900 | 46.903 | 113 | 60 | 0 | 4 | 116 | 95 | 207 | 2.97e-28 | 107 |
| MS.gene56980.t1 | AT1G69240 | 47.059 | 102 | 54 | 0 | 6 | 107 | 186 | 287 | 2.07e-26 | 103 |
| MS.gene56980.t1 | AT1G26360 | 47.059 | 102 | 54 | 0 | 6 | 107 | 188 | 289 | 8.00e-26 | 102 |
| MS.gene56980.t1 | AT5G58310 | 34.884 | 172 | 96 | 4 | 5 | 164 | 3 | 170 | 1.10e-25 | 99.0 |
| MS.gene56980.t1 | AT4G16690 | 47.525 | 101 | 53 | 0 | 7 | 107 | 12 | 112 | 6.39e-25 | 97.1 |
| MS.gene56980.t1 | AT3G29770 | 50.000 | 74 | 37 | 0 | 6 | 79 | 137 | 210 | 4.86e-16 | 73.6 |
| MS.gene56980.t1 | AT2G23570 | 43.023 | 86 | 45 | 1 | 83 | 164 | 1 | 86 | 1.76e-14 | 67.8 |
Find 25 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGTTTGTGTTGAGTATC+AGG | 0.310434 | 5.1:-10455094 | None:intergenic |
| ATTGAGAGATACCCGGTTAC+TGG | 0.326715 | 5.1:+10456019 | MS.gene56980:CDS |
| GTTCTTGTTGGACATAGCTT+TGG | 0.363914 | 5.1:+10454995 | MS.gene56980:CDS |
| GTGTCTAACCATCCAGTAAC+CGG | 0.382878 | 5.1:-10456031 | None:intergenic |
| GAGTATGCTAAGCCTTTGTT+AGG | 0.417352 | 5.1:+10454938 | MS.gene56980:CDS |
| CTTGTTGGACATAGCTTTGG+AGG | 0.435184 | 5.1:+10454998 | MS.gene56980:CDS |
| ACCATCATATGTTCTAGAAC+AGG | 0.465534 | 5.1:+10455111 | MS.gene56980:CDS |
| AACAAAATGCTGTTGTTACC+TGG | 0.480280 | 5.1:+10456073 | MS.gene56980:CDS |
| CTAGTACATGGTGTTAGCGT+TGG | 0.485280 | 5.1:+10454794 | MS.gene56980:CDS |
| ATGGTGTTAGCGTTGGAGCT+TGG | 0.496712 | 5.1:+10454801 | MS.gene56980:CDS |
| ACCTGTTCTAGAACATATGA+TGG | 0.511075 | 5.1:-10455112 | None:intergenic |
| CTTTCAACTCTGCTCCATTG+AGG | 0.515282 | 5.1:+10456120 | MS.gene56980:CDS |
| TTAGCGTTGGAGCTTGGAGT+TGG | 0.518739 | 5.1:+10454807 | MS.gene56980:CDS |
| GGCACAATTAAGTACCTCAA+TGG | 0.530565 | 5.1:-10456134 | None:intergenic |
| GTAGACAAGAACTTTGAGCC+AGG | 0.559075 | 5.1:-10456091 | None:intergenic |
| TATCAGGAATAAAAGCTGCT+AGG | 0.583140 | 5.1:-10455078 | None:intergenic |
| AGAGATACCCGGTTACTGGA+TGG | 0.592966 | 5.1:+10456023 | MS.gene56980:CDS |
| AATGAGTATAGCTCTTGCAA+TGG | 0.600234 | 5.1:+10455021 | MS.gene56980:CDS |
| ACACTTGACCTTGCAGCTAG+TGG | 0.615932 | 5.1:+10454875 | MS.gene56980:CDS |
| TGACCTACAGATTCTAACTG+TGG | 0.617711 | 5.1:-10454842 | None:intergenic |
| TGTCTAACCATCCAGTAACC+GGG | 0.625170 | 5.1:-10456030 | None:intergenic |
| TGTTGATGCCACTAGCTGCA+AGG | 0.665739 | 5.1:-10454883 | None:intergenic |
| AAACCACAGTTAGAATCTGT+AGG | 0.674566 | 5.1:+10454839 | MS.gene56980:CDS |
| GAGGCTAAGAAGCCTAACAA+AGG | 0.687792 | 5.1:-10454950 | None:intergenic |
| ATAGTATATTGAGAGATACC+CGG | 0.707415 | 5.1:+10456012 | MS.gene56980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATCTAATTTATCA+AGG | - | chr5.1:10455931-10455950 | None:intergenic | 10.0% |
| !!! | AATATTTATTAGTTTAGTTA+TGG | + | chr5.1:10455494-10455513 | MS.gene56980:intron | 10.0% |
| !!! | ATATTTATTAGTTTAGTTAT+GGG | + | chr5.1:10455495-10455514 | MS.gene56980:intron | 10.0% |
| !!! | AATATTGTTAATTTTCTTAG+TGG | + | chr5.1:10455219-10455238 | MS.gene56980:intron | 15.0% |
| !! | ATATAGTGATTATACCTAAA+GGG | - | chr5.1:10455806-10455825 | None:intergenic | 20.0% |
| !! | TATATAGTGATTATACCTAA+AGG | - | chr5.1:10455807-10455826 | None:intergenic | 20.0% |
| !!! | ACACCTTCTAAAAAAATAAA+CGG | - | chr5.1:10455683-10455702 | None:intergenic | 20.0% |
| !!! | TGATGATATTTGTTTTAAGT+TGG | + | chr5.1:10455469-10455488 | MS.gene56980:intron | 20.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | - | chr5.1:10455575-10455594 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | - | chr5.1:10455722-10455741 | None:intergenic | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+GGG | + | chr5.1:10455765-10455784 | MS.gene56980:intron | 25.0% |
| ! | TATAGTGATTATACCTAAAG+GGG | - | chr5.1:10455805-10455824 | None:intergenic | 25.0% |
| ! | TTATCCTAGTTTACATTTGA+TGG | - | chr5.1:10455292-10455311 | None:intergenic | 25.0% |
| ! | TTTACCATCAAATGTAAACT+AGG | + | chr5.1:10455285-10455304 | MS.gene56980:intron | 25.0% |
| ! | TTTCCTGAAAAAATTGAAGT+TGG | + | chr5.1:10455049-10455068 | MS.gene56980:CDS | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr5.1:10455617-10455636 | MS.gene56980:intron | 25.0% |
| !! | CACCTTCTAAAAAAATAAAC+GGG | - | chr5.1:10455682-10455701 | None:intergenic | 25.0% |
| !! | TTTTAGCAATATTCACCTTA+AGG | + | chr5.1:10455704-10455723 | MS.gene56980:intron | 25.0% |
| !!! | ATTCCAACTTCAATTTTTTC+AGG | - | chr5.1:10455055-10455074 | None:intergenic | 25.0% |
| AAAAAAATACGTCAACAGCA+GGG | + | chr5.1:10455378-10455397 | MS.gene56980:intron | 30.0% | |
| AATGAAAAAGTGGTTCTTGT+TGG | + | chr5.1:10454983-10455002 | MS.gene56980:CDS | 30.0% | |
| ACTTGATCCAAATGAAAAAG+TGG | + | chr5.1:10454973-10454992 | MS.gene56980:CDS | 30.0% | |
| ATAGTATATTGAGAGATACC+CGG | + | chr5.1:10456012-10456031 | MS.gene56980:intron | 30.0% | |
| CACACCTTAATAAAAACTAG+TGG | + | chr5.1:10455764-10455783 | MS.gene56980:intron | 30.0% | |
| TAAAAAAATACGTCAACAGC+AGG | + | chr5.1:10455377-10455396 | MS.gene56980:intron | 30.0% | |
| ! | AAGCATTTTGTTCTAGTACA+TGG | + | chr5.1:10454782-10454801 | MS.gene56980:CDS | 30.0% |
| ! | ACTTGGATCATTTTGTGATA+TGG | + | chr5.1:10455989-10456008 | MS.gene56980:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr5.1:10455616-10455635 | MS.gene56980:intron | 30.0% |
| ! | GAACAAAATGCTTCTGTTTT+TGG | - | chr5.1:10454775-10454794 | None:intergenic | 30.0% |
| ! | TTAGACACTGAGTTTTCATT+TGG | + | chr5.1:10456046-10456065 | MS.gene56980:CDS | 30.0% |
| ! | TTTTTCATTTGGATCAAGTG+AGG | - | chr5.1:10454972-10454991 | None:intergenic | 30.0% |
| !!! | ACAAGAACCACTTTTTCATT+TGG | - | chr5.1:10454983-10455002 | None:intergenic | 30.0% |
| !!! | ACACCCACTAGTTTTTATTA+AGG | - | chr5.1:10455771-10455790 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr5.1:10455623-10455642 | None:intergenic | 30.0% |
| !!! | CACCCGTTTATTTTTTTAGA+AGG | + | chr5.1:10455677-10455696 | MS.gene56980:intron | 30.0% |
| AAACCACAGTTAGAATCTGT+AGG | + | chr5.1:10454839-10454858 | MS.gene56980:CDS | 35.0% | |
| AACAAAATGCTGTTGTTACC+TGG | + | chr5.1:10456073-10456092 | MS.gene56980:CDS | 35.0% | |
| AATGAGTATAGCTCTTGCAA+TGG | + | chr5.1:10455021-10455040 | MS.gene56980:CDS | 35.0% | |
| ACTCTCACATAAAAACCAGT+GGG | - | chr5.1:10455536-10455555 | None:intergenic | 35.0% | |
| AGACAGACTTGAAATCTGTT+GGG | - | chr5.1:10455425-10455444 | None:intergenic | 35.0% | |
| ATCACAAAATGATCCAAGTC+AGG | - | chr5.1:10455988-10456007 | None:intergenic | 35.0% | |
| TATCAGGAATAAAAGCTGCT+AGG | - | chr5.1:10455081-10455100 | None:intergenic | 35.0% | |
| TGTATGTTAGCAACTCCTAT+AGG | - | chr5.1:10455659-10455678 | None:intergenic | 35.0% | |
| TTTATTTACCTGACCTGACT+TGG | + | chr5.1:10455972-10455991 | MS.gene56980:intron | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+AGG | + | chr5.1:10455557-10455576 | MS.gene56980:intron | 35.0% |
| !! | ACCATCATATGTTCTAGAAC+AGG | + | chr5.1:10455111-10455130 | MS.gene56980:CDS | 35.0% |
| !! | ACCTGTTCTAGAACATATGA+TGG | - | chr5.1:10455115-10455134 | None:intergenic | 35.0% |
| AAAATGATCCAAGTCAGGTC+AGG | - | chr5.1:10455983-10456002 | None:intergenic | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | - | chr5.1:10455648-10455667 | None:intergenic | 40.0% | |
| CACTCTCACATAAAAACCAG+TGG | - | chr5.1:10455537-10455556 | None:intergenic | 40.0% | |
| GAGACAGACTTGAAATCTGT+TGG | - | chr5.1:10455426-10455445 | None:intergenic | 40.0% | |
| GAGTATGCTAAGCCTTTGTT+AGG | + | chr5.1:10454938-10454957 | MS.gene56980:CDS | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | + | chr5.1:10455641-10455660 | MS.gene56980:intron | 40.0% | |
| GTTCTTGTTGGACATAGCTT+TGG | + | chr5.1:10454995-10455014 | MS.gene56980:CDS | 40.0% | |
| TCAATATGTCCGAGTGGTTA+AGG | - | chr5.1:10455448-10455467 | None:intergenic | 40.0% | |
| TGACCTACAGATTCTAACTG+TGG | - | chr5.1:10454845-10454864 | None:intergenic | 40.0% | |
| ! | GACACTGAGTTTTCATTTGG+TGG | + | chr5.1:10456049-10456068 | MS.gene56980:CDS | 40.0% |
| ! | GATGGTTTGTGTTGAGTATC+AGG | - | chr5.1:10455097-10455116 | None:intergenic | 40.0% |
| ! | TATACCTAAAGGGGTTTGCT+AGG | - | chr5.1:10455796-10455815 | None:intergenic | 40.0% |
| AGTCTGTCTCCTTAACCACT+CGG | + | chr5.1:10455436-10455455 | MS.gene56980:intron | 45.0% | |
| ATTGAGAGATACCCGGTTAC+TGG | + | chr5.1:10456019-10456038 | MS.gene56980:CDS | 45.0% | |
| CATCAGTCAATATGTCCGAG+TGG | - | chr5.1:10455454-10455473 | None:intergenic | 45.0% | |
| GAGGCTAAGAAGCCTAACAA+AGG | - | chr5.1:10454953-10454972 | None:intergenic | 45.0% | |
| GTAGACAAGAACTTTGAGCC+AGG | - | chr5.1:10456094-10456113 | None:intergenic | 45.0% | |
| GTATCCTAGCAAACCCCTTT+AGG | + | chr5.1:10455789-10455808 | MS.gene56980:intron | 45.0% | |
| GTGTCTAACCATCCAGTAAC+CGG | - | chr5.1:10456034-10456053 | None:intergenic | 45.0% | |
| TGTCTAACCATCCAGTAACC+GGG | - | chr5.1:10456033-10456052 | None:intergenic | 45.0% | |
| ! | ATTTGCTAGAACACACCCAC+TGG | + | chr5.1:10455518-10455537 | MS.gene56980:intron | 45.0% |
| ! | CTAGTACATGGTGTTAGCGT+TGG | + | chr5.1:10454794-10454813 | MS.gene56980:CDS | 45.0% |
| !! | CTTGTTGGACATAGCTTTGG+AGG | + | chr5.1:10454998-10455017 | MS.gene56980:CDS | 45.0% |
| ACACTTGACCTTGCAGCTAG+TGG | + | chr5.1:10454875-10454894 | MS.gene56980:CDS | 50.0% | |
| AGAGATACCCGGTTACTGGA+TGG | + | chr5.1:10456023-10456042 | MS.gene56980:CDS | 50.0% | |
| TGTTGATGCCACTAGCTGCA+AGG | - | chr5.1:10454886-10454905 | None:intergenic | 50.0% | |
| ! | ATGGTGTTAGCGTTGGAGCT+TGG | + | chr5.1:10454801-10454820 | MS.gene56980:CDS | 50.0% |
| ! | TTAGCGTTGGAGCTTGGAGT+TGG | + | chr5.1:10454807-10454826 | MS.gene56980:CDS | 50.0% |
| AGCAGGGTTCGAACCTGCGC+GGG | + | chr5.1:10455394-10455413 | MS.gene56980:intron | 65.0% | |
| CAGCAGGGTTCGAACCTGCG+CGG | + | chr5.1:10455393-10455412 | MS.gene56980:intron | 65.0% | |
| CTGTTGGGCTTCGCCCGCGC+AGG | - | chr5.1:10455410-10455429 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 10454767 | 10456141 | 10454767 | ID=MS.gene56980 |
| chr5.1 | mRNA | 10454767 | 10456141 | 10454767 | ID=MS.gene56980.t1;Parent=MS.gene56980 |
| chr5.1 | exon | 10454767 | 10455132 | 10454767 | ID=MS.gene56980.t1.exon1;Parent=MS.gene56980.t1 |
| chr5.1 | CDS | 10454767 | 10455132 | 10454767 | ID=cds.MS.gene56980.t1;Parent=MS.gene56980.t1 |
| chr5.1 | exon | 10456016 | 10456141 | 10456016 | ID=MS.gene56980.t1.exon2;Parent=MS.gene56980.t1 |
| chr5.1 | CDS | 10456016 | 10456141 | 10456016 | ID=cds.MS.gene56980.t1;Parent=MS.gene56980.t1 |
| Gene Sequence |
| Protein sequence |
