AlfalfaGEDB | MS.gene57982

M. sativa cultivar XinJiangDaYe / MS.gene57982

KEGG: K22827
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9 PF13833.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57982.t1	XP_003609483.1	96.8	158	5	0	1	158	308	465	4.10E-81	310.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57982.t1	Q9SZ45	63.0	138	51	0	1	138	333	470	8.7e-48	191.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57982.t1	G7JGM0	96.8	158	5	0	1	158	308	465	3.0e-81	310.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049758	MS.gene57982	0.849121	3.96E-60	-1.69E-46
MS.gene049910	MS.gene57982	0.810886	9.22E-51	-1.69E-46
MS.gene049915	MS.gene57982	0.800436	1.44E-48	-1.69E-46
MS.gene050301	MS.gene57982	0.803882	2.82E-49	-1.69E-46
MS.gene051860	MS.gene57982	0.809351	1.97E-50	-1.69E-46
MS.gene052077	MS.gene57982	0.809248	2.08E-50	-1.69E-46
MS.gene053836	MS.gene57982	0.828765	7.49E-55	-1.69E-46
MS.gene054184	MS.gene57982	0.826689	2.36E-54	-1.69E-46
MS.gene054185	MS.gene57982	0.833119	6.40E-56	-1.69E-46
MS.gene054930	MS.gene57982	0.803795	2.94E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57982.t1	MTR_4g116190	96.835	158	5	0	1	158	308	465	8.36e-107	314
MS.gene57982.t1	MTR_1g012850	61.635	159	58	2	1	156	295	453	2.46e-63	202
MS.gene57982.t1	MTR_3g106550	60.625	160	60	2	1	157	286	445	6.08e-61	196
MS.gene57982.t1	MTR_3g106550	69.000	100	31	0	1	100	286	385	2.65e-39	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57982.t1	AT4G32060	63.043	138	51	0	1	138	333	470	6.67e-60	194
MS.gene57982.t1	AT4G32060	63.725	102	37	0	1	102	333	434	8.69e-40	140

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Find 32 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGGAACCATTTCGGCCA+AGG	0.487222	8.3:+9947250	MS.gene57982:CDS
AATGTCTGCAGATGCAACCA+AGG	0.647906	8.3:-9947285	None:intergenic
ACATAAACAAACTGCTGGAT+AGG	0.437978	8.3:+9947312	MS.gene57982:CDS
ACCAAATGCAGATTCAAGAT+AGG	0.395746	8.3:+9947891	MS.gene57982:CDS
ACCTCTCAGAAACTAAAAGA+AGG	0.495468	8.3:+9947827	MS.gene57982:intron
ACTGAATATGGCCAGAGAGA+AGG	0.593953	8.3:-9947429	None:intergenic
AGAAGGGTGGTATATGCATT+TGG	0.312703	8.3:+9947844	MS.gene57982:CDS
AGACAAAAGAATTACGTTTG+AGG	0.485400	8.3:+9947367	MS.gene57982:CDS
ATGTTGGTTGAACTGTGTAA+AGG	0.593116	8.3:+9947773	MS.gene57982:CDS
ATTCCCAAATCCAAAACGTG+AGG	0.644135	8.3:-9947742	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACAAAAGAATTACGTTTG+AGG	+	chr8.3:9947367-9947386	MS.gene57982:CDS	30.0%
CAATAAAAGAGGAACCATTT+CGG	+	chr8.3:9947244-9947263	MS.gene57982:CDS	30.0%
CACTATGATCACAATAAAAG+AGG	+	chr8.3:9947233-9947252	MS.gene57982:CDS	30.0%
TAATCACATAAACAAACTGC+TGG	+	chr8.3:9947307-9947326	MS.gene57982:CDS	30.0%
TGGAAAAGTTAATGGAGTAT+TGG	+	chr8.3:9947454-9947473	MS.gene57982:CDS	30.0%
ACATAAACAAACTGCTGGAT+AGG	+	chr8.3:9947312-9947331	MS.gene57982:CDS	35.0%
ACCTCTCAGAAACTAAAAGA+AGG	+	chr8.3:9947827-9947846	MS.gene57982:intron	35.0%
CATAAACAAACTGCTGGATA+GGG	+	chr8.3:9947313-9947332	MS.gene57982:CDS	35.0%
CCTCTCAGAAACTAAAAGAA+GGG	+	chr8.3:9947828-9947847	MS.gene57982:intron	35.0%
GGTATCATGTAATGTCATGT+AGG	+	chr8.3:9947596-9947615	MS.gene57982:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	9947212	9947912	9947212	ID=MS.gene57982
chr8.3	mRNA	9947212	9947912	9947212	ID=MS.gene57982.t1;Parent=MS.gene57982
chr8.3	exon	9947212	9947508	9947212	ID=MS.gene57982.t1.exon1;Parent=MS.gene57982.t1
chr8.3	CDS	9947212	9947508	9947212	ID=cds.MS.gene57982.t1;Parent=MS.gene57982.t1
chr8.3	exon	9947618	9947795	9947618	ID=MS.gene57982.t1.exon2;Parent=MS.gene57982.t1
chr8.3	CDS	9947618	9947795	9947618	ID=cds.MS.gene57982.t1;Parent=MS.gene57982.t1
chr8.3	exon	9947836	9947912	9947836	ID=MS.gene57982.t1.exon3;Parent=MS.gene57982.t1
chr8.3	CDS	9947836	9947912	9947836	ID=cds.MS.gene57982.t1;Parent=MS.gene57982.t1

Gene Sequence

>MS.gene57982

ATCTTGAGATTAGAATTTTCTCACTATGATCACAATAAAAGAGGAACCATTTCGGCCAAGGATTTTGCACTATCCTTGGTTGCATCTGCAGACATTAATCACATAAACAAACTGCTGGATAGGGTCGACGAATTAGACAATGATCCACATATAAGAGACAAAAGAATTACGTTTGAGGAGTTCAAAGCTTTTGCGGAATTGCGCAAGAAGTTGCAGTCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGGCAAAAAATGATTTTCAAAGAGCAGCATCTCAGGTACTAATGCTTCCCTATTATGCCTAAAAATATATTTACAGTAGTAATCTATTGATCATTTTTAATAGATGAATAACTTATTATTACGGTATCATGTAATGTCATGTAGGTATGCGGCGTCGATATTACAGAGAATGTACTTGACATAATTTTTCATGTCTTTGATGCTAACCGTGATGGGAGCTTAAGTGCAAGCGAGTTTGTTCGAGTTATACAAAGAAGAGAAGACATTTCCTCACGTTTTGGATTTGGGAATTTGATAACATGTTGGTTGAACTGTGTAAAGGGTAAATGTTAATGAGCAGAGCATCCATTTTCACCTCTCAGAAACTAAAAGAAGGGTGGTATATGCATTTGGGTTTTACAGTAATGGACTCATTCGACCAAATGCAGATTCAAGATAG

Protein sequence

>MS.gene57982.t1

ILRLEFSHYDHNKRGTISAKDFALSLVASADINHINKLLDRVDELDNDPHIRDKRITFEEFKAFAELRKKLQSFSLAIFSYGKVNGVLAKNDFQRAASQVCGVDITENVLDIIFHVFDANRDGSLSASEFVRVIQRREDISSRFGFGNLITCWLNCVKETKRRVVYAFGFYSNGLIRPNADSR