Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57666.t1 | XP_003610042.1 | 75 | 548 | 30 | 2 | 1 | 441 | 1 | 548 | 3.00E-194 | 688 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57666.t1 | Q9SZR3 | 24.7 | 762 | 231 | 18 | 1 | 440 | 1 | 741 | 1.5e-29 | 132.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57666.t1 | G7JU94 | 75.0 | 548 | 30 | 2 | 1 | 441 | 1 | 548 | 2.1e-194 | 688.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene57666 | 0.801898 | 7.25E-49 | -1.69E-46 |
| MS.gene049418 | MS.gene57666 | 0.827573 | 1.45E-54 | -1.69E-46 |
| MS.gene050297 | MS.gene57666 | 0.805245 | 1.47E-49 | -1.69E-46 |
| MS.gene051067 | MS.gene57666 | 0.826351 | 2.85E-54 | -1.69E-46 |
| MS.gene051648 | MS.gene57666 | 0.808068 | 3.71E-50 | -1.69E-46 |
| MS.gene053536 | MS.gene57666 | 0.827825 | 1.26E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene57666 | 0.824806 | 6.61E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene57666 | 0.804013 | 2.65E-49 | -1.69E-46 |
| MS.gene054999 | MS.gene57666 | 0.809022 | 2.32E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene57666 | 0.832889 | 7.31E-56 | -1.69E-46 |
| MS.gene056169 | MS.gene57666 | 0.804701 | 1.90E-49 | -1.69E-46 |
| MS.gene056228 | MS.gene57666 | 0.811932 | 5.47E-51 | -1.69E-46 |
| MS.gene057004 | MS.gene57666 | 0.800932 | 1.14E-48 | -1.69E-46 |
| MS.gene057082 | MS.gene57666 | 0.819916 | 9.03E-53 | -1.69E-46 |
| MS.gene058197 | MS.gene57666 | 0.822034 | 2.94E-53 | -1.69E-46 |
| MS.gene058198 | MS.gene57666 | 0.812779 | 3.57E-51 | -1.69E-46 |
| MS.gene058823 | MS.gene57666 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene57666 | 0.817873 | 2.63E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene57666 | 0.835755 | 1.40E-56 | -1.69E-46 |
| MS.gene059424 | MS.gene57666 | 0.820444 | 6.84E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57666.t1 | MTR_4g127290 | 89.646 | 367 | 26 | 3 | 85 | 441 | 184 | 548 | 0.0 | 612 |
| MS.gene57666.t1 | MTR_4g127290 | 100.000 | 85 | 0 | 0 | 1 | 85 | 1 | 85 | 5.53e-49 | 179 |
| MS.gene57666.t1 | MTR_2g038200 | 50.148 | 337 | 118 | 11 | 148 | 441 | 399 | 728 | 1.12e-85 | 282 |
| MS.gene57666.t1 | MTR_2g038200 | 71.765 | 85 | 20 | 1 | 1 | 85 | 1 | 81 | 1.67e-25 | 110 |
| MS.gene57666.t1 | MTR_1g057150 | 53.684 | 95 | 37 | 1 | 1 | 95 | 1 | 88 | 9.80e-24 | 104 |
| MS.gene57666.t1 | MTR_4g129230 | 59.524 | 84 | 30 | 1 | 1 | 84 | 1 | 80 | 4.20e-20 | 94.0 |
| MS.gene57666.t1 | MTR_1g090640 | 54.651 | 86 | 31 | 2 | 1 | 85 | 1 | 79 | 2.40e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57666.t1 | AT4G29920 | 34.535 | 333 | 159 | 13 | 148 | 440 | 431 | 744 | 9.93e-35 | 137 |
| MS.gene57666.t1 | AT4G29920 | 65.169 | 89 | 27 | 3 | 1 | 85 | 1 | 89 | 1.22e-21 | 98.6 |
| MS.gene57666.t1 | AT4G29920 | 34.234 | 333 | 157 | 13 | 148 | 440 | 431 | 741 | 4.74e-34 | 135 |
| MS.gene57666.t1 | AT4G29920 | 65.169 | 89 | 27 | 3 | 1 | 85 | 1 | 89 | 1.17e-21 | 98.6 |
| MS.gene57666.t1 | AT5G57130 | 61.386 | 101 | 22 | 2 | 1 | 85 | 1 | 100 | 9.39e-27 | 114 |
| MS.gene57666.t1 | AT5G57130 | 29.538 | 325 | 183 | 14 | 147 | 441 | 468 | 776 | 2.40e-24 | 106 |
| MS.gene57666.t1 | AT3G52490 | 54.902 | 102 | 35 | 2 | 1 | 98 | 1 | 95 | 1.17e-25 | 110 |
| MS.gene57666.t1 | AT5G57710 | 57.143 | 84 | 32 | 1 | 1 | 84 | 1 | 80 | 3.85e-19 | 90.9 |
| MS.gene57666.t1 | AT4G30350 | 54.762 | 84 | 34 | 1 | 1 | 84 | 1 | 80 | 1.51e-17 | 85.9 |
Find 74 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATAGCATTTCAGAAAA+TGG | 0.180008 | 8.4:-7420032 | None:intergenic |
| AGAAGAAAACATTGCCTTTC+TGG | 0.197917 | 8.4:+7419187 | MS.gene57666:CDS |
| AGTTTAATTTCAATGATAAA+AGG | 0.216333 | 8.4:+7419634 | MS.gene57666:CDS |
| TGCCCCTATTCCAGTGATTT+TGG | 0.219820 | 8.4:-7419509 | None:intergenic |
| GTTTCAATGTAGCTCTTAAT+AGG | 0.268715 | 8.4:+7417868 | MS.gene57666:CDS |
| GCTTGACCCTTCATTCTTCC+AGG | 0.278647 | 8.4:+7418384 | MS.gene57666:CDS |
| GATTCCATTGCAAGCATAGA+AGG | 0.340258 | 8.4:+7419678 | MS.gene57666:CDS |
| AGCTGATTTGGTCCTTCAAT+TGG | 0.342833 | 8.4:+7419980 | MS.gene57666:CDS |
| CTAATAGCATTTCAGAAAAT+GGG | 0.352190 | 8.4:-7420031 | None:intergenic |
| ATTCTCTTGTGTTGGCTAGA+AGG | 0.358333 | 8.4:+7417697 | MS.gene57666:CDS |
| TTTGAAGGAACTTAGTCTTA+AGG | 0.360363 | 8.4:-7417769 | None:intergenic |
| TTTCAGACAGAACAATTTCA+TGG | 0.360555 | 8.4:+7418265 | MS.gene57666:CDS |
| AAAGCCCTTTAGCAGTAATA+AGG | 0.361117 | 8.4:+7419084 | MS.gene57666:CDS |
| TGGCACAGAAGAACAAAATA+AGG | 0.368675 | 8.4:+7419221 | MS.gene57666:CDS |
| GCACCAAAATCACTGGAATA+GGG | 0.370902 | 8.4:+7419506 | MS.gene57666:CDS |
| AGCACCAAAATCACTGGAAT+AGG | 0.372688 | 8.4:+7419505 | MS.gene57666:CDS |
| TAAGACTAAGTTCCTTCAAA+AGG | 0.375696 | 8.4:+7417772 | MS.gene57666:CDS |
| ATCATTGAAATTAAACTCAA+TGG | 0.376365 | 8.4:-7419628 | None:intergenic |
| CCTTTCTGGCTTCAGTCTCA+TGG | 0.390835 | 8.4:+7419201 | MS.gene57666:CDS |
| TTGTTTCCAGCATATGAGAT+AGG | 0.393515 | 8.4:-7419063 | None:intergenic |
| CTGTGATTCTCACTAGTTGA+AGG | 0.411339 | 8.4:-7418221 | None:intergenic |
| GTTTAATTTCAATGATAAAA+GGG | 0.427762 | 8.4:+7419635 | MS.gene57666:CDS |
| TGCACCTTATTACTGCTAAA+GGG | 0.429521 | 8.4:-7419088 | None:intergenic |
| GTGGATGTTGTGAAGTTTGA+TGG | 0.431778 | 8.4:-7417821 | None:intergenic |
| TTTGAAGCATTCTCTTGTGT+TGG | 0.454108 | 8.4:+7417689 | MS.gene57666:CDS |
| AATATTACCTGGAAGAATGA+AGG | 0.464963 | 8.4:-7418391 | None:intergenic |
| ATGCACCTTATTACTGCTAA+AGG | 0.466662 | 8.4:-7419089 | None:intergenic |
| AAGACTAAGTTCCTTCAAAA+GGG | 0.480191 | 8.4:+7417773 | MS.gene57666:CDS |
| AAAATGAAATTTCATTTACA+TGG | 0.483113 | 8.4:+7419883 | MS.gene57666:CDS |
| ACTGAGTTGACGAGTACATC+AGG | 0.485948 | 8.4:+7418353 | MS.gene57666:CDS |
| TTTACCTTCTATGCTTGCAA+TGG | 0.488616 | 8.4:-7419682 | None:intergenic |
| ACGGAATCGAGGTGTAAGAT+TGG | 0.504184 | 8.4:-7419586 | None:intergenic |
| AGATGCTCATCTTGGAATCA+AGG | 0.504959 | 8.4:-7419033 | None:intergenic |
| GTTCTGAGAGATGCTCATCT+TGG | 0.505466 | 8.4:-7419041 | None:intergenic |
| CAATGGTGCTGCATGATTGT+TGG | 0.507077 | 8.4:-7419611 | None:intergenic |
| AGCTCATTTCTCAGACCTGC+AGG | 0.512534 | 8.4:+7419162 | MS.gene57666:CDS |
| TGTTGTGAAGTTTGATGGTG+TGG | 0.518229 | 8.4:-7417816 | None:intergenic |
| ACAAACAGCACCAAAATCAC+TGG | 0.519494 | 8.4:+7419499 | MS.gene57666:CDS |
| TCAGAACCTATCTCATATGC+TGG | 0.523908 | 8.4:+7419057 | MS.gene57666:CDS |
| CCATGAGACTGAAGCCAGAA+AGG | 0.527419 | 8.4:-7419201 | None:intergenic |
| GAGAAAACATCAACAGCTTG+TGG | 0.530991 | 8.4:+7420061 | MS.gene57666:CDS |
| CACCAAAATCACTGGAATAG+GGG | 0.539949 | 8.4:+7419507 | MS.gene57666:CDS |
| ACGAGTACATCAGGTGGACT+TGG | 0.541210 | 8.4:+7418362 | MS.gene57666:CDS |
| TGATGATTCAAGTGAAAAGG+TGG | 0.542844 | 8.4:+7419734 | MS.gene57666:CDS |
| ATATATCAAGTGATGCGCTC+AGG | 0.544488 | 8.4:+7417621 | None:intergenic |
| TGTTGATTTGGTATCAAACA+AGG | 0.544854 | 8.4:-7419856 | None:intergenic |
| TGAAGCAGCCTCTGCTGTGA+GGG | 0.545563 | 8.4:-7417664 | None:intergenic |
| TGATGCTTGATGAATTATTG+AGG | 0.548945 | 8.4:-7419551 | None:intergenic |
| AAATGTTATAATAGTTCTGG+TGG | 0.549816 | 8.4:+7418173 | MS.gene57666:intron |
| CAATGATGATTCAAGTGAAA+AGG | 0.551243 | 8.4:+7419731 | MS.gene57666:CDS |
| CTTGCAATGGAATCAAAGAC+TGG | 0.557776 | 8.4:-7419669 | None:intergenic |
| ATATTACCTGGAAGAATGAA+GGG | 0.561317 | 8.4:-7418390 | None:intergenic |
| TGTTCTGTCTGAAACTGCTA+AGG | 0.561994 | 8.4:-7418256 | None:intergenic |
| TCACTAGTTGAAGGTGAACA+TGG | 0.565455 | 8.4:-7418212 | None:intergenic |
| GAATCGAGGTGTAAGATTGG+AGG | 0.571539 | 8.4:-7419583 | None:intergenic |
| GTAAAGATTAGTCTTGCACT+TGG | 0.591838 | 8.4:+7419708 | MS.gene57666:CDS |
| AAAGTGATGGCTACATGTAG+AGG | 0.593224 | 8.4:-7417741 | None:intergenic |
| TCAAGAGCTCTAGATTGAAG+TGG | 0.600534 | 8.4:-7417840 | None:intergenic |
| TCTTAAGGTAAGTAAAGTGA+TGG | 0.602666 | 8.4:-7417754 | None:intergenic |
| CTTGTGTTGGCTAGAAGGAG+AGG | 0.606431 | 8.4:+7417702 | MS.gene57666:CDS |
| CTGAAGCAGCCTCTGCTGTG+AGG | 0.607118 | 8.4:-7417665 | None:intergenic |
| GGAATAGTTTCAGATTGCCA+TGG | 0.614508 | 8.4:-7419819 | None:intergenic |
| GATTGTTGGCGACGGAATCG+AGG | 0.618402 | 8.4:-7419597 | None:intergenic |
| TGCTGCATGATTGTTGGCGA+CGG | 0.618752 | 8.4:-7419605 | None:intergenic |
| TAGCAGTAATAAGGTGCATG+AGG | 0.621940 | 8.4:+7419093 | MS.gene57666:CDS |
| TAATAGCATTTCAGAAAATG+GGG | 0.629233 | 8.4:-7420030 | None:intergenic |
| GATGATTCAAGTGAAAAGGT+GGG | 0.632079 | 8.4:+7419735 | MS.gene57666:CDS |
| TATCAAGTGATGCGCTCAGG+AGG | 0.632949 | 8.4:+7417624 | None:intergenic |
| TGTTATAATAGTTCTGGTGG+TGG | 0.635592 | 8.4:+7418176 | MS.gene57666:intron |
| GCAGCAGACCCTCACAGCAG+AGG | 0.647393 | 8.4:+7417656 | MS.gene57666:CDS |
| TAGAAGGAGAGGTCATCCAC+AGG | 0.649362 | 8.4:+7417713 | MS.gene57666:CDS |
| ACATGTAGAGGAGTGACCTG+TGG | 0.684775 | 8.4:-7417729 | None:intergenic |
| TATTGCAAGAGAATGTGCCA+TGG | 0.693666 | 8.4:+7419802 | MS.gene57666:CDS |
| GAGTTGACGAGTACATCAGG+TGG | 0.710146 | 8.4:+7418356 | MS.gene57666:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATTTCATTTACA+TGG | + | chr8.4:7419883-7419902 | MS.gene57666:CDS | 15.0% |
| !! | TTTAAATGTTATAATAGTTC+TGG | + | chr8.4:7418170-7418189 | MS.gene57666:intron | 15.0% |
| !!! | AGTTTAATTTCAATGATAAA+AGG | + | chr8.4:7419634-7419653 | MS.gene57666:CDS | 15.0% |
| !!! | GTTTAATTTCAATGATAAAA+GGG | + | chr8.4:7419635-7419654 | MS.gene57666:CDS | 15.0% |
| !!! | TTCTTAATTTGTTTGATTTA+AGG | + | chr8.4:7418534-7418553 | MS.gene57666:intron | 15.0% |
| !! | AAGCAAAATAAAATATTACC+TGG | - | chr8.4:7418405-7418424 | None:intergenic | 20.0% |
| !! | ATCATTGAAATTAAACTCAA+TGG | - | chr8.4:7419631-7419650 | None:intergenic | 20.0% |
| !! | CATTTAAAAACAGAATTAGA+AGG | - | chr8.4:7418158-7418177 | None:intergenic | 20.0% |
| !! | CCATAATTAAGCAAATAAAT+AGG | - | chr8.4:7418980-7418999 | None:intergenic | 20.0% |
| !! | CCTATTTATTTGCTTAATTA+TGG | + | chr8.4:7418977-7418996 | MS.gene57666:intron | 20.0% |
| !!! | ATGAATAATTCAACATTTTC+AGG | + | chr8.4:7419419-7419438 | MS.gene57666:intron | 20.0% |
| !!! | TGTTTGATTTAAGGTATAAA+AGG | + | chr8.4:7418543-7418562 | MS.gene57666:intron | 20.0% |
| !!! | TTATGTTTACCTTTCTTTTT+TGG | - | chr8.4:7418594-7418613 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTTTTGTTGATT+TGG | - | chr8.4:7419871-7419890 | None:intergenic | 20.0% |
| !!! | TTTACATGGTTATTTTTACA+AGG | + | chr8.4:7419897-7419916 | MS.gene57666:CDS | 20.0% |
| ! | AAAGACTACACTTTATCTAA+AGG | + | chr8.4:7418862-7418881 | MS.gene57666:intron | 25.0% |
| ! | AACACATGTTATGTTACTAA+AGG | - | chr8.4:7418516-7418535 | None:intergenic | 25.0% |
| ! | CTAATAGCATTTCAGAAAAT+GGG | - | chr8.4:7420034-7420053 | None:intergenic | 25.0% |
| ! | TAAATGCAACCAAAAAAGAA+AGG | + | chr8.4:7418582-7418601 | MS.gene57666:intron | 25.0% |
| ! | TAATAGCATTTCAGAAAATG+GGG | - | chr8.4:7420033-7420052 | None:intergenic | 25.0% |
| ! | TATAACACTTAGTACATGTT+TGG | + | chr8.4:7418435-7418454 | MS.gene57666:intron | 25.0% |
| ! | TCAATTGGATATGCTAAAAA+AGG | + | chr8.4:7419995-7420014 | MS.gene57666:CDS | 25.0% |
| !! | ATTCCATTTTCTTTTCAACT+CGG | - | chr8.4:7419454-7419473 | None:intergenic | 25.0% |
| !!! | AAATGTTATAATAGTTCTGG+TGG | + | chr8.4:7418173-7418192 | MS.gene57666:intron | 25.0% |
| !!! | ATGAGCTTCTTTTTCATAAT+TGG | - | chr8.4:7419149-7419168 | None:intergenic | 25.0% |
| !!! | TCAGTCAAATTATTTTGAGT+TGG | + | chr8.4:7418831-7418850 | MS.gene57666:intron | 25.0% |
| !!! | TTTTTAGCATATCCAATTGA+AGG | - | chr8.4:7419995-7420014 | None:intergenic | 25.0% |
| AAGACTAAGTTCCTTCAAAA+GGG | + | chr8.4:7417773-7417792 | MS.gene57666:CDS | 30.0% | |
| AATATTACCTGGAAGAATGA+AGG | - | chr8.4:7418394-7418413 | None:intergenic | 30.0% | |
| ATAATGCAATCATCGTGTAT+TGG | - | chr8.4:7419303-7419322 | None:intergenic | 30.0% | |
| ATATTACCTGGAAGAATGAA+GGG | - | chr8.4:7418393-7418412 | None:intergenic | 30.0% | |
| CAATGATGATTCAAGTGAAA+AGG | + | chr8.4:7419731-7419750 | MS.gene57666:CDS | 30.0% | |
| CACATCTATGATAGTACTAT+TGG | + | chr8.4:7419393-7419412 | MS.gene57666:intron | 30.0% | |
| CCTAATAGCATTTCAGAAAA+TGG | - | chr8.4:7420035-7420054 | None:intergenic | 30.0% | |
| GTTTCAATGTAGCTCTTAAT+AGG | + | chr8.4:7417868-7417887 | MS.gene57666:CDS | 30.0% | |
| TAAGACTAAGTTCCTTCAAA+AGG | + | chr8.4:7417772-7417791 | MS.gene57666:CDS | 30.0% | |
| TCTTAAGGTAAGTAAAGTGA+TGG | - | chr8.4:7417757-7417776 | None:intergenic | 30.0% | |
| TGATGCTTGATGAATTATTG+AGG | - | chr8.4:7419554-7419573 | None:intergenic | 30.0% | |
| TTTCAGACAGAACAATTTCA+TGG | + | chr8.4:7418265-7418284 | MS.gene57666:CDS | 30.0% | |
| ! | AACAAGGCTTTTGATATTGA+AGG | - | chr8.4:7419843-7419862 | None:intergenic | 30.0% |
| ! | TAACCGAGTTGAAAAGAAAA+TGG | + | chr8.4:7419448-7419467 | MS.gene57666:intron | 30.0% |
| !! | ACACATGTTAAAAGCATTGT+TGG | + | chr8.4:7418721-7418740 | MS.gene57666:intron | 30.0% |
| !! | ATGTTAAAAGCATTGTTGGT+TGG | + | chr8.4:7418725-7418744 | MS.gene57666:intron | 30.0% |
| !! | TGTTGATTTGGTATCAAACA+AGG | - | chr8.4:7419859-7419878 | None:intergenic | 30.0% |
| !! | TTTGAAGGAACTTAGTCTTA+AGG | - | chr8.4:7417772-7417791 | None:intergenic | 30.0% |
| !!! | CCATTTTCTGAAATGCTATT+AGG | + | chr8.4:7420032-7420051 | MS.gene57666:CDS | 30.0% |
| AAAGCCCTTTAGCAGTAATA+AGG | + | chr8.4:7419084-7419103 | MS.gene57666:CDS | 35.0% | |
| ACTAAAGGTTAGTGCATGTT+TGG | - | chr8.4:7418501-7418520 | None:intergenic | 35.0% | |
| AGAAGAAAACATTGCCTTTC+TGG | + | chr8.4:7419187-7419206 | MS.gene57666:CDS | 35.0% | |
| ATGCACCTTATTACTGCTAA+AGG | - | chr8.4:7419092-7419111 | None:intergenic | 35.0% | |
| GATGATTCAAGTGAAAAGGT+GGG | + | chr8.4:7419735-7419754 | MS.gene57666:CDS | 35.0% | |
| TGATGATCCTAGTGTTAGTA+GGG | + | chr8.4:7418070-7418089 | MS.gene57666:intron | 35.0% | |
| TGATGATTCAAGTGAAAAGG+TGG | + | chr8.4:7419734-7419753 | MS.gene57666:CDS | 35.0% | |
| TGCACCTTATTACTGCTAAA+GGG | - | chr8.4:7419091-7419110 | None:intergenic | 35.0% | |
| TGGCACAGAAGAACAAAATA+AGG | + | chr8.4:7419221-7419240 | MS.gene57666:CDS | 35.0% | |
| TTGACTGATTAACGTGTAAG+AGG | - | chr8.4:7418819-7418838 | None:intergenic | 35.0% | |
| TTGTTTCCAGCATATGAGAT+AGG | - | chr8.4:7419066-7419085 | None:intergenic | 35.0% | |
| TTTACCTTCTATGCTTGCAA+TGG | - | chr8.4:7419685-7419704 | None:intergenic | 35.0% | |
| ! | AATGTGTTGAGGAGTATGTA+CGG | + | chr8.4:7418680-7418699 | MS.gene57666:intron | 35.0% |
| ! | GCTATTGCAGAATCAGTTTT+TGG | + | chr8.4:7419954-7419973 | MS.gene57666:CDS | 35.0% |
| ! | TTGATGATCCTAGTGTTAGT+AGG | + | chr8.4:7418069-7418088 | MS.gene57666:intron | 35.0% |
| ! | TTTGAAGCATTCTCTTGTGT+TGG | + | chr8.4:7417689-7417708 | MS.gene57666:CDS | 35.0% |
| !! | AAAGTGTTGTCTAGTTCTGA+TGG | + | chr8.4:7418627-7418646 | MS.gene57666:intron | 35.0% |
| !! | ATTTGTTGTGCAATGTGTTG+AGG | + | chr8.4:7418669-7418688 | MS.gene57666:intron | 35.0% |
| !! | GTAAAGATTAGTCTTGCACT+TGG | + | chr8.4:7419708-7419727 | MS.gene57666:CDS | 35.0% |
| !! | TGTTATAATAGTTCTGGTGG+TGG | + | chr8.4:7418176-7418195 | MS.gene57666:intron | 35.0% |
| !!! | AGTTTTTGGTTCAGCTGATT+TGG | + | chr8.4:7419968-7419987 | MS.gene57666:CDS | 35.0% |
| !!! | GATTTTGGTGCTGTTTGTTT+TGG | - | chr8.4:7419497-7419516 | None:intergenic | 35.0% |
| AAAGTGATGGCTACATGTAG+AGG | - | chr8.4:7417744-7417763 | None:intergenic | 40.0% | |
| ACAAACAGCACCAAAATCAC+TGG | + | chr8.4:7419499-7419518 | MS.gene57666:CDS | 40.0% | |
| AGATGCTCATCTTGGAATCA+AGG | - | chr8.4:7419036-7419055 | None:intergenic | 40.0% | |
| AGCACCAAAATCACTGGAAT+AGG | + | chr8.4:7419505-7419524 | MS.gene57666:CDS | 40.0% | |
| CACCAAAATCACTGGAATAG+GGG | + | chr8.4:7419507-7419526 | MS.gene57666:CDS | 40.0% | |
| CTCATAACCCTACTAACACT+AGG | - | chr8.4:7418080-7418099 | None:intergenic | 40.0% | |
| CTGTGATTCTCACTAGTTGA+AGG | - | chr8.4:7418224-7418243 | None:intergenic | 40.0% | |
| CTTGCAATGGAATCAAAGAC+TGG | - | chr8.4:7419672-7419691 | None:intergenic | 40.0% | |
| GAGAAAACATCAACAGCTTG+TGG | + | chr8.4:7420061-7420080 | MS.gene57666:CDS | 40.0% | |
| GATTCCATTGCAAGCATAGA+AGG | + | chr8.4:7419678-7419697 | MS.gene57666:CDS | 40.0% | |
| GCACCAAAATCACTGGAATA+GGG | + | chr8.4:7419506-7419525 | MS.gene57666:CDS | 40.0% | |
| GGAATAGTTTCAGATTGCCA+TGG | - | chr8.4:7419822-7419841 | None:intergenic | 40.0% | |
| GTGGATGTTGTGAAGTTTGA+TGG | - | chr8.4:7417824-7417843 | None:intergenic | 40.0% | |
| TAGCAGTAATAAGGTGCATG+AGG | + | chr8.4:7419093-7419112 | MS.gene57666:CDS | 40.0% | |
| TATGTACGGTTACTGAGCTA+TGG | + | chr8.4:7418694-7418713 | MS.gene57666:intron | 40.0% | |
| TATTGCAAGAGAATGTGCCA+TGG | + | chr8.4:7419802-7419821 | MS.gene57666:CDS | 40.0% | |
| TCACTAGTTGAAGGTGAACA+TGG | - | chr8.4:7418215-7418234 | None:intergenic | 40.0% | |
| TCAGAACCTATCTCATATGC+TGG | + | chr8.4:7419057-7419076 | MS.gene57666:CDS | 40.0% | |
| TGAGAGTGAATCAAAGGAGA+AGG | - | chr8.4:7417906-7417925 | None:intergenic | 40.0% | |
| ! | AATGTTTTCTTCTGTCCTGC+AGG | - | chr8.4:7419180-7419199 | None:intergenic | 40.0% |
| ! | CTCGTCAACTCAGTTCTTTT+TGG | - | chr8.4:7418347-7418366 | None:intergenic | 40.0% |
| ! | CTTAAGACAAGCCCTTTTGA+AGG | - | chr8.4:7417787-7417806 | None:intergenic | 40.0% |
| ! | GTCAACTCAGTTCTTTTTGG+TGG | - | chr8.4:7418344-7418363 | None:intergenic | 40.0% |
| ! | TGTTCTGTCTGAAACTGCTA+AGG | - | chr8.4:7418259-7418278 | None:intergenic | 40.0% |
| !! | AGCATTGTTGGTTGGTAGTA+AGG | + | chr8.4:7418733-7418752 | MS.gene57666:intron | 40.0% |
| !! | AGCTGATTTGGTCCTTCAAT+TGG | + | chr8.4:7419980-7419999 | MS.gene57666:CDS | 40.0% |
| !! | ATCAAAGGAGAAGGTGTTGT+TGG | - | chr8.4:7417897-7417916 | None:intergenic | 40.0% |
| !! | ATGAGAGCATTGGAAAGTGA+AGG | - | chr8.4:7417930-7417949 | None:intergenic | 40.0% |
| !! | ATTCTCTTGTGTTGGCTAGA+AGG | + | chr8.4:7417697-7417716 | MS.gene57666:CDS | 40.0% |
| !! | TCAAGAGCTCTAGATTGAAG+TGG | - | chr8.4:7417843-7417862 | None:intergenic | 40.0% |
| !! | TGTTGTGAAGTTTGATGGTG+TGG | - | chr8.4:7417819-7417838 | None:intergenic | 40.0% |
| !!! | GTTTGTTTTGGTGTAGACAG+TGG | - | chr8.4:7419485-7419504 | None:intergenic | 40.0% |
| ACGGAATCGAGGTGTAAGAT+TGG | - | chr8.4:7419589-7419608 | None:intergenic | 45.0% | |
| AGTAGGGTTATGAGAGAAGC+TGG | + | chr8.4:7418086-7418105 | MS.gene57666:intron | 45.0% | |
| GAAGGCTGAGAGTGAATCAA+AGG | - | chr8.4:7417912-7417931 | None:intergenic | 45.0% | |
| GAATCGAGGTGTAAGATTGG+AGG | - | chr8.4:7419586-7419605 | None:intergenic | 45.0% | |
| GCACAAGCTCATCAAAGAAG+AGG | + | chr8.4:7417966-7417985 | MS.gene57666:intron | 45.0% | |
| ! | ACTGAGTTGACGAGTACATC+AGG | + | chr8.4:7418353-7418372 | MS.gene57666:CDS | 45.0% |
| ! | CAATGCAGCAATGAGAGCAT+TGG | - | chr8.4:7417940-7417959 | None:intergenic | 45.0% |
| ! | TGCCCCTATTCCAGTGATTT+TGG | - | chr8.4:7419512-7419531 | None:intergenic | 45.0% |
| !! | CAATGGTGCTGCATGATTGT+TGG | - | chr8.4:7419614-7419633 | None:intergenic | 45.0% |
| !! | GTTCTGAGAGATGCTCATCT+TGG | - | chr8.4:7419044-7419063 | None:intergenic | 45.0% |
| ACATGTAGAGGAGTGACCTG+TGG | - | chr8.4:7417732-7417751 | None:intergenic | 50.0% | |
| AGCTCATTTCTCAGACCTGC+AGG | + | chr8.4:7419162-7419181 | MS.gene57666:CDS | 50.0% | |
| CCATGAGACTGAAGCCAGAA+AGG | - | chr8.4:7419204-7419223 | None:intergenic | 50.0% | |
| GAGTTGACGAGTACATCAGG+TGG | + | chr8.4:7418356-7418375 | MS.gene57666:CDS | 50.0% | |
| GCTTGACCCTTCATTCTTCC+AGG | + | chr8.4:7418384-7418403 | MS.gene57666:CDS | 50.0% | |
| TAGAAGGAGAGGTCATCCAC+AGG | + | chr8.4:7417713-7417732 | MS.gene57666:CDS | 50.0% | |
| TGCTGCATGATTGTTGGCGA+CGG | - | chr8.4:7419608-7419627 | None:intergenic | 50.0% | |
| TTGCTGCTGCTGCTGTTCTA+TGG | - | chr8.4:7417994-7418013 | None:intergenic | 50.0% | |
| ! | ACGAGTACATCAGGTGGACT+TGG | + | chr8.4:7418362-7418381 | MS.gene57666:CDS | 50.0% |
| !! | CCTTTCTGGCTTCAGTCTCA+TGG | + | chr8.4:7419201-7419220 | MS.gene57666:CDS | 50.0% |
| !! | CTTGTGTTGGCTAGAAGGAG+AGG | + | chr8.4:7417702-7417721 | MS.gene57666:CDS | 50.0% |
| GATTGTTGGCGACGGAATCG+AGG | - | chr8.4:7419600-7419619 | None:intergenic | 55.0% | |
| GCAGCAGCAGCAACAGCAAA+CGG | + | chr8.4:7418001-7418020 | MS.gene57666:intron | 55.0% | |
| TGAAGCAGCCTCTGCTGTGA+GGG | - | chr8.4:7417667-7417686 | None:intergenic | 55.0% | |
| CTGAAGCAGCCTCTGCTGTG+AGG | - | chr8.4:7417668-7417687 | None:intergenic | 60.0% | |
| GCAGCAGACCCTCACAGCAG+AGG | + | chr8.4:7417656-7417675 | MS.gene57666:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7417633 | 7420097 | 7417633 | ID=MS.gene57666 |
| chr8.4 | mRNA | 7417633 | 7420097 | 7417633 | ID=MS.gene57666.t1;Parent=MS.gene57666 |
| chr8.4 | exon | 7417633 | 7417889 | 7417633 | ID=MS.gene57666.t1.exon1;Parent=MS.gene57666.t1 |
| chr8.4 | CDS | 7417633 | 7417889 | 7417633 | ID=cds.MS.gene57666.t1;Parent=MS.gene57666.t1 |
| chr8.4 | exon | 7418187 | 7418405 | 7418187 | ID=MS.gene57666.t1.exon2;Parent=MS.gene57666.t1 |
| chr8.4 | CDS | 7418187 | 7418405 | 7418187 | ID=cds.MS.gene57666.t1;Parent=MS.gene57666.t1 |
| chr8.4 | exon | 7419030 | 7419242 | 7419030 | ID=MS.gene57666.t1.exon3;Parent=MS.gene57666.t1 |
| chr8.4 | CDS | 7419030 | 7419242 | 7419030 | ID=cds.MS.gene57666.t1;Parent=MS.gene57666.t1 |
| chr8.4 | exon | 7419464 | 7420097 | 7419464 | ID=MS.gene57666.t1.exon4;Parent=MS.gene57666.t1 |
| chr8.4 | CDS | 7419464 | 7420097 | 7419464 | ID=cds.MS.gene57666.t1;Parent=MS.gene57666.t1 |
| Gene Sequence |
| Protein sequence |
